##gff-version 3
#!gff-spec-version 1.21
#!processor NCBI annotwriter
#!genome-build ASM6150v1
#!genome-build-accession NCBI_Assembly:GCA_000061505.1
##sequence-region AM406670.1 1 4376040
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=62928
AM406670.1	EMBL	region	1	4376040	.	+	.	ID=id0;Dbxref=taxon:62928;Is_circular=true;gbkey=Src;mol_type=genomic DNA;strain=BH72
AM406670.1	EMBL	gene	1	1443	.	+	.	ID=gene0;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=azo0001
AM406670.1	EMBL	CDS	1	1443	.	+	0	ID=cds0;Parent=gene0;Dbxref=EnsemblGenomes-Gn:azo0001,EnsemblGenomes-Tr:CAL92619,GOA:A1K1B4,InterPro:IPR001957,InterPro:IPR003593,InterPro:IPR010921,InterPro:IPR013159,InterPro:IPR013317,InterPro:IPR018312,InterPro:IPR020591,InterPro:IPR024633,InterPro:IPR027417,NCBI_GP:CAL92619.1;Name=CAL92619.1;Note=Chromosomal replication initiator protein dnaA. Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication%3B it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5-TTATC(C/A)A(C/A)A-3. DnaA binds to ATP and to acidic phospholipids (By similarity). InterPro: Bacterial chromosomal replication initiator protein DnaA%3B~High confidence in function and specificity;gbkey=CDS;gene=dnaA;product=chromosomal replication initiator protein;protein_id=CAL92619.1;transl_table=11
AM406670.1	EMBL	gene	1502	2611	.	+	.	ID=gene1;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=azo0002
AM406670.1	EMBL	CDS	1502	2611	.	+	0	ID=cds1;Parent=gene1;Dbxref=EnsemblGenomes-Gn:azo0002,EnsemblGenomes-Tr:CAL92620,GOA:A1K1B5,InterPro:IPR001001,InterPro:IPR022634,InterPro:IPR022635,InterPro:IPR022637,UniProtKB/TrEMBL:A1K1B5,NCBI_GP:CAL92620.1;Name=CAL92620.1;Note=DNA polymerase III beta chain (EC 2.7.7.7). DNA polymerase III is a complex multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3 to 5 exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA It slides freely (bidirectional and ATP- independent) along duplex DNA (By similarity). InterPro: DNA polymerase III beta chain dnan: DNA polymerase III beta subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=dnaN;product=DNA-directed DNA polymerase;protein_id=CAL92620.1;transl_table=11
AM406670.1	EMBL	gene	2821	5310	.	+	.	ID=gene2;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=azo0003
AM406670.1	EMBL	CDS	2821	5310	.	+	0	ID=cds2;Parent=gene2;Dbxref=EnsemblGenomes-Gn:azo0003,EnsemblGenomes-Tr:CAL92621,GOA:A1K1B6,InterPro:IPR001241,InterPro:IPR002288,InterPro:IPR003594,InterPro:IPR006171,InterPro:IPR011557,InterPro:IPR013506,InterPro:IPR013759,InterPro:IPR013760,InterPro:IPR014721,InterPro:IPR018522,InterPro:IPR020568,UniProtKB/TrEMBL:A1K1B6,NCBI_GP:CAL92621.1;Name=CAL92621.1;Note=DNA gyrase subunit B (EC 5.99.1.3). DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings including catenanes and knotted rings. InterPro: DNA topoisomerase II recJ: single-stranded-DNA-specific ex%3B~High confidence in function and specificity;gbkey=CDS;gene=gyrB;product=DNA topoisomerase (ATP-hydrolysing);protein_id=CAL92621.1;transl_table=11
AM406670.1	EMBL	gene	5505	7346	.	+	.	ID=gene3;Name=hsdM;gbkey=Gene;gene=hsdM;gene_biotype=protein_coding;locus_tag=azo0004
AM406670.1	EMBL	CDS	5505	7346	.	+	0	ID=cds3;Parent=gene3;Dbxref=EnsemblGenomes-Gn:azo0004,EnsemblGenomes-Tr:CAL92622,GOA:A1K1B7,InterPro:IPR002052,InterPro:IPR002296,InterPro:IPR003356,InterPro:IPR022749,InterPro:IPR029063,UniProtKB/TrEMBL:A1K1B7,NCBI_GP:CAL92622.1;Name=CAL92622.1;Note=METHYLATION OF SPECIFIC ADENINE RESIDUES%3B REQUIRED FOR BOTH RESTRICTION AND MODIFICATION ACTIVITIES (BY SIMILARITY)%2C TREMBL:Q7VCN2 (55%25 identity). InterPro (IPR002296): N6 adenine-specific DNA methyltransferase%2CN12 class. InterPro (IPR003356): N-6 DNA methylase. InterPro (IPR003665): Type I restriction-modification system M subunit. Pfam (PF02384): N-6 DNA Methylase. Pfam (PF02506): Type I restriction modification system%2C M protein.%3B~High confidence in function and specificity;gbkey=CDS;gene=hsdM;product=Site-specific DNA-methyltransferase (adenine-specific);protein_id=CAL92622.1;transl_table=11
AM406670.1	EMBL	gene	7453	8910	.	+	.	ID=gene4;Name=mloB;gbkey=Gene;gene=mloB;gene_biotype=protein_coding;locus_tag=azo0005
AM406670.1	EMBL	CDS	7453	8910	.	+	0	ID=cds4;Parent=gene4;Dbxref=EnsemblGenomes-Gn:azo0005,EnsemblGenomes-Tr:CAL92623,GOA:A1K1B8,InterPro:IPR007421,InterPro:IPR025831,UniProtKB/TrEMBL:A1K1B8,NCBI_GP:CAL92623.1;Name=CAL92623.1;Note=Putative restriction modification gene%2C%3B~Function unclear;gbkey=CDS;gene=mloB;product=putative restriction modification gene;protein_id=CAL92623.1;transl_table=11
AM406670.1	EMBL	gene	8919	9038	.	+	.	ID=gene5;Name=azo0006;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0006
AM406670.1	EMBL	CDS	8919	9038	.	+	0	ID=cds5;Parent=gene5;Dbxref=EnsemblGenomes-Gn:azo0006,EnsemblGenomes-Tr:CAL92624,UniProtKB/TrEMBL:A1K1B9,NCBI_GP:CAL92624.1;Name=CAL92624.1;Note=Hypothetical protein predicted by Glimmer/Critica. No homology to the data bank no domains predicted no signal peptide no TMHS;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL92624.1;transl_table=11
AM406670.1	EMBL	gene	9035	10384	.	+	.	ID=gene6;Name=hsdS;gbkey=Gene;gene=hsdS;gene_biotype=protein_coding;locus_tag=azo0007
AM406670.1	EMBL	CDS	9035	10384	.	+	0	ID=cds6;Parent=gene6;Dbxref=EnsemblGenomes-Gn:azo0007,EnsemblGenomes-Tr:CAL92625,GOA:A1K1C0,InterPro:IPR000055,UniProtKB/TrEMBL:A1K1C0,NCBI_GP:CAL92625.1;Name=CAL92625.1;Note=S subunit%2C DNA SPECIFICITY SUBUNIT REQUIRED FOR RESTRICTION AND MODIFICATION%2C TREMBL:Q9AAH7 (31%25 identity)%3B TREMBL:Q8PIJ8 (28%25 identity). Pfam (PF01420): Type I restriction modification DNA specificity domain. InterPro (IPR000055): Restriction modification system DNA specificity domain.%3B~High confidence in function and specificity;gbkey=CDS;gene=hsdS;product=Type I site-specific deoxyribonuclease;protein_id=CAL92625.1;transl_table=11
AM406670.1	EMBL	gene	10381	11256	.	+	.	ID=gene7;Name=azo0008;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0008
AM406670.1	EMBL	CDS	10381	11256	.	+	0	ID=cds7;Parent=gene7;Dbxref=EnsemblGenomes-Gn:azo0008,EnsemblGenomes-Tr:CAL92626,InterPro:IPR000305,InterPro:IPR025579,UniProtKB/TrEMBL:A1K1C1,NCBI_GP:CAL92626.1;Name=CAL92626.1;Note=Conserved hypothetical protein. Homology to RB11641 of R.baltica of 42%25 (tremble:Q7TTG8). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92626.1;transl_table=11
AM406670.1	EMBL	gene	11468	11794	.	+	.	ID=gene8;Name=azo0009;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0009
AM406670.1	EMBL	CDS	11468	11794	.	+	0	ID=cds8;Parent=gene8;Dbxref=EnsemblGenomes-Gn:azo0009,EnsemblGenomes-Tr:CAL92627,InterPro:IPR011991,UniProtKB/TrEMBL:A1K1C2,NCBI_GP:CAL92627.1;Name=CAL92627.1;Note=Transcriptional regulatory protein%2C 35%25 identity to TrEMBL%3BQ89JK0. Has Prosite%2C PS01117%3B HTH_MARR_1 domain%3B The marR-type HTH domain is a DNA-binding%2C winged helix-turn-helix (wHTH)domain of about 135 amino acids present in transcription regulators of the marR/slyA family%2Cinvolved in the development of antibiotic resistance%3B~Function unclear;gbkey=CDS;product=transcriptional regulatory protein;protein_id=CAL92627.1;transl_table=11
AM406670.1	EMBL	gene	11948	15061	.	+	.	ID=gene9;Name=hsdR;gbkey=Gene;gene=hsdR;gene_biotype=protein_coding;locus_tag=azo0010
AM406670.1	EMBL	CDS	11948	15061	.	+	0	ID=cds9;Parent=gene9;Dbxref=EnsemblGenomes-Gn:azo0010,EnsemblGenomes-Tr:CAL92628,GOA:A1K1C3,InterPro:IPR006935,InterPro:IPR007409,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:A1K1C3,NCBI_GP:CAL92628.1;Name=CAL92628.1;Note=SUBUNIT R IS REQUIRED FOR BOTH NUCLEASE AND ATPASE ACTIVITIES BUT NOT FOR MODIFICATION (BY SIMILARITY)%2CTREMBL:Q9AAH5 (64%25 identity)%3B TREMBL:Q8FUH0 (40%25 identity). InterPro (IPR001410): DEAD/DEAH box helicase TIGRFAM (TIGR00348): Type I site-specific deoxyribonuclease%2C HsdR family.%3B~High confidence in function and specificity;gbkey=CDS;gene=hsdR;product=Type I site-specific deoxyribonuclease;protein_id=CAL92628.1;transl_table=11
AM406670.1	EMBL	gene	15231	16085	.	-	.	ID=gene10;Name=azo0011;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0011
AM406670.1	EMBL	CDS	15231	16085	.	-	0	ID=cds10;Parent=gene10;Dbxref=EnsemblGenomes-Gn:azo0011,EnsemblGenomes-Tr:CAL92629,GOA:A1K1C4,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K1C4,NCBI_GP:CAL92629.1;Name=CAL92629.1;Note=The short-chain dehydrogenases/reductases family is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2C similarity to SWISSPROT:P37959 (35%25 identity)%3B TREMBL:Q930L8 (44%25 identity)%3B TREMBL:Q9I3W5 (41%25 identity). Pfam (PF00106): Short chain dehydrogenase. InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL92629.1;transl_table=11
AM406670.1	EMBL	gene	16203	17150	.	+	.	ID=gene11;Name=bdhR;gbkey=Gene;gene=bdhR;gene_biotype=protein_coding;locus_tag=azo0012
AM406670.1	EMBL	CDS	16203	17150	.	+	0	ID=cds11;Parent=gene11;Dbxref=EnsemblGenomes-Gn:azo0012,EnsemblGenomes-Tr:CAL92630,GOA:A1K1C5,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K1C5,NCBI_GP:CAL92630.1;Name=CAL92630.1;Note=Transcriptional regulator%2C LysR family%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=bdhR;product=transcriptional regulator%2C LysR family;protein_id=CAL92630.1;transl_table=11
AM406670.1	EMBL	gene	17232	17876	.	+	.	ID=gene12;Name=rluA1;gbkey=Gene;gene=rluA1;gene_biotype=protein_coding;locus_tag=azo0013
AM406670.1	EMBL	CDS	17232	17876	.	+	0	ID=cds12;Parent=gene12;Dbxref=EnsemblGenomes-Gn:azo0013,EnsemblGenomes-Tr:CAL92631,GOA:A1K1C6,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR020103,UniProtKB/TrEMBL:A1K1C6,NCBI_GP:CAL92631.1;Name=CAL92631.1;Note=Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs .%3B~Family membership;gbkey=CDS;gene=rluA1;product=pseudouridine synthase A;protein_id=CAL92631.1;transl_table=11
AM406670.1	EMBL	gene	18010	18567	.	-	.	ID=gene13;Name=nifF1;gbkey=Gene;gene=nifF1;gene_biotype=protein_coding;locus_tag=azo0014
AM406670.1	EMBL	CDS	18010	18567	.	-	0	ID=cds13;Parent=gene13;Dbxref=EnsemblGenomes-Gn:azo0014,EnsemblGenomes-Tr:CAL92632,GOA:A1K1C7,InterPro:IPR008254,InterPro:IPR010086,InterPro:IPR029039,UniProtKB/TrEMBL:A1K1C7,NCBI_GP:CAL92632.1;Name=CAL92632.1;Note=Probable flavodoxin. Homology to nifF of A. vinelandii of 49%25 (pir|FXAVEP) Flavodoxins are electron-transfer proteins that function in various electron transport systems. Flavodoxins bind one FMN molecule%2Cwhich serves as a redox-active prosthetic group and are functionally interchangeable with ferredoxins. InterPro: Flavodoxin (IPR001226) Pfam: Flavodoxin no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=nifF1;product=probable flavodoxin;protein_id=CAL92632.1;transl_table=11
AM406670.1	EMBL	gene	18971	19501	.	-	.	ID=gene14;Name=azo0015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0015
AM406670.1	EMBL	CDS	18971	19501	.	-	0	ID=cds14;Parent=gene14;Dbxref=EnsemblGenomes-Gn:azo0015,EnsemblGenomes-Tr:CAL92633,GOA:A1K1C8,InterPro:IPR005302,InterPro:IPR011037,InterPro:IPR015808,UniProtKB/TrEMBL:A1K1C8,NCBI_GP:CAL92633.1;Name=CAL92633.1;Note=Conserved hypothetical protein%2C 50%25 identitcal(67%25 similarity) to TrEMBL%3BQ888U7.TrEMBL%3BQ747X0(33%25 identity). Has PF03473%2C MOSC domain%3BIPR005302%3B The MOSC (MOCO sulfurase C-terminal) domain is a superfamily of beta-strand-rich domains identified in the molybdenum cofactor sulfurase and several other proteins from both prokaryotes and eukaryotes. These MOSC domains contain an absolutely conserved cysteine and occur either as stand-alone forms such as P32157%2C or fused to other domains such as NifS-like catalytic domain in Molybdenum cofactor sulfurase. The MOSC domain is predicted to be a sulfur-carrier domain that receives sulfur abstracted by the pyridoxal phosphate-dependent NifS-like enzymes%2C on its conserved cysteine%2Cand delivers it for the formation of diverse sulfur-metal clusters.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92633.1;transl_table=11
AM406670.1	EMBL	gene	19505	19855	.	-	.	ID=gene15;Name=azo0016;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0016
AM406670.1	EMBL	CDS	19505	19855	.	-	0	ID=cds15;Parent=gene15;Dbxref=EnsemblGenomes-Gn:azo0016,EnsemblGenomes-Tr:CAL92634,UniProtKB/TrEMBL:A1K1C9,NCBI_GP:CAL92634.1;Name=CAL92634.1;Note=Conserved hypothetical membrane protein. Homology to Daro03002995 of Dechloromonas aromatica of 34%25 (ZP_00348572.1). No signal peptide present. TMHMM reporting one transmembrane helix. No domains predicted.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92634.1;transl_table=11
AM406670.1	EMBL	gene	19882	20355	.	-	.	ID=gene16;Name=azo0017;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0017
AM406670.1	EMBL	CDS	19882	20355	.	-	0	ID=cds16;Parent=gene16;Dbxref=EnsemblGenomes-Gn:azo0017,EnsemblGenomes-Tr:CAL92635,InterPro:IPR007791,InterPro:IPR029024,UniProtKB/TrEMBL:A1K1D0,NCBI_GP:CAL92635.1;Name=CAL92635.1;Note=Hypothetical protein%2C 28%25 identity to TrEMBL%3BQ8E8U4. Has PF07049%2C Protein of unknown function (DUF1332)%3B IPR010755%3BThis family consists of several hypothetical bacterial proteins of around 165 residues in length. The function of this family is unknown.%3B~Function unclear;gbkey=CDS;product=Hypothetical protein;protein_id=CAL92635.1;transl_table=11
AM406670.1	EMBL	gene	20480	21061	.	-	.	ID=gene17;Name=azo0018;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0018
AM406670.1	EMBL	CDS	20480	21061	.	-	0	ID=cds17;Parent=gene17;Dbxref=EnsemblGenomes-Gn:azo0018,EnsemblGenomes-Tr:CAL92636,GOA:A1K1D1,InterPro:IPR002818,InterPro:IPR006286,InterPro:IPR029062,UniProtKB/TrEMBL:A1K1D1,NCBI_GP:CAL92636.1;Name=CAL92636.1;Note=InterPro (IPR002818): ThiJ/PfpI. Pfam (PF01965): DJ-1/PfpI family.%3B~Specificity unclear;gbkey=CDS;product=ThiJ/PfpI family protein;protein_id=CAL92636.1;transl_table=11
AM406670.1	EMBL	gene	21263	22402	.	+	.	ID=gene18;Name=azo0019;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0019
AM406670.1	EMBL	CDS	21263	22402	.	+	0	ID=cds18;Parent=gene18;Dbxref=EnsemblGenomes-Gn:azo0019,EnsemblGenomes-Tr:CAL92637,GOA:A1K1D2,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1K1D2,NCBI_GP:CAL92637.1;Name=CAL92637.1;Note=This family includes extracellular ligand binding domains of a wide range of receptors and it also includes the bacterial amino acid binding proteins of known structure. Similar to trembl|Q8XVG7 (38%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Function unclear;gbkey=CDS;product=extracellular ligand binding protein;protein_id=CAL92637.1;transl_table=11
AM406670.1	EMBL	gene	22404	23309	.	-	.	ID=gene19;Name=azo0020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0020
AM406670.1	EMBL	CDS	22404	23309	.	-	0	ID=cds19;Parent=gene19;Dbxref=EnsemblGenomes-Gn:azo0020,EnsemblGenomes-Tr:CAL92638,GOA:A1K1D3,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K1D3,NCBI_GP:CAL92638.1;Name=CAL92638.1;Note=Probable transcriptional regulator%2C LysR family%2C%3B~Family membership;gbkey=CDS;product=probable transcriptional regulator%2C LysR family;protein_id=CAL92638.1;transl_table=11
AM406670.1	EMBL	gene	23470	23928	.	+	.	ID=gene20;Name=iorA;gbkey=Gene;gene=iorA;gene_biotype=protein_coding;locus_tag=azo0021
AM406670.1	EMBL	CDS	23470	23928	.	+	0	ID=cds20;Parent=gene20;Dbxref=EnsemblGenomes-Gn:azo0021,EnsemblGenomes-Tr:CAL92639,GOA:A1K1D4,InterPro:IPR001041,InterPro:IPR002888,InterPro:IPR006058,InterPro:IPR012675,UniProtKB/TrEMBL:A1K1D4,NCBI_GP:CAL92639.1;Name=CAL92639.1;Note=Probable isoquinoline 1-oxidoreductase%2C alpha subunit Homology to iroA of B. diminuta of 58%25 (sprot|IORA_BREDI). InterPro: [2Fe-2S] binding domain (IPR002888)%3B Ferredoxin (IPR001041) Pfam: 2FE-2S iron-sulfur cluster binding domein%2C [2Fe-2S] binding domain no signal peptide no TMHs%3B~Specificity unclear;gbkey=CDS;gene=iorA;product=probable isoquinoline 1-oxidoreductase%2C alpha subunit;protein_id=CAL92639.1;transl_table=11
AM406670.1	EMBL	gene	23939	26152	.	+	.	ID=gene21;Name=iorB;gbkey=Gene;gene=iorB;gene_biotype=protein_coding;locus_tag=azo0022
AM406670.1	EMBL	CDS	23939	26152	.	+	0	ID=cds21;Parent=gene21;Dbxref=EnsemblGenomes-Gn:azo0022,EnsemblGenomes-Tr:CAL92640,GOA:A1K1D5,InterPro:IPR000674,InterPro:IPR006311,InterPro:IPR008274,InterPro:IPR012368,InterPro:IPR019546,UniProtKB/TrEMBL:A1K1D5,NCBI_GP:CAL92640.1;Name=CAL92640.1;Note=Putative isoquinoline 1-oxidoreductase%2C beta subunit Homology to iorB of B. diminuta of 34%25 (sprot|IORB_BREDI). InterPro: Aldehyde oxidase and xanthine dehydrogenase C terminus (IPR000674) Pfam: Aldehyde oxidase and xanthine dehydrogenase signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=iorB;product=putative isoquinoline 1-oxidoreductase%2C beta subunit;protein_id=CAL92640.1;transl_table=11
AM406670.1	EMBL	gene	26175	27197	.	+	.	ID=gene22;Name=azo0023;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0023
AM406670.1	EMBL	CDS	26175	27197	.	+	0	ID=cds22;Parent=gene22;Dbxref=EnsemblGenomes-Gn:azo0023,EnsemblGenomes-Tr:CAL92641,InterPro:IPR003777,InterPro:IPR016040,InterPro:IPR027051,UniProtKB/TrEMBL:A1K1D6,NCBI_GP:CAL92641.1;Name=CAL92641.1;Note=Conserved hypothetical protein (Xanthine like-dehydrogenase accessory factor). Homology to Rsc1464 (hyp. protein) of R. solanacearum of 66%25 (CAD15165). InterPro: DUF182 Pfam: uncharacterized BCR%2C COG1975 no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92641.1;transl_table=11
AM406670.1	EMBL	gene	27194	27763	.	+	.	ID=gene23;Name=azo0024;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0024
AM406670.1	EMBL	CDS	27194	27763	.	+	0	ID=cds23;Parent=gene23;Dbxref=EnsemblGenomes-Gn:azo0024,EnsemblGenomes-Tr:CAL92642,InterPro:IPR025877,InterPro:IPR029044,UniProtKB/TrEMBL:A1K1D7,NCBI_GP:CAL92642.1;Name=CAL92642.1;Note=Purine catabolism protein pucB. TREMBL:Q8XZ0: 40%25 identity%2C 47%25 similarity Required for xanthine dehydrogenase activity. Could be involved in formation of the molybdenum cofactor required by xanthine dehydrogenase. FUNCTION: Links a guanosine 5'-phosphate to molydopterin (MPT) forming molybdopterin guanine dinucleotide (MGD) (By similarity). PATHWAY: Molybdenum cofactor biosynthesis. SUBCELLULAR LOCATION: Cytoplasmic (By similarity). SIMILARITY: Belongs to the mobA family. Pfam:UPF0007:Uncharacterized protein family UPF000 ispD: 4-diphosphocytidyl-2C-methyl-D-er Non-secretory protein with signal peptide probability: 0 No TMH's (TMHMM predicted).%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92642.1;transl_table=11
AM406670.1	EMBL	gene	28052	28618	.	+	.	ID=gene24;Name=azo0025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0025
AM406670.1	EMBL	CDS	28052	28618	.	+	0	ID=cds24;Parent=gene24;Dbxref=EnsemblGenomes-Gn:azo0025,EnsemblGenomes-Tr:CAL92643,GOA:A1K1D8,InterPro:IPR002563,InterPro:IPR012349,UniProtKB/TrEMBL:A1K1D8,NCBI_GP:CAL92643.1;Name=CAL92643.1;Note=Hypothetical protein yddH. TREMBL:Q7NTI1:66%25 identity%2C 76%25 similarity InterPro:IPR002563%3B Flavin_Reduct. Pfam:PF01613%3B Flavin_Reduct%3B InterPro: Flavin reductase-like domain Non-secretory protein with no signal peptide. No transmembrane helices TIGR00357: PilB-related protein%3B~High confidence in function and specificity;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92643.1;transl_table=11
AM406670.1	EMBL	gene	28631	29569	.	-	.	ID=gene25;Name=acbB;gbkey=Gene;gene=acbB;gene_biotype=protein_coding;locus_tag=azo0026
AM406670.1	EMBL	CDS	28631	29569	.	-	0	ID=cds25;Parent=gene25;Dbxref=EnsemblGenomes-Gn:azo0026,EnsemblGenomes-Tr:CAL92644,GOA:A1K1D9,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:A1K1D9,NCBI_GP:CAL92644.1;Name=CAL92644.1;Note=dTDP-glucose 4%2C6-dehydratase%2C AcbB%2Cprobably involved in the biosynthesis of the acarviose moiety of the alpha-glucosidase inhibitor acarbose. Belongs to the sugar epimerase family. dTDP-glucose dehydratase subfamily. 30%25 dTDP_gluc_dehyt.IPR001509%3B Epimerase_Dh. Pfam:PF01370%3B Epimerase%3B 1. TIGRFAMs:TIGR01181%3B dTDP_gluc_dehyt%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=acbB;product=putative dTDP-glucose 4-6-dehydratase;protein_id=CAL92644.1;transl_table=11
AM406670.1	EMBL	gene	29590	30477	.	+	.	ID=gene26;Name=exoU;gbkey=Gene;gene=exoU;gene_biotype=protein_coding;locus_tag=azo0027
AM406670.1	EMBL	CDS	29590	30477	.	+	0	ID=cds26;Parent=gene26;Dbxref=EnsemblGenomes-Gn:azo0027,EnsemblGenomes-Tr:CAL92645,GOA:A1K1E0,InterPro:IPR001173,InterPro:IPR027791,InterPro:IPR029044,UniProtKB/TrEMBL:A1K1E0,NCBI_GP:CAL92645.1;Name=CAL92645.1;Note=Putative glycosyl transferase. Weak Homology with hits spanning the entire length of protein. 24%25 identitcal to TrEMBL%3BQ8F209.TrEMBL%3B Q89D69(33%25 identity) Has PF00535%2CGlycosyl transferase:IPR001173%3BDiverse family%2Ctransferring sugar from UDP-glucose%2C UDP-N-acetyl-galactosamine%2C GDP-mannose or CDP-abequose%2C to a range of substrates including cellulose%2C dolichol phosphate and teichoic acids. The biosynthesis of disaccharides%2Coligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These are enzymes that catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules%2Cforming glycosidic bonds.%3B~Family membership;gbkey=CDS;gene=exoU;product=Glycosyltransferase;protein_id=CAL92645.1;transl_table=11
AM406670.1	EMBL	gene	30502	30732	.	-	.	ID=gene27;Name=azo0028;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0028
AM406670.1	EMBL	CDS	30502	30732	.	-	0	ID=cds27;Parent=gene27;Dbxref=EnsemblGenomes-Gn:azo0028,EnsemblGenomes-Tr:CAL92646,InterPro:IPR021529,UniProtKB/TrEMBL:A1K1E1,NCBI_GP:CAL92646.1;Name=CAL92646.1;Note=Conserved hypothetical membrane protein Homology to cv0580 of C. violaceum of 41%25 (trembl|Q7P0I7(SRS)) no domains predicted no signal peptide 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92646.1;transl_table=11
AM406670.1	EMBL	gene	30906	31676	.	+	.	ID=gene28;Name=azo0029;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0029
AM406670.1	EMBL	CDS	30906	31676	.	+	0	ID=cds28;Parent=gene28;Dbxref=EnsemblGenomes-Gn:azo0029,EnsemblGenomes-Tr:CAL92647,GOA:A1K1E2,InterPro:IPR005496,UniProtKB/TrEMBL:A1K1E2,NCBI_GP:CAL92647.1;Name=CAL92647.1;Note=Similar to a tellurium resistance protein TerC. Belongs to the terC family. This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. Similar to a putative membrane protein TerC%2C80%25 identity to TrEMBL%3B Q5P410 from Azoarcus sp EnN1. 50%25 RNA_rec_mot.IPR005496%3B TerC. Pfam:PF03741%3B TerC%3B 1. TIGR:SPTO2691. TMHelix:5.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92647.1;transl_table=11
AM406670.1	EMBL	gene	31735	32625	.	-	.	ID=gene29;Name=gltR;gbkey=Gene;gene=gltR;gene_biotype=protein_coding;locus_tag=azo0030
AM406670.1	EMBL	CDS	31735	32625	.	-	0	ID=cds29;Parent=gene29;Dbxref=EnsemblGenomes-Gn:azo0030,EnsemblGenomes-Tr:CAL92648,GOA:A1K1E3,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K1E3,NCBI_GP:CAL92648.1;Name=CAL92648.1;Note=HTH-type transcriptional regulator gltR. POSITIVE REGULATOR OF GLUTAMATE BIOSYNTHESIS (GLTAB GENES). NEGATIVELY REGULATES ITS OWN EXPRESSION. Similar to SWISSPROT: sprot|GLTR_BACSU (33%25 Bacillus subtilis%2C HTH-type transcriptional regulator GltR) InterPro: IPR000847 HTH_LysR. IPR009058 Winged helix DNA-binding. Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2ClysR family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=gltR;product=probable transcriptional regulator%2C LysR family;protein_id=CAL92648.1;transl_table=11
AM406670.1	EMBL	gene	32784	34019	.	+	.	ID=gene30;Name=azo0031;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0031
AM406670.1	EMBL	CDS	32784	34019	.	+	0	ID=cds30;Parent=gene30;Dbxref=EnsemblGenomes-Gn:azo0031,EnsemblGenomes-Tr:CAL92649,InterPro:IPR010645,InterPro:IPR016196,UniProtKB/TrEMBL:A1K1E4,NCBI_GP:CAL92649.1;Name=CAL92649.1;Note=Permease member of the Major Facilitator Superfamily (MFS).MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 25%25 MFS.IPR005828%3B Sub_transporter. Pfam:PF00083%3B sugar_tr%3B 1. TMHelix: 10.%3B~High confidence in function and specificity;gbkey=CDS;product=putative permease member of the MFS transporters;protein_id=CAL92649.1;transl_table=11
AM406670.1	EMBL	gene	34326	34814	.	-	.	ID=gene31;Name=azo0032;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0032
AM406670.1	EMBL	CDS	34326	34814	.	-	0	ID=cds31;Parent=gene31;Dbxref=EnsemblGenomes-Gn:azo0032,EnsemblGenomes-Tr:CAL92650,InterPro:IPR011051,InterPro:IPR014710,InterPro:IPR025979,UniProtKB/TrEMBL:A1K1E5,NCBI_GP:CAL92650.1;Name=CAL92650.1;Note=Conserved hypothetical protein. Homology to nfa21510 of Nocardia farcinica of 31%25 (trembl:Q5YXU4). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92650.1;transl_table=11
AM406670.1	EMBL	gene	35113	35601	.	+	.	ID=gene32;Name=azo0033;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0033
AM406670.1	EMBL	CDS	35113	35601	.	+	0	ID=cds32;Parent=gene32;Dbxref=EnsemblGenomes-Gn:azo0033,EnsemblGenomes-Tr:CAL92651,InterPro:IPR011051,InterPro:IPR014710,InterPro:IPR025979,UniProtKB/TrEMBL:A1K1E6,NCBI_GP:CAL92651.1;Name=CAL92651.1;Note=Conserved hypothetical protein. Homology to nfa21510 of Nocardia farcinica of 42%25 (trembl:Q5YXU4). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92651.1;transl_table=11
AM406670.1	EMBL	gene	35640	37502	.	+	.	ID=gene33;Name=azo0034;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0034
AM406670.1	EMBL	CDS	35640	37502	.	+	0	ID=cds33;Parent=gene33;Dbxref=EnsemblGenomes-Gn:azo0034,EnsemblGenomes-Tr:CAL92652,InterPro:IPR010727,UniProtKB/TrEMBL:A1K1E7,NCBI_GP:CAL92652.1;Name=CAL92652.1;Note=Conserved hypothetical secreted protein. Homology to PP2042 of P. putida of 34%25 (TrEMBL%3BQ88L93) Has PF06980:(IPR010727)Protein of unknown function (DUF1302)%3BThis family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas. No TMHs signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92652.1;transl_table=11
AM406670.1	EMBL	gene	37514	38869	.	+	.	ID=gene34;Name=azo0035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0035
AM406670.1	EMBL	CDS	37514	38869	.	+	0	ID=cds34;Parent=gene34;Dbxref=EnsemblGenomes-Gn:azo0035,EnsemblGenomes-Tr:CAL92653,InterPro:IPR010752,UniProtKB/TrEMBL:A1K1E8,NCBI_GP:CAL92653.1;Name=CAL92653.1;Note=Conserved hypothetical secreted protein. Homology to PA3421 of P. aeruginosa of 50%25 (TrEMBL%3BQ9HYI4) Has (IPR010752)PF07044:Protein of unknown function (DUF1329)%3BThis family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica. No TMHs signal peptide present%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92653.1;transl_table=11
AM406670.1	EMBL	gene	38945	40102	.	+	.	ID=gene35;Name=azo0036;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0036
AM406670.1	EMBL	CDS	38945	40102	.	+	0	ID=cds35;Parent=gene35;Dbxref=EnsemblGenomes-Gn:azo0036,EnsemblGenomes-Tr:CAL92654,InterPro:IPR015943,InterPro:IPR028203,UniProtKB/TrEMBL:A1K1E9,NCBI_GP:CAL92654.1;Name=CAL92654.1;Note=Conserved hypothetical BNR domain protein. Homology to pp3201 of P. putida of 40%25 (trembl|Q88I01). InterPro: BNR repeat (IPR002860) Pfam: BNR repeat BNR repeats are short repeats never found closer than 40 residues together%2C which suggests that the repeat is structurally longer. These repeats are found in many glycosyl hydrolases as well as other extracellular proteins of unknown function. singal peptide no TMHs%3B~Function unclear;gbkey=CDS;product=conserved hypothetical BNR domain protein;protein_id=CAL92654.1;transl_table=11
AM406670.1	EMBL	gene	40095	42521	.	+	.	ID=gene36;Name=azo0037;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0037
AM406670.1	EMBL	CDS	40095	42521	.	+	0	ID=cds36;Parent=gene36;Dbxref=EnsemblGenomes-Gn:azo0037,EnsemblGenomes-Tr:CAL92655,GOA:A1K1F0,InterPro:IPR000731,InterPro:IPR004869,UniProtKB/TrEMBL:A1K1F0,NCBI_GP:CAL92655.1;Name=CAL92655.1;Note=Putative membrane protein MJ1562. TREMBL:Q88LB6: 47%25 identity%2C 63%25 similarity InterPro:IPR000731%3B SSD_5TM InterPro: HMGCR/Patched 5TM box Pfam:Patched:Patched family 2A067: efflux transporter putative Signal peptide absent. Presence of 12 transmembrane helices%3B~Family membership;gbkey=CDS;product=probable exporter of RND superfamily;protein_id=CAL92655.1;transl_table=11
AM406670.1	EMBL	gene	42527	43336	.	+	.	ID=gene37;Name=azo0038;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0038
AM406670.1	EMBL	CDS	42527	43336	.	+	0	ID=cds37;Parent=gene37;Dbxref=EnsemblGenomes-Gn:azo0038,EnsemblGenomes-Tr:CAL92656,GOA:A1K1F1,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K1F1,NCBI_GP:CAL92656.1;Name=CAL92656.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases. EntA%2Ca 2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase enzyme%2Cis involved in the third stage of enterobactin biosynthesis and converts isochorismate to 2%2C3-dihydroxybenzoic acid (DHBA)%2C SWISSPROT:Q10855 (37%25 identity)%3B TREMBL:Q89M15 (36%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. InterPro (IPR003560): 2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL92656.1;transl_table=11
AM406670.1	EMBL	gene	43466	45670	.	+	.	ID=gene38;Name=azo0039;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0039
AM406670.1	EMBL	CDS	43466	45670	.	+	0	ID=cds38;Parent=gene38;Dbxref=EnsemblGenomes-Gn:azo0039,EnsemblGenomes-Tr:CAL92657,GOA:A1K1F2,InterPro:IPR003718,InterPro:IPR003776,InterPro:IPR015946,InterPro:IPR019938,UniProtKB/TrEMBL:A1K1F2,NCBI_GP:CAL92657.1;Name=CAL92657.1;Note=Conservd hypothetical protein%2C 79%25 identity(85%25 similarity) to TrEMBL%3BQ88GU7. Has PF02566%2C OsmC-like protein%3B IPR003718%3B Osmotically inducible protein C (OsmC) (P23929) is a stress -induced protein found in E. Coli. This family also contains a organic hydroperoxide detoxification protein (O68390) that has a novel pattern of oxidative stress regulation. Has PF02624%2C YcaO-like fatty acid binding protein%3BIPR003776%2C DUF181%3BThis is a family of proteins of unknown function.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92657.1;transl_table=11
AM406670.1	EMBL	gene	45701	46612	.	-	.	ID=gene39;Name=azo0040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0040
AM406670.1	EMBL	CDS	45701	46612	.	-	0	ID=cds39;Parent=gene39;Dbxref=EnsemblGenomes-Gn:azo0040,EnsemblGenomes-Tr:CAL92658,GOA:A1K1F3,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,UniProtKB/TrEMBL:A1K1F3,NCBI_GP:CAL92658.1;Name=CAL92658.1;Note=Putative AraC-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative AraC-family transcriptional regulator;protein_id=CAL92658.1;transl_table=11
AM406670.1	EMBL	gene	46800	47561	.	+	.	ID=gene40;Name=azo0041;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0041
AM406670.1	EMBL	CDS	46800	47561	.	+	0	ID=cds40;Parent=gene40;Dbxref=EnsemblGenomes-Gn:azo0041,EnsemblGenomes-Tr:CAL92659,GOA:A1K1F4,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K1F4,NCBI_GP:CAL92659.1;Name=CAL92659.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q9I376 (49%25 identity)%3B SWISSPROT:P50197 (44%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL92659.1;transl_table=11
AM406670.1	EMBL	gene	47901	48494	.	+	.	ID=gene41;Name=azo0042;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0042
AM406670.1	EMBL	CDS	47901	48494	.	+	0	ID=cds41;Parent=gene41;Dbxref=EnsemblGenomes-Gn:azo0042,EnsemblGenomes-Tr:CAL92660,InterPro:IPR008325,UniProtKB/TrEMBL:A1K1F5,NCBI_GP:CAL92660.1;Name=CAL92660.1;Note=Conserved hypothetical secreted protein. Homology to bll2189 of B. japonicum of 48%25 (trembl|Q89T61). Has PF06577%2C Protein of unknown function (DUF1134)%3BIPR008325%2CUCP033924%3B This family consists of several hypothetical bacterial proteins of unknown function. Signal peptide. TMH present in signal peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92660.1;transl_table=11
AM406670.1	EMBL	gene	48804	49574	.	-	.	ID=gene42;Name=azo0043;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0043
AM406670.1	EMBL	CDS	48804	49574	.	-	0	ID=cds42;Parent=gene42;Dbxref=EnsemblGenomes-Gn:azo0043,EnsemblGenomes-Tr:CAL92661,GOA:A1K1F6,InterPro:IPR005501,InterPro:IPR011330,NCBI_GP:CAL92661.1;Name=CAL92661.1;Note=Hypothetical UPF0271 protein PYRAB09930. This family includes LamB. The lam locus of Aspergillus nidulans consists of two divergently transcribed genes%2ClamA and lamB%2C involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression [1]. The exact molecular function of the proteins in this family is unknown. SPROT:Q89LH6: 47%25 identity%2C 62%25 similarity InterPro:IPR005501%3B LamB_YcsF. Pfam:PF03746%3B LamB_YcsF urease_gam: urease gamma subunit Nonsecretory protein with Signal peptide probability 0 No transmembrane helices%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92661.1;transl_table=11
AM406670.1	EMBL	gene	49571	50671	.	-	.	ID=gene43;Name=azo0044;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0044
AM406670.1	EMBL	CDS	49571	50671	.	-	0	ID=cds43;Parent=gene43;Dbxref=EnsemblGenomes-Gn:azo0044,EnsemblGenomes-Tr:CAL92662,GOA:A1K1F7,InterPro:IPR003778,InterPro:IPR029000,UniProtKB/TrEMBL:A1K1F7,NCBI_GP:CAL92662.1;Name=CAL92662.1;Note=Conserved hypothetical urea amidolyase-related protein. Homology to ybgK of E. coli of 36%25 (sprot|YBGK_ECOLI). InterPro: DUF183 (IPR003778) Uncharacterized domain in proteins of unknown function. This domain is found in a multifunctional enzyme%2C urea amidolyase%2C from yeast. Pfam: DFU182%2C uncharcterized ACR%2CCOG1984 no signal peptide no TMHs%3B~Function unclear;gbkey=CDS;product=conserved hypothetical urea amidolyase-related protein;protein_id=CAL92662.1;transl_table=11
AM406670.1	EMBL	gene	50668	51462	.	-	.	ID=gene44;Name=azo0045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0045
AM406670.1	EMBL	CDS	50668	51462	.	-	0	ID=cds44;Parent=gene44;Dbxref=EnsemblGenomes-Gn:azo0045,EnsemblGenomes-Tr:CAL92663,InterPro:IPR003833,InterPro:IPR010016,InterPro:IPR024946,InterPro:IPR029000,UniProtKB/TrEMBL:A1K1F8,NCBI_GP:CAL92663.1;Name=CAL92663.1;Note=Conserved hypothetical protein ybgJ. Homology to ybgJ of E. coli of 41%25 (sprot|YBGJ_ECOLI) InterPro: DUF213 (IPR003833) Pfam: DUF213%2C uncharacterized ACR%2C COG2049 no signal peptide no TMHs%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92663.1;transl_table=11
AM406670.1	EMBL	gene	51590	52516	.	-	.	ID=gene45;Name=dehH;gbkey=Gene;gene=dehH;gene_biotype=protein_coding;locus_tag=azo0046
AM406670.1	EMBL	CDS	51590	52516	.	-	0	ID=cds45;Parent=gene45;Dbxref=EnsemblGenomes-Gn:azo0046,EnsemblGenomes-Tr:CAL92664,GOA:A1K1F9,InterPro:IPR029058,UniProtKB/TrEMBL:A1K1F9,NCBI_GP:CAL92664.1;Name=CAL92664.1;Note=Hypothetical haloacetate dehalogenase H-1 (EC 3.8.1.3). Haloacetate + H(2)O %3D glycolate + halide TREMBL:Q8Y2S9: 58%25 identity%2C 67%25 similarity Gene name:dehH from Ralstonia solanacearum genome project. InterPro: Alpha/beta hydrolase fold InterPro:IPR000073%3B A/b_hydrolase. IPR000379: Ser_estrs. Pfam:PF00561%3B Abhydrolase_1 nadp_idh_euk: isocitrate dehydrogenase No TMH present absence of signal peptide.%3B~Family membership;gbkey=CDS;gene=dehH;product=haloacetate dehalogenase;protein_id=CAL92664.1;transl_table=11
AM406670.1	EMBL	gene	52582	53337	.	-	.	ID=gene46;Name=azo0047;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0047
AM406670.1	EMBL	CDS	52582	53337	.	-	0	ID=cds46;Parent=gene46;Dbxref=EnsemblGenomes-Gn:azo0047,EnsemblGenomes-Tr:CAL92665,InterPro:IPR019220,UniProtKB/TrEMBL:A1K1G0,NCBI_GP:CAL92665.1;Name=CAL92665.1;Note=Conserved hypothetical secreted protein Homology to pa4487 of P. aeruginosa of 52%25 (trembl|Q9HVT4(SRS)) no domains predicted signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92665.1;transl_table=11
AM406670.1	EMBL	gene	53315	54151	.	-	.	ID=gene47;Name=azo0048;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0048
AM406670.1	EMBL	CDS	53315	54151	.	-	0	ID=cds47;Parent=gene47;Dbxref=EnsemblGenomes-Gn:azo0048,EnsemblGenomes-Tr:CAL92666,InterPro:IPR019220,UniProtKB/TrEMBL:A1K1G1,NCBI_GP:CAL92666.1;Name=CAL92666.1;Note=Conserved hypothetical secreted protein. Homology to rsc3028 of R. solanacearum of 57%25 (trembl|Q8XV04(SRS)) no domains predicted signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92666.1;transl_table=11
AM406670.1	EMBL	gene	54285	56000	.	-	.	ID=gene48;Name=azo0049;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0049
AM406670.1	EMBL	CDS	54285	56000	.	-	0	ID=cds48;Parent=gene48;Dbxref=EnsemblGenomes-Gn:azo0049,EnsemblGenomes-Tr:CAL92667,InterPro:IPR013693,InterPro:IPR018748,UniProtKB/TrEMBL:A1K1G2,NCBI_GP:CAL92667.1;Name=CAL92667.1;Note=Conserved hypothetical secreted protein. Homology to PA4488 of P. aeruginosa of 47%25 (trembl|Q9HVT3(SRS)) No domains predicted. No TMHs. Singal Peptide Present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92667.1;transl_table=11
AM406670.1	EMBL	gene	56050	57162	.	-	.	ID=gene49;Name=phaZ;gbkey=Gene;gene=phaZ;gene_biotype=protein_coding;locus_tag=azo0050
AM406670.1	EMBL	CDS	56050	57162	.	-	0	ID=cds49;Parent=gene49;Dbxref=EnsemblGenomes-Gn:azo0050,EnsemblGenomes-Tr:CAL92668,GOA:A1K1G3,InterPro:IPR029058,UniProtKB/TrEMBL:A1K1G3,NCBI_GP:CAL92668.1;Name=CAL92668.1;Note=This protein degrades water-insoluble and water-soluble PHB to monomeric D(-)-3-hydroxybutyrate%2CTREMBL:Q9LBN6 (35%25 identity)%3B TREMBL:Q46334 (34%25 identity). SignalP predicting signal peptide.%3B~High confidence in function and specificity;gbkey=CDS;gene=phaZ;product=Poly (3-hydroxybutyrate) depolymerase;protein_id=CAL92668.1;transl_table=11
AM406670.1	EMBL	gene	57268	58020	.	-	.	ID=gene50;Name=azo0051;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0051
AM406670.1	EMBL	CDS	57268	58020	.	-	0	ID=cds50;Parent=gene50;Dbxref=EnsemblGenomes-Gn:azo0051,EnsemblGenomes-Tr:CAL92669,GOA:A1K1G4,InterPro:IPR006685,InterPro:IPR010920,UniProtKB/TrEMBL:A1K1G4,NCBI_GP:CAL92669.1;Name=CAL92669.1;Note=Conserved hypothetical membrane protein. Homology to ebA624 of Azoarcus sp. EbN1 of 52%25 (gnl|keqq|eba:ebA624(KEGG)) . no domains predicted. no signal peptide. 3 TMHs;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92669.1;transl_table=11
AM406670.1	EMBL	gene	58066	59952	.	+	.	ID=gene51;Name=azo0052;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0052
AM406670.1	EMBL	CDS	58066	59952	.	+	0	ID=cds51;Parent=gene51;Dbxref=EnsemblGenomes-Gn:azo0052,EnsemblGenomes-Tr:CAL92670,InterPro:IPR029058,InterPro:IPR029059,UniProtKB/TrEMBL:A1K1G5,NCBI_GP:CAL92670.1;Name=CAL92670.1;Note=Hypothetical secreted protein. No homology of the entire protein to the data bank. InterPro:Esterase/lipase/thioesterase family active site Pfam:Putative serine esterase (DUF676) This family of proteins are probably serine esterase type enzymes. Signal peptide present (Signal P predicted) No transmembrane helices.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL92670.1;transl_table=11
AM406670.1	EMBL	gene	59974	61287	.	-	.	ID=gene52;Name=rstB;gbkey=Gene;gene=rstB;gene_biotype=protein_coding;locus_tag=azo0053
AM406670.1	EMBL	CDS	59974	61287	.	-	0	ID=cds52;Parent=gene52;Dbxref=EnsemblGenomes-Gn:azo0053,EnsemblGenomes-Tr:CAL92671,GOA:A1K1G6,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1K1G6,NCBI_GP:CAL92671.1;Name=CAL92671.1;Note=Probable two component sensor histidine kinase%2C%3B~Specificity unclear;gbkey=CDS;gene=rstB;product=probable sensor histidine kinase;protein_id=CAL92671.1;transl_table=11
AM406670.1	EMBL	gene	61284	62054	.	-	.	ID=gene53;Name=rstA;gbkey=Gene;gene=rstA;gene_biotype=protein_coding;locus_tag=azo0054
AM406670.1	EMBL	CDS	61284	62054	.	-	0	ID=cds53;Parent=gene53;Dbxref=EnsemblGenomes-Gn:azo0054,EnsemblGenomes-Tr:CAL92672,GOA:A1K1G7,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K1G7,NCBI_GP:CAL92672.1;Name=CAL92672.1;Note=Two component response regulator%2C%3B~Specificity unclear;gbkey=CDS;gene=rstA;product=probable two-component response regulator;protein_id=CAL92672.1;transl_table=11
AM406670.1	EMBL	gene	62241	62975	.	+	.	ID=gene54;Name=azo0055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0055
AM406670.1	EMBL	CDS	62241	62975	.	+	0	ID=cds54;Parent=gene54;Dbxref=EnsemblGenomes-Gn:azo0055,EnsemblGenomes-Tr:CAL92673,GOA:A1K1G8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K1G8,NCBI_GP:CAL92673.1;Name=CAL92673.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:O54136 (41%25 identity)%3B TREMBL:Q8RCZ7 (40%25 identity). Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Family membership;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL92673.1;transl_table=11
AM406670.1	EMBL	gene	62972	64369	.	+	.	ID=gene55;Name=azo0056;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0056
AM406670.1	EMBL	CDS	62972	64369	.	+	0	ID=cds55;Parent=gene55;Dbxref=EnsemblGenomes-Gn:azo0056,EnsemblGenomes-Tr:CAL92674,GOA:A1K1G9,InterPro:IPR003838,InterPro:IPR025857,UniProtKB/TrEMBL:A1K1G9,NCBI_GP:CAL92674.1;Name=CAL92674.1;Note=Conserved hypothetical membrane protein. Homology to cv3942 of C. violaceum of 30%25 (trembl|Q7NR42) InterPro: DUF214 (IPR003838) Pfam: Predicted permease This is a family of predicted permeases and hypothetical transmembrane proteins. One member has been shown to transport lipids targeted to the outer membrane across the inner membrane%2C a step which requires ATP. Signal peptide 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92674.1;transl_table=11
AM406670.1	EMBL	gene	64362	65171	.	+	.	ID=gene56;Name=azo0057;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0057
AM406670.1	EMBL	CDS	64362	65171	.	+	0	ID=cds56;Parent=gene56;Dbxref=EnsemblGenomes-Gn:azo0057,EnsemblGenomes-Tr:CAL92675,InterPro:IPR006311,InterPro:IPR011220,UniProtKB/TrEMBL:A1K1H0,NCBI_GP:CAL92675.1;Name=CAL92675.1;Note=Conserved hypothetical secreted protein. Homology to BPSS2323 of Burkholderia pseudomallei of 45%25 (trembl:Q63HU7). no domains predicted. singal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92675.1;transl_table=11
AM406670.1	EMBL	gene	65168	66349	.	+	.	ID=gene57;Name=azo0058;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0058
AM406670.1	EMBL	CDS	65168	66349	.	+	0	ID=cds57;Parent=gene57;Dbxref=EnsemblGenomes-Gn:azo0058,EnsemblGenomes-Tr:CAL92676,UniProtKB/TrEMBL:A1K1H1,NCBI_GP:CAL92676.1;Name=CAL92676.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide TMHs inside of the signal peptide.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL92676.1;transl_table=11
AM406670.1	EMBL	gene	66440	71053	.	-	.	ID=gene58;Name=azo0059;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0059
AM406670.1	EMBL	CDS	66440	71053	.	-	0	ID=cds58;Parent=gene58;Dbxref=EnsemblGenomes-Gn:azo0059,EnsemblGenomes-Tr:CAL92677,GOA:A1K1H2,InterPro:IPR001599,InterPro:IPR002890,InterPro:IPR008930,InterPro:IPR011625,InterPro:IPR019565,UniProtKB/TrEMBL:A1K1H2,NCBI_GP:CAL92677.1;Name=CAL92677.1;Note=Conserved hypothetical secreted protein. Homology to rsc3030 of R. solanacearum of 48%25 (sprot|YU30_RALSO) Pfam: Alpha-2-macroglobulin family Nterminal region (PF01835%2C PF07703) signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92677.1;transl_table=11
AM406670.1	EMBL	gene	71064	71747	.	-	.	ID=gene59;Name=azo0060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0060
AM406670.1	EMBL	CDS	71064	71747	.	-	0	ID=cds59;Parent=gene59;Dbxref=EnsemblGenomes-Gn:azo0060,EnsemblGenomes-Tr:CAL92678,InterPro:IPR009558,UniProtKB/TrEMBL:A1K1H3,NCBI_GP:CAL92678.1;Name=CAL92678.1;Note=Conserved hypothetical secreted protein. Homology to RS04726 of R. solanacearum of 55%25 (trembl|Q8XV01(SRS)) Has PF06672%3B(IPR009558)Protein of unknown function (DUF1175):This family consists of several hypothetical bacterial proteins of around 210 residues in length. The function of this family is unknown. No TMHs signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92678.1;transl_table=11
AM406670.1	EMBL	gene	71744	73438	.	-	.	ID=gene60;Name=azo0061;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0061
AM406670.1	EMBL	CDS	71744	73438	.	-	0	ID=cds60;Parent=gene60;Dbxref=EnsemblGenomes-Gn:azo0061,EnsemblGenomes-Tr:CAL92679,InterPro:IPR018671,UniProtKB/TrEMBL:A1K1H4,NCBI_GP:CAL92679.1;Name=CAL92679.1;Note=Conserved hypothetical secreted protein. Homology to RS04725 of Ralstonia solanacearum of 43%25 (trembl|Q8XV00(SRS)) No domains predicted. Signal Peptide Present. NO TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92679.1;transl_table=11
AM406670.1	EMBL	gene	73627	75072	.	+	.	ID=gene61;Name=azo0062;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0062
AM406670.1	EMBL	CDS	73627	75072	.	+	0	ID=cds61;Parent=gene61;Dbxref=EnsemblGenomes-Gn:azo0062,EnsemblGenomes-Tr:CAL92680,UniProtKB/TrEMBL:A1K1H5,NCBI_GP:CAL92680.1;Name=CAL92680.1;Note=Conserved hypothetical protein. Homology to MCA0287 of Methylococcus capsulatus of 48%25 (trembl:Q60C24). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92680.1;transl_table=11
AM406670.1	EMBL	gene	75089	75535	.	+	.	ID=gene62;Name=azo0063;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0063
AM406670.1	EMBL	CDS	75089	75535	.	+	0	ID=cds62;Parent=gene62;Dbxref=EnsemblGenomes-Gn:azo0063,EnsemblGenomes-Tr:CAL92681,UniProtKB/TrEMBL:A1K1H6,NCBI_GP:CAL92681.1;Name=CAL92681.1;Note=Hypothetical protein. No good homology to the data bank. No domains predicted. No TMHs Probable signal peptide.;gbkey=CDS;product=hypothetical protein;protein_id=CAL92681.1;transl_table=11
AM406670.1	EMBL	gene	75546	76649	.	-	.	ID=gene63;Name=azo0064;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0064
AM406670.1	EMBL	CDS	75546	76649	.	-	0	ID=cds63;Parent=gene63;Dbxref=EnsemblGenomes-Gn:azo0064,EnsemblGenomes-Tr:CAL92682,InterPro:IPR002549,UniProtKB/TrEMBL:A1K1H7,NCBI_GP:CAL92682.1;Name=CAL92682.1;Note=Hypothetical protein ydiK.Integral membrane protein (potential). similarity:belongs to the upf0118 (perm) family TREMBL:Q7WQ94: 68%25 identity%3B 81%25 similarity. PIR:AD2790%3B AD2790.C97569%3B C97569. InterPro:IPR000585%3B Hemopexin. IPR002549%3B UPF0118. Pfam: PF01594%3B UPF0118%3B 2A0604s01: protein-export membrane pro Pfam: presence of DUF20 domain and branched chain amino acid transport. TIGRFAM: general nitrate transport. Signal P predicted signal peptide and TMHMM predicted transmembrane helices.%3B~Function unclear;gbkey=CDS;product=probable permease;protein_id=CAL92682.1;transl_table=11
AM406670.1	EMBL	gene	76751	77287	.	-	.	ID=gene64;Name=azo0065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0065
AM406670.1	EMBL	CDS	76751	77287	.	-	0	ID=cds64;Parent=gene64;Dbxref=EnsemblGenomes-Gn:azo0065,EnsemblGenomes-Tr:CAL92683,InterPro:IPR021332,UniProtKB/TrEMBL:A1K1H8,NCBI_GP:CAL92683.1;Name=CAL92683.1;Note=64%25 similarity with ABC-type multidrug transport system%2C ATPase and permease components [Dechloromonas aromatica RCB]. and;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92683.1;transl_table=11
AM406670.1	EMBL	gene	77284	78402	.	-	.	ID=gene65;Name=azo0066;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0066
AM406670.1	EMBL	CDS	77284	78402	.	-	0	ID=cds65;Parent=gene65;Dbxref=EnsemblGenomes-Gn:azo0066,EnsemblGenomes-Tr:CAL92684,GOA:A1K1H9,InterPro:IPR001753,InterPro:IPR014748,InterPro:IPR029045,UniProtKB/TrEMBL:A1K1H9,NCBI_GP:CAL92684.1;Name=CAL92684.1;Note=Enoyl-CoA hydratase and 3-2trans-enoyl-CoA isomerase are two enzymes involved in fatty acid metabolism. ECH catalyzes the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA and ECI shifts the 3- double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position.In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA)%2C ECH and ECI are also part of a multifunctional enzyme which contains both a HCDH and a 3-hydroxybutyryl-CoA epimerase domain. InterPro: Enoyl-CoA hydratase/isomerase Entry name TREMBL:Q8PMW0 Prim. accession # Q8PMW0 InterPro IPR001753%3B EnCoA_hydrtse. Pfam PF00378%3B ECH%3B 1 Identities %3D 169/379 (44%25) Number of predicted TMHs: 0 Signal peptide probability: 0.000%3B~Family membership;gbkey=CDS;product=probable enoyl-CoA hydratase/isomerase;protein_id=CAL92684.1;transl_table=11
AM406670.1	EMBL	gene	78461	79156	.	+	.	ID=gene66;Name=polC;gbkey=Gene;gene=polC;gene_biotype=protein_coding;locus_tag=azo0067
AM406670.1	EMBL	CDS	78461	79156	.	+	0	ID=cds66;Parent=gene66;Dbxref=EnsemblGenomes-Gn:azo0067,EnsemblGenomes-Tr:CAL92685,GOA:A1K1I0,InterPro:IPR006054,InterPro:IPR006055,InterPro:IPR012337,InterPro:IPR013520,UniProtKB/TrEMBL:A1K1I0,NCBI_GP:CAL92685.1;Name=CAL92685.1;Note=DNA polymerase III polC-type (EC 2.7.7.7) (PolIII). Required for replicative DNA synthesis. This DNA polymerase also exhibits 3 to 5 exonuclease activity (By similarity). InterPro: Exonuclease dnaq: DNA polymerase III epsilon subun%3B~High confidence in function and specificity;gbkey=CDS;gene=polC;product=DNA-directed DNA polymerase;protein_id=CAL92685.1;transl_table=11
AM406670.1	EMBL	gene	79164	79916	.	-	.	ID=gene67;Name=azo0068;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0068
AM406670.1	EMBL	CDS	79164	79916	.	-	0	ID=cds67;Parent=gene67;Dbxref=EnsemblGenomes-Gn:azo0068,EnsemblGenomes-Tr:CAL92686,GOA:A1K1I1,InterPro:IPR009097,UniProtKB/TrEMBL:A1K1I1,NCBI_GP:CAL92686.1;Name=CAL92686.1;Note=Hypothetical protein. No good homology with any hits of this length protein. No Domains/Features/motifs/signal peptide present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL92686.1;transl_table=11
AM406670.1	EMBL	gene	80013	80393	.	+	.	ID=gene68;Name=azo0069;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0069
AM406670.1	EMBL	CDS	80013	80393	.	+	0	ID=cds68;Parent=gene68;Dbxref=EnsemblGenomes-Gn:azo0069,EnsemblGenomes-Tr:CAL92687,GOA:A1K1I2,InterPro:IPR001486,InterPro:IPR009050,InterPro:IPR012292,UniProtKB/TrEMBL:A1K1I2,NCBI_GP:CAL92687.1;Name=CAL92687.1;Note=Conserved hypothetical globin-like protein. Homology to rpa2719 of R. palustris of 46%25 (tremblnew|CAE28161). Interpro: IPR009050 Globin-like. Globins are heme-containing proteins involved in binding and/or transporting oxygen. This family of heme binding proteins are found mainly in bacteria. No signal peptide. No TMHs%3B~Function unclear;gbkey=CDS;product=conserved hypothetical globin-like protein;protein_id=CAL92687.1;transl_table=11
AM406670.1	EMBL	gene	80397	80645	.	-	.	ID=gene69;Name=azo0070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0070
AM406670.1	EMBL	CDS	80397	80645	.	-	0	ID=cds69;Parent=gene69;Dbxref=EnsemblGenomes-Gn:azo0070,EnsemblGenomes-Tr:CAL92688,UniProtKB/TrEMBL:A1K1I3,NCBI_GP:CAL92688.1;Name=CAL92688.1;Note=Hypothetical membrane protein. no homology to the data bank. no domains predicted.signal peptide. 1 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL92688.1;transl_table=11
AM406670.1	EMBL	gene	80784	82139	.	+	.	ID=gene70;Name=azo0071;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0071
AM406670.1	EMBL	CDS	80784	82139	.	+	0	ID=cds70;Parent=gene70;Dbxref=EnsemblGenomes-Gn:azo0071,EnsemblGenomes-Tr:CAL92689,GOA:A1K1I4,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K1I4,NCBI_GP:CAL92689.1;Name=CAL92689.1;Note=Sigma-54 dependent response regulator%2C%3B~Specificity unclear;gbkey=CDS;product=sigma-54 dependent response regulator;protein_id=CAL92689.1;transl_table=11
AM406670.1	EMBL	gene	82158	84344	.	+	.	ID=gene71;Name=azo0072;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0072
AM406670.1	EMBL	CDS	82158	84344	.	+	0	ID=cds71;Parent=gene71;Dbxref=EnsemblGenomes-Gn:azo0072,EnsemblGenomes-Tr:CAL92690,GOA:A1K1I5,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR029151,UniProtKB/TrEMBL:A1K1I5,NCBI_GP:CAL92690.1;Name=CAL92690.1;Note=Putative two component sensor histidine kinase%2C%3B~Specificity unclear;gbkey=CDS;product=putative sensor histidine kinase;protein_id=CAL92690.1;transl_table=11
AM406670.1	EMBL	gene	84372	85583	.	+	.	ID=gene72;Name=azo0073;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0073
AM406670.1	EMBL	CDS	84372	85583	.	+	0	ID=cds72;Parent=gene72;Dbxref=EnsemblGenomes-Gn:azo0073,EnsemblGenomes-Tr:CAL92691,GOA:A1K1I6,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K1I6,NCBI_GP:CAL92691.1;Name=CAL92691.1;Note=Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Probable sugar-proton symporter transmembrane protein ProP proline/betaine transporter. Low homology to the hypothetical protein ycxA (ORF5)involved in the biosynthesis of the pepitde antibiotic Bacitracin in B. subtilis. Signal peptide%3B~Specificity unclear;gbkey=CDS;product=putative MFS permease;protein_id=CAL92691.1;transl_table=11
AM406670.1	EMBL	gene	85691	87382	.	+	.	ID=gene73;Name=azo0074;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0074
AM406670.1	EMBL	CDS	85691	87382	.	+	0	ID=cds73;Parent=gene73;Dbxref=EnsemblGenomes-Gn:azo0074,EnsemblGenomes-Tr:CAL92692,InterPro:IPR002035,InterPro:IPR021908,InterPro:IPR022156,UniProtKB/TrEMBL:A1K1I7,NCBI_GP:CAL92692.1;Name=CAL92692.1;Note=Hypothetical protein yfbK. The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders [1]. In von Willebrand factor%2C the type A domain (vWF) is the prototype for a protein superfamily. trembl:Q8P6Q2: 55%25 identity%3B 66%25 similarity InterPro:IPR002016%3B Peroxidase. IPR002035%3B VWF_A. Pfam: PF00092%3B VWA%3B 1. SMART: SM00327%3B VWA%3B 1. cdhD: CO dehydrogenase/acetyl-CoA syn Signal peptide present (0.927 probability)%3B SignalP predicted. No transmembrane helices (TMHMM predicted).%3B~Function unclear;gbkey=CDS;product=conseved hypothetical exported protein;protein_id=CAL92692.1;transl_table=11
AM406670.1	EMBL	gene	87379	87978	.	+	.	ID=gene74;Name=rpoE;gbkey=Gene;gene=rpoE;gene_biotype=protein_coding;locus_tag=azo0075
AM406670.1	EMBL	CDS	87379	87978	.	+	0	ID=cds74;Parent=gene74;Dbxref=EnsemblGenomes-Gn:azo0075,EnsemblGenomes-Tr:CAL92693,GOA:A1K1I8,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR011991,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:A1K1I8,NCBI_GP:CAL92693.1;Name=CAL92693.1;Note=Probable RNA polymerase sigma-E factor (sigma-24)%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=rpoE;product=probable RNA polymerase sigma-E factor (sigma-24);protein_id=CAL92693.1;transl_table=11
AM406670.1	EMBL	gene	87975	88751	.	+	.	ID=gene75;Name=azo0076;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0076
AM406670.1	EMBL	CDS	87975	88751	.	+	0	ID=cds75;Parent=gene75;Dbxref=EnsemblGenomes-Gn:azo0076,EnsemblGenomes-Tr:CAL92694,UniProtKB/TrEMBL:A1K1I9,NCBI_GP:CAL92694.1;Name=CAL92694.1;Note=Conserved hypothetical membrane protein. Homology to BB3269 of Bordetella bronchiseptica of 31%25 (trembl|Q7WHD9(SRS)). No domains predicted. no signal peptide 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92694.1;transl_table=11
AM406670.1	EMBL	gene	88772	88993	.	-	.	ID=gene76;Name=azo0077;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0077
AM406670.1	EMBL	CDS	88772	88993	.	-	0	ID=cds76;Parent=gene76;Dbxref=EnsemblGenomes-Gn:azo0077,EnsemblGenomes-Tr:CAL92695,UniProtKB/TrEMBL:A1K1J0,NCBI_GP:CAL92695.1;Name=CAL92695.1;Note=Hypothetical protein. No Good homologs. No Domains/Features/Motifs reported present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL92695.1;transl_table=11
AM406670.1	EMBL	gene	89004	89966	.	-	.	ID=gene77;Name=azo0078;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0078
AM406670.1	EMBL	CDS	89004	89966	.	-	0	ID=cds77;Parent=gene77;Dbxref=EnsemblGenomes-Gn:azo0078,EnsemblGenomes-Tr:CAL92696,UniProtKB/TrEMBL:A1K1J1,NCBI_GP:CAL92696.1;Name=CAL92696.1;Note=Hypothetical protein. Weak homology with hits over entire length. PS50821%3B PAZ domain present(Prosite);gbkey=CDS;product=Hypothetical protein;protein_id=CAL92696.1;transl_table=11
AM406670.1	EMBL	gene	90144	91352	.	-	.	ID=gene78;Name=rtcB;gbkey=Gene;gene=rtcB;gene_biotype=protein_coding;locus_tag=azo0079
AM406670.1	EMBL	CDS	90144	91352	.	-	0	ID=cds78;Parent=gene78;Dbxref=EnsemblGenomes-Gn:azo0079,EnsemblGenomes-Tr:CAL92697,GOA:A1K1J2,InterPro:IPR001233,UniProtKB/TrEMBL:A1K1J2,NCBI_GP:CAL92697.1;Name=CAL92697.1;Note=rtcB protein%2C 57%25 identical(70%25 similairty) to TrEMBL%3BQ7NZ85 TrEMBL%3BQ8FCS7(56%25 identity). Has IPR001233%3BUPF0027(PF01139%2C Uncharacterized protein family):A number of uncharacterized proteins including Escherichia coli rtcB%2C Mycobacterium tuberculosis MtCY441.01.%2C Caenorhabditis elegans F16A11.2 and Methanococcus jannaschii MJ0682 belong to this family. Has no Signal peptide or TMH present.%3B~High confidence in function and specificity;gbkey=CDS;gene=rtcB;product=rtcB protein;protein_id=CAL92697.1;transl_table=11
AM406670.1	EMBL	gene	91812	93434	.	+	.	ID=gene79;Name=prfC;gbkey=Gene;gene=prfC;gene_biotype=protein_coding;locus_tag=azo0080
AM406670.1	EMBL	CDS	91812	93434	.	+	0	ID=cds79;Parent=gene79;Dbxref=EnsemblGenomes-Gn:azo0080,EnsemblGenomes-Tr:CAL92698,GOA:A1K1J3,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR004548,InterPro:IPR005225,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR027417,UniProtKB/TrEMBL:A1K1J3,NCBI_GP:CAL92698.1;Name=CAL92698.1;Note=Peptide chain release factor 3 (RF-3). Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP but not by GMP%3B~High confidence in function and specificity;gbkey=CDS;gene=prfC;product=peptide chain release factor;protein_id=CAL92698.1;transl_table=11
AM406670.1	EMBL	gene	93454	93981	.	+	.	ID=gene80;Name=azo0081;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0081
AM406670.1	EMBL	CDS	93454	93981	.	+	0	ID=cds80;Parent=gene80;Dbxref=EnsemblGenomes-Gn:azo0081,EnsemblGenomes-Tr:CAL92699,InterPro:IPR011969,InterPro:IPR021109,UniProtKB/TrEMBL:A1K1J4,NCBI_GP:CAL92699.1;Name=CAL92699.1;Note=Conserved hypothetical membrane protein. Homology to pa4965 ao P. aeruginosa of 50%25 (trembl|Q9HUK0) Pfam: Retroviral aspartyl protease no signal peptide 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92699.1;transl_table=11
AM406670.1	EMBL	gene	94431	95405	.	-	.	ID=gene81;Name=rdgC;gbkey=Gene;gene=rdgC;gene_biotype=protein_coding;locus_tag=azo0082
AM406670.1	EMBL	CDS	94431	95405	.	-	0	ID=cds81;Parent=gene81;Dbxref=EnsemblGenomes-Gn:azo0082,EnsemblGenomes-Tr:CAL92700,GOA:A1K1J5,InterPro:IPR007476,UniProtKB/TrEMBL:A1K1J5,NCBI_GP:CAL92700.1;Name=CAL92700.1;Note=Recombination associated protein rdgC. Not known%3B may be involved in recombination (By similarity). hemC: porphobilinogen deaminase.%3B~High confidence in function and specificity;gbkey=CDS;gene=rdgC;product=recombination associated protein RdgC;protein_id=CAL92700.1;transl_table=11
AM406670.1	EMBL	gene	95476	95943	.	-	.	ID=gene82;Name=azo0083;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0083
AM406670.1	EMBL	CDS	95476	95943	.	-	0	ID=cds82;Parent=gene82;Dbxref=EnsemblGenomes-Gn:azo0083,EnsemblGenomes-Tr:CAL92701,InterPro:IPR015075,InterPro:IPR023393,UniProtKB/TrEMBL:A1K1J6,NCBI_GP:CAL92701.1;Name=CAL92701.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92701.1;transl_table=11
AM406670.1	EMBL	gene	96022	96768	.	+	.	ID=gene83;Name=rsuA;gbkey=Gene;gene=rsuA;gene_biotype=protein_coding;locus_tag=azo0084
AM406670.1	EMBL	CDS	96022	96768	.	+	0	ID=cds83;Parent=gene83;Dbxref=EnsemblGenomes-Gn:azo0084,EnsemblGenomes-Tr:CAL92702,GOA:A1K1J7,InterPro:IPR000748,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR018496,InterPro:IPR020103,UniProtKB/TrEMBL:A1K1J7,NCBI_GP:CAL92702.1;Name=CAL92702.1;Note=Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-516 in 16S ribosomal RNA.%3B~Family membership;gbkey=CDS;gene=rsuA;product=pseudouridylate synthase;protein_id=CAL92702.1;transl_table=11
AM406670.1	EMBL	gene	97020	98186	.	+	.	ID=gene84;Name=azo0085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0085
AM406670.1	EMBL	CDS	97020	98186	.	+	0	ID=cds84;Parent=gene84;Dbxref=EnsemblGenomes-Gn:azo0085,EnsemblGenomes-Tr:CAL92703,InterPro:IPR016633,UniProtKB/TrEMBL:A1K1J8,NCBI_GP:CAL92703.1;Name=CAL92703.1;Note=Conserved hypothetical protein. Homology to RS04117 of R.solanacearum of 52%25 (tremble:Q8Y0H4) No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92703.1;transl_table=11
AM406670.1	EMBL	gene	98247	98804	.	+	.	ID=gene85;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;locus_tag=azo0086
AM406670.1	EMBL	CDS	98247	98804	.	+	0	ID=cds85;Parent=gene85;Dbxref=EnsemblGenomes-Gn:azo0086,EnsemblGenomes-Tr:CAL92704,GOA:A1K1J9,InterPro:IPR001059,InterPro:IPR008991,InterPro:IPR011768,InterPro:IPR012340,InterPro:IPR013185,InterPro:IPR013852,InterPro:IPR014722,InterPro:IPR015365,InterPro:IPR020599,NCBI_GP:CAL92704.1;Name=CAL92704.1;Note=Elongation factor P (EF-P). Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA thus increasing their reactivity as acceptors for peptidyl transferase.%3B~High confidence in function and specificity;gbkey=CDS;gene=efp;product=putative elongation factor P;protein_id=CAL92704.1;transl_table=11
AM406670.1	EMBL	gene	98928	99359	.	+	.	ID=gene86;Name=azo0087;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0087
AM406670.1	EMBL	CDS	98928	99359	.	+	0	ID=cds86;Parent=gene86;Dbxref=EnsemblGenomes-Gn:azo0087,EnsemblGenomes-Tr:CAL92705,UniProtKB/TrEMBL:A1K1K0,NCBI_GP:CAL92705.1;Name=CAL92705.1;Note=Hypothetical secreted protein. Homology to RS00193 of R. solanacearum of 26%25 (tremble:Q8XVC9) PF02987%2C Late embryogenesis abundant protein%3BIPR004238%3BDifferent types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. No TMHs Signal peptide present;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL92705.1;transl_table=11
AM406670.1	EMBL	gene	99435	105044	.	+	.	ID=gene87;Name=uvrA1;gbkey=Gene;gene=uvrA1;gene_biotype=protein_coding;locus_tag=azo0088
AM406670.1	EMBL	CDS	99435	105044	.	+	0	ID=cds87;Parent=gene87;Dbxref=EnsemblGenomes-Gn:azo0088,EnsemblGenomes-Tr:CAL92706,GOA:A1K1K1,InterPro:IPR003593,InterPro:IPR004602,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K1K1,NCBI_GP:CAL92706.1;Name=CAL92706.1;Note=UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A). The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB the uvrA molecules dissociate (By similarity). InterPro: Excinuclease ABC A subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=uvrA1;product=putative excinuclease ABC subunit;protein_id=CAL92706.1;transl_table=11
AM406670.1	EMBL	gene	105090	105788	.	+	.	ID=gene88;Name=azo0089;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0089
AM406670.1	EMBL	CDS	105090	105788	.	+	0	ID=cds88;Parent=gene88;Dbxref=EnsemblGenomes-Gn:azo0089,EnsemblGenomes-Tr:CAL92707,GOA:A1K1K2,InterPro:IPR016174,UniProtKB/TrEMBL:A1K1K2,NCBI_GP:CAL92707.1;Name=CAL92707.1;Note=Conserved hypothetical hydrogenase cytochrome b-type subunit. Homology to C. vinosum of 56%25 (trembl|Q46471). Involved in electron transfer from hydrogen to oxygen. probable signal peptide probable 4 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical hydrogenase cytochrome b-type subunit;protein_id=CAL92707.1;transl_table=11
AM406670.1	EMBL	gene	105850	106314	.	-	.	ID=gene89;Name=cycA1;gbkey=Gene;gene=cycA1;gene_biotype=protein_coding;locus_tag=azo0090
AM406670.1	EMBL	CDS	105850	106314	.	-	0	ID=cds89;Parent=gene89;Dbxref=EnsemblGenomes-Gn:azo0090,EnsemblGenomes-Tr:CAL92708,GOA:A1K1K3,InterPro:IPR002321,InterPro:IPR010980,InterPro:IPR012127,InterPro:IPR015984,UniProtKB/TrEMBL:A1K1K3,NCBI_GP:CAL92708.1;Name=CAL92708.1;Note=Probable cytochrome c'. Homology to cycA of C. vinosum of 61%25 (sprot|CYCP_CHRVI). CYTOCHROME C IS THE MOST WIDELY OCCURRING BACTERIAL C-TYPE CYTOCHROME. CYTOCHROMES C ARE HIGH-SPIN PROTEINS AND THE HEME HAS NO SIXTH LIGAND. THEIR EXACT FUNCTION IS NOT KNOWN. Pfam: Cytochrome c. signal peptide no TMHs%3B~Function unclear;gbkey=CDS;gene=cycA1;product=probable cytochrome c';protein_id=CAL92708.1;transl_table=11
AM406670.1	EMBL	gene	106574	108199	.	+	.	ID=gene90;Name=azo0091;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0091
AM406670.1	EMBL	CDS	106574	108199	.	+	0	ID=cds90;Parent=gene90;Dbxref=EnsemblGenomes-Gn:azo0091,EnsemblGenomes-Tr:CAL92709,GOA:A1K1K4,InterPro:IPR003660,InterPro:IPR004089,UniProtKB/TrEMBL:A1K1K4,NCBI_GP:CAL92709.1;Name=CAL92709.1;Note=Methyl-accepting chemotaxis protein%2C%3B~Specificity unclear;gbkey=CDS;product=probable methyl-accepting chemotaxis protein;protein_id=CAL92709.1;transl_table=11
AM406670.1	EMBL	gene	108207	109646	.	-	.	ID=gene91;Name=mucD1;gbkey=Gene;gene=mucD1;gene_biotype=protein_coding;locus_tag=azo0092
AM406670.1	EMBL	CDS	108207	109646	.	-	0	ID=cds91;Parent=gene91;Dbxref=EnsemblGenomes-Gn:azo0092,EnsemblGenomes-Tr:CAL92710,GOA:A1K1K5,InterPro:IPR001478,InterPro:IPR001940,InterPro:IPR009003,InterPro:IPR011782,UniProtKB/TrEMBL:A1K1K5,NCBI_GP:CAL92710.1;Name=CAL92710.1;Note=Probable serine protease. Homology to mucD of P. aeruginosa of 55%25 (AAC43718). Pfam: Trypsin%3B PDZ domain (also known as DHR or GLGF) signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=mucD1;product=probable serine protease MucD;protein_id=CAL92710.1;transl_table=11
AM406670.1	EMBL	gene	109778	111763	.	-	.	ID=gene92;Name=irgA1;gbkey=Gene;gene=irgA1;gene_biotype=protein_coding;locus_tag=azo0093
AM406670.1	EMBL	CDS	109778	111763	.	-	0	ID=cds92;Parent=gene92;Dbxref=EnsemblGenomes-Gn:azo0093,EnsemblGenomes-Tr:CAL92711,GOA:A1K1K6,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1K1K6,NCBI_GP:CAL92711.1;Name=CAL92711.1;Note=23%25 TonB_boxC. Pfam:PF00593%3B TonB_dep_Rec%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=irgA1;product=putative TonB-dependent receptor;protein_id=CAL92711.1;transl_table=11
AM406670.1	EMBL	gene	111975	112913	.	+	.	ID=gene93;Name=oxyR;gbkey=Gene;gene=oxyR;gene_biotype=protein_coding;locus_tag=azo0094
AM406670.1	EMBL	CDS	111975	112913	.	+	0	ID=cds93;Parent=gene93;Dbxref=EnsemblGenomes-Gn:azo0094,EnsemblGenomes-Tr:CAL92712,GOA:A1K1K7,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K1K7,NCBI_GP:CAL92712.1;Name=CAL92712.1;Note=oxyR%2C Hydrogen peroxide-inducible genes activator. BELONGS TO THE LYSR FAMILY OF TRANSCRIPTIONAL REGULATORS REQUIRED FOR THE INDUCTION OF A REGULON OF HYDROGEN PEROXIDE INDUCIBLE GENES SUCH AS CATALASE GLUTATHIONE-REDUCTASE ETC. (BY SIMILARITY). mreB: cell shape determining protein M 51%25 HTH_LysR. IPR005119%3B LysR_subst. IPR009058%3B Wing_hlx_DNA_bnd. PF00126%3B HTH_1%3B 1. PF03466%3B LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~High confidence in function and specificity;gbkey=CDS;gene=oxyR;product=putative oxyR;protein_id=CAL92712.1;transl_table=11
AM406670.1	EMBL	gene	112981	115554	.	-	.	ID=gene94;Name=azo0095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0095
AM406670.1	EMBL	CDS	112981	115554	.	-	0	ID=cds94;Parent=gene94;Dbxref=EnsemblGenomes-Gn:azo0095,EnsemblGenomes-Tr:CAL92713,GOA:A1K1K8,InterPro:IPR000380,InterPro:IPR003601,InterPro:IPR003602,InterPro:IPR005738,InterPro:IPR006171,InterPro:IPR013497,InterPro:IPR013824,InterPro:IPR013825,InterPro:IPR023405,InterPro:IPR023406,InterPro:IPR025589,UniProtKB/TrEMBL:A1K1K8,NCBI_GP:CAL92713.1;Name=CAL92713.1;Note=DNA topoisomerase I (EC 5.99.1.2) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase). THE REACTION CATALYZED BY TOPOISOMERASES LEADS TO THE CONVERSION OF ONE TOPOLOGICAL ISOMER OF DNA TO ANOTHER. MAY PLAY AN IMPORTANT ROLE IN EITHER THE MAINTENANCE OF OR EXPRESSION FROM THE VIRULENCE PLASMID. ITS INFLUENCE ON EXPRESSION COULD BE SPECIFIC TUNING LOCAL SUPERHELICITY OR MORE GENERALLY MODIFYING THE SUPERHELICITY OF THE ENTIRE PLASMID IN RESPONSE TO ENVIRONMENTAL STIMULI THUS COULD BE A FUNDAMENTAL FACTOR INVOLVED IN VIRULENCE. InterPro: Prokaryotic DNA topoisomerase I%3B~High confidence in function and specificity;gbkey=CDS;product=DNA topoisomerase III;protein_id=CAL92713.1;transl_table=11
AM406670.1	EMBL	gene	115666	116133	.	-	.	ID=gene95;Name=azo0096;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0096
AM406670.1	EMBL	CDS	115666	116133	.	-	0	ID=cds95;Parent=gene95;Dbxref=EnsemblGenomes-Gn:azo0096,EnsemblGenomes-Tr:CAL92714,InterPro:IPR007456,InterPro:IPR011991,NCBI_GP:CAL92714.1;Name=CAL92714.1;Note=Protein smg homolog%2C 45%25 identity (65%25 similarity) to SwissProt%3BP30853 43%25 identity to SwissProt%3BQ8X8F6%2CE.coli smg protein. Has PF04361(IPR007456):Protein of unknown function (DUF494)%3BMembers of this family of uncharacterised proteins are often named Smg. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92714.1;transl_table=11
AM406670.1	EMBL	gene	116194	117312	.	-	.	ID=gene96;Name=drpA;gbkey=Gene;gene=drpA;gene_biotype=protein_coding;locus_tag=azo0097
AM406670.1	EMBL	CDS	116194	117312	.	-	0	ID=cds96;Parent=gene96;Dbxref=EnsemblGenomes-Gn:azo0097,EnsemblGenomes-Tr:CAL92715,GOA:A1K1L0,InterPro:IPR003488,InterPro:IPR010994,UniProtKB/TrEMBL:A1K1L0,NCBI_GP:CAL92715.1;Name=CAL92715.1;Note=Putative DNA processing protein DrpA (Smf protein). Homology to drpA of H. influcenzae The SMF family (DNA processing chain A%2C dprA) are a group of bacterial proteins. In Helicobacter pylori%2C dprA is required for natural chromosomal and plasmid transformation InterPro: SMF family Tigerfam: dprA: DNA processing protein DprA%2Cputative Pfam SMF family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=drpA;product=putative DNA processing protein DrpA;protein_id=CAL92715.1;transl_table=11
AM406670.1	EMBL	gene	117316	118503	.	-	.	ID=gene97;Name=azo0098;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0098
AM406670.1	EMBL	CDS	117316	118503	.	-	0	ID=cds97;Parent=gene97;Dbxref=EnsemblGenomes-Gn:azo0098,EnsemblGenomes-Tr:CAL92716,InterPro:IPR018392,UniProtKB/TrEMBL:A1K1L1,NCBI_GP:CAL92716.1;Name=CAL92716.1;Note=Conseved hypothetical membrane protein. Homology to RSO2271 of R. solanacearum of 36%25 (trembl|Q8Y3B1(SRS)). Pfam: Lysin motif (SM00257) This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. No signal peptide 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92716.1;transl_table=11
AM406670.1	EMBL	gene	118530	119033	.	+	.	ID=gene98;Name=def1;gbkey=Gene;gene=def1;gene_biotype=protein_coding;locus_tag=azo0099
AM406670.1	EMBL	CDS	118530	119033	.	+	0	ID=cds98;Parent=gene98;Dbxref=EnsemblGenomes-Gn:azo0099,EnsemblGenomes-Tr:CAL92717,GOA:A1K1L2,InterPro:IPR000181,InterPro:IPR023635,UniProtKB/TrEMBL:A1K1L2,NCBI_GP:CAL92717.1;Name=CAL92717.1;Note=Probable peptide deformylase (EC 3.5.1.88). Homology to def of E. coli of 54%25 (sprot|DEF_ECOLI(SRS)). Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions Interpro: Formylmethionine deformylase (IPR000181) Pfam: Polypeptide deformylase Tigrfam: pept_deformyl: polypeptide deformylase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=def1;product=probable peptide deformylase;protein_id=CAL92717.1;transl_table=11
AM406670.1	EMBL	gene	119079	120044	.	+	.	ID=gene99;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=azo0100
AM406670.1	EMBL	CDS	119079	120044	.	+	0	ID=cds99;Parent=gene99;Dbxref=EnsemblGenomes-Gn:azo0100,EnsemblGenomes-Tr:CAL92718,GOA:A1K1L3,InterPro:IPR001555,InterPro:IPR002376,InterPro:IPR005793,InterPro:IPR005794,InterPro:IPR011034,InterPro:IPR015518,UniProtKB/TrEMBL:A1K1L3,NCBI_GP:CAL92718.1;Name=CAL92718.1;Note=Methionyl-tRNA formyltransferase (EC 2.1.2.9). Modify the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by: (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP (By similarity). InterPro: Methionyl-tRNA formyltransferase fmt: methionyl-tRNA formyltransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=fmt;product=Fmt protein;protein_id=CAL92718.1;transl_table=11
AM406670.1	EMBL	gene	120104	120946	.	+	.	ID=gene100;Name=htpX;gbkey=Gene;gene=htpX;gene_biotype=protein_coding;locus_tag=azo0101
AM406670.1	EMBL	CDS	120104	120946	.	+	0	ID=cds100;Parent=gene100;Dbxref=EnsemblGenomes-Gn:azo0101,EnsemblGenomes-Tr:CAL92719,GOA:A1K1L4,InterPro:IPR001915,InterPro:IPR022919,UniProtKB/TrEMBL:A1K1L4,NCBI_GP:CAL92719.1;Name=CAL92719.1;Note=Putative protease HtpX Homolog to htpX of E. coli of 30%25 (AAA62779) InterPro: Peptidase family M48 (IPR001915) Pfam: Peptidase family M48 signal peptide TMHs3%3B~Family membership;gbkey=CDS;gene=htpX;product=putative protease HtpX;protein_id=CAL92719.1;transl_table=11
AM406670.1	EMBL	gene	120960	121487	.	+	.	ID=gene101;Name=helX;gbkey=Gene;gene=helX;gene_biotype=protein_coding;locus_tag=azo0102
AM406670.1	EMBL	CDS	120960	121487	.	+	0	ID=cds101;Parent=gene101;Dbxref=EnsemblGenomes-Gn:azo0102,EnsemblGenomes-Tr:CAL92720,GOA:A1K1L5,InterPro:IPR012336,InterPro:IPR013740,InterPro:IPR017937,UniProtKB/TrEMBL:A1K1L5,NCBI_GP:CAL92720.1;Name=CAL92720.1;Note=Putative thiol:disulfide oxidoreductase. Homology to helX of R. casulata of 35%25 Periplasmic protein thiol:disulphide oxidoreductase is involved in the biogenesis of c-type cytochromes as well as in disulphide bond formation in some periplasmic proteins. Tigrfam: dsbE: periplasmic protein thiol:disulfide signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=helX;product=putative thiol:disulphide oxidoreductase;protein_id=CAL92720.1;transl_table=11
AM406670.1	EMBL	gene	121484	122596	.	+	.	ID=gene102;Name=azo0103;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0103
AM406670.1	EMBL	CDS	121484	122596	.	+	0	ID=cds102;Parent=gene102;Dbxref=EnsemblGenomes-Gn:azo0103,EnsemblGenomes-Tr:CAL92721,InterPro:IPR002931,InterPro:IPR019546,UniProtKB/TrEMBL:A1K1L6,NCBI_GP:CAL92721.1;Name=CAL92721.1;Note=Conserved hypothetical secreted protein. Homology to SMa0025 of S. meliloti of 46%25 pir|D95263(SRS). Pfam: Transglutaminase_like Superfamily signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92721.1;transl_table=11
AM406670.1	EMBL	gene	122689	123570	.	+	.	ID=gene103;Name=azo0104;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0104
AM406670.1	EMBL	CDS	122689	123570	.	+	0	ID=cds103;Parent=gene103;Dbxref=EnsemblGenomes-Gn:azo0104,EnsemblGenomes-Tr:CAL92722,InterPro:IPR004010,InterPro:IPR006311,UniProtKB/TrEMBL:A1K1L7,NCBI_GP:CAL92722.1;Name=CAL92722.1;Note=Conserved hypothetical secreted protein. Homology to ebA582 of Azoacrus sp EbN1 (trembl:Q5P8D6). No domains predicted. SignalP reporting signal peptid. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92722.1;transl_table=11
AM406670.1	EMBL	gene	123626	124126	.	+	.	ID=gene104;Name=tpx;gbkey=Gene;gene=tpx;gene_biotype=protein_coding;locus_tag=azo0105
AM406670.1	EMBL	CDS	123626	124126	.	+	0	ID=cds104;Parent=gene104;Dbxref=EnsemblGenomes-Gn:azo0105,EnsemblGenomes-Tr:CAL92723,GOA:A1K1L8,InterPro:IPR002065,InterPro:IPR012336,InterPro:IPR013740,InterPro:IPR018219,UniProtKB/TrEMBL:A1K1L8,NCBI_GP:CAL92723.1;Name=CAL92723.1;Note=Probable thiol peroxidase. Homology to E. coli of 62%25 (sprot:TPX_ECOLI) Has antioxidant activity. Could remove peroxides or H(2)O(2) (By similarity). Pfam: AhpC/TSA family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=tpx;product=probable thiol peroxidase;protein_id=CAL92723.1;transl_table=11
AM406670.1	EMBL	gene	124218	125105	.	+	.	ID=gene105;Name=azo0106;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0106
AM406670.1	EMBL	CDS	124218	125105	.	+	0	ID=cds105;Parent=gene105;Dbxref=EnsemblGenomes-Gn:azo0106,EnsemblGenomes-Tr:CAL92724,GOA:A1K1L9,InterPro:IPR000620,UniProtKB/TrEMBL:A1K1L9,NCBI_GP:CAL92724.1;Name=CAL92724.1;Note=Conserved hypothetical membrane protein. Homology to an orf of R. palustris (tremblnew|CAE28417). Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Tranporter InterPro: Integral membrane protein DUF6 Pfam: Integral membrane protein DUF6 no signal peptide probable 10 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92724.1;transl_table=11
AM406670.1	EMBL	gene	125118	125834	.	-	.	ID=gene106;Name=azo0107;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0107
AM406670.1	EMBL	CDS	125118	125834	.	-	0	ID=cds106;Parent=gene106;Dbxref=EnsemblGenomes-Gn:azo0107,EnsemblGenomes-Tr:CAL92725,InterPro:IPR003744,UniProtKB/TrEMBL:A1K1M0,NCBI_GP:CAL92725.1;Name=CAL92725.1;Note=conserved hypothetical membrane proteins%2C 42%25 identity (59%25 similarity) to TrEMBL%3BQ73PF0 Has PF02592%3BUncharacterized ACR%2C YhhQ family COG1738%3BIPR003744:This is a family of uncharacterized proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins. no signal peptide. 4 TMH.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92725.1;transl_table=11
AM406670.1	EMBL	gene	126088	127293	.	+	.	ID=gene107;Name=azo0108;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0108
AM406670.1	EMBL	CDS	126088	127293	.	+	0	ID=cds107;Parent=gene107;Dbxref=EnsemblGenomes-Gn:azo0108,EnsemblGenomes-Tr:CAL92726,GOA:A1K1M1,InterPro:IPR006103,InterPro:IPR013781,InterPro:IPR017853,UniProtKB/TrEMBL:A1K1M1,NCBI_GP:CAL92726.1;Name=CAL92726.1;Note=Conserved hypothetical secreted protein. Homology to XCC0740 of Xanthomonas campestris of 33%25 (trembl|Q8PCI6(SRS) Pfam: Glycosyl hydrolases family 2%2CTIM barrel domain This family contains beta-galactosidase%2Cbeta-mannosidase and beta-glucuronidase activities. No TMHs Signal peptide: present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92726.1;transl_table=11
AM406670.1	EMBL	gene	127357	127812	.	+	.	ID=gene108;Name=yihZ;gbkey=Gene;gene=yihZ;gene_biotype=protein_coding;locus_tag=azo0109
AM406670.1	EMBL	CDS	127357	127812	.	+	0	ID=cds108;Parent=gene108;Dbxref=EnsemblGenomes-Gn:azo0109,EnsemblGenomes-Tr:CAL92727,GOA:A1K1M2,InterPro:IPR003732,InterPro:IPR023509,NCBI_GP:CAL92727.1;Name=CAL92727.1;Note=D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-). Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine.%3B~High confidence in function and specificity;gbkey=CDS;gene=yihZ;product=D-tyrosyl-tRNA(Tyr) deacylase;protein_id=CAL92727.1;transl_table=11
AM406670.1	EMBL	gene	127825	128703	.	-	.	ID=gene109;Name=azo0110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0110
AM406670.1	EMBL	CDS	127825	128703	.	-	0	ID=cds109;Parent=gene109;Dbxref=EnsemblGenomes-Gn:azo0110,EnsemblGenomes-Tr:CAL92728,InterPro:IPR003829,InterPro:IPR008778,InterPro:IPR011051,InterPro:IPR012093,InterPro:IPR014710,UniProtKB/TrEMBL:A1K1M3,NCBI_GP:CAL92728.1;Name=CAL92728.1;Note=Pirin-like protein. TREMBL:Q8P799: 52%25 identity%2C65%25 similarity. InterPro: DUF209 his region is found the C-terminal half of the Pirin protein. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein%2C exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures. A tomato homologue of human Pirin has been found to be induced during programmed cell death. Human Pirin interacts with Bcl-3 and NFI and hence is probably involved in the regulation of DNA transcription and replication. It appears to be an Fe(II)-containing member of the Cupin superfamil InterPro:IPR007113%3B Cupin_sup. IPR008778%3B Pirin_C. IPR003829%3B Pirin_N. Pfam PF02678%3B Pirin%3B 1. PF05726%3B Pirin_C molyb_syn: molybdenum cofactor synthesis Absence of transmembrane helices (TMHMM predicted)%3B~Function unclear;gbkey=CDS;product=probable pirin-related protein;protein_id=CAL92728.1;transl_table=11
AM406670.1	EMBL	gene	128838	129824	.	+	.	ID=gene110;Name=adhA;gbkey=Gene;gene=adhA;gene_biotype=protein_coding;locus_tag=azo0111
AM406670.1	EMBL	CDS	128838	129824	.	+	0	ID=cds110;Parent=gene110;Dbxref=EnsemblGenomes-Gn:azo0111,EnsemblGenomes-Tr:CAL92729,GOA:A1K1M4,InterPro:IPR002085,InterPro:IPR002328,InterPro:IPR011032,InterPro:IPR013154,InterPro:IPR014187,InterPro:IPR016040,UniProtKB/TrEMBL:A1K1M4,NCBI_GP:CAL92729.1;Name=CAL92729.1;Note=Putative Alcohol dehydrogenase. Homology to adh-HT of B. stearothermophilus (sprot|ADH3_BACST) THERMOSTABLE AND THERMOPHILIC NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE. BEARS MAINLY AN ETHANOL-DEHYDROGENASE ACTIVITY. CATALYTIC ACTIVITY:An alcohol + NAD(+) %3D an aldehyde or ketone + NADH. COFACTOR: Binds 2 zinc ions per subunit (By similarity). Pfam: Zinc-binding dehydrogenase Tirgfam: tdh: L-threonine 3-dehydrogenase no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=adhA;product=putative alcohol dehydrogenase;protein_id=CAL92729.1;transl_table=11
AM406670.1	EMBL	gene	129841	130737	.	-	.	ID=gene111;Name=gstR1;gbkey=Gene;gene=gstR1;gene_biotype=protein_coding;locus_tag=azo0112
AM406670.1	EMBL	CDS	129841	130737	.	-	0	ID=cds111;Parent=gene111;Dbxref=EnsemblGenomes-Gn:azo0112,EnsemblGenomes-Tr:CAL92730,GOA:A1K1M5,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K1M5,NCBI_GP:CAL92730.1;Name=CAL92730.1;Note=Putative transcriptional regulator. Homology to gstR of R. leguminosarum of 37%25 (tremble:Q52827). Has PF00126%2C HTH_1%2CBacterial regulatory helix-turn-helix protein%2C lysR family.IPR000847%2C HTH_LysR%3B Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse%2C but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family%2C the lysR family%2C groups together a range of proteins%2C including ampR%2C catM%2C catR%2C cynR%2C cysB%2C gltC%2CiciA%2C ilvY%2C irgB%2C lysR%2C metR%2C mkaC%2C mleR%2C nahR%2C nhaR%2CnodD%2C nolR%2C oxyR%2C pssR%2C rbcR%2C syrM%2C tcbR%2C tfdS and trpI. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini. Has PF03466%2C LysR substrate binding domain%3BIPR005119%2C LysR_subst%3B The structure of this domain is known and is%3B~High confidence in function and specificity;gbkey=CDS;gene=gstR1;product=putative transcriptional regulator;protein_id=CAL92730.1;transl_table=11
AM406670.1	EMBL	gene	130842	131489	.	+	.	ID=gene112;Name=gstA;gbkey=Gene;gene=gstA;gene_biotype=protein_coding;locus_tag=azo0113
AM406670.1	EMBL	CDS	130842	131489	.	+	0	ID=cds112;Parent=gene112;Dbxref=EnsemblGenomes-Gn:azo0113,EnsemblGenomes-Tr:CAL92731,GOA:A1K1M6,InterPro:IPR004045,InterPro:IPR004046,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:A1K1M6,NCBI_GP:CAL92731.1;Name=CAL92731.1;Note=Probabe glutathione transferase. Homology to gstA of R. leguminosarum of 58%25 (sprot:GSTA_RHILE) Conjugation of reduced glutathione to a variety of targets. Pfam: PF02798%2C GST_N%2C Glutathione S-transferase%2C N-terminal domain%3B PF00043%2C GST_C%2C Glutathione S-transferase%2C C-terminal domain Interpro: IPR004045%2C GST_Nterm%3B IPR004046%2CGST_Cterm%3B no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=gstA;product=probable glutathione transferase;protein_id=CAL92731.1;transl_table=11
AM406670.1	EMBL	gene	131492	132490	.	+	.	ID=gene113;Name=azo0114;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0114
AM406670.1	EMBL	CDS	131492	132490	.	+	0	ID=cds113;Parent=gene113;Dbxref=EnsemblGenomes-Gn:azo0114,EnsemblGenomes-Tr:CAL92732,GOA:A1K1M7,InterPro:IPR011576,InterPro:IPR012349,UniProtKB/TrEMBL:A1K1M7,NCBI_GP:CAL92732.1;Name=CAL92732.1;Note=Conserved hypothetical protein. Homology to bp2124 of B. pertussis of 48%25 (trembl|Q7VWS5). Pfam: Pyridoxamine 5-phosphate oxidase no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92732.1;transl_table=11
AM406670.1	EMBL	gene	132910	133359	.	-	.	ID=gene114;Name=azo0115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0115
AM406670.1	EMBL	CDS	132910	133359	.	-	0	ID=cds114;Parent=gene114;Dbxref=EnsemblGenomes-Gn:azo0115,EnsemblGenomes-Tr:CAL92733,InterPro:IPR002539,InterPro:IPR029069,UniProtKB/TrEMBL:A1K1M8,NCBI_GP:CAL92733.1;Name=CAL92733.1;Note=MaoC protein (Phenylacetic acid degradation protein paaZ). Entry name :- TREMBL:Q8XXS0 Prim. accession # Q8XXS0 InterPro:-IPR002539%3B MaoC_dehydratas. Pfam:-PF01575%3B MaoC_dehydratas%3B 1. Identities %3D 77/145 (53%25) Number of predicted TMHs: 0;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92733.1;transl_table=11
AM406670.1	EMBL	gene	133377	134873	.	-	.	ID=gene115;Name=amn;gbkey=Gene;gene=amn;gene_biotype=protein_coding;locus_tag=azo0116
AM406670.1	EMBL	CDS	133377	134873	.	-	0	ID=cds115;Parent=gene115;Dbxref=EnsemblGenomes-Gn:azo0116,EnsemblGenomes-Tr:CAL92734,GOA:A1K1M9,InterPro:IPR000845,InterPro:IPR011271,InterPro:IPR018017,InterPro:IPR018953,UniProtKB/TrEMBL:A1K1M9,NCBI_GP:CAL92734.1;Name=CAL92734.1;Note=AMP nucleosidase InterPro: Purine and other phosphorylases family 1%3B~High confidence in function and specificity;gbkey=CDS;gene=amn;product=AMP nucleosidase;protein_id=CAL92734.1;transl_table=11
AM406670.1	EMBL	gene	135086	135853	.	+	.	ID=gene116;Name=braF;gbkey=Gene;gene=braF;gene_biotype=protein_coding;locus_tag=azo0117
AM406670.1	EMBL	CDS	135086	135853	.	+	0	ID=cds116;Parent=gene116;Dbxref=EnsemblGenomes-Gn:azo0117,EnsemblGenomes-Tr:CAL92735,GOA:A1K1N0,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1K1N0,NCBI_GP:CAL92735.1;Name=CAL92735.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XU49 (72%25) and to sprot|BRAF_PSEAE (40%25). Pfam: ABC transporter Smart: AAA ATPases%3B~Specificity unclear;gbkey=CDS;gene=braF;product=ABC transporter ATP-binding protein;protein_id=CAL92735.1;transl_table=11
AM406670.1	EMBL	gene	135870	136592	.	+	.	ID=gene117;Name=azo0118;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0118
AM406670.1	EMBL	CDS	135870	136592	.	+	0	ID=cds117;Parent=gene117;Dbxref=EnsemblGenomes-Gn:azo0118,EnsemblGenomes-Tr:CAL92736,GOA:A1K1N1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K1N1,NCBI_GP:CAL92736.1;Name=CAL92736.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q7W5F6 (63%25) and to trembl|Q8U8G7 (59%25). Pfam (PF00005): ABC transporter Smart (SM00382): ATPase superfamily%3B~Specificity unclear;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL92736.1;transl_table=11
AM406670.1	EMBL	gene	136627	137841	.	+	.	ID=gene118;Name=azo0119;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0119
AM406670.1	EMBL	CDS	136627	137841	.	+	0	ID=cds118;Parent=gene118;Dbxref=EnsemblGenomes-Gn:azo0119,EnsemblGenomes-Tr:CAL92737,GOA:A1K1N2,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1K1N2,NCBI_GP:CAL92737.1;Name=CAL92737.1;Note=ABC transporter substrate binding proteins count to the family of extracellular ligand binding proteins. It is a component of the high affinity amino acid transport system. Similar to trembl|Q8XU51 (58%25) and to tremblnew|CAE27314 (45%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;product=probable ABC transporter substrate binding protein;protein_id=CAL92737.1;transl_table=11
AM406670.1	EMBL	gene	137898	138782	.	+	.	ID=gene119;Name=azo0120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0120
AM406670.1	EMBL	CDS	137898	138782	.	+	0	ID=cds119;Parent=gene119;Dbxref=EnsemblGenomes-Gn:azo0120,EnsemblGenomes-Tr:CAL92738,GOA:A1K1N3,InterPro:IPR001851,UniProtKB/TrEMBL:A1K1N3,NCBI_GP:CAL92738.1;Name=CAL92738.1;Note=Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q92LQ5 (71%25) and to trembl|Q8XU52 (69%25). Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) TMHMM reporting eight Tmhelix.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease protein;protein_id=CAL92738.1;transl_table=11
AM406670.1	EMBL	gene	138807	139763	.	+	.	ID=gene120;Name=livM1;gbkey=Gene;gene=livM1;gene_biotype=protein_coding;locus_tag=azo0121
AM406670.1	EMBL	CDS	138807	139763	.	+	0	ID=cds120;Parent=gene120;Dbxref=EnsemblGenomes-Gn:azo0121,EnsemblGenomes-Tr:CAL92739,GOA:A1K1N4,InterPro:IPR001851,UniProtKB/TrEMBL:A1K1N4,NCBI_GP:CAL92739.1;Name=CAL92739.1;Note=Putative branched-chain amino acid transport permease. Homology to livM of S. typhimurium of 25%25. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. Pfam: branch-chain amino acid transport system probable signal peptide probable 6 TMHs%3B~Specificity unclear;gbkey=CDS;gene=livM1;product=putative branched-chain amino acid transport permease;protein_id=CAL92739.1;transl_table=11
AM406670.1	EMBL	gene	139919	141091	.	-	.	ID=gene121;Name=azo0122;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0122
AM406670.1	EMBL	CDS	139919	141091	.	-	0	ID=cds121;Parent=gene121;Dbxref=EnsemblGenomes-Gn:azo0122,EnsemblGenomes-Tr:CAL92740,GOA:A1K1N5,InterPro:IPR004383,InterPro:IPR007197,InterPro:IPR013785,NCBI_GP:CAL92740.1;Name=CAL92740.1;Note=Region start changed from 140962 to 141091 (129 bases);gbkey=CDS;product=probable Fe-S cluster redox enzyme;protein_id=CAL92740.1;transl_table=11
AM406670.1	EMBL	gene	141038	141463	.	+	.	ID=gene122;Name=azo0123;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0123
AM406670.1	EMBL	CDS	141038	141463	.	+	0	ID=cds122;Parent=gene122;Dbxref=EnsemblGenomes-Gn:azo0123,EnsemblGenomes-Tr:CAL92741,InterPro:IPR021218,UniProtKB/TrEMBL:A1K1N6,NCBI_GP:CAL92741.1;Name=CAL92741.1;gbkey=CDS;product=putative threonine efflux protein;protein_id=CAL92741.1;transl_table=11
AM406670.1	EMBL	gene	141533	141742	.	+	.	ID=gene123;Name=azo0124;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0124
AM406670.1	EMBL	CDS	141533	141742	.	+	0	ID=cds123;Parent=gene123;Dbxref=EnsemblGenomes-Gn:azo0124,EnsemblGenomes-Tr:CAL92742,UniProtKB/TrEMBL:A1K1N7,NCBI_GP:CAL92742.1;Name=CAL92742.1;Note=Hypothetical secreted protein. no homology to the data bank. no domains predicted signal peptide no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL92742.1;transl_table=11
AM406670.1	EMBL	gene	141717	142061	.	+	.	ID=gene124;Name=azo0125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0125
AM406670.1	EMBL	CDS	141717	142061	.	+	0	ID=cds124;Parent=gene124;Dbxref=EnsemblGenomes-Gn:azo0125,EnsemblGenomes-Tr:CAL92743,InterPro:IPR007077,UniProtKB/TrEMBL:A1K1N8,NCBI_GP:CAL92743.1;Name=CAL92743.1;Note=Conserved hypothetical secreted protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92743.1;transl_table=11
AM406670.1	EMBL	gene	142061	142369	.	+	.	ID=gene125;Name=azo0126;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0126
AM406670.1	EMBL	CDS	142061	142369	.	+	0	ID=cds125;Parent=gene125;Dbxref=EnsemblGenomes-Gn:azo0126,EnsemblGenomes-Tr:CAL92744,InterPro:IPR010753,InterPro:IPR011008,UniProtKB/TrEMBL:A1K1N9,NCBI_GP:CAL92744.1;Name=CAL92744.1;Note=Conserved hypothetical protein with 74%25 similarity(57%25 identity)to Conserved hypothetical protein [Sinorhizobium meliloti]. No Signal peptide reported to be present. No TMH reported to be present. Has PF07045%2CProtein of unknown function (DUF1330)This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown. TIGRFAM:acolac_sm: acetolactate synthase%2Csmall s%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92744.1;transl_table=11
AM406670.1	EMBL	gene	142468	142659	.	+	.	ID=gene126;Name=azo0127;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0127
AM406670.1	EMBL	CDS	142468	142659	.	+	0	ID=cds126;Parent=gene126;Dbxref=EnsemblGenomes-Gn:azo0127,EnsemblGenomes-Tr:CAL92745,UniProtKB/TrEMBL:A1K1P0,NCBI_GP:CAL92745.1;Name=CAL92745.1;Note=Hypothetical protein%2C 40%25 identity to TrEMBL%3BQ73S36 Weak Homology with most protein hits in the database. No Domains/Features/Motifs predicted present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL92745.1;transl_table=11
AM406670.1	EMBL	gene	142690	143106	.	-	.	ID=gene127;Name=azo0128;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0128
AM406670.1	EMBL	CDS	142690	143106	.	-	0	ID=cds127;Parent=gene127;Dbxref=EnsemblGenomes-Gn:azo0128,EnsemblGenomes-Tr:CAL92746,InterPro:IPR012427,UniProtKB/TrEMBL:A1K1P1,NCBI_GP:CAL92746.1;Name=CAL92746.1;Note=Conserved hypothetical membrane protein%2C 50%25 identity (62%25 similarity) to TrEMBL%3BQ7NQ67. No domains predicted TMHMM2 reporting 1 TMH's present. No signal peptide reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92746.1;transl_table=11
AM406670.1	EMBL	gene	143294	144907	.	+	.	ID=gene128;Name=tap;gbkey=Gene;gene=tap;gene_biotype=protein_coding;locus_tag=azo0129
AM406670.1	EMBL	CDS	143294	144907	.	+	0	ID=cds128;Parent=gene128;Dbxref=EnsemblGenomes-Gn:azo0129,EnsemblGenomes-Tr:CAL92747,GOA:A1K1P2,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR024478,UniProtKB/TrEMBL:A1K1P2,NCBI_GP:CAL92747.1;Name=CAL92747.1;Note=The Tap (taxis toward peptides) receptor and the periplasmic dipeptide-binding protein (DBP) of Escherichia coli together mediate chemotactic responses to dipeptides. Similar trembl|Q7P0E0 (32%25) and to SWISSPROT:MCPC_SALTY (23%25). Pfam(PF00015): Bacterial chemotaxis sensory transducer Pfam (PF00672):HAMP domain TMHMM reporting two TMH. SignalP reporting Signalpeptid.%3B~Specificity unclear;gbkey=CDS;gene=tap;product=putative dipeptide chemoreceptor;protein_id=CAL92747.1;transl_table=11
AM406670.1	EMBL	gene	145152	146765	.	+	.	ID=gene129;Name=nahY;gbkey=Gene;gene=nahY;gene_biotype=protein_coding;locus_tag=azo0130
AM406670.1	EMBL	CDS	145152	146765	.	+	0	ID=cds129;Parent=gene129;Dbxref=EnsemblGenomes-Gn:azo0130,EnsemblGenomes-Tr:CAL92748,GOA:A1K1P3,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR024478,UniProtKB/TrEMBL:A1K1P3,NCBI_GP:CAL92748.1;Name=CAL92748.1;Note=The ability of bacteria to recognize and swim toward aromatic hydrocarbons is possibly an important prelude to their degradation. In Pseudomonas putida G7%2CNahY is the receptor required for the chemotaxis to naphthalene. Similar to trembl|Q7NU44 (38%25) and to trembl|Q7NY58 (33%25). Smart: HAMP domain Pfam (PF00015): Methyl-accepting chemotaxis protein (MCP) signalling domain SignalP reporting Signal Peptide.%3B~Specificity unclear;gbkey=CDS;gene=nahY;product=putative aromatic hydrocarbon chemotaxis transducer;protein_id=CAL92748.1;transl_table=11
AM406670.1	EMBL	gene	146889	147092	.	+	.	ID=gene130;Name=dmpI;gbkey=Gene;gene=dmpI;gene_biotype=protein_coding;locus_tag=azo0131
AM406670.1	EMBL	CDS	146889	147092	.	+	0	ID=cds130;Parent=gene130;Dbxref=EnsemblGenomes-Gn:azo0131,EnsemblGenomes-Tr:CAL92749,GOA:A1K1P4,InterPro:IPR004370,InterPro:IPR014347,InterPro:IPR018191,UniProtKB/TrEMBL:A1K1P4,NCBI_GP:CAL92749.1;Name=CAL92749.1;Note=Probable tautomerase lin2709 (EC 5.3.2.2). TREMBL:Q7UE84: 67%25 identity%2C 86%25 similarity InterPro:IPR004370%3B Taut. ProDom: PD404143 InterPro: 4-oxalocrotonate tautomerase taut: 4-oxalocrotonate tautomerase No signal peptide no TMH's%3B~High confidence in function and specificity;gbkey=CDS;gene=dmpI;product=probable 4-oxalocrotonate tautomerase;protein_id=CAL92749.1;transl_table=11
AM406670.1	EMBL	gene	147273	148154	.	+	.	ID=gene131;Name=azo0132;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0132
AM406670.1	EMBL	CDS	147273	148154	.	+	0	ID=cds131;Parent=gene131;Dbxref=EnsemblGenomes-Gn:azo0132,EnsemblGenomes-Tr:CAL92750,GOA:A1K1P5,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K1P5,NCBI_GP:CAL92750.1;Name=CAL92750.1;Note=Transcriptional regulator%2C LysR family%2C%3B~Specificity unclear;gbkey=CDS;product=transcriptional regulator%2C LysR family;protein_id=CAL92750.1;transl_table=11
AM406670.1	EMBL	gene	148401	149321	.	+	.	ID=gene132;Name=ilvE1;gbkey=Gene;gene=ilvE1;gene_biotype=protein_coding;locus_tag=azo0133
AM406670.1	EMBL	CDS	148401	149321	.	+	0	ID=cds132;Parent=gene132;Dbxref=EnsemblGenomes-Gn:azo0133,EnsemblGenomes-Tr:CAL92751,GOA:A1K1P6,InterPro:IPR001544,InterPro:IPR005785,UniProtKB/TrEMBL:A1K1P6,NCBI_GP:CAL92751.1;Name=CAL92751.1;Note=Branched-chain amino acid aminotransferase (EC 2.6.1.42) (BCAT). Acts on leucine isoleucine and valine (By similarity). InterPro: Aminotransferases class-IV%3B~High confidence in function and specificity;gbkey=CDS;gene=ilvE1;product=branched-chain-amino-acid transaminase;protein_id=CAL92751.1;transl_table=11
AM406670.1	EMBL	gene	149318	150751	.	-	.	ID=gene133;Name=ydaM;gbkey=Gene;gene=ydaM;gene_biotype=protein_coding;locus_tag=azo0134
AM406670.1	EMBL	CDS	149318	150751	.	-	0	ID=cds133;Parent=gene133;Dbxref=EnsemblGenomes-Gn:azo0134,EnsemblGenomes-Tr:CAL92752,GOA:A1K1P7,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR029787,UniProtKB/TrEMBL:A1K1P7,NCBI_GP:CAL92752.1;Name=CAL92752.1;Note=Hypothetical response regulator%2C TREMBL: trembl|Q7MSI2 (24%25 Wolinella succinogenes%2C hypothetical protein ws0414) InterPro: IPR001610 PAC. IPR000014 PAS. IPR001789 Response_reg. IPR000160 GGDEF. Pfam: PF00990 GGDEF domain. PF00072 Response_reg. PF00785 PAC. PF00989 PAS. TIGRFAM: TIGR00254 putative diguanylate cyclase (GGDEF) domain. TIGR00229 PAS domain S-box.%3B~Conserved hypothetical protein;gbkey=CDS;gene=ydaM;product=putative response regulator;protein_id=CAL92752.1;transl_table=11
AM406670.1	EMBL	gene	150748	151149	.	-	.	ID=gene134;Name=azo0135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0135
AM406670.1	EMBL	CDS	150748	151149	.	-	0	ID=cds134;Parent=gene134;Dbxref=EnsemblGenomes-Gn:azo0135,EnsemblGenomes-Tr:CAL92753,GOA:A1K1P8,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1K1P8,NCBI_GP:CAL92753.1;Name=CAL92753.1;Note=Putative response regulator;gbkey=CDS;product=putative response regulator;protein_id=CAL92753.1;transl_table=11
AM406670.1	EMBL	gene	151184	153406	.	-	.	ID=gene135;Name=azo0136;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0136
AM406670.1	EMBL	CDS	151184	153406	.	-	0	ID=cds135;Parent=gene135;Dbxref=EnsemblGenomes-Gn:azo0136,EnsemblGenomes-Tr:CAL92754,GOA:A1K1P9,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1K1P9,NCBI_GP:CAL92754.1;Name=CAL92754.1;Note=Putative hybrid sensor and regulator protein;gbkey=CDS;product=putative hybrid sensor and regulator protein;protein_id=CAL92754.1;transl_table=11
AM406670.1	EMBL	gene	153403	154701	.	-	.	ID=gene136;Name=amiC1;gbkey=Gene;gene=amiC1;gene_biotype=protein_coding;locus_tag=azo0137
AM406670.1	EMBL	CDS	153403	154701	.	-	0	ID=cds136;Parent=gene136;Dbxref=EnsemblGenomes-Gn:azo0137,EnsemblGenomes-Tr:CAL92755,GOA:A1K1Q0,InterPro:IPR000709,InterPro:IPR017777,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1K1Q0,NCBI_GP:CAL92755.1;Name=CAL92755.1;Note=Aliphatic amidase expression-regulating protein%2CAmiC regulates the expression of the inducible aliphatic amidase activity in Pseudomonas aeruginosa. Similar to sprot|AMIC_PSEAE (31%25) and to trembl|P74390 (50%25).Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=amiC1;product=putative aliphatic amidase expression-regulating protein;protein_id=CAL92755.1;transl_table=11
AM406670.1	EMBL	gene	154860	155846	.	+	.	ID=gene137;Name=azo0138;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0138
AM406670.1	EMBL	CDS	154860	155846	.	+	0	ID=cds137;Parent=gene137;Dbxref=EnsemblGenomes-Gn:azo0138,EnsemblGenomes-Tr:CAL92756,GOA:A1K1Q1,InterPro:IPR001206,InterPro:IPR016064,UniProtKB/TrEMBL:A1K1Q1,NCBI_GP:CAL92756.1;Name=CAL92756.1;Note=Conserved hypothetical protein.Similarity to b.subtilis bmru and to synechocystis pcc 6803 sll0036. Identities %3D 29/85 (34%25) Entry name SWISSPROT:YEGS_ECOLI Prim. accession # P76407 InterPro IPR005218%3B Cons_hypoth147. IPR001206%3B DAGKc. Pfam PF00781%3B DAGKc%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.00 Number of predicted TMHs: 0;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92756.1;transl_table=11
AM406670.1	EMBL	gene	155860	156708	.	+	.	ID=gene138;Name=cpdA;gbkey=Gene;gene=cpdA;gene_biotype=protein_coding;locus_tag=azo0139
AM406670.1	EMBL	CDS	155860	156708	.	+	0	ID=cds138;Parent=gene138;Dbxref=EnsemblGenomes-Gn:azo0139,EnsemblGenomes-Tr:CAL92757,GOA:A1K1Q2,InterPro:IPR024654,InterPro:IPR029052,UniProtKB/TrEMBL:A1K1Q2,NCBI_GP:CAL92757.1;Name=CAL92757.1;Note=Serine/threonine (S/T) phosphatases catalyse the dephosphorylation of phosphoserine and phosphothreonine residues. In mammalian tissues four different types of PP have been identified and are known as PP1%2C PP2A%2C PP2B and PP2C. Except for PP2C%2C these enzymes are evolutionary related. The catalytic regions of the proteins are well conserved TREMBL:Q7VZQ9: 41%25 identity%2C 50%25 similarity InterPro:IPR004843%3B M-ppestrase. Pfam:PF00149%3B Metallophos InterPro: Serine/threonine specific protein phosphatase No transmembrane helices sbcd: exonuclease SbcD%3B~High confidence in function and specificity;gbkey=CDS;gene=cpdA;product=probable phosphodiesterase;protein_id=CAL92757.1;transl_table=11
AM406670.1	EMBL	gene	156692	157861	.	-	.	ID=gene139;Name=azo0140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0140
AM406670.1	EMBL	CDS	156692	157861	.	-	0	ID=cds139;Parent=gene139;Dbxref=EnsemblGenomes-Gn:azo0140,EnsemblGenomes-Tr:CAL92758,InterPro:IPR013702,InterPro:IPR019494,UniProtKB/TrEMBL:A1K1Q3,NCBI_GP:CAL92758.1;Name=CAL92758.1;Note=Conserved hypothetical protein. Homology to an orf of Ralstonia eutropha of 61%25 (ZP_00167955). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92758.1;transl_table=11
AM406670.1	EMBL	gene	158045	159949	.	+	.	ID=gene140;Name=gidA;gbkey=Gene;gene=gidA;gene_biotype=protein_coding;locus_tag=azo0141
AM406670.1	EMBL	CDS	158045	159949	.	+	0	ID=cds140;Parent=gene140;Dbxref=EnsemblGenomes-Gn:azo0141,EnsemblGenomes-Tr:CAL92759,GOA:A1K1Q4,InterPro:IPR002218,InterPro:IPR004416,InterPro:IPR020595,InterPro:IPR026904,NCBI_GP:CAL92759.1;Name=CAL92759.1;Note=Glucose inhibited division protein A.%3B~High confidence in function and specificity;gbkey=CDS;gene=gidA;product=glucose inhibited division protein A;protein_id=CAL92759.1;transl_table=11
AM406670.1	EMBL	gene	159946	160584	.	+	.	ID=gene141;Name=gidB;gbkey=Gene;gene=gidB;gene_biotype=protein_coding;locus_tag=azo0142
AM406670.1	EMBL	CDS	159946	160584	.	+	0	ID=cds141;Parent=gene141;Dbxref=EnsemblGenomes-Gn:azo0142,EnsemblGenomes-Tr:CAL92760,GOA:A1K1Q5,InterPro:IPR003682,InterPro:IPR029063,NCBI_GP:CAL92760.1;Name=CAL92760.1;Note=Probable methyltransferase GidB. Homology to gidB of E. coli of 47%25 (sprot|GIDB_ECOLI) Probable S-adenosyl-L-methionine dependent methyltransferase specific for a sterol and/or lipid substrate (By similarity). InterPro: Glucose inhibited division protein (IPR003682) Pfam: Glucose inhibited division protein Tigrfam: gidB: glucose-inhibited division protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=gidB;product=probable methyltransferase GidB;protein_id=CAL92760.1;transl_table=11
AM406670.1	EMBL	gene	160716	161486	.	+	.	ID=gene142;Name=parA1;gbkey=Gene;gene=parA1;gene_biotype=protein_coding;locus_tag=azo0143
AM406670.1	EMBL	CDS	160716	161486	.	+	0	ID=cds142;Parent=gene142;Dbxref=EnsemblGenomes-Gn:azo0143,EnsemblGenomes-Tr:CAL92761,InterPro:IPR002586,InterPro:IPR027417,UniProtKB/TrEMBL:A1K1Q6,NCBI_GP:CAL92761.1;Name=CAL92761.1;Note=putative chromosome partitioning protein%3B~High confidence in function and specificity;gbkey=CDS;gene=parA1;product=ParA family protein;protein_id=CAL92761.1;transl_table=11
AM406670.1	EMBL	gene	161496	161789	.	+	.	ID=gene143;Name=azo0144;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0144
AM406670.1	EMBL	CDS	161496	161789	.	+	0	ID=cds143;Parent=gene143;Dbxref=EnsemblGenomes-Gn:azo0144,EnsemblGenomes-Tr:CAL92762,GOA:A1K1Q7,InterPro:IPR002934,UniProtKB/TrEMBL:A1K1Q7,NCBI_GP:CAL92762.1;Name=CAL92762.1;Note=Hypothetical protein MJ0435. trembl:Q8DGT1:51%25 identity%2C 64%25 similarity InterPro: IPR002934%3B NTP_transf. Pfam: PF01909%3B NTP_transf_2 No signal peptide (Signal P predicted) No transmembrane helices (TMHMM predicted). hstdl_phs_rel: histidinol phosphatase-r%3B~Specificity unclear;gbkey=CDS;product=probable nucleotidyltransferase;protein_id=CAL92762.1;transl_table=11
AM406670.1	EMBL	gene	161786	162148	.	+	.	ID=gene144;Name=azo0145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0145
AM406670.1	EMBL	CDS	161786	162148	.	+	0	ID=cds144;Parent=gene144;Dbxref=EnsemblGenomes-Gn:azo0145,EnsemblGenomes-Tr:CAL92763,InterPro:IPR008201,UniProtKB/TrEMBL:A1K1Q8,NCBI_GP:CAL92763.1;Name=CAL92763.1;Note=Conserved hypothetical secreted protein. Homology to TLL2231 of Thermosynechococcus elongatus of 34%25 (tremble:Q8DGT2). Signal peptide present. No TMH reported present. Has (IPR008201)PF01934 Protein of unknown function DUF86%3BThe function of members of this family is unknown.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92763.1;transl_table=11
AM406670.1	EMBL	gene	162150	163013	.	+	.	ID=gene145;Name=parB;gbkey=Gene;gene=parB;gene_biotype=protein_coding;locus_tag=azo0146
AM406670.1	EMBL	CDS	162150	163013	.	+	0	ID=cds145;Parent=gene145;Dbxref=EnsemblGenomes-Gn:azo0146,EnsemblGenomes-Tr:CAL92764,GOA:A1K1Q9,InterPro:IPR003115,InterPro:IPR004437,UniProtKB/TrEMBL:A1K1Q9,NCBI_GP:CAL92764.1;Name=CAL92764.1;Note=Probable chromosome partitioning protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=parB;product=probable chromosome partitioning protein ParB;protein_id=CAL92764.1;transl_table=11
AM406670.1	EMBL	gene	163114	165879	.	-	.	ID=gene146;Name=azo0147;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0147
AM406670.1	EMBL	CDS	163114	165879	.	-	0	ID=cds146;Parent=gene146;Dbxref=EnsemblGenomes-Gn:azo0147,EnsemblGenomes-Tr:CAL92765,InterPro:IPR014600,InterPro:IPR019286,UniProtKB/TrEMBL:A1K1R0,NCBI_GP:CAL92765.1;Name=CAL92765.1;Note=Conserved hypothetical membrane protein. Homology to RS05051 of Ralstonia solanacearum of 45%25 (trembl|Q8Y1A4(SRS)). TMHMM2 reporting the presence of 26 TMH's. Signal P reporting Signal Peptide present. Coils2 program reporting presence of Coiled coil.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92765.1;transl_table=11
AM406670.1	EMBL	gene	165901	167784	.	-	.	ID=gene147;Name=azo0148;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0148
AM406670.1	EMBL	CDS	165901	167784	.	-	0	ID=cds147;Parent=gene147;Dbxref=EnsemblGenomes-Gn:azo0148,EnsemblGenomes-Tr:CAL92766,GOA:A1K1R1,InterPro:IPR002123,InterPro:IPR011701,InterPro:IPR016196,UniProtKB/TrEMBL:A1K1R1,NCBI_GP:CAL92766.1;Name=CAL92766.1;Note=Similar to the Aas bifunctional protein [includes: 2-acylglycerophosphoethanolamine acyltransferase (2-acyl-gpe acyltransferase)%3B acyl-acyl carrier protein synthetase (acyl-acp synthetase)].Plays a role in lysophospholipid acylation. 25%25 Acyltransferase.IPR000873%3B AMP-bind. Pfam:PF01553%3B Acyltransferase%3B 1.PF00501%3B AMP-binding%3B 1. TMhelix:10%3B~Function unclear;gbkey=CDS;product=putative acyltransferase family protein;protein_id=CAL92766.1;transl_table=11
AM406670.1	EMBL	gene	167781	169031	.	-	.	ID=gene148;Name=uxuA;gbkey=Gene;gene=uxuA;gene_biotype=protein_coding;locus_tag=azo0149
AM406670.1	EMBL	CDS	167781	169031	.	-	0	ID=cds148;Parent=gene148;Dbxref=EnsemblGenomes-Gn:azo0149,EnsemblGenomes-Tr:CAL92767,GOA:A1K1R2,InterPro:IPR006311,InterPro:IPR006992,UniProtKB/TrEMBL:A1K1R2,NCBI_GP:CAL92767.1;Name=CAL92767.1;Note=tremblnew|AAR36422:35%25 identity%2C 46%25 similarity EMBL:AE017218%3B AAR36422.1%3B TIGR:GSU3030%3B This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6. Interpro:IPR004628%3BMan_dehyd SignalP predicted signal peptide present. No. of transmembrane helices: 1 (TMHMM predicted) pyrC_dimer: dihydroorotase homodimeric%3B~Specificity unclear;gbkey=CDS;gene=uxuA;product=putative mannonate dehydratase;protein_id=CAL92767.1;transl_table=11
AM406670.1	EMBL	gene	169028	171166	.	-	.	ID=gene149;Name=aas;gbkey=Gene;gene=aas;gene_biotype=protein_coding;locus_tag=azo0150
AM406670.1	EMBL	CDS	169028	171166	.	-	0	ID=cds149;Parent=gene149;Dbxref=EnsemblGenomes-Gn:azo0150,EnsemblGenomes-Tr:CAL92768,GOA:A1K1R3,InterPro:IPR000873,InterPro:IPR002123,InterPro:IPR020845,UniProtKB/TrEMBL:A1K1R3,NCBI_GP:CAL92768.1;Name=CAL92768.1;Note=AAS bifunctional protein [Includes: 2-acylglycerophosphoethanolamine acyltransferase (2-acyl-GPE acyltransferase)%3B Acyl-acyl carrier protein synthetase (Acyl-ACP synthetase)]. PLAYS A ROLE IN LYSOPHOSPHOLIPID ACYLATION. TRANSFERS FATTY ACIDS TO THE 1-POSITION VIA AN ENZYME-BOUND ACYL-ACP INTERMEDIATE IN THE PRESENCE OF ATP AND MG(2+). ITS PHYSIOLOGICAL FUNCTION IS TO REGENERATE PTDETN FROM 2-ACYL-GPE FORMED BY TRANSACYLATION REACTIONS OR DEGRADATION BY PHOSPHOLIPASE A1%2C TREMBL:Q8FEA6 (52%25 identity)%3B SWISSPROT:P31119 (52%25 identity). Pfam (PF00501): AMP-binding enzyme. Pfam (PF01553): Acyltransferase. TIGRFAM (TIGR00530): 1-acyl-sn-glycerol-3-phosphate acyltransferases. SignalP reporting signal peptide.%3B~High confidence in function and specificity;gbkey=CDS;gene=aas;product=bifunctional Aas protein;protein_id=CAL92768.1;transl_table=11
AM406670.1	EMBL	gene	171247	171558	.	-	.	ID=gene150;Name=smtB;gbkey=Gene;gene=smtB;gene_biotype=protein_coding;locus_tag=azo0151
AM406670.1	EMBL	CDS	171247	171558	.	-	0	ID=cds150;Parent=gene150;Dbxref=EnsemblGenomes-Gn:azo0151,EnsemblGenomes-Tr:CAL92769,GOA:A1K1R4,InterPro:IPR001845,InterPro:IPR011991,UniProtKB/TrEMBL:A1K1R4,NCBI_GP:CAL92769.1;Name=CAL92769.1;Note=Putative transcriptional repressor%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=smtB;product=putative transcriptional repressor;protein_id=CAL92769.1;transl_table=11
AM406670.1	EMBL	gene	171735	172085	.	+	.	ID=gene151;Name=azo0152;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0152
AM406670.1	EMBL	CDS	171735	172085	.	+	0	ID=cds151;Parent=gene151;Dbxref=EnsemblGenomes-Gn:azo0152,EnsemblGenomes-Tr:CAL92770,InterPro:IPR005598,UniProtKB/TrEMBL:A1K1R5,NCBI_GP:CAL92770.1;Name=CAL92770.1;Note=Conserved hypothetical membrane protein. Homology to BB4612 of Bordetella bronchiseptica of 37%25 (trembl|Q7WEM2(SRS)). No domains predicted. signal peptide 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92770.1;transl_table=11
AM406670.1	EMBL	gene	172088	172936	.	+	.	ID=gene152;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;locus_tag=azo0153
AM406670.1	EMBL	CDS	172088	172936	.	+	0	ID=cds152;Parent=gene152;Dbxref=EnsemblGenomes-Gn:azo0153,EnsemblGenomes-Tr:CAL92771,GOA:A1K1R6,InterPro:IPR000568,InterPro:IPR023011,NCBI_GP:CAL92771.1;Name=CAL92771.1;Note=Probable ATP synthase A chain (Protein 6). Homology to atpB of E. coli of 47%25 (sprot|ATP6_ECOLI). Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2C CF(1) - the catalytic core - and CF(0) -the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2C gamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. Subunit A might be component of the proton channel%3B it may play a direct role in the translocation of protons across the membrane. InterPro: ATP synthase A subunit (IPR000568) Pfam: ATP synthase A chain no signal peptide probable 6 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=atpB;product=probable ATP synthase A chain;protein_id=CAL92771.1;transl_table=11
AM406670.1	EMBL	gene	172992	173237	.	+	.	ID=gene153;Name=atpE;gbkey=Gene;gene=atpE;gene_biotype=protein_coding;locus_tag=azo0154
AM406670.1	EMBL	CDS	172992	173237	.	+	0	ID=cds153;Parent=gene153;Dbxref=EnsemblGenomes-Gn:azo0154,EnsemblGenomes-Tr:CAL92772,GOA:A1K1R7,InterPro:IPR000454,InterPro:IPR002379,InterPro:IPR005953,InterPro:IPR020537,NCBI_GP:CAL92772.1;Name=CAL92772.1;Note=ATP synthase C chain. Homology to atpE of E. coli of 48%25 (sprot|ATPL_ECOLI). Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2C CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2C gamma%2Cdelta%2C epsilon. CF(0) has three main subunits: a%2C b and c. Pfam: ATP synthase subunit C probable signal peptide probable 1 TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=atpE;product=probable ATP synthase C chain;protein_id=CAL92772.1;transl_table=11
AM406670.1	EMBL	gene	173279	173752	.	+	.	ID=gene154;Name=atpF;gbkey=Gene;gene=atpF;gene_biotype=protein_coding;locus_tag=azo0155
AM406670.1	EMBL	CDS	173279	173752	.	+	0	ID=cds154;Parent=gene154;Dbxref=EnsemblGenomes-Gn:azo0155,EnsemblGenomes-Tr:CAL92773,GOA:A1K1R8,InterPro:IPR002146,InterPro:IPR005864,InterPro:IPR028987,NCBI_GP:CAL92773.1;Name=CAL92773.1;Note=Probable ATP synthase B chain. Homology to atpF of E. coli of 43%25 (sprot|ATPF_ECOLI) Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2CCF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2Cgamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. Pfam: ATP synthase B/B' CF(0) no signal peptide 1 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=atpF;product=probable ATP synthase B chain;protein_id=CAL92773.1;transl_table=11
AM406670.1	EMBL	gene	173756	174289	.	+	.	ID=gene155;Name=atpH;gbkey=Gene;gene=atpH;gene_biotype=protein_coding;locus_tag=azo0156
AM406670.1	EMBL	CDS	173756	174289	.	+	0	ID=cds155;Parent=gene155;Dbxref=EnsemblGenomes-Gn:azo0156,EnsemblGenomes-Tr:CAL92774,GOA:A1K1R9,InterPro:IPR000711,InterPro:IPR026015,NCBI_GP:CAL92774.1;Name=CAL92774.1;Note=putive ATP synthase delta chain. Homology to atpH of E. coli of 32%25 (sprot|ATPD_ECOLI). Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2CCF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2Cgamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. Subunit delta seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction. InterPro: ATP synthase delta (OSCP) subunit (IPR000711) Pfam: ATP synthase delta (OSCP) subunit no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=atpH;product=putative ATP synthase delta chain;protein_id=CAL92774.1;transl_table=11
AM406670.1	EMBL	gene	174303	175841	.	+	.	ID=gene156;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;locus_tag=azo0157
AM406670.1	EMBL	CDS	174303	175841	.	+	0	ID=cds156;Parent=gene156;Dbxref=EnsemblGenomes-Gn:azo0157,EnsemblGenomes-Tr:CAL92775,GOA:A1K1S0,InterPro:IPR000194,InterPro:IPR000793,InterPro:IPR004100,InterPro:IPR005294,InterPro:IPR020003,InterPro:IPR023366,InterPro:IPR027417,NCBI_GP:CAL92775.1;Name=CAL92775.1;Note=ATP synthase alpha chain. Homology to atpA of E. coli of 70%25 (sprot|ATPA_ECOLI). Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2CCF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2Cgamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Pfam: ATP syntahse alpha/beta family%2Cbeta barrel domain%3B ATP synthase alpha/beta chain%2C C terminal domain%3B ATP synthase alpha/beta chain%2C nucleotide binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=atpA;product=ATP synthase alpha chain;protein_id=CAL92775.1;transl_table=11
AM406670.1	EMBL	gene	175863	176732	.	+	.	ID=gene157;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;locus_tag=azo0158
AM406670.1	EMBL	CDS	175863	176732	.	+	0	ID=cds157;Parent=gene157;Dbxref=EnsemblGenomes-Gn:azo0158,EnsemblGenomes-Tr:CAL92776,GOA:A1K1S1,InterPro:IPR000131,InterPro:IPR023632,InterPro:IPR023633,NCBI_GP:CAL92776.1;Name=CAL92776.1;Note=Probable ATP synthase gamma chain. Homology to atpG of E. coli of 58%25 (sprot|ATPG_ECOLI) Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2CCF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2Cgamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. PRODUCES ATP FROM ADP IN THE PRESENCE OF A PROTON GRADIENT ACROSS THE MEMBRANE. THE GAMMA CHAIN IS BELIEVED TO BE IMPORTANT IN REGULATING ATPASE ACTIVITY AND THE FLOW OF PROTONS THROUGH THE CF(0) COMPLEX. InterPro: ATP synthase gamma subunit(IPR000131) Pfam: ATP synthase no TMHs no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=atpG;product=probable ATP synthase gamma chain;protein_id=CAL92776.1;transl_table=11
AM406670.1	EMBL	gene	176757	178157	.	+	.	ID=gene158;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;locus_tag=azo0159
AM406670.1	EMBL	CDS	176757	178157	.	+	0	ID=cds158;Parent=gene158;Dbxref=EnsemblGenomes-Gn:azo0159,EnsemblGenomes-Tr:CAL92777,GOA:A1K1S2,InterPro:IPR000194,InterPro:IPR000793,InterPro:IPR003593,InterPro:IPR004100,InterPro:IPR005722,InterPro:IPR020003,InterPro:IPR024034,InterPro:IPR027417,NCBI_GP:CAL92777.1;Name=CAL92777.1;Note=ATP synthase beta chain. Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2CCF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2C beta%2Cgamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is the catalytic subunit. InterPro: ATP synthase alpha and beta subunit central region(IPR000194)%3B ATP synthase alpha and beta subunit%2C N-terminal (IPR004100)%3B ATP synthase alpha and beta subunit%2C C-terminal (IPR000793)%3B AAA ATPase superfamily (IPR003593) Pfam: ATP synthase alph/beta family%2C beta-berrel domain%3B ATP synthase alph/beta family%2Cnucleotid binding domain%3B ATP synthase alpha/beta chain%2C C terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=atpD;product=ATP synthase beta chain;protein_id=CAL92777.1;transl_table=11
AM406670.1	EMBL	gene	178210	178635	.	+	.	ID=gene159;Name=atpC;gbkey=Gene;gene=atpC;gene_biotype=protein_coding;locus_tag=azo0160
AM406670.1	EMBL	CDS	178210	178635	.	+	0	ID=cds159;Parent=gene159;Dbxref=EnsemblGenomes-Gn:azo0160,EnsemblGenomes-Tr:CAL92778,GOA:A1K1S3,InterPro:IPR001469,InterPro:IPR020546,InterPro:IPR020547,NCBI_GP:CAL92778.1;Name=CAL92778.1;Note=Probable ATP synthase epsilon chain. Key component of the F-type ATPases (EC 3.6.3.14). The ATPase has 2 components%2C CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha%2Cbeta%2C gamma%2C delta%2C epsilon. CF(0) has three main subunits: a%2C b and c. InterPro: ATP synthase Delta/Epsilon chain (IPR001469) Pfam: ATP synthase%2C Dleta/Epsilon chain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=atpC;product=probable ATP synthase epsilon chain;protein_id=CAL92778.1;transl_table=11
AM406670.1	EMBL	gene	178705	179283	.	-	.	ID=gene160;Name=azo0161;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0161
AM406670.1	EMBL	CDS	178705	179283	.	-	0	ID=cds160;Parent=gene160;Dbxref=EnsemblGenomes-Gn:azo0161,EnsemblGenomes-Tr:CAL92779,InterPro:IPR003033,UniProtKB/TrEMBL:A1K1S4,NCBI_GP:CAL92779.1;Name=CAL92779.1;Note=Conserved hypothetical protein. Homology to rsc0460 of R. solanacearum of 39%25 (trembl|Q8Y276(SRS) Pfam: DUF1243 This family consists of a number of hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92779.1;transl_table=11
AM406670.1	EMBL	gene	179327	180064	.	-	.	ID=gene161;Name=ubiE1;gbkey=Gene;gene=ubiE1;gene_biotype=protein_coding;locus_tag=azo0162
AM406670.1	EMBL	CDS	179327	180064	.	-	0	ID=cds161;Parent=gene161;Dbxref=EnsemblGenomes-Gn:azo0162,EnsemblGenomes-Tr:CAL92780,GOA:A1K1S5,InterPro:IPR004033,InterPro:IPR023576,InterPro:IPR029063,UniProtKB/TrEMBL:A1K1S5,NCBI_GP:CAL92780.1;Name=CAL92780.1;Note=Ubiquinone/menaquinone biosynthesis methyltransferase ubiE (EC 2.1.1.-). Methyltransferase required for the conversion of dimethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-14-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-14-benzoquinol (DMQH2) (By similarity). InterPro: ubiE/COQ5 methyltransferase hemK_rel_arch: methylase putative%3B~High confidence in function and specificity;gbkey=CDS;gene=ubiE1;product=ubiquinone/menaquinone biosynthesis methyltransferase;protein_id=CAL92780.1;transl_table=11
AM406670.1	EMBL	gene	180072	180494	.	-	.	ID=gene162;Name=azo0163;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0163
AM406670.1	EMBL	CDS	180072	180494	.	-	0	ID=cds162;Parent=gene162;Dbxref=EnsemblGenomes-Gn:azo0163,EnsemblGenomes-Tr:CAL92781,InterPro:IPR010376,UniProtKB/TrEMBL:A1K1S6,NCBI_GP:CAL92781.1;Name=CAL92781.1;Note=Conserved hypothetical protein. Homology to rs04443 of R. solanacearum of 69%25 (trembl|Q8Y279). Pfam: PF06155%2CProtein of unknown function (DUF971) Interpro: IPR010376%3B This family consists of several short bacterial proteins and one sequence (Q8RZ62) from Oryza sativa. The function of this family is unknown. No Signal Peptide. No TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92781.1;transl_table=11
AM406670.1	EMBL	gene	180644	181354	.	+	.	ID=gene163;Name=phoB;gbkey=Gene;gene=phoB;gene_biotype=protein_coding;locus_tag=azo0164
AM406670.1	EMBL	CDS	180644	181354	.	+	0	ID=cds163;Parent=gene163;Dbxref=EnsemblGenomes-Gn:azo0164,EnsemblGenomes-Tr:CAL92782,GOA:A1K1S7,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011879,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K1S7,NCBI_GP:CAL92782.1;Name=CAL92782.1;Note=Phosphate regulon transcriptional regulatory protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=phoB;product=phosphate regulon transcriptional regulatory protein;protein_id=CAL92782.1;transl_table=11
AM406670.1	EMBL	gene	181446	182717	.	+	.	ID=gene164;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=protein_coding;locus_tag=azo0165
AM406670.1	EMBL	CDS	181446	182717	.	+	0	ID=cds164;Parent=gene164;Dbxref=EnsemblGenomes-Gn:azo0165,EnsemblGenomes-Tr:CAL92783,GOA:A1K1S8,InterPro:IPR000014,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR014310,InterPro:IPR021766,UniProtKB/TrEMBL:A1K1S8,NCBI_GP:CAL92783.1;Name=CAL92783.1;Note=Phosphate regulon sensor protein%2C 3 Signal P reporting signal peptide TMHMM reporting 1 transmembrane helices. MEMBER OF THE TWO-COMPONENT REGULATORY SYSTEM PHOR/PHOB INVOLVED IN THE PHOSPHATE REGULON GENES EXPRESSION. PHOR MAY FUNCTION AS A MEMBRANE-ASSOCIATED PROTEIN KINASE THAT PHOSPHORYLATES PHOB IN RESPONSE TO ENVIRONMENTAL SIGNALS.%3B~High confidence in function and specificity;gbkey=CDS;gene=phoR;product=phosphate regulon sensor protein;protein_id=CAL92783.1;transl_table=11
AM406670.1	EMBL	gene	182683	184287	.	-	.	ID=gene165;Name=azo0166;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0166
AM406670.1	EMBL	CDS	182683	184287	.	-	0	ID=cds165;Parent=gene165;Dbxref=EnsemblGenomes-Gn:azo0166,EnsemblGenomes-Tr:CAL92784,UniProtKB/TrEMBL:A1K1S9,NCBI_GP:CAL92784.1;Name=CAL92784.1;Note=Conserved hypothetical protein. Homology to ebA3023 of Azoarcus sp. EbN1 of 61%25 (trembl:Q5P4D4). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92784.1;transl_table=11
AM406670.1	EMBL	gene	184317	184733	.	-	.	ID=gene166;Name=azo0167;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0167
AM406670.1	EMBL	CDS	184317	184733	.	-	0	ID=cds166;Parent=gene166;Dbxref=EnsemblGenomes-Gn:azo0167,EnsemblGenomes-Tr:CAL92785,GOA:A1K1T0,InterPro:IPR001310,InterPro:IPR011146,InterPro:IPR026026,UniProtKB/TrEMBL:A1K1T0,NCBI_GP:CAL92785.1;Name=CAL92785.1;Note=55%25 HIT. Pfam:PF01230%3B HIT%3B 1. The Histidine Triad (HIT) motif%2C His-phi-His-phi-His-phi-phi (phi%2C a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92785.1;transl_table=11
AM406670.1	EMBL	gene	184801	185625	.	-	.	ID=gene167;Name=azo0168;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0168
AM406670.1	EMBL	CDS	184801	185625	.	-	0	ID=cds167;Parent=gene167;Dbxref=EnsemblGenomes-Gn:azo0168,EnsemblGenomes-Tr:CAL92786,GOA:A1K1T1,InterPro:IPR017932,InterPro:IPR026869,InterPro:IPR029055,UniProtKB/TrEMBL:A1K1T1,NCBI_GP:CAL92786.1;Name=CAL92786.1;Note=Conserved hypothetical glutamine amidotransferases class-II (Gn-AT)%2C YafJ-type. Homology to ebA3026 of Azoarcus sp. EbN1 of 75%25 (gnl|keqq|eba:ebA3026(KEGG)). Pfam: Glutamine amidotransferases class-II. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes%2C eukaryotes and archaea. YafJ has an Ntn hydrolase%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical glutamine amidotransferases class-II (Gn-AT)%2CYafJ-type;protein_id=CAL92786.1;transl_table=11
AM406670.1	EMBL	gene	185689	186207	.	-	.	ID=gene168;Name=azo0169;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0169
AM406670.1	EMBL	CDS	185689	186207	.	-	0	ID=cds168;Parent=gene168;Dbxref=EnsemblGenomes-Gn:azo0169,EnsemblGenomes-Tr:CAL92787,InterPro:IPR022061,UniProtKB/TrEMBL:A1K1T2,NCBI_GP:CAL92787.1;Name=CAL92787.1;Note=Conserved hypothetical secreted protein. Homology to bll7463 of B. japonicum of 30%25 (tremble:Q89DH6). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92787.1;transl_table=11
AM406670.1	EMBL	gene	186300	187760	.	-	.	ID=gene169;Name=gatB;gbkey=Gene;gene=gatB;gene_biotype=protein_coding;locus_tag=azo0170
AM406670.1	EMBL	CDS	186300	187760	.	-	0	ID=cds169;Parent=gene169;Dbxref=EnsemblGenomes-Gn:azo0170,EnsemblGenomes-Tr:CAL92788,GOA:A1K1T3,InterPro:IPR003789,InterPro:IPR004413,InterPro:IPR006075,InterPro:IPR017958,InterPro:IPR017959,InterPro:IPR018027,InterPro:IPR023168,NCBI_GP:CAL92788.1;Name=CAL92788.1;Note=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC 6.3.5.-) (Asp/Glu-ADT subunit B). Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)%3B~High confidence in function and specificity;gbkey=CDS;gene=gatB;product=glutamyl-tRNA(GLN) amidotransferase subunit B;protein_id=CAL92788.1;transl_table=11
AM406670.1	EMBL	gene	187818	188330	.	-	.	ID=gene170;Name=azo0171;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0171
AM406670.1	EMBL	CDS	187818	188330	.	-	0	ID=cds170;Parent=gene170;Dbxref=EnsemblGenomes-Gn:azo0171,EnsemblGenomes-Tr:CAL92789,UniProtKB/TrEMBL:A1K1T4,NCBI_GP:CAL92789.1;Name=CAL92789.1;Note=Conserved hypothetical secreted protein. Homology to an orf of Dechloromonas aromatica of 41%25 (gi|46141061|ref|ZP_00152875.2|(NBCI ENTREZ)). No domains predicted. Signal P reporting signal peptide present. NO TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92789.1;transl_table=11
AM406670.1	EMBL	gene	188336	189799	.	-	.	ID=gene171;Name=gatA;gbkey=Gene;gene=gatA;gene_biotype=protein_coding;locus_tag=azo0172
AM406670.1	EMBL	CDS	188336	189799	.	-	0	ID=cds171;Parent=gene171;Dbxref=EnsemblGenomes-Gn:azo0172,EnsemblGenomes-Tr:CAL92790,GOA:A1K1T5,InterPro:IPR000120,InterPro:IPR004412,InterPro:IPR020556,InterPro:IPR023631,NCBI_GP:CAL92790.1;Name=CAL92790.1;Note=Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-) (Glu-ADT subunit A). Furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu- tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) (By similarity). InterPro: Glutamyl-tRNA(Gln) amidotransferase A subunit gatA: glutamyl-tRNA(Gln) amidotransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=gatA;product=glutamyl-tRNA(GLN) amidotransferase subunit A;protein_id=CAL92790.1;transl_table=11
AM406670.1	EMBL	gene	189852	190139	.	-	.	ID=gene172;Name=gatC;gbkey=Gene;gene=gatC;gene_biotype=protein_coding;locus_tag=azo0173
AM406670.1	EMBL	CDS	189852	190139	.	-	0	ID=cds172;Parent=gene172;Dbxref=EnsemblGenomes-Gn:azo0173,EnsemblGenomes-Tr:CAL92791,GOA:A1K1T6,InterPro:IPR003837,NCBI_GP:CAL92791.1;Name=CAL92791.1;Note=Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.-) (Glu-ADT subunit C). Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).%3B~High confidence in function and specificity;gbkey=CDS;gene=gatC;product=glutamyl-tRNA(GLN) amidotransferase subunit C;protein_id=CAL92791.1;transl_table=11
AM406670.1	EMBL	gene	190256	191299	.	+	.	ID=gene173;Name=mreB;gbkey=Gene;gene=mreB;gene_biotype=protein_coding;locus_tag=azo0174
AM406670.1	EMBL	CDS	190256	191299	.	+	0	ID=cds173;Parent=gene173;Dbxref=EnsemblGenomes-Gn:azo0174,EnsemblGenomes-Tr:CAL92792,GOA:A1K1T7,InterPro:IPR004753,UniProtKB/TrEMBL:A1K1T7,NCBI_GP:CAL92792.1;Name=CAL92792.1;Note=Rod shape-determining protein mreB. INVOLVED IN FORMATION OF THE ROD SHAPE OF THE CELL. MAY ACT AS A NEGATIVE REGULATOR OF FTSI. InterPro: Cell shape determining protein MreB/Mrl mreB: cell shape determining protein%3B~High confidence in function and specificity;gbkey=CDS;gene=mreB;product=rod shape-determining protein MreB;protein_id=CAL92792.1;transl_table=11
AM406670.1	EMBL	gene	191345	192262	.	+	.	ID=gene174;Name=mreC;gbkey=Gene;gene=mreC;gene_biotype=protein_coding;locus_tag=azo0175
AM406670.1	EMBL	CDS	191345	192262	.	+	0	ID=cds174;Parent=gene174;Dbxref=EnsemblGenomes-Gn:azo0175,EnsemblGenomes-Tr:CAL92793,GOA:A1K1T8,InterPro:IPR007221,UniProtKB/TrEMBL:A1K1T8,NCBI_GP:CAL92793.1;Name=CAL92793.1;Note=Rod shape-determining protein mreC. Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins.%3B~High confidence in function and specificity;gbkey=CDS;gene=mreC;product=rod shape-determining protein;protein_id=CAL92793.1;transl_table=11
AM406670.1	EMBL	gene	192266	192787	.	+	.	ID=gene175;Name=mreD;gbkey=Gene;gene=mreD;gene_biotype=protein_coding;locus_tag=azo0176
AM406670.1	EMBL	CDS	192266	192787	.	+	0	ID=cds175;Parent=gene175;Dbxref=EnsemblGenomes-Gn:azo0176,EnsemblGenomes-Tr:CAL92794,GOA:A1K1T9,InterPro:IPR007227,InterPro:IPR026034,UniProtKB/TrEMBL:A1K1T9,NCBI_GP:CAL92794.1;Name=CAL92794.1;Note=Rod shape-determining protein mreD. Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins.%3B~High confidence in function and specificity;gbkey=CDS;gene=mreD;product=rod shape-determining protein;protein_id=CAL92794.1;transl_table=11
AM406670.1	EMBL	gene	192797	194686	.	+	.	ID=gene176;Name=pbpA;gbkey=Gene;gene=pbpA;gene_biotype=protein_coding;locus_tag=azo0177
AM406670.1	EMBL	CDS	192797	194686	.	+	0	ID=cds176;Parent=gene176;Dbxref=EnsemblGenomes-Gn:azo0177,EnsemblGenomes-Tr:CAL92795,GOA:A1K1U0,InterPro:IPR001460,InterPro:IPR005311,InterPro:IPR012338,InterPro:IPR017790,UniProtKB/TrEMBL:A1K1U0,NCBI_GP:CAL92795.1;Name=CAL92795.1;Note=Penicillin-binding protein 2 (PBP-2). CELL WALL FORMATION%3B PBP2 IS RESPONSIBLE FOR THE DETERMINATION OF THE ROD SHAPE OF THE CELL. ITS SYNTHESIZE CROSS- LINKED PEPTIDOGLYCAN FROM THE LIPID INTERMEDIATES. InterPro: Penicillin binding protein transpeptidase domain%3B~High confidence in function and specificity;gbkey=CDS;gene=pbpA;product=penicillin-binding protein;protein_id=CAL92795.1;transl_table=11
AM406670.1	EMBL	gene	194683	195819	.	+	.	ID=gene177;Name=rodA;gbkey=Gene;gene=rodA;gene_biotype=protein_coding;locus_tag=azo0178
AM406670.1	EMBL	CDS	194683	195819	.	+	0	ID=cds177;Parent=gene177;Dbxref=EnsemblGenomes-Gn:azo0178,EnsemblGenomes-Tr:CAL92796,GOA:A1K1U1,InterPro:IPR001182,InterPro:IPR011923,InterPro:IPR018365,UniProtKB/TrEMBL:A1K1U1,NCBI_GP:CAL92796.1;Name=CAL92796.1;Note=Rod shape-determining protein rodA. THIS IS ONE OF THE PROTEINS RESPONSIBLE FOR THE ROD SHAPE OF THE CELL. IT IS REQUIRED FOR THE EXPRESSION OF THE ENZYMATIC ACTIVITY OF PBP2 WHICH IS THOUGHT TO SYNTHESIZE PEPTIDOGLYCAN IN THE STEP OF INITIATION OF CELL ELONGATION.%3B~High confidence in function and specificity;gbkey=CDS;gene=rodA;product=rod shape-determining protein;protein_id=CAL92796.1;transl_table=11
AM406670.1	EMBL	gene	195800	196840	.	+	.	ID=gene178;Name=rlpA;gbkey=Gene;gene=rlpA;gene_biotype=protein_coding;locus_tag=azo0179
AM406670.1	EMBL	CDS	195800	196840	.	+	0	ID=cds178;Parent=gene178;Dbxref=EnsemblGenomes-Gn:azo0179,EnsemblGenomes-Tr:CAL92797,InterPro:IPR007730,InterPro:IPR009009,InterPro:IPR012997,UniProtKB/TrEMBL:A1K1U2,NCBI_GP:CAL92797.1;Name=CAL92797.1;Note=RlpA-like protein precursor.%3B~Function unclear;gbkey=CDS;gene=rlpA;product=lipoprotein;protein_id=CAL92797.1;transl_table=11
AM406670.1	EMBL	gene	196966	198096	.	+	.	ID=gene179;Name=dacC;gbkey=Gene;gene=dacC;gene_biotype=protein_coding;locus_tag=azo0180
AM406670.1	EMBL	CDS	196966	198096	.	+	0	ID=cds179;Parent=gene179;Dbxref=EnsemblGenomes-Gn:azo0180,EnsemblGenomes-Tr:CAL92798,GOA:A1K1U3,InterPro:IPR001967,InterPro:IPR012338,InterPro:IPR012907,InterPro:IPR015956,InterPro:IPR018044,UniProtKB/TrEMBL:A1K1U3,NCBI_GP:CAL92798.1;Name=CAL92798.1;Note=Probable D-alanyl-D-alanine carboxypeptidase. Homology to dacD of E. coli of 41%25 (sprot|DACD_ECOLI) Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Pfam: D-alanyl-D-alanine carboxypeptidase signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=dacC;product=probable D-alanyl-D-alanine carboxypeptidase;protein_id=CAL92798.1;transl_table=11
AM406670.1	EMBL	gene	198136	198993	.	+	.	ID=gene180;Name=daaA;gbkey=Gene;gene=daaA;gene_biotype=protein_coding;locus_tag=azo0181
AM406670.1	EMBL	CDS	198136	198993	.	+	0	ID=cds180;Parent=gene180;Dbxref=EnsemblGenomes-Gn:azo0181,EnsemblGenomes-Tr:CAL92799,GOA:A1K1U4,InterPro:IPR001544,UniProtKB/TrEMBL:A1K1U4,NCBI_GP:CAL92799.1;Name=CAL92799.1;Note=D-alanine aminotransferase (EC 2.6.1.21) (D-aspartate aminotransferase) (D-amino acid aminotransferase) (D-amino acid transaminase) (DAAT). Acts on the D-isomers of alanine Leucine aspartate glutamate aminobutyrate norvaline and asparagine (By similarity). InterPro: Aminotransferases class-IV%3B~High confidence in function and specificity;gbkey=CDS;gene=daaA;product=D-alanine transaminase;protein_id=CAL92799.1;transl_table=11
AM406670.1	EMBL	gene	198986	199267	.	+	.	ID=gene181;Name=azo0182;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0182
AM406670.1	EMBL	CDS	198986	199267	.	+	0	ID=cds181;Parent=gene181;Dbxref=EnsemblGenomes-Gn:azo0182,EnsemblGenomes-Tr:CAL92800,InterPro:IPR007454,InterPro:IPR027471,UniProtKB/TrEMBL:A1K1U5,NCBI_GP:CAL92800.1;Name=CAL92800.1;Note=Conserved hypothetical protein. Homology to RSC0326 of Ralstonia solanacearum of 53%25 (tremble:Q8Y2K9) Has PF04359%3BProtein of unknown function (DUF493)%3BThis family includes several proteins of uncharacterised function. InterPro%3BIPR007454 No Signal Peptdie or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92800.1;transl_table=11
AM406670.1	EMBL	gene	199264	199947	.	+	.	ID=gene182;Name=lipB;gbkey=Gene;gene=lipB;gene_biotype=protein_coding;locus_tag=azo0183
AM406670.1	EMBL	CDS	199264	199947	.	+	0	ID=cds182;Parent=gene182;Dbxref=EnsemblGenomes-Gn:azo0183,EnsemblGenomes-Tr:CAL92801,GOA:A1K1U6,InterPro:IPR000544,InterPro:IPR004143,InterPro:IPR020605,NCBI_GP:CAL92801.1;Name=CAL92801.1;Note=Lipoate-protein ligase B (EC 6.-.-.-) (Lipoate biosynthesis protein B). Involved in the attachment of lipoyl groups to proteins by creating an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoylated proteins (By similarity). InterPro: Lipoate-protein ligase B lipB: lipoate-protein ligase B%3B~High confidence in function and specificity;gbkey=CDS;gene=lipB;product=LipB protein;protein_id=CAL92801.1;transl_table=11
AM406670.1	EMBL	gene	199989	200936	.	+	.	ID=gene183;Name=lipA;gbkey=Gene;gene=lipA;gene_biotype=protein_coding;locus_tag=azo0184
AM406670.1	EMBL	CDS	199989	200936	.	+	0	ID=cds183;Parent=gene183;Dbxref=EnsemblGenomes-Gn:azo0184,EnsemblGenomes-Tr:CAL92802,GOA:A1K1U7,InterPro:IPR003698,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,NCBI_GP:CAL92802.1;Name=CAL92802.1;Note=Lipoic acid synthetase (Lip-syn) . Synthesis of alpha-(+)-lipoic acid. It may be involved in the sulfur insertion chemistry in lipoate biosynthesis (By similarity). InterPro: Lipoate synthase lipA: lipoic acid synthetase%3B~High confidence in function and specificity;gbkey=CDS;gene=lipA;product=lipoic acid synthetase;protein_id=CAL92802.1;transl_table=11
AM406670.1	EMBL	gene	201005	201682	.	+	.	ID=gene184;Name=azo0185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0185
AM406670.1	EMBL	CDS	201005	201682	.	+	0	ID=cds184;Parent=gene184;Dbxref=EnsemblGenomes-Gn:azo0185,EnsemblGenomes-Tr:CAL92803,InterPro:IPR025245,UniProtKB/TrEMBL:A1K1U8,NCBI_GP:CAL92803.1;Name=CAL92803.1;Note=Conserved hypothetical secreted protein. Homology to PP1518 of P. putida of 54%25 (trembl|Q88MQ2(SRS) No domains predicted Signal P reporting signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92803.1;transl_table=11
AM406670.1	EMBL	gene	201756	203750	.	+	.	ID=gene185;Name=rep;gbkey=Gene;gene=rep;gene_biotype=protein_coding;locus_tag=azo0186
AM406670.1	EMBL	CDS	201756	203750	.	+	0	ID=cds185;Parent=gene185;Dbxref=EnsemblGenomes-Gn:azo0186,EnsemblGenomes-Tr:CAL92804,GOA:A1K1U9,InterPro:IPR000212,InterPro:IPR013986,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR027417,UniProtKB/TrEMBL:A1K1U9,NCBI_GP:CAL92804.1;Name=CAL92804.1;Note=ATP-dependent DNA helicase rep (EC 3.6.1.-). REP HELICASE IS A SINGLE-STRANDED DNA-DEPENDENT ATPASE INVOLVED IN DNA REPLICATION%3B IT CAN INITIATE UNWINDING AT A NICK IN THE DNA. IT BINDS TO THE SINGLE-STRANDED DNA AND ACTS IN A PROGRESSIVE FASHION ALONG THE DNA IN THE 3 TO 5 DIRECTION (BY SIMILARITY). InterPro: UvrD/REP helicase.%3B~High confidence in function and specificity;gbkey=CDS;gene=rep;product=ATP-dependent DNA helicase;protein_id=CAL92804.1;transl_table=11
AM406670.1	EMBL	gene	203837	204298	.	-	.	ID=gene186;Name=azo0187;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0187
AM406670.1	EMBL	CDS	203837	204298	.	-	0	ID=cds186;Parent=gene186;Dbxref=EnsemblGenomes-Gn:azo0187,EnsemblGenomes-Tr:CAL92805,GOA:A1K1V0,InterPro:IPR002323,InterPro:IPR009056,UniProtKB/TrEMBL:A1K1V0,NCBI_GP:CAL92805.1;Name=CAL92805.1;Note=Conserved hypothetical cytochrome c5. Homology to vc0168 of V. cloreae of 38%25 (tremble: Q9KVH8). This basic c-type monoheme cytochrome has an unusally low redox potential compaired with mitochaondrial cytochrome C. It is reactive with cytochrome c oxidase but not with reductase. Pfam: Cytrochrome C probable signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical cytochrome c5;protein_id=CAL92805.1;transl_table=11
AM406670.1	EMBL	gene	204448	204524	.	+	.	ID=gene187;Name=tRNA-Arg;gbkey=Gene;gene=tRNA-Arg;gene_biotype=tRNA;locus_tag=azo_tRNA_0001
AM406670.1	EMBL	tRNA	204448	204524	.	+	.	ID=rna0;Parent=gene187;anticodon=(pos:204482..204484);gbkey=tRNA;gene=tRNA-Arg;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Arg
AM406670.1	EMBL	exon	204448	204524	.	+	.	ID=id1;Parent=rna0;anticodon=(pos:204482..204484);gbkey=tRNA;gene=tRNA-Arg;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Arg
AM406670.1	EMBL	gene	204806	206339	.	+	.	ID=gene188;Name=azo_rrn1;gbkey=Gene;gene_biotype=rRNA;locus_tag=azo_rrn1
AM406670.1	EMBL	rRNA	204806	206339	.	+	.	ID=rna1;Parent=gene188;gbkey=rRNA
AM406670.1	EMBL	exon	204806	206339	.	+	.	ID=id2;Parent=rna1;gbkey=rRNA
AM406670.1	EMBL	gene	206413	206489	.	+	.	ID=gene189;Name=tRNA-Ile;gbkey=Gene;gene=tRNA-Ile;gene_biotype=tRNA;locus_tag=azo_tRNA_0002
AM406670.1	EMBL	tRNA	206413	206489	.	+	.	ID=rna2;Parent=gene189;anticodon=(pos:206447..206449);gbkey=tRNA;gene=tRNA-Ile;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ile
AM406670.1	EMBL	exon	206413	206489	.	+	.	ID=id3;Parent=rna2;anticodon=(pos:206447..206449);gbkey=tRNA;gene=tRNA-Ile;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ile
AM406670.1	EMBL	gene	206517	206592	.	+	.	ID=gene190;Name=tRNA-Ala;gbkey=Gene;gene=tRNA-Ala;gene_biotype=tRNA;locus_tag=azo_tRNA_0003
AM406670.1	EMBL	tRNA	206517	206592	.	+	.	ID=rna3;Parent=gene190;anticodon=(pos:206550..206552);gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	exon	206517	206592	.	+	.	ID=id4;Parent=rna3;anticodon=(pos:206550..206552);gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	gene	206857	209743	.	+	.	ID=gene191;Name=azo_rrn2;gbkey=Gene;gene_biotype=rRNA;locus_tag=azo_rrn2
AM406670.1	EMBL	rRNA	206857	209743	.	+	.	ID=rna4;Parent=gene191;gbkey=rRNA
AM406670.1	EMBL	exon	206857	209743	.	+	.	ID=id5;Parent=rna4;gbkey=rRNA
AM406670.1	EMBL	gene	210014	210739	.	-	.	ID=gene192;Name=yueD;gbkey=Gene;gene=yueD;gene_biotype=protein_coding;locus_tag=azo0189
AM406670.1	EMBL	CDS	210014	210739	.	-	0	ID=cds187;Parent=gene192;Dbxref=EnsemblGenomes-Gn:azo0189,EnsemblGenomes-Tr:CAL92806,GOA:A1K1V1,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:A1K1V1,NCBI_GP:CAL92806.1;Name=CAL92806.1;Note=Putative benzil reductase. Homology to yueD of B. cereus of 32%25 (trembl|Q8RJ14). Belongs to the short-chain dehydrogenases/reductases (SDR) family. Transform benzil to (S)-benzion. Interpro: short-chain dehydrogenase/reductase SDR (IPR002198) Pfam: short chain dehydrogenase (PF00106) no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=yueD;product=putative benzil reductase;protein_id=CAL92806.1;transl_table=11
AM406670.1	EMBL	gene	210838	211857	.	+	.	ID=gene193;Name=azo0190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0190
AM406670.1	EMBL	CDS	210838	211857	.	+	0	ID=cds188;Parent=gene193;Dbxref=EnsemblGenomes-Gn:azo0190,EnsemblGenomes-Tr:CAL92807,GOA:A1K1V2,InterPro:IPR007358,UniProtKB/TrEMBL:A1K1V2,NCBI_GP:CAL92807.1;Name=CAL92807.1;Note=Conserved hypothetical protein. Homology to an orf of R. oxalatica of 31%25 (trembl|Q84ES1). Pfam: 37-kD nucleoid-associaed bacterial protein The Escherichia coli nucleoid contains DNA in a condensed but functional form. Analysis of proteins released from isolated spermidine nucleoids after treatment with DNase I reveals significant amounts of two proteins not previously detected in wild-type Escherichia coli. Partial amino-terminal sequencing has identified them as the products of rdgC and yejK. no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92807.1;transl_table=11
AM406670.1	EMBL	gene	211933	212409	.	+	.	ID=gene194;Name=azo0191;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0191
AM406670.1	EMBL	CDS	211933	212409	.	+	0	ID=cds189;Parent=gene194;Dbxref=EnsemblGenomes-Gn:azo0191,EnsemblGenomes-Tr:CAL92808,InterPro:IPR002539,InterPro:IPR029069,UniProtKB/TrEMBL:A1K1V3,NCBI_GP:CAL92808.1;Name=CAL92808.1;Note=Entry name TREMBL:Q988L8 Prim. accession # Q988L8 InterPro IPR002539%3B MaoC_dehydratas. Identities %3D 63/131 (48%25) Pfam PF01575%3B MaoC_dehydratas%3B 1. Number of predicted TMHs: 0 Probable MaoC protein (Phenylacetic acid degradation protein paaZ).;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92808.1;transl_table=11
AM406670.1	EMBL	gene	212402	213313	.	+	.	ID=gene195;Name=apbA1;gbkey=Gene;gene=apbA1;gene_biotype=protein_coding;locus_tag=azo0192
AM406670.1	EMBL	CDS	212402	213313	.	+	0	ID=cds190;Parent=gene195;Dbxref=EnsemblGenomes-Gn:azo0192,EnsemblGenomes-Tr:CAL92809,GOA:A1K1V4,InterPro:IPR003710,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR013332,InterPro:IPR013752,InterPro:IPR016040,UniProtKB/TrEMBL:A1K1V4,NCBI_GP:CAL92809.1;Name=CAL92809.1;Note=Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity). apbA_panE: 2-dehydropantoate 2-reductase%3B~Function unclear;gbkey=CDS;gene=apbA1;product=2-dehydropantoate 2-reductase;protein_id=CAL92809.1;transl_table=11
AM406670.1	EMBL	gene	213319	213780	.	-	.	ID=gene196;Name=trxC1;gbkey=Gene;gene=trxC1;gene_biotype=protein_coding;locus_tag=azo0193
AM406670.1	EMBL	CDS	213319	213780	.	-	0	ID=cds191;Parent=gene196;Dbxref=EnsemblGenomes-Gn:azo0193,EnsemblGenomes-Tr:CAL92810,GOA:A1K1V5,InterPro:IPR005746,InterPro:IPR012336,InterPro:IPR013766,InterPro:IPR017937,UniProtKB/TrEMBL:A1K1V5,NCBI_GP:CAL92810.1;Name=CAL92810.1;Note=Probable protein-disulfide reductase. Homology with trxC of E. coli of 45%25 (AAB88587). Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. InterPro: Thioredoxin Tigrfam: redox_disulf_1: redox-active disulfide Pfam: Thioredoxin no TMHs no signal peptide%3B~Family membership;gbkey=CDS;gene=trxC1;product=probable protein-disulfide reductase;protein_id=CAL92810.1;transl_table=11
AM406670.1	EMBL	gene	213935	214333	.	+	.	ID=gene197;Name=hvrA1;gbkey=Gene;gene=hvrA1;gene_biotype=protein_coding;locus_tag=azo0194
AM406670.1	EMBL	CDS	213935	214333	.	+	0	ID=cds192;Parent=gene197;Dbxref=EnsemblGenomes-Gn:azo0194,EnsemblGenomes-Tr:CAL92811,GOA:A1K1V6,InterPro:IPR001801,InterPro:IPR027444,UniProtKB/TrEMBL:A1K1V6,NCBI_GP:CAL92811.1;Name=CAL92811.1;Note=Putative trans-acting regulatory protein. Homology to hvrA of R. capsulatus of 27%25 (sprot|HVRA_RHOCA). The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions (e.g. light). Interpro: Histone -like nucleotide-structuring protein H-Ns (IPR001801) Pfam: H-NS histone family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=hvrA1;product=putative trans-acting regulatory protein HvrA;protein_id=CAL92811.1;transl_table=11
AM406670.1	EMBL	gene	214378	214626	.	+	.	ID=gene198;Name=azo0195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0195
AM406670.1	EMBL	CDS	214378	214626	.	+	0	ID=cds193;Parent=gene198;Dbxref=EnsemblGenomes-Gn:azo0195,EnsemblGenomes-Tr:CAL92812,InterPro:IPR011690,UniProtKB/TrEMBL:A1K1V7,NCBI_GP:CAL92812.1;Name=CAL92812.1;Note=Conserved hypothetical secreted protein. Homology to CV3728 of Chromobacterium violaceum of 57%25 (tremble:Q7NRQ2) No domains predicted. No TMHs signal peptide present%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92812.1;transl_table=11
AM406670.1	EMBL	gene	214688	215722	.	-	.	ID=gene199;Name=azo0196;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0196
AM406670.1	EMBL	CDS	214688	215722	.	-	0	ID=cds194;Parent=gene199;Dbxref=EnsemblGenomes-Gn:azo0196,EnsemblGenomes-Tr:CAL92813,InterPro:IPR011991,InterPro:IPR013196,InterPro:IPR026881,InterPro:IPR028349,UniProtKB/TrEMBL:A1K1V8,NCBI_GP:CAL92813.1;Name=CAL92813.1;Note=Conserved hypothetical transcription factor%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=consrved hypothetical transcription factor;protein_id=CAL92813.1;transl_table=11
AM406670.1	EMBL	gene	215834	216118	.	+	.	ID=gene200;Name=azo0197;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0197
AM406670.1	EMBL	CDS	215834	216118	.	+	0	ID=cds195;Parent=gene200;Dbxref=EnsemblGenomes-Gn:azo0197,EnsemblGenomes-Tr:CAL92814,UniProtKB/TrEMBL:A1K1V9,NCBI_GP:CAL92814.1;Name=CAL92814.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide. 1 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL92814.1;transl_table=11
AM406670.1	EMBL	gene	216106	217965	.	-	.	ID=gene201;Name=pabB;gbkey=Gene;gene=pabB;gene_biotype=protein_coding;locus_tag=azo0198
AM406670.1	EMBL	CDS	216106	217965	.	-	0	ID=cds196;Parent=gene201;Dbxref=EnsemblGenomes-Gn:azo0198,EnsemblGenomes-Tr:CAL92815,GOA:A1K1W0,InterPro:IPR001544,InterPro:IPR005801,InterPro:IPR015890,InterPro:IPR019999,UniProtKB/TrEMBL:A1K1W0,NCBI_GP:CAL92815.1;Name=CAL92815.1;Note=Para-aminobenzoate synthase component I (EC 4.1.3.-) (ADC synthase). CATALYZES THE BIOSYNTHESIS OF 4-AMINO-4-DEOXYCHORISMATE (ADC) FROM CHORISMATE AND GLUTAMINE. InterPro: Anthranilate synthase component I and chorismate binding enzyme pabB: para-aminobenzoate synthase component I%3B~Specificity unclear;gbkey=CDS;gene=pabB;product=para-aminobenzoate synthase component I / 4-amino-4-deoxycho;protein_id=CAL92815.1;transl_table=11
AM406670.1	EMBL	gene	218051	219196	.	+	.	ID=gene202;Name=sbcD;gbkey=Gene;gene=sbcD;gene_biotype=protein_coding;locus_tag=azo0199
AM406670.1	EMBL	CDS	218051	219196	.	+	0	ID=cds197;Parent=gene202;Dbxref=EnsemblGenomes-Gn:azo0199,EnsemblGenomes-Tr:CAL92816,GOA:A1K1W1,InterPro:IPR004593,InterPro:IPR004843,InterPro:IPR026843,InterPro:IPR029052,UniProtKB/TrEMBL:A1K1W1,NCBI_GP:CAL92816.1;Name=CAL92816.1;Note=Exonuclease sbcD homolog. Probably involved in genetic recombination. InterPro: DNA repair exonuclease. sbcd: exonuclease SbcD.%3B~High confidence in function and specificity;gbkey=CDS;gene=sbcD;product=exonuclease SbcD%2C putative;protein_id=CAL92816.1;transl_table=11
AM406670.1	EMBL	gene	219193	222264	.	+	.	ID=gene203;Name=sbcC;gbkey=Gene;gene=sbcC;gene_biotype=protein_coding;locus_tag=azo0200
AM406670.1	EMBL	CDS	219193	222264	.	+	0	ID=cds198;Parent=gene203;Dbxref=EnsemblGenomes-Gn:azo0200,EnsemblGenomes-Tr:CAL92817,GOA:A1K1W2,InterPro:IPR027050,InterPro:IPR027417,UniProtKB/TrEMBL:A1K1W2,NCBI_GP:CAL92817.1;Name=CAL92817.1;Note=Nuclease sbcCD subunit C. SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3->5 double strand exonuclease that can open hairpins. It also has a 5 single-strand endonuclease activity (By similarity). sbcc: exonuclease SbcC.%3B~High confidence in function and specificity;gbkey=CDS;gene=sbcC;product=exonuclease SbcC%2C putative;protein_id=CAL92817.1;transl_table=11
AM406670.1	EMBL	gene	222387	223202	.	-	.	ID=gene204;Name=azo0201;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0201
AM406670.1	EMBL	CDS	222387	223202	.	-	0	ID=cds199;Parent=gene204;Dbxref=EnsemblGenomes-Gn:azo0201,EnsemblGenomes-Tr:CAL92818,GOA:A1K1W3,InterPro:IPR000073,InterPro:IPR029058,UniProtKB/TrEMBL:A1K1W3,NCBI_GP:CAL92818.1;Name=CAL92818.1;Note=Arylesterase (EC 3.1.1.2) (Aryl-ester hydrolase) pir:C75401:39%25 identity%2C 52%25 similarity:hydrolase-related protein - Deinococcus radiodurans . IS A BIFUNCTIONAL ENZYME CAPABLE OF BOTH ESTER HYDROLYSIS AND HALOGENATION. ACTS ON MANY PHENOLIC ESTERS. Pfam: PF00561: alpha/beta hydrolase fold (74-271) InterPro: IPR000073: Alpha/beta hydrolase fold IPR000379: Esterase/lipase/thioesterase Pfam:Zn binding dehydrogenase mobB: molybdopterin-guanine dinucleotid%3B~Family membership;gbkey=CDS;product=probable aryl-ester hydrolase;protein_id=CAL92818.1;transl_table=11
AM406670.1	EMBL	gene	223457	224176	.	+	.	ID=gene205;Name=azo0202;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0202
AM406670.1	EMBL	CDS	223457	224176	.	+	0	ID=cds200;Parent=gene205;Dbxref=EnsemblGenomes-Gn:azo0202,EnsemblGenomes-Tr:CAL92819,GOA:A1K1W4,InterPro:IPR017896,UniProtKB/TrEMBL:A1K1W4,NCBI_GP:CAL92819.1;Name=CAL92819.1;Note=Conserved hypothetical protein. Homology only to r01975 of S. meliloti of 31%25 (trembl|Q92P21). no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92819.1;transl_table=11
AM406670.1	EMBL	gene	224493	225563	.	+	.	ID=gene206;Name=azo0203;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0203
AM406670.1	EMBL	CDS	224493	225563	.	+	0	ID=cds201;Parent=gene206;Dbxref=EnsemblGenomes-Gn:azo0203,EnsemblGenomes-Tr:CAL92820,InterPro:IPR007404,UniProtKB/TrEMBL:A1K1W5,NCBI_GP:CAL92820.1;Name=CAL92820.1;Note=TREMBL:Q82XH5: 33%25 identity%2C 44%25 similarity InterPro:IPR007404%3B DUF457. Pfam: PF04307%3B DUF457 fnt: formate/nitrite transporter Non-secretory protein with signal peptide probability of 0.391 TMHMM predicted 4 transmembrane helices%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92820.1;transl_table=11
AM406670.1	EMBL	gene	225594	226691	.	-	.	ID=gene207;Name=bmpA;gbkey=Gene;gene=bmpA;gene_biotype=protein_coding;locus_tag=azo0204
AM406670.1	EMBL	CDS	225594	226691	.	-	0	ID=cds202;Parent=gene207;Dbxref=EnsemblGenomes-Gn:azo0204,EnsemblGenomes-Tr:CAL92821,GOA:A1K1W6,InterPro:IPR003760,InterPro:IPR006311,InterPro:IPR028082,UniProtKB/TrEMBL:A1K1W6,NCBI_GP:CAL92821.1;Name=CAL92821.1;Note=Description:abc transporter periplasmic binding protein.This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family Probable CD4+ T cell-stimulating antigen precursor. TREMBL: Q8XXD8: 64%25 identity%2C 79%25 similarity InterPro:IPR003760%3B Bmp. Pfam: PF02608%3B Bmp Secretory protein with high signal peptide probablity (Signal P predicted). No. of transmembrane helices: 1 (TMHMM predicted) prok_nadp_idh: isocitrate dehydrogenas%3B~Specificity unclear;gbkey=CDS;gene=bmpA;product=probable lipoprotein;protein_id=CAL92821.1;transl_table=11
AM406670.1	EMBL	gene	226835	228079	.	-	.	ID=gene208;Name=hipO1;gbkey=Gene;gene=hipO1;gene_biotype=protein_coding;locus_tag=azo0205
AM406670.1	EMBL	CDS	226835	228079	.	-	0	ID=cds203;Parent=gene208;Dbxref=EnsemblGenomes-Gn:azo0205,EnsemblGenomes-Tr:CAL92822,GOA:A1K1W7,InterPro:IPR002933,InterPro:IPR011650,InterPro:IPR017439,UniProtKB/TrEMBL:A1K1W7,NCBI_GP:CAL92822.1;Name=CAL92822.1;Note=Hippurate hydrolase (EC 3.5.1.32) (Benzoylglycine amidohydrolase) (Hippuricase). TREMBL:Q7VUP2: 43%25 identity%2C 57%25 similarity InterPro%3B IPR002933%3B Peptidase_M20. InterPro%3B IPR010168%3B Pept_M20D_amidh. Pfam%3B PF01546%3B Peptidase_M20%3B 1. TIGRFAMs%3B TIGR01891%3B amidohydrolases TIGR00003: copper-ion-binding protein No signal peptide (Signal P predicted) No transmembrane helices present%3B~High confidence in function and specificity;gbkey=CDS;gene=hipO1;product=probable hippurate hydrolase;protein_id=CAL92822.1;transl_table=11
AM406670.1	EMBL	gene	228076	228660	.	-	.	ID=gene209;Name=azo0206;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0206
AM406670.1	EMBL	CDS	228076	228660	.	-	0	ID=cds204;Parent=gene209;Dbxref=EnsemblGenomes-Gn:azo0206,EnsemblGenomes-Tr:CAL92823,GOA:A1K1W8,InterPro:IPR009057,InterPro:IPR018060,UniProtKB/TrEMBL:A1K1W8,NCBI_GP:CAL92823.1;Name=CAL92823.1;Note=Putative AraC-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative AraC-family transcriptional regulator;protein_id=CAL92823.1;transl_table=11
AM406670.1	EMBL	gene	228700	229056	.	+	.	ID=gene210;Name=azo0207;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0207
AM406670.1	EMBL	CDS	228700	229056	.	+	0	ID=cds205;Parent=gene210;Dbxref=EnsemblGenomes-Gn:azo0207,EnsemblGenomes-Tr:CAL92824,InterPro:IPR008579,InterPro:IPR011051,InterPro:IPR014710,UniProtKB/TrEMBL:A1K1W9,NCBI_GP:CAL92824.1;Name=CAL92824.1;Note=Conserved hypothetical protein. Homology to bb1472 of B. bronchiseptica of 46%25 (trembl|Q7WMC0). Interpro: Protein of unknown function DUF861 (IPR008579). Pfam: Cupin_3 (former DUF861) (PFO5899). This family consists of several proteins which seem to be specific to plants and bacteria. The function of this family is unknown. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92824.1;transl_table=11
AM406670.1	EMBL	gene	229064	229267	.	-	.	ID=gene211;Name=azo0208;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0208
AM406670.1	EMBL	CDS	229064	229267	.	-	0	ID=cds206;Parent=gene211;Dbxref=EnsemblGenomes-Gn:azo0208,EnsemblGenomes-Tr:CAL92825,InterPro:IPR029060,UniProtKB/TrEMBL:A1K1X0,NCBI_GP:CAL92825.1;Name=CAL92825.1;Note=Hypothetical protein%2C 45%25 identity to TrEMBL%3BQ7U8P5. Weak Homology with hits. No domains%2Crepeats%2C motifs or features predicted Present.%3B~Function unclear;gbkey=CDS;product=Hypothetical protein;protein_id=CAL92825.1;transl_table=11
AM406670.1	EMBL	gene	229633	230862	.	-	.	ID=gene212;Name=agaE;gbkey=Gene;gene=agaE;gene_biotype=protein_coding;locus_tag=azo0209
AM406670.1	EMBL	CDS	229633	230862	.	-	0	ID=cds207;Parent=gene212;Dbxref=EnsemblGenomes-Gn:azo0209,EnsemblGenomes-Tr:CAL92826,GOA:A1K1X1,InterPro:IPR006076,UniProtKB/TrEMBL:A1K1X1,NCBI_GP:CAL92826.1;Name=CAL92826.1;Note=Sarcosine oxidase%2Csubunit beta counts to the FAD dependent oxidoreductases. Similar to trembl|Q88AX8 (49%25) and to trembl|Q987J9 (43%25). Pfam (PF01266): FAD dependent oxidoreductase Pfam (PF01494): FAD binding domain Pfam (PF00070): Pyridine nucleotide-disulphide oxidoreductase%3B~Function unclear;gbkey=CDS;gene=agaE;product=probable sarcosine oxidase%2C beta subunit;protein_id=CAL92826.1;transl_table=11
AM406670.1	EMBL	gene	230859	232241	.	-	.	ID=gene213;Name=ooxA;gbkey=Gene;gene=ooxA;gene_biotype=protein_coding;locus_tag=azo0210
AM406670.1	EMBL	CDS	230859	232241	.	-	0	ID=cds208;Parent=gene213;Dbxref=EnsemblGenomes-Gn:azo0210,EnsemblGenomes-Tr:CAL92827,GOA:A1K1X2,InterPro:IPR000103,InterPro:IPR013027,InterPro:IPR017224,InterPro:IPR023753,UniProtKB/TrEMBL:A1K1X2,NCBI_GP:CAL92827.1;Name=CAL92827.1;Note=Putative opine oxidase subunit A. Homology to ooxA of A. tumefaciens of 37%25 (sprot|OOXA_AGRT4). OXIDATIVE CLEAVAGE OF OCTOPINE INTO L-ARGININE AND PYRUVATE (BY SIMILARITY). InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327)%2C NAD-bining site (IPR000205) Pfam: Pyridine nucleotide-disulphide oxidoreductase no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=ooxA;product=putative opine oxidase subunit A;protein_id=CAL92827.1;transl_table=11
AM406670.1	EMBL	gene	232223	232552	.	-	.	ID=gene214;Name=azo0211;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0211
AM406670.1	EMBL	CDS	232223	232552	.	-	0	ID=cds209;Parent=gene214;Dbxref=EnsemblGenomes-Gn:azo0211,EnsemblGenomes-Tr:CAL92828,GOA:A1K1X3,InterPro:IPR001041,UniProtKB/TrEMBL:A1K1X3,NCBI_GP:CAL92828.1;Name=CAL92828.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92828.1;transl_table=11
AM406670.1	EMBL	gene	232564	233067	.	-	.	ID=gene215;Name=prp;gbkey=Gene;gene=prp;gene_biotype=protein_coding;locus_tag=azo0212
AM406670.1	EMBL	CDS	232564	233067	.	-	0	ID=cds210;Parent=gene215;Dbxref=EnsemblGenomes-Gn:azo0212,EnsemblGenomes-Tr:CAL92829,GOA:A1K1X4,InterPro:IPR000485,InterPro:IPR011008,InterPro:IPR011991,InterPro:IPR019885,InterPro:IPR019887,InterPro:IPR019888,UniProtKB/TrEMBL:A1K1X4,NCBI_GP:CAL92829.1;Name=CAL92829.1;Note=Probable proline dehydrogenase transcriptional activator. Similar to sprot|PUTR_AGRTU (31%25 Agrobacterium tumefaciens%2C proline dehydrogenase transcriptional activator prp or putR) InterPro: IPR000485 HTH_AsnC_lrp. Pfam: PF01037 AsnC family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=prp;product=probable proline dehydrogenase transcriptional activator;protein_id=CAL92829.1;transl_table=11
AM406670.1	EMBL	gene	233142	234524	.	-	.	ID=gene216;Name=azo0213;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0213
AM406670.1	EMBL	CDS	233142	234524	.	-	0	ID=cds211;Parent=gene216;Dbxref=EnsemblGenomes-Gn:azo0213,EnsemblGenomes-Tr:CAL92830,GOA:A1K1X5,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K1X5,NCBI_GP:CAL92830.1;Name=CAL92830.1;Note=Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (78-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase). bioA: adenosylmethionine--8-amino-7-oxononanoate aminotransferase%3B~Specificity unclear;gbkey=CDS;product=aminotransferase%2C class III;protein_id=CAL92830.1;transl_table=11
AM406670.1	EMBL	gene	235059	235934	.	-	.	ID=gene217;Name=azo0214;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0214
AM406670.1	EMBL	CDS	235059	235934	.	-	0	ID=cds212;Parent=gene217;Dbxref=EnsemblGenomes-Gn:azo0214,EnsemblGenomes-Tr:CAL92831,GOA:A1K1X6,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:A1K1X6,NCBI_GP:CAL92831.1;Name=CAL92831.1;Note=Conserved hypothetical acetyltransferase. Homology to putative acetaltransferase (GNAT family) of P. syringae of 42%25 (trembl|Q88AY8). Pfam: Acetyltransferase (GNAT) family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical acetyltransferase;protein_id=CAL92831.1;transl_table=11
AM406670.1	EMBL	gene	236153	237637	.	+	.	ID=gene218;Name=aldH;gbkey=Gene;gene=aldH;gene_biotype=protein_coding;locus_tag=azo0215
AM406670.1	EMBL	CDS	236153	237637	.	+	0	ID=cds213;Parent=gene218;Dbxref=EnsemblGenomes-Gn:azo0215,EnsemblGenomes-Tr:CAL92832,GOA:A1K1X7,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR029510,UniProtKB/TrEMBL:A1K1X7,NCBI_GP:CAL92832.1;Name=CAL92832.1;Note=Putative aldehyde dehydrogenase (NAD+) (EC 1.2.1.3). Homology to adlH of E. coli of 35%25 (sprot|DHAL_ECOLI). Aldehyde dehydrogenases (EC: 1.2.1.3 and EC: 1.2.1.5) are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=aldH;product=putative aldehyde dehydrogenase (NAD+);protein_id=CAL92832.1;transl_table=11
AM406670.1	EMBL	gene	237835	238500	.	+	.	ID=gene219;Name=hadL;gbkey=Gene;gene=hadL;gene_biotype=protein_coding;locus_tag=azo0216
AM406670.1	EMBL	CDS	237835	238500	.	+	0	ID=cds214;Parent=gene219;Dbxref=EnsemblGenomes-Gn:azo0216,EnsemblGenomes-Tr:CAL92833,GOA:A1K1X8,InterPro:IPR006328,InterPro:IPR006439,InterPro:IPR023214,UniProtKB/TrEMBL:A1K1X8,NCBI_GP:CAL92833.1;Name=CAL92833.1;Note=Probable 2-haloalkanoic acid dehalogenase (EC 3.8.1.2) (L-2-haloacid dehalogenase) (Halocarboxylic acid halidohydrolase). TREMBL:Q92Y68: 68%25 identity%2C 82%25 similarity These proteins catalyze the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids [1]. They belong to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases InterPro:IPR006328%3B HAD_II. IPR006388%3B HAD_SF_IA_v2. IPR005834%3B Hydrolase. Pfam PF00702%3B Hydrolase rpiB_lacA_lacB: sugar-phosphate isomer No signal peptide No transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;gene=hadL;product=probable haloalkanoic acid dehalogenase;protein_id=CAL92833.1;transl_table=11
AM406670.1	EMBL	gene	238541	239833	.	+	.	ID=gene220;Name=ordL;gbkey=Gene;gene=ordL;gene_biotype=protein_coding;locus_tag=azo0217
AM406670.1	EMBL	CDS	238541	239833	.	+	0	ID=cds215;Parent=gene220;Dbxref=EnsemblGenomes-Gn:azo0217,EnsemblGenomes-Tr:CAL92834,GOA:A1K1X9,InterPro:IPR006076,UniProtKB/TrEMBL:A1K1X9,NCBI_GP:CAL92834.1;Name=CAL92834.1;Note=This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase%2CSarcosine oxidase beta subunit%2C D-alanine oxidase%2C D-aspartate oxidase. Similar to trembl|Q88AY5 (61%25) and to sprot|ORDL_ECOLI (32%25). Pfam (PF01266): D-amino acid oxidase ProSite (PS50205): NAD binding site%3B~Family membership;gbkey=CDS;gene=ordL;product=FAD dependent oxidoreductase family protein;protein_id=CAL92834.1;transl_table=11
AM406670.1	EMBL	gene	239850	241457	.	+	.	ID=gene221;Name=dppA;gbkey=Gene;gene=dppA;gene_biotype=protein_coding;locus_tag=azo0218
AM406670.1	EMBL	CDS	239850	241457	.	+	0	ID=cds216;Parent=gene221;Dbxref=EnsemblGenomes-Gn:azo0218,EnsemblGenomes-Tr:CAL92835,GOA:A1K1Y0,InterPro:IPR000914,InterPro:IPR006311,UniProtKB/TrEMBL:A1K1Y0,NCBI_GP:CAL92835.1;Name=CAL92835.1;Note=Part of the ABC transporter complex dppABCD involved in dipeptide import. Similar to the dipeptide periplasmic-binding protein dppA in E.coli. DIPEPTIDE-BINDING PROTEIN OF AN OSMOTIC-SHOCKABLE TRANSPORT SYSTEM. DPPA IS ALSO REQUIRED FOR PEPTIDE CHEMOTAXIS. InterPro: Bacterial extracellular solute-binding protein family 5 Signal peptide%3B~Specificity unclear;gbkey=CDS;gene=dppA;product=putative dipeptide transport system%2C periplasmic-binding protein;protein_id=CAL92835.1;transl_table=11
AM406670.1	EMBL	gene	241462	242418	.	+	.	ID=gene222;Name=dppB;gbkey=Gene;gene=dppB;gene_biotype=protein_coding;locus_tag=azo0219
AM406670.1	EMBL	CDS	241462	242418	.	+	0	ID=cds217;Parent=gene222;Dbxref=EnsemblGenomes-Gn:azo0219,EnsemblGenomes-Tr:CAL92836,GOA:A1K1Y1,InterPro:IPR000515,UniProtKB/TrEMBL:A1K1Y1,NCBI_GP:CAL92836.1;Name=CAL92836.1;Note=Part of the ABC transporter complex dppABCD involved in dipeptide import. Probably responsible for the translocation of the substrate across the membrane. Similar to the dipeptide permease protein%2C DppB in E.coli.%3B~Specificity unclear;gbkey=CDS;gene=dppB;product=putative dipeptide transport system%2C permease protein;protein_id=CAL92836.1;transl_table=11
AM406670.1	EMBL	gene	242415	243290	.	+	.	ID=gene223;Name=dppC;gbkey=Gene;gene=dppC;gene_biotype=protein_coding;locus_tag=azo0220
AM406670.1	EMBL	CDS	242415	243290	.	+	0	ID=cds218;Parent=gene223;Dbxref=EnsemblGenomes-Gn:azo0220,EnsemblGenomes-Tr:CAL92837,GOA:A1K1Y2,InterPro:IPR000515,UniProtKB/TrEMBL:A1K1Y2,NCBI_GP:CAL92837.1;Name=CAL92837.1;Note=Part of the ABC transporter complex dppABCD involved in dipeptide import. Probably responsible for the translocation of the substrate across the membrane. Similar to the dipeptide permease protein%2C DppC in E.coli.%3B~Specificity unclear;gbkey=CDS;gene=dppC;product=ABC transporter%2C permease protein;protein_id=CAL92837.1;transl_table=11
AM406670.1	EMBL	gene	243283	245109	.	+	.	ID=gene224;Name=dppD;gbkey=Gene;gene=dppD;gene_biotype=protein_coding;locus_tag=azo0221
AM406670.1	EMBL	CDS	243283	245109	.	+	0	ID=cds219;Parent=gene224;Dbxref=EnsemblGenomes-Gn:azo0221,EnsemblGenomes-Tr:CAL92838,GOA:A1K1Y3,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR013563,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K1Y3,NCBI_GP:CAL92838.1;Name=CAL92838.1;Note=Part of the ABC transporter complex dppABCD involved in dipeptide import. Similar to the dipeptide transport membrane protein%2C DppD in E.coli Probably responsible for energy coupling to the transport system.%3B~Specificity unclear;gbkey=CDS;gene=dppD;product=putative dipeptide transport system%2C ATP-binding protein;protein_id=CAL92838.1;transl_table=11
AM406670.1	EMBL	gene	245317	246789	.	+	.	ID=gene225;Name=gabD1;gbkey=Gene;gene=gabD1;gene_biotype=protein_coding;locus_tag=azo0222
AM406670.1	EMBL	CDS	245317	246789	.	+	0	ID=cds220;Parent=gene225;Dbxref=EnsemblGenomes-Gn:azo0222,EnsemblGenomes-Tr:CAL92839,GOA:A1K1Y4,InterPro:IPR010102,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR029510,UniProtKB/TrEMBL:A1K1Y4,NCBI_GP:CAL92839.1;Name=CAL92839.1;Note=Probable succinate-semialdehyde dehydrogenase [NAD(P)+]. Homology to gabD of R. eutropha of 68%25 (AAF19796). Catalysis of the reaction: succinate semialdehyde + NAD(P)+ + H2O %3D succinate + NAD(P)H + H+. Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=gabD1;product=probable succinate-semialdehyde dehydrogenase [NAD(P)+];protein_id=CAL92839.1;transl_table=11
AM406670.1	EMBL	gene	247001	247369	.	+	.	ID=gene226;Name=azo0223;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0223
AM406670.1	EMBL	CDS	247001	247369	.	+	0	ID=cds221;Parent=gene226;Dbxref=EnsemblGenomes-Gn:azo0223,EnsemblGenomes-Tr:CAL92840,UniProtKB/TrEMBL:A1K1Y5,NCBI_GP:CAL92840.1;Name=CAL92840.1;Note=Conserved hypothetical secreted protein. Homology to an orf of Polaromonas sp. JS666 of 34%25 (ZP_00360285) . No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92840.1;transl_table=11
AM406670.1	EMBL	gene	247500	248717	.	+	.	ID=gene227;Name=azo0224;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0224
AM406670.1	EMBL	CDS	247500	248717	.	+	0	ID=cds222;Parent=gene227;Dbxref=EnsemblGenomes-Gn:azo0224,EnsemblGenomes-Tr:CAL92841,GOA:A1K1Y6,InterPro:IPR003423,UniProtKB/TrEMBL:A1K1Y6,NCBI_GP:CAL92841.1;Name=CAL92841.1;Note=Hypotethical outer membrane efflux protein. Homology to PA2525 of P. aeruginosa of 25%25. signal peptide. no TMHs;gbkey=CDS;product=hypothetical outer membrane efflux protein;protein_id=CAL92841.1;transl_table=11
AM406670.1	EMBL	gene	248714	249310	.	+	.	ID=gene228;Name=azo0225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0225
AM406670.1	EMBL	CDS	248714	249310	.	+	0	ID=cds223;Parent=gene228;Dbxref=EnsemblGenomes-Gn:azo0225,EnsemblGenomes-Tr:CAL92842,UniProtKB/TrEMBL:A1K1Y7,NCBI_GP:CAL92842.1;Name=CAL92842.1;Note=Hypothetical secreted protein. No homology to the data bank no domains predicted signal peptide no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL92842.1;transl_table=11
AM406670.1	EMBL	gene	249307	250452	.	+	.	ID=gene229;Name=azo0226;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0226
AM406670.1	EMBL	CDS	249307	250452	.	+	0	ID=cds224;Parent=gene229;Dbxref=EnsemblGenomes-Gn:azo0226,EnsemblGenomes-Tr:CAL92843,UniProtKB/TrEMBL:A1K1Y8,NCBI_GP:CAL92843.1;Name=CAL92843.1;Note=Conserved hypothetical secreted protein. Homology to cc1787 of C. crescentus of 30%25 (trembl|Q9A7D6) no domains predicted signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92843.1;transl_table=11
AM406670.1	EMBL	gene	250466	253597	.	+	.	ID=gene230;Name=czcA1;gbkey=Gene;gene=czcA1;gene_biotype=protein_coding;locus_tag=azo0227
AM406670.1	EMBL	CDS	250466	253597	.	+	0	ID=cds225;Parent=gene230;Dbxref=EnsemblGenomes-Gn:azo0227,EnsemblGenomes-Tr:CAL92844,GOA:A1K1Y9,InterPro:IPR001036,InterPro:IPR004763,InterPro:IPR027463,UniProtKB/TrEMBL:A1K1Y9,NCBI_GP:CAL92844.1;Name=CAL92844.1;Note=Cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA). In A.eutrophus has a low cation transport activity for cobalt%2C it is essential for the expression of cobalt%2C zinc%2C and cadmium resistance.Czca and Czcb together would act in zinc efflux nearly as effectively as the complete czc efflux system (czcABC).Belongs to the acrb/acrd/acrf family. 41%25 similarity to the A.eutrophus CzcA protein. SWISSPROT:CZCA_ALCEU:P13511 InterPro: Heavy metal efflux pump CzcA. InterPro:IPR001036%3B Acrflvin_res.IPR004763: CzcA. Pfam:PF00873%3B ACR_tran%3B 1. InterPro:TIGR00914:Heavy metal efflux pump CzcA InterPro:PF00873:Acriflavin resistance protein Signal peptide: present.%3B~High confidence in function and specificity;gbkey=CDS;gene=czcA1;product=putative cation efflux system protein;protein_id=CAL92844.1;transl_table=11
AM406670.1	EMBL	gene	253594	254088	.	+	.	ID=gene231;Name=azo0228;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0228
AM406670.1	EMBL	CDS	253594	254088	.	+	0	ID=cds226;Parent=gene231;Dbxref=EnsemblGenomes-Gn:azo0228,EnsemblGenomes-Tr:CAL92845,UniProtKB/TrEMBL:A1K1Z0,NCBI_GP:CAL92845.1;Name=CAL92845.1;Note=Hypothetical protein%2C 32%25 identity to TrEMBL%3BQ82T66 No Signal Peptide/Features/Domains/TMH detected.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL92845.1;transl_table=11
AM406670.1	EMBL	gene	254346	256517	.	+	.	ID=gene232;Name=fhuA1;gbkey=Gene;gene=fhuA1;gene_biotype=protein_coding;locus_tag=azo0229
AM406670.1	EMBL	CDS	254346	256517	.	+	0	ID=cds227;Parent=gene232;Dbxref=EnsemblGenomes-Gn:azo0229,EnsemblGenomes-Tr:CAL92846,GOA:A1K1Z1,InterPro:IPR000531,InterPro:IPR010105,InterPro:IPR010916,InterPro:IPR012910,UniProtKB/TrEMBL:A1K1Z1,NCBI_GP:CAL92846.1;Name=CAL92846.1;Note=In E.coli this receptor binds the ferrichrome-iron ligand. It interacts with the tonB protein%2C which is responsible for energy coupling of the ferrichrome-promoted iron transport system. Acts as a receptor for bacteriophage T5 as well as T1%2C phi80 and colicin M. Binding of T5 triggers the opening of a high conductance ion channel. Can also transport the antibiotic albomycin. Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=fhuA1;product=probable ferrichrome-iron TonB-dependent receptor;protein_id=CAL92846.1;transl_table=11
AM406670.1	EMBL	gene	256540	257289	.	+	.	ID=gene233;Name=azo0230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0230
AM406670.1	EMBL	CDS	256540	257289	.	+	0	ID=cds228;Parent=gene233;Dbxref=EnsemblGenomes-Gn:azo0230,EnsemblGenomes-Tr:CAL92847,InterPro:IPR008970,InterPro:IPR019613,UniProtKB/TrEMBL:A1K1Z2,NCBI_GP:CAL92847.1;Name=CAL92847.1;Note=Conserved hypothetical secreted protein. Homology to RPA1846 of R.palustris of 39%25 (trembl:Q6N8Q7). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92847.1;transl_table=11
AM406670.1	EMBL	gene	257937	259160	.	+	.	ID=gene234;Name=azo0231;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0231
AM406670.1	EMBL	CDS	257937	259160	.	+	0	ID=cds229;Parent=gene234;Dbxref=EnsemblGenomes-Gn:azo0231,EnsemblGenomes-Tr:CAL92848,InterPro:IPR012429,UniProtKB/TrEMBL:A1K1Z3,NCBI_GP:CAL92848.1;Name=CAL92848.1;Note=Conserved hypothetical membrane protein. Homology to SO1157 of Shewanella oneidensis of 50%25 (trembl|Q8EHR0(SRS)). No domains predicted. Signal peptide. 7 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92848.1;transl_table=11
AM406670.1	EMBL	gene	259217	260059	.	+	.	ID=gene235;Name=exbB1;gbkey=Gene;gene=exbB1;gene_biotype=protein_coding;locus_tag=azo0232
AM406670.1	EMBL	CDS	259217	260059	.	+	0	ID=cds230;Parent=gene235;Dbxref=EnsemblGenomes-Gn:azo0232,EnsemblGenomes-Tr:CAL92849,GOA:A1K1Z4,InterPro:IPR002898,UniProtKB/TrEMBL:A1K1Z4,NCBI_GP:CAL92849.1;Name=CAL92849.1;Note=Putative biopolymer transport protein ExbB. Homology to exbB of B. pertussis of 35%25. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. PFam: MotA/TolQ/ExbB proton channel family signals peptide most probable 4 TMHs%3B~Family membership;gbkey=CDS;gene=exbB1;product=putative biopolymer transport protein ExbB;protein_id=CAL92849.1;transl_table=11
AM406670.1	EMBL	gene	260085	260513	.	+	.	ID=gene236;Name=exbD1;gbkey=Gene;gene=exbD1;gene_biotype=protein_coding;locus_tag=azo0233
AM406670.1	EMBL	CDS	260085	260513	.	+	0	ID=cds231;Parent=gene236;Dbxref=EnsemblGenomes-Gn:azo0233,EnsemblGenomes-Tr:CAL92850,GOA:A1K1Z5,InterPro:IPR003400,UniProtKB/TrEMBL:A1K1Z5,NCBI_GP:CAL92850.1;Name=CAL92850.1;Note=putative biopolymer transport protein ExbD. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton grandient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH%3B~Family membership;gbkey=CDS;gene=exbD1;product=putative biopolymer transport protein ExbD;protein_id=CAL92850.1;transl_table=11
AM406670.1	EMBL	gene	260535	260960	.	+	.	ID=gene237;Name=exbD2;gbkey=Gene;gene=exbD2;gene_biotype=protein_coding;locus_tag=azo0234
AM406670.1	EMBL	CDS	260535	260960	.	+	0	ID=cds232;Parent=gene237;Dbxref=EnsemblGenomes-Gn:azo0234,EnsemblGenomes-Tr:CAL92851,GOA:A1K1Z6,InterPro:IPR003400,UniProtKB/TrEMBL:A1K1Z6,NCBI_GP:CAL92851.1;Name=CAL92851.1;Note=Putative biopolymer transport protein ExbD. Homology to exbD2 of X. campestris of 36%25 ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH%3B~Family membership;gbkey=CDS;gene=exbD2;product=putative biopolymer transport protein ExbD;protein_id=CAL92851.1;transl_table=11
AM406670.1	EMBL	gene	260989	261636	.	+	.	ID=gene238;Name=azo0235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0235
AM406670.1	EMBL	CDS	260989	261636	.	+	0	ID=cds233;Parent=gene238;Dbxref=EnsemblGenomes-Gn:azo0235,EnsemblGenomes-Tr:CAL92852,GOA:A1K1Z7,InterPro:IPR006260,UniProtKB/TrEMBL:A1K1Z7,NCBI_GP:CAL92852.1;Name=CAL92852.1;Note=Conserved hypothetical membrane protein. Homology to an orf of Rubrivivax gelatinosus of 55%25 (gi|47575633|ref|ZP_00245668.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92852.1;transl_table=11
AM406670.1	EMBL	gene	261880	262902	.	-	.	ID=gene239;Name=add;gbkey=Gene;gene=add;gene_biotype=protein_coding;locus_tag=azo0236
AM406670.1	EMBL	CDS	261880	262902	.	-	0	ID=cds234;Parent=gene239;Dbxref=EnsemblGenomes-Gn:azo0236,EnsemblGenomes-Tr:CAL92853,GOA:A1K1Z8,InterPro:IPR001365,InterPro:IPR006330,InterPro:IPR028892,UniProtKB/TrEMBL:A1K1Z8,NCBI_GP:CAL92853.1;Name=CAL92853.1;Note=Adenosine deaminase (Adenosine aminohydrolase). InterPro: Adenosine and AMP deaminase%3B~High confidence in function and specificity;gbkey=CDS;gene=add;product=adenosine deaminase;protein_id=CAL92853.1;transl_table=11
AM406670.1	EMBL	gene	262974	263831	.	-	.	ID=gene240;Name=npd1;gbkey=Gene;gene=npd1;gene_biotype=protein_coding;locus_tag=azo0237
AM406670.1	EMBL	CDS	262974	263831	.	-	0	ID=cds235;Parent=gene240;Dbxref=EnsemblGenomes-Gn:azo0237,EnsemblGenomes-Tr:CAL92854,GOA:A1K1Z9,InterPro:IPR003000,InterPro:IPR026590,InterPro:IPR026591,InterPro:IPR029035,UniProtKB/TrEMBL:A1K1Z9,NCBI_GP:CAL92854.1;Name=CAL92854.1;Note=Putative NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein SIR2 homolog). Modulates the activities of several enzymes which are inactive in their acetylated form. Similar to SWISSPROT: sprot|NPD_AERPE (27%25 Aeropyrum pernix%2C NpdA or aq_2170) Pfam: PF02146 Sir2 family.%3B~High confidence in function and specificity;gbkey=CDS;gene=npd1;product=putative NAD-dependent deacetylase;protein_id=CAL92854.1;transl_table=11
AM406670.1	EMBL	gene	263828	264958	.	-	.	ID=gene241;Name=azo0238;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0238
AM406670.1	EMBL	CDS	263828	264958	.	-	0	ID=cds236;Parent=gene241;Dbxref=EnsemblGenomes-Gn:azo0238,EnsemblGenomes-Tr:CAL92855,UniProtKB/TrEMBL:A1K200,NCBI_GP:CAL92855.1;Name=CAL92855.1;Note=Hypothetical membrane protein no homology to the data bank no domains predicted no signal predicted 7 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL92855.1;transl_table=11
AM406670.1	EMBL	gene	264970	266250	.	-	.	ID=gene242;Name=azo0239;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0239
AM406670.1	EMBL	CDS	264970	266250	.	-	0	ID=cds237;Parent=gene242;Dbxref=EnsemblGenomes-Gn:azo0239,EnsemblGenomes-Tr:CAL92856,GOA:A1K201,InterPro:IPR009056,InterPro:IPR025874,UniProtKB/TrEMBL:A1K201,NCBI_GP:CAL92856.1;Name=CAL92856.1;Note=Hypothetical protein%2C showing only very low similarity to known proteins (SWISSPROT: sprot|FRAH_ANASP%3B >10%25 Anabaena sp.%2C FraH). Important Domains are: Pfam: PF00034 Cytochrome c. SMART: SM00438 ZnF_NFX TMHMM reporting 1 transmembrane helices.;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL92856.1;transl_table=11
AM406670.1	EMBL	gene	266442	267473	.	+	.	ID=gene243;Name=dctP1;gbkey=Gene;gene=dctP1;gene_biotype=protein_coding;locus_tag=azo0240
AM406670.1	EMBL	CDS	266442	267473	.	+	0	ID=cds238;Parent=gene243;Dbxref=EnsemblGenomes-Gn:azo0240,EnsemblGenomes-Tr:CAL92857,GOA:A1K202,InterPro:IPR004682,InterPro:IPR018389,UniProtKB/TrEMBL:A1K202,NCBI_GP:CAL92857.1;Name=CAL92857.1;Note=Putative ABC transporter periplasmic binding protein%2C DctP: TRAP dicarboxylate transporter.Binds C4-dicarboxylates%3B part of the binding-protein- dependent transport system for uptake of c4-dicarboxylates. 28%25 TRAP_transptDctP. Pfam:PF03480%3B SBP_bac_7%3B 1. TIGRFAMs:TIGR00787%3B dctP%3B 1. Signal peptide:present. TMhelix:1%3B~Specificity unclear;gbkey=CDS;gene=dctP1;product=putative C4-dicarboxylate-binding periplasmic protein;protein_id=CAL92857.1;transl_table=11
AM406670.1	EMBL	gene	267570	268058	.	+	.	ID=gene244;Name=dctQ1;gbkey=Gene;gene=dctQ1;gene_biotype=protein_coding;locus_tag=azo0241
AM406670.1	EMBL	CDS	267570	268058	.	+	0	ID=cds239;Parent=gene244;Dbxref=EnsemblGenomes-Gn:azo0241,EnsemblGenomes-Tr:CAL92858,InterPro:IPR007387,UniProtKB/TrEMBL:A1K203,NCBI_GP:CAL92858.1;Name=CAL92858.1;Note=C4-dicarboxylate transport system%2Cpermease small protein%2CDctQ. The Dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 22%25 DctQ. Pfam:PF04290%3B DctQ%3B 1. TMHelix:4.%3B~High confidence in function and specificity;gbkey=CDS;gene=dctQ1;product=DctQ1 protein;protein_id=CAL92858.1;transl_table=11
AM406670.1	EMBL	gene	268055	269338	.	+	.	ID=gene245;Name=dctM1;gbkey=Gene;gene=dctM1;gene_biotype=protein_coding;locus_tag=azo0242
AM406670.1	EMBL	CDS	268055	269338	.	+	0	ID=cds240;Parent=gene245;Dbxref=EnsemblGenomes-Gn:azo0242,EnsemblGenomes-Tr:CAL92859,GOA:A1K204,InterPro:IPR004681,InterPro:IPR010656,UniProtKB/TrEMBL:A1K204,NCBI_GP:CAL92859.1;Name=CAL92859.1;Note=TRAP-type C4-dicarboxylate transport system%2C large permease component%2C DctM.The Dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 34%25 DctM.IPR000252%3B DedA.IPR004681%3B TRAP_transptDctM. Pfam:PF06808%3B DctM%3B 1.PF00597%3B DedA%3B 1. TIGRFAMs:TIGR00786%3B dctM%3B 1. Signal peptide: present. TMhelix:11.%3B~Specificity unclear;gbkey=CDS;gene=dctM1;product=probable TRAP-type C4-dicarboxylate transport system%2C large permease component;protein_id=CAL92859.1;transl_table=11
AM406670.1	EMBL	gene	269367	270011	.	-	.	ID=gene246;Name=uidR;gbkey=Gene;gene=uidR;gene_biotype=protein_coding;locus_tag=azo0243
AM406670.1	EMBL	CDS	269367	270011	.	-	0	ID=cds241;Parent=gene246;Dbxref=EnsemblGenomes-Gn:azo0243,EnsemblGenomes-Tr:CAL92860,GOA:A1K205,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:A1K205,NCBI_GP:CAL92860.1;Name=CAL92860.1;Note=Putative TetR family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;gene=uidR;product=putative TetR family transcriptional regulator;protein_id=CAL92860.1;transl_table=11
AM406670.1	EMBL	gene	270224	271426	.	+	.	ID=gene247;Name=azo0244;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0244
AM406670.1	EMBL	CDS	270224	271426	.	+	0	ID=cds242;Parent=gene247;Dbxref=EnsemblGenomes-Gn:azo0244,EnsemblGenomes-Tr:CAL92861,GOA:A1K206,InterPro:IPR006143,UniProtKB/TrEMBL:A1K206,NCBI_GP:CAL92861.1;Name=CAL92861.1;Note=HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C TREMBL:Q8XRL2 (55%25 identity)%3B SWISSPROT:P31223 (53%25 identity). Pfam (PF00529): HlyD family secretion protein. SignalP predicting signal peptide. TC (8.A.1): The Membrane Fusion Protein (MFP) Family.%3B~Family membership;gbkey=CDS;product=membrane fusion protein;protein_id=CAL92861.1;transl_table=11
AM406670.1	EMBL	gene	271438	274596	.	+	.	ID=gene248;Name=azo0245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0245
AM406670.1	EMBL	CDS	271438	274596	.	+	0	ID=cds243;Parent=gene248;Dbxref=EnsemblGenomes-Gn:azo0245,EnsemblGenomes-Tr:CAL92862,GOA:A1K207,InterPro:IPR001036,InterPro:IPR004764,InterPro:IPR027463,UniProtKB/TrEMBL:A1K207,NCBI_GP:CAL92862.1;Name=CAL92862.1;Note=Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q8E8H2 (65%25 identity)%3B SWISSPROT:P31224 (63%25 identity). InterPro (IPR001036): Acriflavin resistance protein. InterPro (IPR004764): Hydrophobe/amphiphile efflux-1 HAE1. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. Pfam (PF00873): AcrB/AcrD/AcrF family. TMHMM reporting 12 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear;gbkey=CDS;product=RND efflux transporter%2C permease protein;protein_id=CAL92862.1;transl_table=11
AM406670.1	EMBL	gene	274611	276014	.	+	.	ID=gene249;Name=oprM1;gbkey=Gene;gene=oprM1;gene_biotype=protein_coding;locus_tag=azo0246
AM406670.1	EMBL	CDS	274611	276014	.	+	0	ID=cds244;Parent=gene249;Dbxref=EnsemblGenomes-Gn:azo0246,EnsemblGenomes-Tr:CAL92863,GOA:A1K208,InterPro:IPR003423,InterPro:IPR010131,UniProtKB/TrEMBL:A1K208,NCBI_GP:CAL92863.1;Name=CAL92863.1;Note=Probable outer membrane efflux protein. Homology to oprM of P. aeruginosa of 57%25. Component of an efflux system that confers multidrug or multible antibiotic resistence. Pfam: Outer membrane efflux protein signal peptide no TMHS%3B~Family membership;gbkey=CDS;gene=oprM1;product=probable outer membrane efflux protein;protein_id=CAL92863.1;transl_table=11
AM406670.1	EMBL	gene	276172	276657	.	+	.	ID=gene250;Name=bfr1;gbkey=Gene;gene=bfr1;gene_biotype=protein_coding;locus_tag=azo0247
AM406670.1	EMBL	CDS	276172	276657	.	+	0	ID=cds245;Parent=gene250;Dbxref=EnsemblGenomes-Gn:azo0247,EnsemblGenomes-Tr:CAL92864,GOA:A1K209,InterPro:IPR002024,InterPro:IPR008331,InterPro:IPR009040,InterPro:IPR009078,InterPro:IPR012347,UniProtKB/TrEMBL:A1K209,NCBI_GP:CAL92864.1;Name=CAL92864.1;Note=Bacterioferritin (BFR) (Cytochrome B-1) (Cytochrome B-557). In E. coli is an iron-storage protein consisting of 24 identical subunits that pack together to form a highly symmetrical%2C nearly spherical shell surrounding a central cavity of about 8 nm diameter.X-ray crystallographic studies have revealed a close structural similarity between BFR and the ferritins%2C a family of iron-storage proteins found in both eukaryota and prokaryota. Key role in iron homeostasis. InterPro: Bacterioferritin. Non-secretory protein%3B~High confidence in function and specificity;gbkey=CDS;gene=bfr1;product=putative bacterioferritin;protein_id=CAL92864.1;transl_table=11
AM406670.1	EMBL	gene	276847	277365	.	+	.	ID=gene251;Name=dksA1;gbkey=Gene;gene=dksA1;gene_biotype=protein_coding;locus_tag=azo0248
AM406670.1	EMBL	CDS	276847	277365	.	+	0	ID=cds246;Parent=gene251;Dbxref=EnsemblGenomes-Gn:azo0248,EnsemblGenomes-Tr:CAL92865,GOA:A1K210,InterPro:IPR000962,InterPro:IPR012784,InterPro:IPR020458,UniProtKB/TrEMBL:A1K210,NCBI_GP:CAL92865.1;Name=CAL92865.1;Note=Probable dnaK suppressor protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=dksA1;product=probable dnaK suppressor protein;protein_id=CAL92865.1;transl_table=11
AM406670.1	EMBL	gene	277409	277567	.	+	.	ID=gene252;Name=azo0249;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0249
AM406670.1	EMBL	CDS	277409	277567	.	+	0	ID=cds247;Parent=gene252;Dbxref=EnsemblGenomes-Gn:azo0249,EnsemblGenomes-Tr:CAL92866,UniProtKB/TrEMBL:A1K211,NCBI_GP:CAL92866.1;Name=CAL92866.1;Note=Hypothetical protein. No homology to the data bank. No domains predicted. No signal peptide. No TMHS;gbkey=CDS;product=hypothetical protein;protein_id=CAL92866.1;transl_table=11
AM406670.1	EMBL	gene	277561	278289	.	-	.	ID=gene253;Name=azo0250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0250
AM406670.1	EMBL	CDS	277561	278289	.	-	0	ID=cds248;Parent=gene253;Dbxref=EnsemblGenomes-Gn:azo0250,EnsemblGenomes-Tr:CAL92867,GOA:A1K212,InterPro:IPR000951,InterPro:IPR001433,InterPro:IPR008333,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K212,NCBI_GP:CAL92867.1;Name=CAL92867.1;Note=Hypothetical flavodoxin reductase. Homology to the N-terminal part of bb4317 of B. bronchisptica of 40%25 (trembl|Q7WFF6). InterPro: Oxidoreductase FAD and NAD(P)-binding domain ((IPR001433)%3B NADH: cytochrome b5 reductase (CBR) (IPR001834) Pfam: Oxidorectase FAD-binding domain%3B Oxidoreductase NAD-binding domain no signal peptide no TMHs;gbkey=CDS;product=hypothetical flavodoxin reductase;protein_id=CAL92867.1;transl_table=11
AM406670.1	EMBL	gene	278417	279895	.	+	.	ID=gene254;Name=azo0251;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0251
AM406670.1	EMBL	CDS	278417	279895	.	+	0	ID=cds249;Parent=gene254;Dbxref=EnsemblGenomes-Gn:azo0251,EnsemblGenomes-Tr:CAL92868,InterPro:IPR021296,UniProtKB/TrEMBL:A1K213,NCBI_GP:CAL92868.1;Name=CAL92868.1;Note=Conserved hypothetical membrane protein%2C 38%25 similarity to trEMBL%3BQ7WDT1%2CPutative membrane protein [BB4906] [Bordetella bronchiseptica (Alcaligenes bronchisepticus)]. TMHMM2 predicts 6 TMH's present. No signal peptide present.%3B~Family membership;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92868.1;transl_table=11
AM406670.1	EMBL	gene	279963	281318	.	+	.	ID=gene255;Name=azo0252;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0252
AM406670.1	EMBL	CDS	279963	281318	.	+	0	ID=cds250;Parent=gene255;Dbxref=EnsemblGenomes-Gn:azo0252,EnsemblGenomes-Tr:CAL92869,GOA:A1K214,InterPro:IPR006073,InterPro:IPR021871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K214,NCBI_GP:CAL92869.1;Name=CAL92869.1;Note=conserved hypothetical protein%2C 54%25 identity to TrEMBL%3BQ9JYD1 Hypothetical protein NMB1644 [NMB1644] [Neisseria meningitidis(serogroup B)]. Has PF00009:Elongation factor Tu GTP binding domain:IPR000795 ProtSyn_GTPbind: This domain contains a P-loop motif%2C also found in several other families such as Ras%2C Arf and Myosin_head. Elongation factor Tu consists of three structural domains%2C this plus two C-terminal beta barrel domains. Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis%2Cand catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini%2C and are also highly;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92869.1;transl_table=11
AM406670.1	EMBL	gene	281341	282051	.	-	.	ID=gene256;Name=azo0253;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0253
AM406670.1	EMBL	CDS	281341	282051	.	-	0	ID=cds251;Parent=gene256;Dbxref=EnsemblGenomes-Gn:azo0253,EnsemblGenomes-Tr:CAL92870,InterPro:IPR029063,UniProtKB/TrEMBL:A1K215,NCBI_GP:CAL92870.1;Name=CAL92870.1;Note=Conserved hypothetical protein. Homology to MCA0921 of Methylococcus capsulatus of 54%25 (trembl:Q60AE3). N domains predicted. No TMHs. NO signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92870.1;transl_table=11
AM406670.1	EMBL	gene	282048	282746	.	-	.	ID=gene257;Name=azo0254;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0254
AM406670.1	EMBL	CDS	282048	282746	.	-	0	ID=cds252;Parent=gene257;Dbxref=EnsemblGenomes-Gn:azo0254,EnsemblGenomes-Tr:CAL92871,GOA:A1K216,InterPro:IPR002509,InterPro:IPR011330,UniProtKB/TrEMBL:A1K216,NCBI_GP:CAL92871.1;Name=CAL92871.1;Note=Conserved polysaccharide deacetylase. Homology to rs03397 of R. solanacearum of 62%25 (trembl|Q8Y2A8). Interpro: Polysaccharide deacetylase (IPR002509). Pfam: Polysaccharide deacetylase (PF01522). The family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast%2C and endoxylanases which hydrolyses glucosidic bonds in xylan. No signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical polysaccharide deacetylase;protein_id=CAL92871.1;transl_table=11
AM406670.1	EMBL	gene	282948	283649	.	-	.	ID=gene258;Name=azo0255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0255
AM406670.1	EMBL	CDS	282948	283649	.	-	0	ID=cds253;Parent=gene258;Dbxref=EnsemblGenomes-Gn:azo0255,EnsemblGenomes-Tr:CAL92872,InterPro:IPR029058,UniProtKB/TrEMBL:A1K217,NCBI_GP:CAL92872.1;Name=CAL92872.1;Note=Hypothetical protein. No good homology to the data bank. No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=hypothetical protein;protein_id=CAL92872.1;transl_table=11
AM406670.1	EMBL	gene	283646	286057	.	-	.	ID=gene259;Name=azo0256;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0256
AM406670.1	EMBL	CDS	283646	286057	.	-	0	ID=cds254;Parent=gene259;Dbxref=EnsemblGenomes-Gn:azo0256,EnsemblGenomes-Tr:CAL92873,GOA:A1K218,InterPro:IPR004869,UniProtKB/TrEMBL:A1K218,NCBI_GP:CAL92873.1;Name=CAL92873.1;Note=Conserved hypothetical membrane protein. Homology to rsc0429 of R. solanacearum of 52%25 (trembl|Q8Y2A7). Tigrfam: 2A0604s01: protein-export membrane protein signal peptide 10 TMHs%3B~Function unclear;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92873.1;transl_table=11
AM406670.1	EMBL	gene	286054	286632	.	-	.	ID=gene260;Name=azo0257;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0257
AM406670.1	EMBL	CDS	286054	286632	.	-	0	ID=cds255;Parent=gene260;Dbxref=EnsemblGenomes-Gn:azo0257,EnsemblGenomes-Tr:CAL92874,InterPro:IPR029046,UniProtKB/TrEMBL:A1K219,NCBI_GP:CAL92874.1;Name=CAL92874.1;Note=Conserved hypothetical secreted protein. Homology to RS03399 of R. solanacearum of 47%25 (trembl|Q8Y2A6(SRS)) No domains predicted. Signal Peptide present. No TMH reported.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92874.1;transl_table=11
AM406670.1	EMBL	gene	286629	287561	.	-	.	ID=gene261;Name=azo0258;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0258
AM406670.1	EMBL	CDS	286629	287561	.	-	0	ID=cds256;Parent=gene261;Dbxref=EnsemblGenomes-Gn:azo0258,EnsemblGenomes-Tr:CAL92875,GOA:A1K220,InterPro:IPR004960,InterPro:IPR014548,UniProtKB/TrEMBL:A1K220,NCBI_GP:CAL92875.1;Name=CAL92875.1;Note=Conserved hypothetical acetyltransferase. Homology to rsc0431 of R. solanacearum of 61%25 (trembl|Q8Y2A5) Pfam: Bacterial lipid A biosynthesis acetyltransferase no signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical acetyltransferase;protein_id=CAL92875.1;transl_table=11
AM406670.1	EMBL	gene	287558	287869	.	-	.	ID=gene262;Name=azo0259;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0259
AM406670.1	EMBL	CDS	287558	287869	.	-	0	ID=cds257;Parent=gene262;Dbxref=EnsemblGenomes-Gn:azo0259,EnsemblGenomes-Tr:CAL92876,InterPro:IPR013114,InterPro:IPR029069,UniProtKB/TrEMBL:A1K221,NCBI_GP:CAL92876.1;Name=CAL92876.1;Note=Conserved hypothetical protein. Homology to xac 4098 of X. axonapodis of 36%25 (trembl|Q8PF87). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92876.1;transl_table=11
AM406670.1	EMBL	gene	287866	289215	.	-	.	ID=gene263;Name=azo0260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0260
AM406670.1	EMBL	CDS	287866	289215	.	-	0	ID=cds258;Parent=gene263;Dbxref=EnsemblGenomes-Gn:azo0260,EnsemblGenomes-Tr:CAL92877,GOA:A1K222,InterPro:IPR000873,InterPro:IPR025110,UniProtKB/TrEMBL:A1K222,NCBI_GP:CAL92877.1;Name=CAL92877.1;Note=Entry name:- TREMBL:Q87EI7 InterPro:- IPR000873%3B AMP-bind. Pfam:- PF00501%3B AMP-binding%3B 2. Identity :- 45%25 Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92877.1;transl_table=11
AM406670.1	EMBL	gene	289232	289885	.	-	.	ID=gene264;Name=azo0261;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0261
AM406670.1	EMBL	CDS	289232	289885	.	-	0	ID=cds259;Parent=gene264;Dbxref=EnsemblGenomes-Gn:azo0261,EnsemblGenomes-Tr:CAL92878,UniProtKB/TrEMBL:A1K223,NCBI_GP:CAL92878.1;Name=CAL92878.1;Note=Conserved hypothetical membrane protein. Homology to rsc3402 of R. solanacearum of 46%25 (trembl|Q8Y2A3(SRS)) no domains predicted signal peptide 5 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92878.1;transl_table=11
AM406670.1	EMBL	gene	289885	290169	.	-	.	ID=gene265;Name=azo0262;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0262
AM406670.1	EMBL	CDS	289885	290169	.	-	0	ID=cds260;Parent=gene265;Dbxref=EnsemblGenomes-Gn:azo0262,EnsemblGenomes-Tr:CAL92879,InterPro:IPR009081,UniProtKB/TrEMBL:A1K224,NCBI_GP:CAL92879.1;Name=CAL92879.1;Note=Similar to TREMBL:Q9PFA7 (61%25 identity)%3B TREMBL:Q87AD9 (61%25 identity)%3B SWISSPROT:Q7VKH6 (34%25 identity).%3B~Function unclear%3B~ORF1;gbkey=CDS;product=hypothetical protein;protein_id=CAL92879.1;transl_table=11
AM406670.1	EMBL	gene	290292	291683	.	-	.	ID=gene266;Name=azo0263;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0263
AM406670.1	EMBL	CDS	290292	291683	.	-	0	ID=cds261;Parent=gene266;Dbxref=EnsemblGenomes-Gn:azo0263,EnsemblGenomes-Tr:CAL92880,GOA:A1K225,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1K225,NCBI_GP:CAL92880.1;Name=CAL92880.1;Note=Probable sensor protein%2C%3B~High confidence in function and specificity;gbkey=CDS;product=probable two-component system histidine kinase;protein_id=CAL92880.1;transl_table=11
AM406670.1	EMBL	gene	291680	292336	.	-	.	ID=gene267;Name=qseB1;gbkey=Gene;gene=qseB1;gene_biotype=protein_coding;locus_tag=azo0264
AM406670.1	EMBL	CDS	291680	292336	.	-	0	ID=cds262;Parent=gene267;Dbxref=EnsemblGenomes-Gn:azo0264,EnsemblGenomes-Tr:CAL92881,GOA:A1K226,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:A1K226,NCBI_GP:CAL92881.1;Name=CAL92881.1;Note=Transcriptional regulatory protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=qseB1;product=transcriptional regulatory protein;protein_id=CAL92881.1;transl_table=11
AM406670.1	EMBL	gene	292491	292763	.	+	.	ID=gene268;Name=azo0265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0265
AM406670.1	EMBL	CDS	292491	292763	.	+	0	ID=cds263;Parent=gene268;Dbxref=EnsemblGenomes-Gn:azo0265,EnsemblGenomes-Tr:CAL92882,InterPro:IPR025711,UniProtKB/TrEMBL:A1K227,NCBI_GP:CAL92882.1;Name=CAL92882.1;Note=Conserved hypothetical secreted protein. Homology to bd0091 of B. bacteriovorus of 52%25 (tremblnew|CAE77770(SRS)). no domains predicted. signal peptide. no TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92882.1;transl_table=11
AM406670.1	EMBL	gene	292777	293298	.	+	.	ID=gene269;Name=azo0266;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0266
AM406670.1	EMBL	CDS	292777	293298	.	+	0	ID=cds264;Parent=gene269;Dbxref=EnsemblGenomes-Gn:azo0266,EnsemblGenomes-Tr:CAL92883,GOA:A1K228,InterPro:IPR016174,UniProtKB/TrEMBL:A1K228,NCBI_GP:CAL92883.1;Name=CAL92883.1;Note=Conserved hypothetical cytochrome b561 family protein. Homology to rsc2354 of R. solanacearum of 43%25 (trembl|Q8XWW6). Involved in electron transfer from hydrogen to oxygene. Pfam: Nickel-dependen hydrogenase b-type cytochrome no signal peptide probable 4 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical cytochrome b561 family protein;protein_id=CAL92883.1;transl_table=11
AM406670.1	EMBL	gene	293415	294473	.	+	.	ID=gene270;Name=czcB;gbkey=Gene;gene=czcB;gene_biotype=protein_coding;locus_tag=azo0267
AM406670.1	EMBL	CDS	293415	294473	.	+	0	ID=cds265;Parent=gene270;Dbxref=EnsemblGenomes-Gn:azo0267,EnsemblGenomes-Tr:CAL92884,GOA:A1K229,InterPro:IPR006143,UniProtKB/TrEMBL:A1K229,NCBI_GP:CAL92884.1;Name=CAL92884.1;Note=Putative membrane fusion protein. Homology to cnrb of A. eutrophus of 30%25 (pir|F47056). Proteins of the MFP family function as auxiliary proteins or 'adaptors'%2Cconnecting a primary porter in the cytoplasmic membrane of a Gram-negative bacterium with an outer membrane factor protein that serves a porin or channel function in the outer membrane. In A. eutrophus is this protein involved in cobalt and nickel resistance. No domains predicted. No signal peptide No TMHs%3B~Family membership;gbkey=CDS;gene=czcB;product=putative membrane fusion protein;protein_id=CAL92884.1;transl_table=11
AM406670.1	EMBL	gene	294470	297574	.	+	.	ID=gene271;Name=czcA2;gbkey=Gene;gene=czcA2;gene_biotype=protein_coding;locus_tag=azo0268
AM406670.1	EMBL	CDS	294470	297574	.	+	0	ID=cds266;Parent=gene271;Dbxref=EnsemblGenomes-Gn:azo0268,EnsemblGenomes-Tr:CAL92885,GOA:A1K230,InterPro:IPR001036,InterPro:IPR004763,InterPro:IPR027463,UniProtKB/TrEMBL:A1K230,NCBI_GP:CAL92885.1;Name=CAL92885.1;Note=Cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA). In A.eutrophus has a low cation transport activity for cobalt%2C it is essential for the expression of cobalt%2C zinc%2C and cadmium resistance.Czca and Czcb together would act in zinc efflux nearly as effectively as the complete czc efflux system (czcABC).Belongs to the acrb/acrd/acrf family. 41%25 similarity to the A.eutrophus CzcA protein. SWISSPROT:CZCA_ALCEU:P13511 InterPro: Heavy metal efflux pump CzcA. InterPro:IPR001036%3B Acrflvin_res.IPR004763: CzcA. Pfam:PF00873%3B ACR_tran%3B 1. InterPro:TIGR00914:Heavy metal efflux pump CzcA InterPro:PF00873:Acriflavin resistance protein Signal peptide: present.%3B~High confidence in function and specificity;gbkey=CDS;gene=czcA2;product=putative cation efflux system protein;protein_id=CAL92885.1;transl_table=11
AM406670.1	EMBL	gene	297571	297885	.	+	.	ID=gene272;Name=azo0269;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0269
AM406670.1	EMBL	CDS	297571	297885	.	+	0	ID=cds267;Parent=gene272;Dbxref=EnsemblGenomes-Gn:azo0269,EnsemblGenomes-Tr:CAL92886,InterPro:IPR015867,InterPro:IPR021634,UniProtKB/TrEMBL:A1K231,NCBI_GP:CAL92886.1;Name=CAL92886.1;Note=Conserved hypothetical protein.30%25 identical to TrEMBL%3B Q89MS9. Signal Peptide present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92886.1;transl_table=11
AM406670.1	EMBL	gene	297885	299159	.	+	.	ID=gene273;Name=azo0270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0270
AM406670.1	EMBL	CDS	297885	299159	.	+	0	ID=cds268;Parent=gene273;Dbxref=EnsemblGenomes-Gn:azo0270,EnsemblGenomes-Tr:CAL92887,GOA:A1K232,InterPro:IPR003423,UniProtKB/TrEMBL:A1K232,NCBI_GP:CAL92887.1;Name=CAL92887.1;Note=Hypothetical secreted protein. Homology to cnfc of Ralstonia sp CH34 of 28%25 (tremblnew|CAB82451(SRS). Pfam: outer membrane protein. Interpro: Type I antifreeze protein (IPR000104). singal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL92887.1;transl_table=11
AM406670.1	EMBL	gene	299301	300887	.	-	.	ID=gene274;Name=azo0271;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0271
AM406670.1	EMBL	CDS	299301	300887	.	-	0	ID=cds269;Parent=gene274;Dbxref=EnsemblGenomes-Gn:azo0271,EnsemblGenomes-Tr:CAL92888,GOA:A1K233,InterPro:IPR006158,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR023404,InterPro:IPR023970,UniProtKB/TrEMBL:A1K233,NCBI_GP:CAL92888.1;Name=CAL92888.1;Note=Conserved hypothetical protein. Homology to Daro03000974 of Dechloromonas aromatica of 68%25 (gi|46140980|ref|ZP_00152750.2|(NBCI ENTREZ)). Pfam: Elongator protein 3%2C MiaB family%2C Radical SAM. This superfamily contains MoaA%2C NifB%2C PqqE%2C coproporphyrinogen III oxidase%2C biotin synthase and MiaB families%2C and includes a representative in the eukaryotic elongator subunit%2C Elp-3. Some members of the family are methyltransferases%3B Pfam: B12 binding domain. This domain binds to B12 (adenosylcobamide)%2C it is found in several enzymes%2C such as glutamate mutase Q05488%2C methionine synthase Q99707 and methylmalonyl-CoA mutase. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92888.1;transl_table=11
AM406670.1	EMBL	gene	301090	301368	.	-	.	ID=gene275;Name=azo0272;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0272
AM406670.1	EMBL	CDS	301090	301368	.	-	0	ID=cds270;Parent=gene275;Dbxref=EnsemblGenomes-Gn:azo0272,EnsemblGenomes-Tr:CAL92889,UniProtKB/TrEMBL:A1K234,NCBI_GP:CAL92889.1;Name=CAL92889.1;Note=Hypothetical protein. No homology to protein of similar size in the data bank. No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=hypothetical protein;protein_id=CAL92889.1;transl_table=11
AM406670.1	EMBL	gene	301346	301972	.	-	.	ID=gene276;Name=sigW;gbkey=Gene;gene=sigW;gene_biotype=protein_coding;locus_tag=azo0273
AM406670.1	EMBL	CDS	301346	301972	.	-	0	ID=cds271;Parent=gene276;Dbxref=EnsemblGenomes-Gn:azo0273,EnsemblGenomes-Tr:CAL92890,GOA:A1K235,InterPro:IPR007627,InterPro:IPR011991,InterPro:IPR013249,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:A1K235,NCBI_GP:CAL92890.1;Name=CAL92890.1;Note=Putative RNA polymerase sigma factor%2C Myxococcus xanthus carQ%3B Alcaligenes eutrophus plasmid pMOL28-encoded cnrH%3B Escherichia coli fecI%3B Pseudomonas syringae hrpL%3B rpoE from Escherichia coli%2C Salmonella typhimurium and Haemophilus influenzae%3B Streptomyces coelicolor sigE%3B and Bacillus subtilis sigma factors sigV%2C sigX%2C sigY and sigZ.%3B~High confidence in function and specificity;gbkey=CDS;gene=sigW;product=putative ECF-family RNA polymerase sigma factor;protein_id=CAL92890.1;transl_table=11
AM406670.1	EMBL	gene	301969	302409	.	-	.	ID=gene277;Name=azo0274;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0274
AM406670.1	EMBL	CDS	301969	302409	.	-	0	ID=cds272;Parent=gene277;Dbxref=EnsemblGenomes-Gn:azo0274,EnsemblGenomes-Tr:CAL92891,InterPro:IPR021455,UniProtKB/TrEMBL:A1K236,NCBI_GP:CAL92891.1;Name=CAL92891.1;Note=Conserved hypothetical secreted protein. Homology to XCC0845 of X. campestris of 30%25 (trembl|Q8PC89). No domains predicted. Signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92891.1;transl_table=11
AM406670.1	EMBL	gene	302583	302924	.	+	.	ID=gene278;Name=azo0275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0275
AM406670.1	EMBL	CDS	302583	302924	.	+	0	ID=cds273;Parent=gene278;Dbxref=EnsemblGenomes-Gn:azo0275,EnsemblGenomes-Tr:CAL92892,UniProtKB/TrEMBL:A1K237,NCBI_GP:CAL92892.1;Name=CAL92892.1;Note=Conserved hypothetical secreted protein. Homology to CC3220 of Caulobacter crescentus of 34%25 (trembl|Q9A3I4(SRS)) No domains predicted. Signal Peptide present. NO TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92892.1;transl_table=11
AM406670.1	EMBL	gene	303050	303640	.	+	.	ID=gene279;Name=azo0276;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0276
AM406670.1	EMBL	CDS	303050	303640	.	+	0	ID=cds274;Parent=gene279;Dbxref=EnsemblGenomes-Gn:azo0276,EnsemblGenomes-Tr:CAL92893,UniProtKB/TrEMBL:A1K238,NCBI_GP:CAL92893.1;Name=CAL92893.1;Note=Putative Hypothetical protein. No Good homologous hits in the DB. No domains/features/signal peptide or motifs present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL92893.1;transl_table=11
AM406670.1	EMBL	gene	303727	304134	.	+	.	ID=gene280;Name=azo0277;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0277
AM406670.1	EMBL	CDS	303727	304134	.	+	0	ID=cds275;Parent=gene280;Dbxref=EnsemblGenomes-Gn:azo0277,EnsemblGenomes-Tr:CAL92894,UniProtKB/TrEMBL:A1K239,NCBI_GP:CAL92894.1;Name=CAL92894.1;Note=Hypothetical protein. Weak Homology. 39%25 identity to TrEMBL%3BQ8EWG7. No domains%2C repeats%2C motifs or features present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL92894.1;transl_table=11
AM406670.1	EMBL	gene	304110	304865	.	-	.	ID=gene281;Name=azo0278;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0278
AM406670.1	EMBL	CDS	304110	304865	.	-	0	ID=cds276;Parent=gene281;Dbxref=EnsemblGenomes-Gn:azo0278,EnsemblGenomes-Tr:CAL92895,UniProtKB/TrEMBL:A1K240,NCBI_GP:CAL92895.1;Name=CAL92895.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide. 1 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL92895.1;transl_table=11
AM406670.1	EMBL	gene	305070	305825	.	+	.	ID=gene282;Name=azo0279;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0279
AM406670.1	EMBL	CDS	305070	305825	.	+	0	ID=cds277;Parent=gene282;Dbxref=EnsemblGenomes-Gn:azo0279,EnsemblGenomes-Tr:CAL92896,InterPro:IPR021783,UniProtKB/TrEMBL:A1K241,NCBI_GP:CAL92896.1;Name=CAL92896.1;Note=Conserved hypothetical protein. Homology to BB1132 of B.bronchiseptica of 42%25 (tremble:Q7WNA8). No domains predicted. No Signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92896.1;transl_table=11
AM406670.1	EMBL	gene	305877	308081	.	+	.	ID=gene283;Name=azo0280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0280
AM406670.1	EMBL	CDS	305877	308081	.	+	0	ID=cds278;Parent=gene283;Dbxref=EnsemblGenomes-Gn:azo0280,EnsemblGenomes-Tr:CAL92897,InterPro:IPR008520,UniProtKB/TrEMBL:A1K242,NCBI_GP:CAL92897.1;Name=CAL92897.1;Note=Conserved hypothetical membrane protein. Homology to rs03062 of R. solanacearum of 48%25 (tremble:Q8XQ05) no domains predicted signal peptide 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92897.1;transl_table=11
AM406670.1	EMBL	gene	308084	308728	.	+	.	ID=gene284;Name=azo0281;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0281
AM406670.1	EMBL	CDS	308084	308728	.	+	0	ID=cds279;Parent=gene284;Dbxref=EnsemblGenomes-Gn:azo0281,EnsemblGenomes-Tr:CAL92898,InterPro:IPR006665,UniProtKB/TrEMBL:A1K243,NCBI_GP:CAL92898.1;Name=CAL92898.1;Note=Outer membrane protein A precursor. Homology with hypothetical transmembrane protein and probable outer membrane protein of 56%25 as well as with motB (flagellar motor protein B) from amino acid 84 of 34%25. Pfam: OmpA no signal peptide probable 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical outer membrane protein;protein_id=CAL92898.1;transl_table=11
AM406670.1	EMBL	gene	308721	309476	.	+	.	ID=gene285;Name=azo0282;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0282
AM406670.1	EMBL	CDS	308721	309476	.	+	0	ID=cds280;Parent=gene285;Dbxref=EnsemblGenomes-Gn:azo0282,EnsemblGenomes-Tr:CAL92899,InterPro:IPR021549,UniProtKB/TrEMBL:A1K244,NCBI_GP:CAL92899.1;Name=CAL92899.1;Note=Conserved hypothetical protein. Homology to RS03060 of R.solanacearum of 35%25 (tremble:Q8XQ03) No domains predicted. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92899.1;transl_table=11
AM406670.1	EMBL	gene	309473	310132	.	-	.	ID=gene286;Name=azo0283;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0283
AM406670.1	EMBL	CDS	309473	310132	.	-	0	ID=cds281;Parent=gene286;Dbxref=EnsemblGenomes-Gn:azo0283,EnsemblGenomes-Tr:CAL92900,UniProtKB/TrEMBL:A1K245,NCBI_GP:CAL92900.1;Name=CAL92900.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no TMHs. no signal peptide;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL92900.1;transl_table=11
AM406670.1	EMBL	gene	310129	311193	.	-	.	ID=gene287;Name=azo0284;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0284
AM406670.1	EMBL	CDS	310129	311193	.	-	0	ID=cds282;Parent=gene287;Dbxref=EnsemblGenomes-Gn:azo0284,EnsemblGenomes-Tr:CAL92901,GOA:A1K246,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR016038,InterPro:IPR016039,UniProtKB/TrEMBL:A1K246,NCBI_GP:CAL92901.1;Name=CAL92901.1;Note=Pfam (PF02801): Beta-ketoacyl synthase%2C C-terminal domain. Pfam (PF00109): Beta-ketoacyl synthase%2C N-terminal domain.%3B~Function unclear;gbkey=CDS;product=putative Beta-ketoacyl synthase family protein;protein_id=CAL92901.1;transl_table=11
AM406670.1	EMBL	gene	311190	311462	.	-	.	ID=gene288;Name=azo0285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0285
AM406670.1	EMBL	CDS	311190	311462	.	-	0	ID=cds283;Parent=gene288;Dbxref=EnsemblGenomes-Gn:azo0285,EnsemblGenomes-Tr:CAL92902,InterPro:IPR009081,UniProtKB/TrEMBL:A1K247,NCBI_GP:CAL92902.1;Name=CAL92902.1;Note=Conserved hypothetical acyl carrier protein. Homology to psptO5093 of P. syringae of 44%25 (trembl|Q87V48). Interpro: Phosphopanteteine-binding (IPR00613). Pfam: Phosphopantetheine attachment site (PF00550) Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. Tigrfam: acyl_carrier: acyl carrier protein. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical acyl carrier protein;protein_id=CAL92902.1;transl_table=11
AM406670.1	EMBL	gene	311480	312718	.	-	.	ID=gene289;Name=azo0286;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0286
AM406670.1	EMBL	CDS	311480	312718	.	-	0	ID=cds284;Parent=gene289;Dbxref=EnsemblGenomes-Gn:azo0286,EnsemblGenomes-Tr:CAL92903,UniProtKB/TrEMBL:A1K248,NCBI_GP:CAL92903.1;Name=CAL92903.1;Note=Similar to TREMBL:Q7NFQ1 (27%25 identity)%3B TREMBL:Q97E48 (20%25 identity)%3B TREMBL:Q8FWI9 (21%25 identity). TMHMM predicting six transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear;gbkey=CDS;product=putative ABC transporter permease;protein_id=CAL92903.1;transl_table=11
AM406670.1	EMBL	gene	312733	313155	.	-	.	ID=gene290;Name=azo0287;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0287
AM406670.1	EMBL	CDS	312733	313155	.	-	0	ID=cds285;Parent=gene290;Dbxref=EnsemblGenomes-Gn:azo0287,EnsemblGenomes-Tr:CAL92904,GOA:A1K249,InterPro:IPR002716,InterPro:IPR022907,InterPro:IPR029060,UniProtKB/TrEMBL:A1K249,NCBI_GP:CAL92904.1;Name=CAL92904.1;Note=Probable DNA mismatch repair protein mutS. TREMBL:Q92SQ4:42%25 identity%2C 55%25 similarity. InterPro:IPR002716%3B PIN. Pfam: PF01850%3B PIN Absence of signal peptide Absence of transmembrane helices L17: ribosomal protein L17%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92904.1;transl_table=11
AM406670.1	EMBL	gene	313152	313379	.	-	.	ID=gene291;Name=azo0288;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0288
AM406670.1	EMBL	CDS	313152	313379	.	-	0	ID=cds286;Parent=gene291;Dbxref=EnsemblGenomes-Gn:azo0288,EnsemblGenomes-Tr:CAL92905,InterPro:IPR006442,UniProtKB/TrEMBL:A1K250,NCBI_GP:CAL92905.1;Name=CAL92905.1;Note=no significant homologies;gbkey=CDS;product=hypothetical protein;protein_id=CAL92905.1;transl_table=11
AM406670.1	EMBL	gene	313482	314405	.	-	.	ID=gene292;Name=azo0289;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0289
AM406670.1	EMBL	CDS	313482	314405	.	-	0	ID=cds287;Parent=gene292;Dbxref=EnsemblGenomes-Gn:azo0289,EnsemblGenomes-Tr:CAL92906,GOA:A1K251,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1K251,NCBI_GP:CAL92906.1;Name=CAL92906.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q8R788 (35%25 identity)%3B TREMBL:Q81S77 (37%25 identity). InterPro (IPR003439): ABC transporter. InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Family membership;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL92906.1;transl_table=11
AM406670.1	EMBL	gene	314413	315417	.	-	.	ID=gene293;Name=azo0290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0290
AM406670.1	EMBL	CDS	314413	315417	.	-	0	ID=cds288;Parent=gene293;Dbxref=EnsemblGenomes-Gn:azo0290,EnsemblGenomes-Tr:CAL92907,InterPro:IPR026935,UniProtKB/TrEMBL:A1K252,NCBI_GP:CAL92907.1;Name=CAL92907.1;Note=Conserved hypothetical protein. Homology to Daro03001929 of Dechloromonas aromatica of 68%25 (gi|53730629|ref|ZP_00348881.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92907.1;transl_table=11
AM406670.1	EMBL	gene	315418	315813	.	-	.	ID=gene294;Name=azo0291;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0291
AM406670.1	EMBL	CDS	315418	315813	.	-	0	ID=cds289;Parent=gene294;Dbxref=EnsemblGenomes-Gn:azo0291,EnsemblGenomes-Tr:CAL92908,UniProtKB/TrEMBL:A1K253,NCBI_GP:CAL92908.1;Name=CAL92908.1;Note=Conserved hypothetical protein. Homology to Daro03001928 of Dechloromonas aromatica of 59%25 (gi|41724574|ref|ZP_00151411.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92908.1;transl_table=11
AM406670.1	EMBL	gene	315826	316980	.	-	.	ID=gene295;Name=darB;gbkey=Gene;gene=darB;gene_biotype=protein_coding;locus_tag=azo0292
AM406670.1	EMBL	CDS	315826	316980	.	-	0	ID=cds290;Parent=gene295;Dbxref=EnsemblGenomes-Gn:azo0292,EnsemblGenomes-Tr:CAL92909,GOA:A1K254,InterPro:IPR013747,InterPro:IPR016038,InterPro:IPR016039,UniProtKB/TrEMBL:A1K254,NCBI_GP:CAL92909.1;Name=CAL92909.1;Note=3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta- ketoacyl-ACP synthase III) (KAS III). Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and/or straight-chain of fatty acids (By similarity). Entry name trembl|Q84H29(SRS) Identities %3D 238/384 (61%25) Prediction: Non-secretory protein Signal peptide probability: 0.0 Number of predicted TMHs: 0 Pfam:- Beta-ketoacyl synthase%2C N-terminal do Accession number:-Pf00109%3B~High confidence in function and specificity;gbkey=CDS;gene=darB;product=probable 3-oxoacyl-[acyl-carrier-protein] synthase;protein_id=CAL92909.1;transl_table=11
AM406670.1	EMBL	gene	316973	317914	.	-	.	ID=gene296;Name=darA;gbkey=Gene;gene=darA;gene_biotype=protein_coding;locus_tag=azo0293
AM406670.1	EMBL	CDS	316973	317914	.	-	0	ID=cds291;Parent=gene296;Dbxref=EnsemblGenomes-Gn:azo0293,EnsemblGenomes-Tr:CAL92910,InterPro:IPR029039,UniProtKB/TrEMBL:A1K255,NCBI_GP:CAL92910.1;Name=CAL92910.1;Note=Probable dialkylrecorsinol condensing enzyme. Homology to darA of P. aurantiaca of 56%25 (trembl|Q84H30(SRS)) no domains predicted no signal peptide 1 TMHs%3B~Family membership;gbkey=CDS;gene=darA;product=probable dialkylrecorsinol condensing enzyme;protein_id=CAL92910.1;transl_table=11
AM406670.1	EMBL	gene	317928	319742	.	-	.	ID=gene297;Name=azo0294;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0294
AM406670.1	EMBL	CDS	317928	319742	.	-	0	ID=cds292;Parent=gene297;Dbxref=EnsemblGenomes-Gn:azo0294,EnsemblGenomes-Tr:CAL92911,InterPro:IPR001466,InterPro:IPR012338,UniProtKB/TrEMBL:A1K256,NCBI_GP:CAL92911.1;Name=CAL92911.1;Note=INVOLVED IN CELL WALL BIOSYNTHESIS AND MAY ALSO ACT AS A SENSOR OF EXTERNAL PENICILLINS%2C TREMBL:Q7UMP8 (30%25 identity)%3B TREMBL:Q988N4 (27%25 identity).%3B~Family membership;gbkey=CDS;product=putative penicillin-binding protein;protein_id=CAL92911.1;transl_table=11
AM406670.1	EMBL	gene	320022	320456	.	+	.	ID=gene298;Name=azo0295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0295
AM406670.1	EMBL	CDS	320022	320456	.	+	0	ID=cds293;Parent=gene298;Dbxref=EnsemblGenomes-Gn:azo0295,EnsemblGenomes-Tr:CAL92912,InterPro:IPR007791,InterPro:IPR029024,UniProtKB/TrEMBL:A1K257,NCBI_GP:CAL92912.1;Name=CAL92912.1;Note=Conserved hypothetical protein. Homology to CV2374 of C.violaceum of 31%25 (tremble:Q7NVG9). No domains predicted. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92912.1;transl_table=11
AM406670.1	EMBL	gene	320512	321492	.	-	.	ID=gene299;Name=azo0296;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0296
AM406670.1	EMBL	CDS	320512	321492	.	-	0	ID=cds294;Parent=gene299;Dbxref=EnsemblGenomes-Gn:azo0296,EnsemblGenomes-Tr:CAL92913,GOA:A1K258,InterPro:IPR001279,UniProtKB/TrEMBL:A1K258,NCBI_GP:CAL92913.1;Name=CAL92913.1;Note=InterPro:IPR001279- Metallo-beta-lactamase superfamily%2Cglyoxalase II family%2C that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid. TREMBL:Q7WEK1-55%25 Identity. Pfam-Presence of phosphoribosyltransferase%2C tissue factor%2C and GMP reductaseC like domains Signal P predicting signal peptide and TMHMM predicting transmembrane helices. ccoP: cytochrome c oxidase cbb3-type s%3B~High confidence in function and specificity;gbkey=CDS;product=probable metallo-beta-lactamase superfamily protein;protein_id=CAL92913.1;transl_table=11
AM406670.1	EMBL	gene	321614	321958	.	-	.	ID=gene300;Name=azo0297;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0297
AM406670.1	EMBL	CDS	321614	321958	.	-	0	ID=cds295;Parent=gene300;Dbxref=EnsemblGenomes-Gn:azo0297,EnsemblGenomes-Tr:CAL92914,InterPro:IPR011051,InterPro:IPR013096,InterPro:IPR014710,UniProtKB/TrEMBL:A1K259,NCBI_GP:CAL92914.1;Name=CAL92914.1;Note=Conserved hypothetical protein%2C 66%25 similarity to TrEMBL%3B Q6NA86. Signal peptide present. No TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92914.1;transl_table=11
AM406670.1	EMBL	gene	321964	322572	.	-	.	ID=gene301;Name=paaY;gbkey=Gene;gene=paaY;gene_biotype=protein_coding;locus_tag=azo0298
AM406670.1	EMBL	CDS	321964	322572	.	-	0	ID=cds296;Parent=gene301;Dbxref=EnsemblGenomes-Gn:azo0298,EnsemblGenomes-Tr:CAL92915,InterPro:IPR001451,InterPro:IPR011004,InterPro:IPR011974,UniProtKB/TrEMBL:A1K260,NCBI_GP:CAL92915.1;Name=CAL92915.1;Note=pathway:carnitine metabolism (conversion of carnitine to gamma-butyrobetaine). TREMBL:Q9F9V3: 71%25 identity%2C 83%25 similarity similarity:belongs to the transferase hexapeptide repeat family Carnitine operon protein caiE. InterPro:IPR001451%3B Hexapep_transf. Pfam:PF00132%3B Hexapep InterPro: Bacterial transferase hexapeptide repeat TIGR00094: conserved hypothetical protein%3B~High confidence in function and specificity;gbkey=CDS;gene=paaY;product=probable phenyl acetic acid degradation protein;protein_id=CAL92915.1;transl_table=11
AM406670.1	EMBL	gene	322766	324430	.	-	.	ID=gene302;Name=paaZ;gbkey=Gene;gene=paaZ;gene_biotype=protein_coding;locus_tag=azo0299
AM406670.1	EMBL	CDS	322766	324430	.	-	0	ID=cds297;Parent=gene302;Dbxref=EnsemblGenomes-Gn:azo0299,EnsemblGenomes-Tr:CAL92916,GOA:A1K261,InterPro:IPR011975,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,UniProtKB/TrEMBL:A1K261,NCBI_GP:CAL92916.1;Name=CAL92916.1;Note=Conserved hypothetical dehydrogenase. Homology to paaZ of A. evansii of 83%25 (trembl|Q9F9V2). Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=paaZ;product=conserved hypothetical dehydrogenase;protein_id=CAL92916.1;transl_table=11
AM406670.1	EMBL	gene	324719	325522	.	+	.	ID=gene303;Name=paaG1;gbkey=Gene;gene=paaG1;gene_biotype=protein_coding;locus_tag=azo0300
AM406670.1	EMBL	CDS	324719	325522	.	+	0	ID=cds298;Parent=gene303;Dbxref=EnsemblGenomes-Gn:azo0300,EnsemblGenomes-Tr:CAL92917,GOA:A1K262,InterPro:IPR001753,InterPro:IPR011968,InterPro:IPR014748,InterPro:IPR018376,InterPro:IPR029045,UniProtKB/TrEMBL:A1K262,NCBI_GP:CAL92917.1;Name=CAL92917.1;Note=Probable enoyl-CoA hydratase. Homology to paaG of E. coli of 60%25 (sprot|PAAG_ECOLI(SRS) COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). Activity:- (3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H2O. Interpro: Enoyl-CoA hydratase/isomerase (IPR001753) Pfam: Enoyl-CoA hydratase/isomerase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=paaG1;product=probable enoyl-CoA hydratase;protein_id=CAL92917.1;transl_table=11
AM406670.1	EMBL	gene	325526	327073	.	+	.	ID=gene304;Name=paaH1;gbkey=Gene;gene=paaH1;gene_biotype=protein_coding;locus_tag=azo0301
AM406670.1	EMBL	CDS	325526	327073	.	+	0	ID=cds299;Parent=gene304;Dbxref=EnsemblGenomes-Gn:azo0301,EnsemblGenomes-Tr:CAL92918,GOA:A1K263,InterPro:IPR006108,InterPro:IPR006176,InterPro:IPR008927,InterPro:IPR011967,InterPro:IPR013328,InterPro:IPR016040,UniProtKB/TrEMBL:A1K263,NCBI_GP:CAL92918.1;Name=CAL92918.1;Note=Activity:-3-acetoacetyl-CoA + NADPH %3D (S)-3-hydroxybutanoyl-CoA + NADP+ Entry name TREMBL:Q9F9V1 InterPro IPR006108%3B 3HCDH_C. IPR006176%3B 3HCDH_N. IPR008927%3B 6DGDH_C_like. IPR002110%3B ANK. IPR000205%3B NAD_BS. Pfam PF00725%3B 3HCDH%3B 2. PF02737%3B 3HCDH_N%3B 1. Identities %3D 344/510 (67%25) Prediction: Signal peptide Signal peptide probability: 0.660 Number of predicted TMHs: 1%3B~High confidence in function and specificity;gbkey=CDS;gene=paaH1;product=probable 3-hydroxybutyryl-CoA dehydrogenase;protein_id=CAL92918.1;transl_table=11
AM406670.1	EMBL	gene	327066	327536	.	+	.	ID=gene305;Name=paaI;gbkey=Gene;gene=paaI;gene_biotype=protein_coding;locus_tag=azo0302
AM406670.1	EMBL	CDS	327066	327536	.	+	0	ID=cds300;Parent=gene305;Dbxref=EnsemblGenomes-Gn:azo0302,EnsemblGenomes-Tr:CAL92919,GOA:A1K264,InterPro:IPR003736,InterPro:IPR006683,InterPro:IPR011973,InterPro:IPR029069,UniProtKB/TrEMBL:A1K264,NCBI_GP:CAL92919.1;Name=CAL92919.1;Note=Phenylacetic acid aerobic catabolism. Similar to TREMBL:Q9F9V0 (74%25 identity)%3B SWISSPROT:P76084 (48%25 identity). InterPro (IPR003736): Phenylacetic acid degradation-related protein. Pfam (DUF157): Uncharacterized protein PaaI%2C COG2050%3B~High confidence in function and specificity;gbkey=CDS;gene=paaI;product=phenylacetic acid degradation protein PaaI;protein_id=CAL92919.1;transl_table=11
AM406670.1	EMBL	gene	327612	328934	.	+	.	ID=gene306;Name=paaK;gbkey=Gene;gene=paaK;gene_biotype=protein_coding;locus_tag=azo0303
AM406670.1	EMBL	CDS	327612	328934	.	+	0	ID=cds301;Parent=gene306;Dbxref=EnsemblGenomes-Gn:azo0303,EnsemblGenomes-Tr:CAL92920,GOA:A1K265,InterPro:IPR000873,InterPro:IPR011880,InterPro:IPR028154,UniProtKB/TrEMBL:A1K265,NCBI_GP:CAL92920.1;Name=CAL92920.1;Note=Phenylacetate-coenzyme A ligase (EC 6.2.1.30) (Phenylacetyl-CoA ligase) (PA-CoA ligase). catalyzes the activation of phenylacetic acid to phenylacetyl-coA%3B~High confidence in function and specificity;gbkey=CDS;gene=paaK;product=Phenylacetate--CoA ligase.;protein_id=CAL92920.1;transl_table=11
AM406670.1	EMBL	gene	328992	329987	.	+	.	ID=gene307;Name=paaA;gbkey=Gene;gene=paaA;gene_biotype=protein_coding;locus_tag=azo0304
AM406670.1	EMBL	CDS	328992	329987	.	+	0	ID=cds302;Parent=gene307;Dbxref=EnsemblGenomes-Gn:azo0304,EnsemblGenomes-Tr:CAL92921,InterPro:IPR007814,InterPro:IPR009078,InterPro:IPR011881,InterPro:IPR012347,UniProtKB/TrEMBL:A1K266,NCBI_GP:CAL92921.1;Name=CAL92921.1;Note=Phenylacetic acid degradation protein [paaA]%2C86%25 identity(91%25 similarity) to TrEMBL%3BQ9F9U9. 72%25 identity to TrEMBL%3BQ7WGX6%2C Q8XS77 Has PF05138%2C Phenylacetic acid catabolic protein%3BIPR007814%2C PaaA_PaaC%3B This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex. No Signal Peptide or TMH present.%3B~High confidence in function and specificity;gbkey=CDS;gene=paaA;product=phenylacetic acid degradation protein [paaA];protein_id=CAL92921.1;transl_table=11
AM406670.1	EMBL	gene	330089	330376	.	+	.	ID=gene308;Name=paaB;gbkey=Gene;gene=paaB;gene_biotype=protein_coding;locus_tag=azo0305
AM406670.1	EMBL	CDS	330089	330376	.	+	0	ID=cds303;Parent=gene308;Dbxref=EnsemblGenomes-Gn:azo0305,EnsemblGenomes-Tr:CAL92922,InterPro:IPR009359,UniProtKB/TrEMBL:A1K267,NCBI_GP:CAL92922.1;Name=CAL92922.1;Note=May be part of a multicomponent oxygenase involved in phenylacetyl-coa hydroxylation. Phenylacetic acid aerobic catabolism pathway%2C TREMBL:Q8XS76 (75%25 identity)%3B SWISSPROT:P76078 (61%25 identity).%3B~High confidence in function and specificity;gbkey=CDS;gene=paaB;product=phenylacetic acid degradation protein PaaB;protein_id=CAL92922.1;transl_table=11
AM406670.1	EMBL	gene	330388	331158	.	+	.	ID=gene309;Name=paaC;gbkey=Gene;gene=paaC;gene_biotype=protein_coding;locus_tag=azo0306
AM406670.1	EMBL	CDS	330388	331158	.	+	0	ID=cds304;Parent=gene309;Dbxref=EnsemblGenomes-Gn:azo0306,EnsemblGenomes-Tr:CAL92923,InterPro:IPR007814,InterPro:IPR009078,InterPro:IPR011882,InterPro:IPR012347,UniProtKB/TrEMBL:A1K268,NCBI_GP:CAL92923.1;Name=CAL92923.1;Note=Probable phenylacetic acid degradation protein PaaC. Homology to paaI of P. putida of 46%25 (trembl|O84983). Part of a catabolic pathway of phenylacetic acid. These proteins forms part of a dioxygenase complex. Interpro: Phenylacetic acid catabolic (IPR007814) Pfam: Phenylacetic acid catabolic protein (PF05138) no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=paaC;product=probable phenylacetic acid degradation protein PaaC;protein_id=CAL92923.1;transl_table=11
AM406670.1	EMBL	gene	331218	331709	.	+	.	ID=gene310;Name=paaD;gbkey=Gene;gene=paaD;gene_biotype=protein_coding;locus_tag=azo0307
AM406670.1	EMBL	CDS	331218	331709	.	+	0	ID=cds305;Parent=gene310;Dbxref=EnsemblGenomes-Gn:azo0307,EnsemblGenomes-Tr:CAL92924,InterPro:IPR002744,InterPro:IPR011883,UniProtKB/TrEMBL:A1K269,NCBI_GP:CAL92924.1;Name=CAL92924.1;Note=Probable pheylacetic acid degradation protein PaaD. Homology to phaH of P. putida of 54%25 (trembl|Q88HS8) Interpro: Protein of unknown function DUF59 (IPR002744) Pfam: Domain of unknoen function DUF59 (PF01883). Domain of unknown function DUF59%3BIPR002744%3B This family includes prokaryotic proteins of unknown function. The family also includes PhaH O84984 from Pseudomonas putida. PhaH forms a complex with PhaF O84982%2C PhaG O84983 and PhaI O84985%2Cwhich hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid. So members of this family may all be components of ring hydroxylating complexes. no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=paaD;product=probable phenylacetic acid degradation protein PaaD;protein_id=CAL92924.1;transl_table=11
AM406670.1	EMBL	gene	331742	332809	.	+	.	ID=gene311;Name=paaE;gbkey=Gene;gene=paaE;gene_biotype=protein_coding;locus_tag=azo0308
AM406670.1	EMBL	CDS	331742	332809	.	+	0	ID=cds306;Parent=gene311;Dbxref=EnsemblGenomes-Gn:azo0308,EnsemblGenomes-Tr:CAL92925,GOA:A1K270,InterPro:IPR001041,InterPro:IPR001221,InterPro:IPR001433,InterPro:IPR008333,InterPro:IPR011884,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K270,NCBI_GP:CAL92925.1;Name=CAL92925.1;Note=Probable phenylacetic acid degradation NADH oxidoreductase paaE. Homology to paaE of E. coli of 50%25 (sprot|PAAE_ECOLI). Probable PART OF A MULTICOMPONENT OXYGENASE involved in aerobic degradation of phenylacetic acid. InterPro: Oxidoreductase FAD and NAD(P)-binding domain(IPR001433)%3B 2Fe-2S Ferredoxin (IPR006057)%3B Ferredoxin (IPR001041)%3B NADH: cytochrome b5 reductase (CBR) (IPR001834) Pfam: Oxidoreductase FAD-binding domain%3B Oxidoreductase NAD-binding domain%3B 2Fe-2S iorn-sulfur cluster binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=paaE;product=probable phenylacetic acid degradation NADH oxidoreductase PaaE;protein_id=CAL92925.1;transl_table=11
AM406670.1	EMBL	gene	332869	333513	.	+	.	ID=gene312;Name=paaR;gbkey=Gene;gene=paaR;gene_biotype=protein_coding;locus_tag=azo0309
AM406670.1	EMBL	CDS	332869	333513	.	+	0	ID=cds307;Parent=gene312;Dbxref=EnsemblGenomes-Gn:azo0309,EnsemblGenomes-Tr:CAL92926,GOA:A1K271,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:A1K271,NCBI_GP:CAL92926.1;Name=CAL92926.1;Note=Putative TetR family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;gene=paaR;product=putative TetR family transcriptional regulator;protein_id=CAL92926.1;transl_table=11
AM406670.1	EMBL	gene	333560	334762	.	+	.	ID=gene313;Name=paaJ1;gbkey=Gene;gene=paaJ1;gene_biotype=protein_coding;locus_tag=azo0310
AM406670.1	EMBL	CDS	333560	334762	.	+	0	ID=cds308;Parent=gene313;Dbxref=EnsemblGenomes-Gn:azo0310,EnsemblGenomes-Tr:CAL92927,GOA:A1K272,InterPro:IPR002155,InterPro:IPR012793,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR020610,InterPro:IPR020613,InterPro:IPR020615,InterPro:IPR020616,InterPro:IPR020617,UniProtKB/TrEMBL:A1K272,NCBI_GP:CAL92927.1;Name=CAL92927.1;Note=THIOLYTIC CLEAVAGE OF BETA-KETOADIPYL-COA TO SUCCINATE AND ACETYL-COA. Entry name:- TREMBL:Q84HH5 InterPro:- IPR002155%3B Thiolase. Pfam:- PF02803%3B Thiolase_C%3B 1. PF00108%3B Thiolase_N%3B 1. Identities %3D 298/398 (74%25) Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=paaJ1;product=probable beta-ketoadipyl CoA thiolase;protein_id=CAL92927.1;transl_table=11
AM406670.1	EMBL	gene	334888	336033	.	+	.	ID=gene314;Name=azo0311;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0311
AM406670.1	EMBL	CDS	334888	336033	.	+	0	ID=cds309;Parent=gene314;Dbxref=EnsemblGenomes-Gn:azo0311,EnsemblGenomes-Tr:CAL92928,GOA:A1K273,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1K273,NCBI_GP:CAL92928.1;Name=CAL92928.1;Note=ABC transporter substrate binding proteins count to the family of extracellular ligand binding proteins. It is a component of the high affinity amino acid transport system. Similar to trembl|Q8XU64 (71%25) and to sprot|LIVJ_ECOLI (16%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;product=probable ABC transporter substrate binding protein;protein_id=CAL92928.1;transl_table=11
AM406670.1	EMBL	gene	336157	337194	.	+	.	ID=gene315;Name=azo0312;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0312
AM406670.1	EMBL	CDS	336157	337194	.	+	0	ID=cds310;Parent=gene315;Dbxref=EnsemblGenomes-Gn:azo0312,EnsemblGenomes-Tr:CAL92929,GOA:A1K274,InterPro:IPR001851,UniProtKB/TrEMBL:A1K274,NCBI_GP:CAL92929.1;Name=CAL92929.1;Note=Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q7W5E8 (62%25)%2C to sprot|BRAD_PSEAE (25%25) and to sprot|LIVH_ECOLI (26%25). Pfam (PF02653): Branched-chain amino acid transport system / permease component TMHMM reporting nine Tmhelix.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease protein;protein_id=CAL92929.1;transl_table=11
AM406670.1	EMBL	gene	337260	339053	.	+	.	ID=gene316;Name=azo0313;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0313
AM406670.1	EMBL	CDS	337260	339053	.	+	0	ID=cds311;Parent=gene316;Dbxref=EnsemblGenomes-Gn:azo0313,EnsemblGenomes-Tr:CAL92930,GOA:A1K275,InterPro:IPR001851,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1K275,NCBI_GP:CAL92930.1;Name=CAL92930.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. The integral inner-membrane proteins translocate the substrate across the membrane. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XRX5 (54%25) and to trembl|Q8UFI6 (47%25). Pfam: ABC transporter Pfam (PF02653): Branched-chain amino acid transport system / permease component Smart : AAA ATPase SignalP reporting Signal peptide. TMHMM reporting nine Tmhelix.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter ATP-binding/permease protein;protein_id=CAL92930.1;transl_table=11
AM406670.1	EMBL	gene	339053	339814	.	+	.	ID=gene317;Name=azo0314;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0314
AM406670.1	EMBL	CDS	339053	339814	.	+	0	ID=cds312;Parent=gene317;Dbxref=EnsemblGenomes-Gn:azo0314,EnsemblGenomes-Tr:CAL92931,GOA:A1K276,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K276,NCBI_GP:CAL92931.1;Name=CAL92931.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XRX4 (68%25) and to trembl|Q7WCY5 (63%25). Smart: AAA ATPases%3B~Specificity unclear;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL92931.1;transl_table=11
AM406670.1	EMBL	gene	340402	340677	.	+	.	ID=gene318;Name=hupB;gbkey=Gene;gene=hupB;gene_biotype=protein_coding;locus_tag=azo0315
AM406670.1	EMBL	CDS	340402	340677	.	+	0	ID=cds313;Parent=gene318;Dbxref=EnsemblGenomes-Gn:azo0315,EnsemblGenomes-Tr:CAL92932,GOA:A1K277,InterPro:IPR000119,InterPro:IPR010992,InterPro:IPR020816,UniProtKB/TrEMBL:A1K277,NCBI_GP:CAL92932.1;Name=CAL92932.1;Note=DNA-binding protein HU (DNA-binding protein II) (HB). Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it and thus to prevent its denaturation under extreme environmental conditions. InterPro: Bacterial histone-like DNA-binding protein%3B~High confidence in function and specificity;gbkey=CDS;gene=hupB;product=DNA-binding protein HU (DNA-binding protein II);protein_id=CAL92932.1;transl_table=11
AM406670.1	EMBL	gene	341121	342464	.	+	.	ID=gene319;Name=rhlE1;gbkey=Gene;gene=rhlE1;gene_biotype=protein_coding;locus_tag=azo0316
AM406670.1	EMBL	CDS	341121	342464	.	+	0	ID=cds314;Parent=gene319;Dbxref=EnsemblGenomes-Gn:azo0316,EnsemblGenomes-Tr:CAL92933,GOA:A1K278,InterPro:IPR000629,InterPro:IPR001650,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR014014,InterPro:IPR027417,UniProtKB/TrEMBL:A1K278,NCBI_GP:CAL92933.1;Name=CAL92933.1;Note=ATP-dependent RNA helicase%3B~Family membership;gbkey=CDS;gene=rhlE1;product=putative ATP-dependent RNA helicase;protein_id=CAL92933.1;transl_table=11
AM406670.1	EMBL	gene	342549	343016	.	-	.	ID=gene320;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=azo0317
AM406670.1	EMBL	CDS	342549	343016	.	-	0	ID=cds315;Parent=gene320;Dbxref=EnsemblGenomes-Gn:azo0317,EnsemblGenomes-Tr:CAL92934,GOA:A1K279,InterPro:IPR006027,InterPro:IPR011605,NCBI_GP:CAL92934.1;Name=CAL92934.1;Note=NusB protein (N utilization substance protein B homolog) Involved in the transcription termination process (By similarity).Belongs to the nusB family 46%25 1 TIGR01951 nusB%3B 1%3B~High confidence in function and specificity;gbkey=CDS;gene=nusB;product=putative N utilization substance protein B;protein_id=CAL92934.1;transl_table=11
AM406670.1	EMBL	gene	343013	343483	.	-	.	ID=gene321;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=azo0318
AM406670.1	EMBL	CDS	343013	343483	.	-	0	ID=cds316;Parent=gene321;Dbxref=EnsemblGenomes-Gn:azo0318,EnsemblGenomes-Tr:CAL92935,GOA:A1K280,InterPro:IPR002180,NCBI_GP:CAL92935.1;Name=CAL92935.1;Note=67-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) (DMRL synthase) (Lumazine synthase) (Riboflavin synthase beta chain). Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1-D)- ribityl-amino-24(1H3H)-pyrimidinedione and L-34-dihydrohy-2- butanone-4-phosphate via 67-dimethyl-8-lumazine. The beta subunit catalyzes the condensation of 5-amino-6-(1-D)-ribityl-amino-24(1H3H)-pyrimidinedione with L-34-dihydrohy-2-butanone-4-phosphate yielding 67-dimethyl-8-lumazine (By similarity). ribH: riboflavin synthase beta subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=ribH;product=riboflavin synthase;protein_id=CAL92935.1;transl_table=11
AM406670.1	EMBL	gene	343535	344626	.	-	.	ID=gene322;Name=ribAB;gbkey=Gene;gene=ribAB;gene_biotype=protein_coding;locus_tag=azo0319
AM406670.1	EMBL	CDS	343535	344626	.	-	0	ID=cds317;Parent=gene322;Dbxref=EnsemblGenomes-Gn:azo0319,EnsemblGenomes-Tr:CAL92936,GOA:A1K281,InterPro:IPR000422,InterPro:IPR000926,InterPro:IPR016299,InterPro:IPR017945,UniProtKB/TrEMBL:A1K281,NCBI_GP:CAL92936.1;Name=CAL92936.1;Note=RibAB%3B riboflavin biosynthesis bifunctional protein: GTP cyclohydrolase II and 3%2C4-dihydroxy-2-butanone-4-phosphate synthase InterPro: 3%2C4-Dihydroxy-2-butanone 4-phosphate synthase ribB: 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=ribAB;product=GTP cyclohydrolase II;protein_id=CAL92936.1;transl_table=11
AM406670.1	EMBL	gene	344623	345237	.	-	.	ID=gene323;Name=ribE;gbkey=Gene;gene=ribE;gene_biotype=protein_coding;locus_tag=azo0320
AM406670.1	EMBL	CDS	344623	345237	.	-	0	ID=cds318;Parent=gene323;Dbxref=EnsemblGenomes-Gn:azo0320,EnsemblGenomes-Tr:CAL92937,GOA:A1K282,InterPro:IPR001783,InterPro:IPR017938,InterPro:IPR023366,InterPro:IPR026017,UniProtKB/TrEMBL:A1K282,NCBI_GP:CAL92937.1;Name=CAL92937.1;Note=Riboflavin synthase alpha chain (EC 2.5.1.9). Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1-D)- ribityl-amino-24(1H3H)-pyrimidinedione and L-34-dihydrohy-2- butanone-4-phosphate via 67-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 67-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1-D)-ribityl-amino-24(1H3H)- pyrimidinedione. ribE: riboflavin synthase alpha subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=ribE;product=riboflavin synthase;protein_id=CAL92937.1;transl_table=11
AM406670.1	EMBL	gene	345296	347116	.	-	.	ID=gene324;Name=cutA2;gbkey=Gene;gene=cutA2;gene_biotype=protein_coding;locus_tag=azo0321
AM406670.1	EMBL	CDS	345296	347116	.	-	0	ID=cds319;Parent=gene324;Dbxref=EnsemblGenomes-Gn:azo0321,EnsemblGenomes-Tr:CAL92938,GOA:A1K283,InterPro:IPR003834,InterPro:IPR012336,InterPro:IPR017937,InterPro:IPR022910,InterPro:IPR028250,UniProtKB/TrEMBL:A1K283,NCBI_GP:CAL92938.1;Name=CAL92938.1;Note=Putative Protein disulfide-isomerase (EC 5.3.4.1). Homology to dsbD of E. coli of 37%25 (sprot|DSBD_ECOLI). Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps (By similarity). Pfam: Cytochrom C biogenesis protein transporter signal peptide probable 8 TMHs%3B~Family membership;gbkey=CDS;gene=cutA2;product=putative protein disulfide-isomerase;protein_id=CAL92938.1;transl_table=11
AM406670.1	EMBL	gene	347169	347492	.	-	.	ID=gene325;Name=cutA1;gbkey=Gene;gene=cutA1;gene_biotype=protein_coding;locus_tag=azo0322
AM406670.1	EMBL	CDS	347169	347492	.	-	0	ID=cds320;Parent=gene325;Dbxref=EnsemblGenomes-Gn:azo0322,EnsemblGenomes-Tr:CAL92939,GOA:A1K284,InterPro:IPR004323,InterPro:IPR011322,UniProtKB/TrEMBL:A1K284,NCBI_GP:CAL92939.1;Name=CAL92939.1;Note=Periplasmic divalent cation tolerance protein .36%25 similarity to E.coli CutA1 protein involved in copper tolerance. InterPro:IPR004323%3B CutA1. Pfam:PF03091%3B CutA1%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=cutA1;product=periplasmic divalent cation tolerance protein;protein_id=CAL92939.1;transl_table=11
AM406670.1	EMBL	gene	347536	348780	.	-	.	ID=gene326;Name=naoA;gbkey=Gene;gene=naoA;gene_biotype=protein_coding;locus_tag=azo0323
AM406670.1	EMBL	CDS	347536	348780	.	-	0	ID=cds321;Parent=gene326;Dbxref=EnsemblGenomes-Gn:azo0323,EnsemblGenomes-Tr:CAL92940,GOA:A1K285,InterPro:IPR004136,InterPro:IPR013785,UniProtKB/TrEMBL:A1K285,NCBI_GP:CAL92940.1;Name=CAL92940.1;Note=TREMBL:Q7MBF3: 80%25 identity%2C 89%25 similarity InterPro:IPR004136%3B 2nprop_dioxygen. IPR003009%3B FMN_enzyme. Pfam: PF03060%3B NPD tim: triosephosphate isomerase Non-secretory protein with no signal peptide. TMHMM predicted no transmembrane helices.%3B~High confidence in function and specificity;gbkey=CDS;gene=naoA;product=2-nitropropane dioxygenase.;protein_id=CAL92940.1;transl_table=11
AM406670.1	EMBL	gene	348990	349301	.	+	.	ID=gene327;Name=azo0324;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0324
AM406670.1	EMBL	CDS	348990	349301	.	+	0	ID=cds322;Parent=gene327;Dbxref=EnsemblGenomes-Gn:azo0324,EnsemblGenomes-Tr:CAL92941,InterPro:IPR018961,UniProtKB/TrEMBL:A1K286,NCBI_GP:CAL92941.1;Name=CAL92941.1;Note=Conserved hypothetical protein. Homology to GSU0176 of G.sulfurreducens of 42%25 (tremble:Q74GR9) No domains predicted. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92941.1;transl_table=11
AM406670.1	EMBL	gene	349421	350749	.	+	.	ID=gene328;Name=azo0325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0325
AM406670.1	EMBL	CDS	349421	350749	.	+	0	ID=cds323;Parent=gene328;Dbxref=EnsemblGenomes-Gn:azo0325,EnsemblGenomes-Tr:CAL92942,GOA:A1K287,InterPro:IPR000951,InterPro:IPR001433,InterPro:IPR008333,InterPro:IPR013130,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K287,NCBI_GP:CAL92942.1;Name=CAL92942.1;Note=Putative flavocytochrome protein. 48%25 FAD_binding_6.IPR001433%3B Oxred_FAD/NAD(P). Pfam:PF00970%3B FAD_binding_6%3B 1.PF00175%3B NAD_binding_1%3B 1. TMhelix: 6. Siganl peptide: present.%3B~Function unclear;gbkey=CDS;product=putative flavocytochrome protein;protein_id=CAL92942.1;transl_table=11
AM406670.1	EMBL	gene	350997	351800	.	+	.	ID=gene329;Name=azo0326;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0326
AM406670.1	EMBL	CDS	350997	351800	.	+	0	ID=cds324;Parent=gene329;Dbxref=EnsemblGenomes-Gn:azo0326,EnsemblGenomes-Tr:CAL92943,InterPro:IPR021390,UniProtKB/TrEMBL:A1K288,NCBI_GP:CAL92943.1;Name=CAL92943.1;Note=conserved hypothetical protein. Homology to cv0811 of C. violaceum of 43%25 (trembl|Q7NPT0(SRS) no domains predicted no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92943.1;transl_table=11
AM406670.1	EMBL	gene	351835	352428	.	-	.	ID=gene330;Name=azo0327;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0327
AM406670.1	EMBL	CDS	351835	352428	.	-	0	ID=cds325;Parent=gene330;Dbxref=EnsemblGenomes-Gn:azo0327,EnsemblGenomes-Tr:CAL92944,GOA:A1K289,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:A1K289,NCBI_GP:CAL92944.1;Name=CAL92944.1;Note=Putative TetR family transcriptional regulator%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative TetR family transcriptional regulator;protein_id=CAL92944.1;transl_table=11
AM406670.1	EMBL	gene	352603	353745	.	+	.	ID=gene331;Name=livK1;gbkey=Gene;gene=livK1;gene_biotype=protein_coding;locus_tag=azo0328
AM406670.1	EMBL	CDS	352603	353745	.	+	0	ID=cds326;Parent=gene331;Dbxref=EnsemblGenomes-Gn:azo0328,EnsemblGenomes-Tr:CAL92945,GOA:A1K290,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1K290,NCBI_GP:CAL92945.1;Name=CAL92945.1;Note=In enteric bacteria such as E. coli and Salmonella typhimurium%2C periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar to sprot|LIVK_SALTY (23%25) and to trembl|Q8XUX2 (46%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=livK1;product=putative leucine-specific binding protein;protein_id=CAL92945.1;transl_table=11
AM406670.1	EMBL	gene	353800	354273	.	-	.	ID=gene332;Name=azo0329;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0329
AM406670.1	EMBL	CDS	353800	354273	.	-	0	ID=cds327;Parent=gene332;Dbxref=EnsemblGenomes-Gn:azo0329,EnsemblGenomes-Tr:CAL92946,InterPro:IPR011008,InterPro:IPR021708,UniProtKB/TrEMBL:A1K291,NCBI_GP:CAL92946.1;Name=CAL92946.1;Note=Conserved hypothetical protein. Homology to SCO5300 of Streptomyces coelicolor of 46%25 (tremble:Q9XAE9). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92946.1;transl_table=11
AM406670.1	EMBL	gene	354344	355339	.	-	.	ID=gene333;Name=blaA;gbkey=Gene;gene=blaA;gene_biotype=protein_coding;locus_tag=azo0330
AM406670.1	EMBL	CDS	354344	355339	.	-	0	ID=cds328;Parent=gene333;Dbxref=EnsemblGenomes-Gn:azo0330,EnsemblGenomes-Tr:CAL92947,GOA:A1K292,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K292,NCBI_GP:CAL92947.1;Name=CAL92947.1;Note=HTH-type transcriptional regulator blaA (Beta-lactamase regulatory protein blaA). Positive regulator of the expression of the gene (blab) for beta-lactamase. Similar to SWISSPROT: sprot|BLAA_PROVU (32%25 Proteus vulgaris%2C HTH-type transcriptional regulator BlaA) InterPro: IPR000847 HTH_LysR. IPR009058 Winged helix DNA-binding. Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2C lysR family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=blaA;product=probable transcriptional regulator%2C LysR family;protein_id=CAL92947.1;transl_table=11
AM406670.1	EMBL	gene	355556	356023	.	+	.	ID=gene334;Name=azo0331;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0331
AM406670.1	EMBL	CDS	355556	356023	.	+	0	ID=cds329;Parent=gene334;Dbxref=EnsemblGenomes-Gn:azo0331,EnsemblGenomes-Tr:CAL92948,InterPro:IPR012312,UniProtKB/TrEMBL:A1K293,NCBI_GP:CAL92948.1;Name=CAL92948.1;Note=Conserved hypothetical protein%2C 41%25 similarity to TrEMBL%3BQ88JC7. Has IPR005544 DUF_HHE:PF03794%3BDomain of Unknown function:This domain normally occurs as tandem repeats and is found in bacteria%2C yeast and plants. It contains two fully conserved histidines and one glutamate residue. Members of the family include DnrN%2C NorA and ScdA%2C which have been implicated in NO response and cell wall physiology. Has no Signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92948.1;transl_table=11
AM406670.1	EMBL	gene	356048	357376	.	-	.	ID=gene335;Name=azo0332;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0332
AM406670.1	EMBL	CDS	356048	357376	.	-	0	ID=cds330;Parent=gene335;Dbxref=EnsemblGenomes-Gn:azo0332,EnsemblGenomes-Tr:CAL92949,GOA:A1K294,InterPro:IPR002641,InterPro:IPR016035,UniProtKB/TrEMBL:A1K294,NCBI_GP:CAL92949.1;Name=CAL92949.1;Note=Hypothetical protein yqhO. This family consists of various patatin glycoproteins from the total soluble protein in potato tubers.Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase%2C catalysing the cleavage of fatty acids from membrane lipids SPROT:P54513: 23%25 identity%2C 33%25 similarity SubtiList: BG11703%3B yqhO. InterPro:IPR002641%3B Patatin. Pfam:PF01734%3B Patatin No signal peptide TMHMM predicted 2 transmembrane helices mobB: molybdopterin-guanine dinucleot%3B~Family membership;gbkey=CDS;product=putative esterase;protein_id=CAL92949.1;transl_table=11
AM406670.1	EMBL	gene	357462	358568	.	+	.	ID=gene336;Name=azo0333;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0333
AM406670.1	EMBL	CDS	357462	358568	.	+	0	ID=cds331;Parent=gene336;Dbxref=EnsemblGenomes-Gn:azo0333,EnsemblGenomes-Tr:CAL92950,GOA:A1K295,InterPro:IPR002641,InterPro:IPR016035,InterPro:IPR021095,UniProtKB/TrEMBL:A1K295,NCBI_GP:CAL92950.1;Name=CAL92950.1;Note=Hypothetical protein Rv1063c/MT1093/Mb1092c. TREMBL:Q89EP5: 29%25 identity%2C 42%25 similarity InterPro:IPR002641%3B Patatin. Pfam:PF01734%3B Patatin 2A0108: nitrate transporter Absence of signal peptide No. of TMH's: 2 (TMHMM predicted).%3B~Family membership;gbkey=CDS;product=putative esterase;protein_id=CAL92950.1;transl_table=11
AM406670.1	EMBL	gene	358579	359157	.	-	.	ID=gene337;Name=azo0334;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0334
AM406670.1	EMBL	CDS	358579	359157	.	-	0	ID=cds332;Parent=gene337;Dbxref=EnsemblGenomes-Gn:azo0334,EnsemblGenomes-Tr:CAL92951,InterPro:IPR012347,InterPro:IPR025419,UniProtKB/TrEMBL:A1K296,NCBI_GP:CAL92951.1;Name=CAL92951.1;Note=Conserved hypothetical secreted protein. Homology to BPP2140 of Bordetella parapertussis 0f 44%25 (trembl|Q7W8J3(SRS)) No domains predicted. Signal peptide present. No TMH present. 6PTHBS: 6-pyruvoyl tetrahydrobiopterin%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92951.1;transl_table=11
AM406670.1	EMBL	gene	359461	360240	.	+	.	ID=gene338;Name=azo0335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0335
AM406670.1	EMBL	CDS	359461	360240	.	+	0	ID=cds333;Parent=gene338;Dbxref=EnsemblGenomes-Gn:azo0335,EnsemblGenomes-Tr:CAL92952,InterPro:IPR001633,UniProtKB/TrEMBL:A1K297,NCBI_GP:CAL92952.1;Name=CAL92952.1;Note=EAL-domain containing protein%2C ):This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function [1]. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.%3B~Conserved hypothetical protein;gbkey=CDS;product=EAL-domain containing protein;protein_id=CAL92952.1;transl_table=11
AM406670.1	EMBL	gene	360237	361499	.	+	.	ID=gene339;Name=azo0336;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0336
AM406670.1	EMBL	CDS	360237	361499	.	+	0	ID=cds334;Parent=gene339;Dbxref=EnsemblGenomes-Gn:azo0336,EnsemblGenomes-Tr:CAL92953,GOA:A1K298,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR029787,UniProtKB/TrEMBL:A1K298,NCBI_GP:CAL92953.1;Name=CAL92953.1;Note=PAS/PAC/GGDEF-domain containing protein%2C suggesting involvement into signalling processes. Similarity to SWISSPROT: sprot|YDAM_ECOLI (24%25 Escherichia coli%2C hyp. protein) / TREMBL: trembl|Q887F0 (59%25 Pseudomonas syringae%2C hyp. protein) Pfam: PF00990 GGDEF domain. This domain is found linked to a wide range of non-homologous domains in a variety of bacteria. The function of this domain is unknown%2C however it has been shown to be homologous to the adenylyl cyclase catalytic domain. This prediction correlates with the functional information available on two GGDEF-containing proteins%2C namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum%2C both of which regulate the turnover of cyclic diguanosine monophosphate. TIGRFAM:TIGR00254 putative diguanylate cyclase (GGDEF) domain. TIGR00229 PAS domain S-box.%3B~Conserved hypothetical protein;gbkey=CDS;product=PAS/PAC/GGDEF-domain containing protein;protein_id=CAL92953.1;transl_table=11
AM406670.1	EMBL	gene	361535	362107	.	-	.	ID=gene340;Name=azo0337;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0337
AM406670.1	EMBL	CDS	361535	362107	.	-	0	ID=cds335;Parent=gene340;Dbxref=EnsemblGenomes-Gn:azo0337,EnsemblGenomes-Tr:CAL92954,UniProtKB/TrEMBL:A1K299,NCBI_GP:CAL92954.1;Name=CAL92954.1;Note=Probable hypothetical Protein. Extremely weak homology with hits in the PDB. No Motif/Features/TMH/ or Signal peptide present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL92954.1;transl_table=11
AM406670.1	EMBL	gene	362400	363443	.	+	.	ID=gene341;Name=pstS1;gbkey=Gene;gene=pstS1;gene_biotype=protein_coding;locus_tag=azo0338
AM406670.1	EMBL	CDS	362400	363443	.	+	0	ID=cds336;Parent=gene341;Dbxref=EnsemblGenomes-Gn:azo0338,EnsemblGenomes-Tr:CAL92955,GOA:A1K2A0,InterPro:IPR005673,InterPro:IPR024370,UniProtKB/TrEMBL:A1K2A0,NCBI_GP:CAL92955.1;Name=CAL92955.1;Note=38%25 Peri-phosph.IPR006059%3B SBP_bac_1. Pfam:PF01547%3B SBP_bac_1%3B 1. TIGRFAMs:TIGR00975%3B 3a0107s03%3B 1. Signal peptide present.%3B~High confidence in function and specificity;gbkey=CDS;gene=pstS1;product=putative phosphate-binding periplasmic protein;protein_id=CAL92955.1;transl_table=11
AM406670.1	EMBL	gene	363495	363989	.	-	.	ID=gene342;Name=azo0339;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0339
AM406670.1	EMBL	CDS	363495	363989	.	-	0	ID=cds337;Parent=gene342;Dbxref=EnsemblGenomes-Gn:azo0339,EnsemblGenomes-Tr:CAL92956,InterPro:IPR013229,UniProtKB/TrEMBL:A1K2A1,NCBI_GP:CAL92956.1;Name=CAL92956.1;Note=Conserved hypothetical membrane protein. Homology to an orf of Acinetobacter sp. (strain ADP1) of 43%25 (tremble:Q6F6W4). no domains predicted. signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92956.1;transl_table=11
AM406670.1	EMBL	gene	364232	364546	.	-	.	ID=gene343;Name=azo0340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0340
AM406670.1	EMBL	CDS	364232	364546	.	-	0	ID=cds338;Parent=gene343;Dbxref=EnsemblGenomes-Gn:azo0340,EnsemblGenomes-Tr:CAL92957,UniProtKB/TrEMBL:A1K2A2,NCBI_GP:CAL92957.1;Name=CAL92957.1;Note=Conserved hypothetical membrane protein. No homology to the data bank No domains predicted No signal peptide 2 TMHs;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92957.1;transl_table=11
AM406670.1	EMBL	gene	364615	365061	.	+	.	ID=gene344;Name=azo0341;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0341
AM406670.1	EMBL	CDS	364615	365061	.	+	0	ID=cds339;Parent=gene344;Dbxref=EnsemblGenomes-Gn:azo0341,EnsemblGenomes-Tr:CAL92958,GOA:A1K2A3,InterPro:IPR002321,InterPro:IPR010980,InterPro:IPR012127,UniProtKB/TrEMBL:A1K2A3,NCBI_GP:CAL92958.1;Name=CAL92958.1;Note=Putative cytochrome c'. Homology to cytochrome c of R. gelatineosus (sprot|CYCP_RHOGE). CYTOCHROME C IS THE MOST WIDELY OCCURRING BACTERIAL C-TYPE CYTOCHROME. CYTOCHROMES C ARE HIGH-SPIN PROTEINS AND THE HEME HAS NO SIXTH LIGAND. THEIR EXACT FUNCTION IS NOT KNOWN. InterPro: Cytochrome c class II (IPR002321) Pfam: Cytochrome C probable signal peptide no TMHs%3B~Function unclear;gbkey=CDS;product=putative cytochrome c';protein_id=CAL92958.1;transl_table=11
AM406670.1	EMBL	gene	365077	365901	.	-	.	ID=gene345;Name=nhoA;gbkey=Gene;gene=nhoA;gene_biotype=protein_coding;locus_tag=azo0342
AM406670.1	EMBL	CDS	365077	365901	.	-	0	ID=cds340;Parent=gene345;Dbxref=EnsemblGenomes-Gn:azo0342,EnsemblGenomes-Tr:CAL92959,GOA:A1K2A4,InterPro:IPR001447,UniProtKB/TrEMBL:A1K2A4,NCBI_GP:CAL92959.1;Name=CAL92959.1;Note=Belongs to the arylamine n-acetyltransferase family. Arylamine N-acetyltransferase is a cytosolic enzyme of approximately 30kDa. It facilitates the transfer of an acetyl group from Acetyl Coenzyme A on to a wide range of arylamine%2C N-hydroxyarylamines and hydrazines. Similar to TREMBL:Q98D42 (47%25 identity)%3B TREMBL:Q8FHI6 (39%25 identity)%3B SWISSPROT:P77567 (39%25 identity). InterPro (IPR001447): N-acetyltransferase Pfam (PF00797): N-acetyltransferase.%3B~High confidence in function and specificity;gbkey=CDS;gene=nhoA;product=N-hydroxyarylamine O-acetyltransferase;protein_id=CAL92959.1;transl_table=11
AM406670.1	EMBL	gene	366042	366704	.	+	.	ID=gene346;Name=parA2;gbkey=Gene;gene=parA2;gene_biotype=protein_coding;locus_tag=azo0343
AM406670.1	EMBL	CDS	366042	366704	.	+	0	ID=cds341;Parent=gene346;Dbxref=EnsemblGenomes-Gn:azo0343,EnsemblGenomes-Tr:CAL92960,InterPro:IPR002586,InterPro:IPR027417,UniProtKB/TrEMBL:A1K2A5,NCBI_GP:CAL92960.1;Name=CAL92960.1;Note=Sporulation initiation inhibitor protein soj. INHIBITS THE INITIATION OF SPORULATION SPO0J ANTAGONIZES THIS INHIBITION. SOJ ULTIMATELY INHIBITS THE ACTIVATION (PHOSPHORYLATION) OF SPO0A. IT IS NOT REQUIRED FOR CHROMOSOME PARTITIONING. InterPro: ParA family ATPase%3B~Function unclear;gbkey=CDS;gene=parA2;product=probable ParA family protein;protein_id=CAL92960.1;transl_table=11
AM406670.1	EMBL	gene	366705	367574	.	+	.	ID=gene347;Name=azo0344;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0344
AM406670.1	EMBL	CDS	366705	367574	.	+	0	ID=cds342;Parent=gene347;Dbxref=EnsemblGenomes-Gn:azo0344,EnsemblGenomes-Tr:CAL92961,UniProtKB/TrEMBL:A1K2A6,NCBI_GP:CAL92961.1;Name=CAL92961.1;Note=Probable Hypothetical Protein. No domains%2Cfeatures%2Cmotifs%2C or signal peptide present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL92961.1;transl_table=11
AM406670.1	EMBL	gene	367763	369865	.	-	.	ID=gene348;Name=azo0345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0345
AM406670.1	EMBL	CDS	367763	369865	.	-	0	ID=cds343;Parent=gene348;Dbxref=EnsemblGenomes-Gn:azo0345,EnsemblGenomes-Tr:CAL92962,GOA:A1K2A7,InterPro:IPR000212,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR027417,UniProtKB/TrEMBL:A1K2A7,NCBI_GP:CAL92962.1;Name=CAL92962.1;Note=ATP-dependent DNA helicase pcrA (EC 3.6.1.-). InterPro: UvrD/REP helicase%3B~Specificity unclear;gbkey=CDS;product=ATP-dependent DNA helicase;protein_id=CAL92962.1;transl_table=11
AM406670.1	EMBL	gene	369965	371605	.	+	.	ID=gene349;Name=azo0346;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0346
AM406670.1	EMBL	CDS	369965	371605	.	+	0	ID=cds344;Parent=gene349;Dbxref=EnsemblGenomes-Gn:azo0346,EnsemblGenomes-Tr:CAL92963,GOA:A1K2A8,InterPro:IPR004705,InterPro:IPR004709,InterPro:IPR006153,InterPro:IPR018422,UniProtKB/TrEMBL:A1K2A8,NCBI_GP:CAL92963.1;Name=CAL92963.1;Note=42%25 Na_H_porter.IPR004705%3B NaHantiport_bac.Bacterial Na+/H+ antiporter Pfam:PF00999%3B Na_H_Exchanger%3B 1. TIGRFAMs:TIGR00831%3B a_cpa1%3B 1. Signal peptide present TMHelix: 12%3B~High confidence in function and specificity;gbkey=CDS;product=putative Na+/H+ antiporter;protein_id=CAL92963.1;transl_table=11
AM406670.1	EMBL	gene	371653	372096	.	+	.	ID=gene350;Name=azo0347;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0347
AM406670.1	EMBL	CDS	371653	372096	.	+	0	ID=cds345;Parent=gene350;Dbxref=EnsemblGenomes-Gn:azo0347,EnsemblGenomes-Tr:CAL92964,InterPro:IPR025392,UniProtKB/TrEMBL:A1K2A9,NCBI_GP:CAL92964.1;Name=CAL92964.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. Signal P reporting Signal Peptide present. No TMH reported Present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL92964.1;transl_table=11
AM406670.1	EMBL	gene	372236	373684	.	+	.	ID=gene351;Name=azo0348;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0348
AM406670.1	EMBL	CDS	372236	373684	.	+	0	ID=cds346;Parent=gene351;Dbxref=EnsemblGenomes-Gn:azo0348,EnsemblGenomes-Tr:CAL92965,GOA:A1K2B0,InterPro:IPR000537,InterPro:IPR023214,UniProtKB/TrEMBL:A1K2B0,NCBI_GP:CAL92965.1;Name=CAL92965.1;Note=Prenyltransferase family protein. InterPro: UbiA prenyltransferase%3B~Specificity unclear;gbkey=CDS;product=4-hydroxybenzoate octaprenyltransferase;protein_id=CAL92965.1;transl_table=11
AM406670.1	EMBL	gene	373681	374046	.	+	.	ID=gene352;Name=azo0349;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0349
AM406670.1	EMBL	CDS	373681	374046	.	+	0	ID=cds347;Parent=gene352;Dbxref=EnsemblGenomes-Gn:azo0349,EnsemblGenomes-Tr:CAL92966,GOA:A1K2B1,InterPro:IPR000620,UniProtKB/TrEMBL:A1K2B1,NCBI_GP:CAL92966.1;Name=CAL92966.1;Note=Putative Small Multi-Drug resistant(SMR)family protein%2C 30%25 identical to TrEMBL%3BQ8XZS2. Has PF00893%2CSmall Multidrug Resistance protein%3BIPR000390%2C Smr:This family is the Small Multidrug Resistance (SMR) family. Several members have been shown to export a range of toxins%2C including ethidium bromide and quaternary ammonium compounds%2C through coupling with proton influx.;gbkey=CDS;product=putative Small Multi-Drug resistant family protein;protein_id=CAL92966.1;transl_table=11
AM406670.1	EMBL	gene	374102	375397	.	-	.	ID=gene353;Name=azo0350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0350
AM406670.1	EMBL	CDS	374102	375397	.	-	0	ID=cds348;Parent=gene353;Dbxref=EnsemblGenomes-Gn:azo0350,EnsemblGenomes-Tr:CAL92967,InterPro:IPR027372,UniProtKB/TrEMBL:A1K2B2,NCBI_GP:CAL92967.1;Name=CAL92967.1;Note=Conserved hypothetical secreted protein. Homology to gll2146 of G. violaceus of 44%25 (trembl|Q7NIN7(SRS)) no domains predicted signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92967.1;transl_table=11
AM406670.1	EMBL	gene	375522	376307	.	-	.	ID=gene354;Name=nodJ;gbkey=Gene;gene=nodJ;gene_biotype=protein_coding;locus_tag=azo0351
AM406670.1	EMBL	CDS	375522	376307	.	-	0	ID=cds349;Parent=gene354;Dbxref=EnsemblGenomes-Gn:azo0351,EnsemblGenomes-Tr:CAL92968,GOA:A1K2B3,InterPro:IPR000412,InterPro:IPR005981,InterPro:IPR013525,UniProtKB/TrEMBL:A1K2B3,NCBI_GP:CAL92968.1;Name=CAL92968.1;Note=Forms with NodI a membrane transport complex involved in the nodulation process. it probably exports a modified beta-1%2C4-linked n-acetylglucosamine oligosaccharide. Belongs to the ABC-2 integral membrane protein family%2C TREMBL:Q7WHD1 (49%25 identity)%3B SWISSPROT:O52619 (49%25 identity). InterPro (IPR000412): ABC transporter%2C family 2. Pfam (PF01061): ABC-2 type transporter. TMHMM reporting six transmembrane helices. TC (3.A.1.102): The Lipooligosaccharide Exporter (LOSE) Family.%3B~High confidence in function and specificity;gbkey=CDS;gene=nodJ;product=ABC transporter permease NodJ;protein_id=CAL92968.1;transl_table=11
AM406670.1	EMBL	gene	376345	376629	.	-	.	ID=gene355;Name=azo0352;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0352
AM406670.1	EMBL	CDS	376345	376629	.	-	0	ID=cds350;Parent=gene355;Dbxref=EnsemblGenomes-Gn:azo0352,EnsemblGenomes-Tr:CAL92969,UniProtKB/TrEMBL:A1K2B4,NCBI_GP:CAL92969.1;Name=CAL92969.1;Note=Conserved hypothetical protein. Homology to mvpT of E. carotovora of 44%25 (trembl:Q6D393) No domains predicted. No TMHs No signal peptide;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92969.1;transl_table=11
AM406670.1	EMBL	gene	376663	376758	.	-	.	ID=gene356;Name=azo0353;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0353
AM406670.1	EMBL	CDS	376663	376758	.	-	0	ID=cds351;Parent=gene356;Dbxref=EnsemblGenomes-Gn:azo0353,EnsemblGenomes-Tr:CAL92970,UniProtKB/TrEMBL:A1K2B5,NCBI_GP:CAL92970.1;Name=CAL92970.1;Note=Hypothetical protein predicted by Glimmer/Critica. No homology to the data bank. No domains predicted. No signal peptide No TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL92970.1;transl_table=11
AM406670.1	EMBL	gene	377176	378156	.	+	.	ID=gene357;Name=azo0354;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0354
AM406670.1	EMBL	CDS	377176	378156	.	+	0	ID=cds352;Parent=gene357;Dbxref=EnsemblGenomes-Gn:azo0354,EnsemblGenomes-Tr:CAL92971,GOA:A1K2B6,InterPro:IPR001525,InterPro:IPR029063,UniProtKB/TrEMBL:A1K2B6,NCBI_GP:CAL92971.1;Name=CAL92971.1;Note=Region start changed from 377491 to 377176 (315 bases);gbkey=CDS;product=putative methylase;protein_id=CAL92971.1;transl_table=11
AM406670.1	EMBL	gene	378157	379323	.	-	.	ID=gene358;Name=azo0355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0355
AM406670.1	EMBL	CDS	378157	379323	.	-	0	ID=cds353;Parent=gene358;Dbxref=EnsemblGenomes-Gn:azo0355,EnsemblGenomes-Tr:CAL92972,GOA:A1K2B7,InterPro:IPR007560,PDB:4OC8,UniProtKB/TrEMBL:A1K2B7,NCBI_GP:CAL92972.1;Name=CAL92972.1;Note=Conserved hypothetical protein. Homology to lpg1234 of L.pneumophila of 42%25 (gnl|keqq|lpn:lpg1234(KEGG)). Has PF04471%2C Restriction endonuclease%3BIPR007560%2C Mrr_cat%3B Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92972.1;transl_table=11
AM406670.1	EMBL	gene	379320	379709	.	-	.	ID=gene359;Name=vsr;gbkey=Gene;gene=vsr;gene_biotype=protein_coding;locus_tag=azo0356
AM406670.1	EMBL	CDS	379320	379709	.	-	0	ID=cds354;Parent=gene359;Dbxref=EnsemblGenomes-Gn:azo0356,EnsemblGenomes-Tr:CAL92973,GOA:A1K2B8,InterPro:IPR004603,InterPro:IPR007569,InterPro:IPR011335,UniProtKB/TrEMBL:A1K2B8,NCBI_GP:CAL92973.1;Name=CAL92973.1;Note=Putative hypothetical very short patch repair endonuclease. Homology to vrs of E. coli of 29%25 (sprot|VSR_ECOLI) All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. Interpro: DNA mismatch endonuclease vsr (IPR004603) Pfam: DNA mismatch endonuclease Vsr Tigrfam: vsr: DNA mismatch endonuclease no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=vsr;product=putative hypothetical very short patch repair endonuclease;protein_id=CAL92973.1;transl_table=11
AM406670.1	EMBL	gene	379781	380920	.	-	.	ID=gene360;Name=azo0357;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0357
AM406670.1	EMBL	CDS	379781	380920	.	-	0	ID=cds355;Parent=gene360;Dbxref=EnsemblGenomes-Gn:azo0357,EnsemblGenomes-Tr:CAL92974,InterPro:IPR011006,UniProtKB/TrEMBL:A1K2B9,NCBI_GP:CAL92974.1;Name=CAL92974.1;gbkey=CDS;inference=nucleotide motif:Gismo;product=hypothetical protein;protein_id=CAL92974.1;transl_table=11
AM406670.1	EMBL	gene	380934	383189	.	-	.	ID=gene361;Name=azo0358;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0358
AM406670.1	EMBL	CDS	380934	383189	.	-	0	ID=cds356;Parent=gene361;Dbxref=EnsemblGenomes-Gn:azo0358,EnsemblGenomes-Tr:CAL92975,GOA:A1K2C0,InterPro:IPR003594,InterPro:IPR004358,InterPro:IPR005467,UniProtKB/TrEMBL:A1K2C0,NCBI_GP:CAL92975.1;Name=CAL92975.1;Note=Region start changed from 382943 to 383189 (246 bases);gbkey=CDS;product=putative two-component sensor kinase;protein_id=CAL92975.1;transl_table=11
AM406670.1	EMBL	gene	383349	384059	.	-	.	ID=gene362;Name=azo0359;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0359
AM406670.1	EMBL	CDS	383349	384059	.	-	0	ID=cds357;Parent=gene362;Dbxref=EnsemblGenomes-Gn:azo0359,EnsemblGenomes-Tr:CAL92976,InterPro:IPR011528,UniProtKB/TrEMBL:A1K2C1,NCBI_GP:CAL92976.1;Name=CAL92976.1;Note=Conserved hypothetical membrane protein. Homology to MS2110 of M.succiniciproducens of 40%25 (gi|52426165|ref|YP_089302.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. 1 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical membrane protein.;protein_id=CAL92976.1;transl_table=11
AM406670.1	EMBL	gene	384192	385178	.	-	.	ID=gene363;Name=nodI;gbkey=Gene;gene=nodI;gene_biotype=protein_coding;locus_tag=azo0360
AM406670.1	EMBL	CDS	384192	385178	.	-	0	ID=cds358;Parent=gene363;Dbxref=EnsemblGenomes-Gn:azo0360,EnsemblGenomes-Tr:CAL92977,GOA:A1K2C2,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR015851,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K2C2,NCBI_GP:CAL92977.1;Name=CAL92977.1;Note=Nod factor export ATP-binding protein. Part of the ABC transporter complex nodIJ (TC 3.A.1.102.1) involved in the export of LCO (lipo-chitin oligosaccharide) and a modified beta-14-linked N- acetylglucosamine oligosaccharide. Responsible for energy coupling to the transport system%2C TREMBL:Q7W9D3 (58%25 identity)%3B SWISSPROT:O52618 (53%25 identity). InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003593): AAA ATPase. Pfam (PF00005): ABC transporter. TC (3.A.1.102) The Lipooligosaccharide Exporter (LOSE) Family.%3B~High confidence in function and specificity;gbkey=CDS;gene=nodI;product=ABC transporter ATP-binding protein NodI;protein_id=CAL92977.1;transl_table=11
AM406670.1	EMBL	gene	385249	385866	.	-	.	ID=gene364;Name=azo0361;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0361
AM406670.1	EMBL	CDS	385249	385866	.	-	0	ID=cds359;Parent=gene364;Dbxref=EnsemblGenomes-Gn:azo0361,EnsemblGenomes-Tr:CAL92978,GOA:A1K2C3,InterPro:IPR004045,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:A1K2C3,NCBI_GP:CAL92978.1;Name=CAL92978.1;Note=Conserved hypothetical glutathione S-transferase protein. Homology to cv3306 of C. violaceum of 50%25 (trembl|Q7NSW3). Conjugation of reduced glutathione to a variety of targets. Pfam: Glutathione S-transferase%2C N-terminal domain%3B Glutathione S-transferase%2C C-terminal domain. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical glutathione S-transferase;protein_id=CAL92978.1;transl_table=11
AM406670.1	EMBL	gene	385891	386562	.	-	.	ID=gene365;Name=azo0362;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0362
AM406670.1	EMBL	CDS	385891	386562	.	-	0	ID=cds360;Parent=gene365;Dbxref=EnsemblGenomes-Gn:azo0362,EnsemblGenomes-Tr:CAL92979,InterPro:IPR029058,InterPro:IPR029059,UniProtKB/TrEMBL:A1K2C4,NCBI_GP:CAL92979.1;Name=CAL92979.1;Note=Conserved hypothetical protein. Homology to rsc0328 of R. solanacearum of 59%25 (trembl|Q8Y2K7). Pfam: Prolyl oligopeptidas family no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92979.1;transl_table=11
AM406670.1	EMBL	gene	386572	386892	.	-	.	ID=gene366;Name=fer21;gbkey=Gene;gene=fer21;gene_biotype=protein_coding;locus_tag=azo0363
AM406670.1	EMBL	CDS	386572	386892	.	-	0	ID=cds361;Parent=gene366;Dbxref=EnsemblGenomes-Gn:azo0363,EnsemblGenomes-Tr:CAL92980,InterPro:IPR012336,UniProtKB/TrEMBL:A1K2C5,NCBI_GP:CAL92980.1;Name=CAL92980.1;Note=Putative ferredoxin 2fe-2s protein. Homology to fer2 of C. pasteruianum of 35%25 (sprot|FER2_CLOPA). Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=fer21;product=putative ferredoxin 2Fe-2S protein;protein_id=CAL92980.1;transl_table=11
AM406670.1	EMBL	gene	386915	388000	.	-	.	ID=gene367;Name=azo0364;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0364
AM406670.1	EMBL	CDS	386915	388000	.	-	0	ID=cds362;Parent=gene367;Dbxref=EnsemblGenomes-Gn:azo0364,EnsemblGenomes-Tr:CAL92981,InterPro:IPR006976,UniProtKB/TrEMBL:A1K2C6,NCBI_GP:CAL92981.1;Name=CAL92981.1;Note=Conserved hypothtical membrane protein. Homology to rc03284 of R. solanacearum of 35%25 (trembl|Q8Y2L8(SRS) Has a weak hit to PF04892(IPR006976%3BvanZ)in Smart:This family contains several examples of the VanZ protein%2C but also contains examples of phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors%2C accumulated in the presence of ramoplanin%2Cshowed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors . no signal peptide 10 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92981.1;transl_table=11
AM406670.1	EMBL	gene	388715	389227	.	+	.	ID=gene368;Name=azo0365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0365
AM406670.1	EMBL	CDS	388715	389227	.	+	0	ID=cds363;Parent=gene368;Dbxref=EnsemblGenomes-Gn:azo0365,EnsemblGenomes-Tr:CAL92982,InterPro:IPR001763,UniProtKB/TrEMBL:A1K2C7,NCBI_GP:CAL92982.1;Name=CAL92982.1;Note=Conserved Hypothetical protein%2C Q82Y48%2CRhodanese type protein. Has SMART SM00450 Rhodanese Homology Domain(RHOD)starting at position 47-153aa%3BRhodanese%2C a sulfurtransferase involved in cyanide detoxification (see IPR001307) shares evolutionary relationship with a large family of proteins. No Signal peptide or TMH reported Present.%3B~Family membership;gbkey=CDS;product=Conserved Hypothetical protein;protein_id=CAL92982.1;transl_table=11
AM406670.1	EMBL	gene	389292	390254	.	+	.	ID=gene369;Name=srpH;gbkey=Gene;gene=srpH;gene_biotype=protein_coding;locus_tag=azo0366
AM406670.1	EMBL	CDS	389292	390254	.	+	0	ID=cds364;Parent=gene369;Dbxref=EnsemblGenomes-Gn:azo0366,EnsemblGenomes-Tr:CAL92983,GOA:A1K2C8,InterPro:IPR001451,InterPro:IPR011004,UniProtKB/TrEMBL:A1K2C8,NCBI_GP:CAL92983.1;Name=CAL92983.1;Note=Probable serine O-acetyltransferase plasmid (EC 2.3.1.30) (SAT). Homology to srpH of Synechococcus of 55%25 (sprot|SRPH_SYNP7) no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=srpH;product=probable serine O-acetyltransferase;protein_id=CAL92983.1;transl_table=11
AM406670.1	EMBL	gene	390251	390484	.	+	.	ID=gene370;Name=azo0367;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0367
AM406670.1	EMBL	CDS	390251	390484	.	+	0	ID=cds365;Parent=gene370;Dbxref=EnsemblGenomes-Gn:azo0367,EnsemblGenomes-Tr:CAL92984,GOA:A1K2C9,InterPro:IPR001387,InterPro:IPR010982,UniProtKB/TrEMBL:A1K2C9,NCBI_GP:CAL92984.1;Name=CAL92984.1;Note=SgrAlc control protein%2C%3B~High confidence in function and specificity;gbkey=CDS;product=SgrAlc control protein;protein_id=CAL92984.1;transl_table=11
AM406670.1	EMBL	gene	390602	391528	.	+	.	ID=gene371;Name=mmpI;gbkey=Gene;gene=mmpI;gene_biotype=protein_coding;locus_tag=azo0368
AM406670.1	EMBL	CDS	390602	391528	.	+	0	ID=cds366;Parent=gene371;Dbxref=EnsemblGenomes-Gn:azo0368,EnsemblGenomes-Tr:CAL92985,UniProtKB/TrEMBL:A1K2D0,NCBI_GP:CAL92985.1;Name=CAL92985.1;Note=Probable immunodominant 35 kDa protein. Homology to mmpI of Mycobacterium avium of 69%25 (gi|2498566|sp|Q48899|MMP1_MYCAV(SwissProt (ExPASy)). No domains predicted. No signal peptide. No TMHs.%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=mmpI;product=probable immunodominant 35kDa protein;protein_id=CAL92985.1;transl_table=11
AM406670.1	EMBL	gene	391503	393335	.	+	.	ID=gene372;Name=csdB;gbkey=Gene;gene=csdB;gene_biotype=protein_coding;locus_tag=azo0369
AM406670.1	EMBL	CDS	391503	393335	.	+	0	ID=cds367;Parent=gene372;Dbxref=EnsemblGenomes-Gn:azo0369,EnsemblGenomes-Tr:CAL92986,GOA:A1K2D1,InterPro:IPR000192,InterPro:IPR010970,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K2D1,NCBI_GP:CAL92986.1;Name=CAL92986.1;Note=Cysteine desulphurases required for the mobilization of sulphur from cysteine. They are present in all organisms%2C where they are involved in iron-sulphur (Fe-S) cluster biosynthesis. Similar to sprot|CSD1_MYCLE (54%25)%2C to trembl|Q82WT8 (55%25) and to tremblnew|BAB21542 (34%25). Pfam (PF00266): Aminotransferase class-V Pfam (PF01041): DegT/DnrJ/EryC1/StrS aminotransferase family%3B~Function unclear;gbkey=CDS;gene=csdB;product=probable cysteine desulphurase;protein_id=CAL92986.1;transl_table=11
AM406670.1	EMBL	gene	393595	394170	.	+	.	ID=gene373;Name=azo0370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0370
AM406670.1	EMBL	CDS	393595	394170	.	+	0	ID=cds368;Parent=gene373;Dbxref=EnsemblGenomes-Gn:azo0370,EnsemblGenomes-Tr:CAL92987,GOA:A1K2D2,InterPro:IPR001727,UniProtKB/TrEMBL:A1K2D2,NCBI_GP:CAL92987.1;Name=CAL92987.1;Note=Conserved hypothetical membrane protein. Homology to NE2493 of Nitrosomonas europaea of 67%25 (trembl|Q82S65(SRS)). Has PF01169%2C Uncharacterized protein family UPF0016%3BIPR001727%3B This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. No signal peptide. 5 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL92987.1;transl_table=11
AM406670.1	EMBL	gene	394317	395381	.	+	.	ID=gene374;Name=azo0371;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0371
AM406670.1	EMBL	CDS	394317	395381	.	+	0	ID=cds369;Parent=gene374;Dbxref=EnsemblGenomes-Gn:azo0371,EnsemblGenomes-Tr:CAL92988,UniProtKB/TrEMBL:A1K2D3,NCBI_GP:CAL92988.1;Name=CAL92988.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL92988.1;transl_table=11
AM406670.1	EMBL	gene	395413	395931	.	-	.	ID=gene375;Name=azo0372;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0372
AM406670.1	EMBL	CDS	395413	395931	.	-	0	ID=cds370;Parent=gene375;Dbxref=EnsemblGenomes-Gn:azo0372,EnsemblGenomes-Tr:CAL92989,InterPro:IPR003033,UniProtKB/TrEMBL:A1K2D4,NCBI_GP:CAL92989.1;Name=CAL92989.1;Note=Entry name SWISSPROT:YHBT_ECOLI Prim. accession # P45474 InterPro IPR003033%3B SCP2. Pfam PF02036%3B SCP2%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.001 Number of predicted TMHs: 0 Identities %3D 46/107 (42%25);gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92989.1;transl_table=11
AM406670.1	EMBL	gene	395946	396842	.	-	.	ID=gene376;Name=azo0373;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0373
AM406670.1	EMBL	CDS	395946	396842	.	-	0	ID=cds371;Parent=gene376;Dbxref=EnsemblGenomes-Gn:azo0373,EnsemblGenomes-Tr:CAL92990,GOA:A1K2D5,InterPro:IPR001539,UniProtKB/TrEMBL:A1K2D5,NCBI_GP:CAL92990.1;Name=CAL92990.1;Note=Conserved hypothetical peptidase. Homology to Rsp0969 of R. solanacearum of 51%25 (trembl|Q8XR90). Pfam: Peptidas family U32 no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical peptidase;protein_id=CAL92990.1;transl_table=11
AM406670.1	EMBL	gene	396857	397870	.	-	.	ID=gene377;Name=azo0374;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0374
AM406670.1	EMBL	CDS	396857	397870	.	-	0	ID=cds372;Parent=gene377;Dbxref=EnsemblGenomes-Gn:azo0374,EnsemblGenomes-Tr:CAL92991,GOA:A1K2D6,InterPro:IPR001539,UniProtKB/TrEMBL:A1K2D6,NCBI_GP:CAL92991.1;Name=CAL92991.1;Note=Conserved hypothetical peptidase. Homology to cv4084 of C. violaceum of 64%25 (trembl|Q7NQQ39. Pfam: Peptidas family U32 no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical peptidase;protein_id=CAL92991.1;transl_table=11
AM406670.1	EMBL	gene	398061	399524	.	-	.	ID=gene378;Name=azo0375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0375
AM406670.1	EMBL	CDS	398061	399524	.	-	0	ID=cds373;Parent=gene378;Dbxref=EnsemblGenomes-Gn:azo0375,EnsemblGenomes-Tr:CAL92992,GOA:A1K2D7,InterPro:IPR001734,InterPro:IPR018212,UniProtKB/TrEMBL:A1K2D7,NCBI_GP:CAL92992.1;Name=CAL92992.1;Note=TREMBL:Q8Y273: 59%25 identity%2C 72%25 similarity Osmoregulated proline transporter (Sodium/proline symporter). CATALYZES THE SODIUM-DEPENDENT UPTAKE OF EXTRACELLULAR PROLINE. InterPro: Sodium:solute symporter family InterPro:IPR001734%3B Na/solut_symport. Pfam:PF00474%3B SSF%3B TMHMM predicted transmembrane helices sss: SSS sodium solute transporter sup%3B~Function unclear;gbkey=CDS;product=probABLE SODIUM/SOLUTE SYMPORTER TRANSMEMBRANE protein;protein_id=CAL92992.1;transl_table=11
AM406670.1	EMBL	gene	399721	401841	.	-	.	ID=gene379;Name=azo0376;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0376
AM406670.1	EMBL	CDS	399721	401841	.	-	0	ID=cds374;Parent=gene379;Dbxref=EnsemblGenomes-Gn:azo0376,EnsemblGenomes-Tr:CAL92993,GOA:A1K2D8,InterPro:IPR005814,InterPro:IPR006035,InterPro:IPR010164,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR020855,InterPro:IPR023696,UniProtKB/TrEMBL:A1K2D8,NCBI_GP:CAL92993.1;Name=CAL92993.1;Note=Conserved hypothetical protein. Homology to ebA3609 of Azoarcus sp. EbN1 of 62%25 (gnl|keqq|eba:ebA3609(KEGG)). InterPro: Aminotransferase class-III (IPR005814)%2C Arginase family (IPR00594). Pfam: Aminotransferase class-III%2CArginase family. Tigrfam: argD: acetylornithine and succinylornithine aminotransferase%2C GABAtrnsam:4-aminobutyrate aminotransferase. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL92993.1;transl_table=11
AM406670.1	EMBL	gene	401938	403467	.	-	.	ID=gene380;Name=azo0377;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0377
AM406670.1	EMBL	CDS	401938	403467	.	-	0	ID=cds375;Parent=gene380;Dbxref=EnsemblGenomes-Gn:azo0377,EnsemblGenomes-Tr:CAL92994,GOA:A1K2D9,InterPro:IPR004147,InterPro:IPR010232,InterPro:IPR011009,UniProtKB/TrEMBL:A1K2D9,NCBI_GP:CAL92994.1;Name=CAL92994.1;Note=Probable ubiquinone biosynthesis protein ubiB. Required probably indirectly for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol the fourth step in ubiquinone biosynthesis (By similarity). TREMBL:Q82TL7:65%25 identity InterPro:IPR004147%3B ABC1. IPR010232%3B UbiB. Pfam:PF03109%3B met_pdase_II: methionine aminopeptida%3B~High confidence in function and specificity;gbkey=CDS;product=probable ubiquinone biosynthesis protein;protein_id=CAL92994.1;transl_table=11
AM406670.1	EMBL	gene	403712	405787	.	-	.	ID=gene381;Name=azo0378;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0378
AM406670.1	EMBL	CDS	403712	405787	.	-	0	ID=cds376;Parent=gene381;Dbxref=EnsemblGenomes-Gn:azo0378,EnsemblGenomes-Tr:CAL92995,GOA:A1K2E0,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1K2E0,NCBI_GP:CAL92995.1;Name=CAL92995.1;Note=Putative TonB-dependent receptor. Homology to bpp0186 ao B. parapertussis of 54%25 (trembl|Q7W206) The TonB protein interacts with outer membrane receptor proteins that carry out high-affinity binding and energy-dependent uptake of specific substrates into the periplasmic space. These substrates are either poorly permeable through the porin channels or are encountered at very low concentrations. In the absence of TonB these receptors bind their substrates but do not carry out active transport. Interpro: TonB-dependent receptor (IPR000531) Pfam: TonB-dependent receptor (PF00593) signal Peptide no TMHs%3B~Family membership;gbkey=CDS;product=putative TonB-dependent receptor;protein_id=CAL92995.1;transl_table=11
AM406670.1	EMBL	gene	405969	406301	.	-	.	ID=gene382;Name=azo0379;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0379
AM406670.1	EMBL	CDS	405969	406301	.	-	0	ID=cds377;Parent=gene382;Dbxref=EnsemblGenomes-Gn:azo0379,EnsemblGenomes-Tr:CAL92996,UniProtKB/TrEMBL:A1K2E1,NCBI_GP:CAL92996.1;Name=CAL92996.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide. No TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL92996.1;transl_table=11
AM406670.1	EMBL	gene	406538	408301	.	+	.	ID=gene383;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=azo0380
AM406670.1	EMBL	CDS	406538	408301	.	+	0	ID=cds378;Parent=gene383;Dbxref=EnsemblGenomes-Gn:azo0380,EnsemblGenomes-Tr:CAL92997,GOA:A1K2E2,InterPro:IPR001278,InterPro:IPR001412,InterPro:IPR005148,InterPro:IPR008909,InterPro:IPR009080,InterPro:IPR014729,NCBI_GP:CAL92997.1;Name=CAL92997.1;Note=Putative arginine-tRNA ligase (EC 6.1.1.19). Homology to argS of E. coli of 25%25 (sprot:SYR_ECOLI) CATALYTIC ACTIVITY: ATP + L-arginine + tRNA(Arg) %3D AMP + diphosphate + L-arginyl-tRNA(Arg). InterPro: Arginyl-tRNA synthetase (IPR001278)%3B Aminoacyl-transfer RNA synthetase class-I (IPR001412) Tigrfam: argS: arginyl-tRNA synthetase Pfam: tRNA synthetases class I no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=argS;product=putative arginine-tRNA ligase;protein_id=CAL92997.1;transl_table=11
AM406670.1	EMBL	gene	408318	408902	.	+	.	ID=gene384;Name=azo0381;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0381
AM406670.1	EMBL	CDS	408318	408902	.	+	0	ID=cds379;Parent=gene384;Dbxref=EnsemblGenomes-Gn:azo0381,EnsemblGenomes-Tr:CAL92998,InterPro:IPR007730,UniProtKB/TrEMBL:A1K2E3,NCBI_GP:CAL92998.1;Name=CAL92998.1;Note=Conserved hypothetical secreted protein. Homology to CV3999 of C.violaceum of 34%25 (trembl|Q7NQY6(SRS)). Pfam: Sporulation related repeat This 35 residue repeat is found in proteins involved in sporulation and cell division such as FtsN%2C DedD%2C and CwlM. This repeat might be involved in binding peptidoglycan (Bateman A pers obs). No TMHs. Signal peptide present%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL92998.1;transl_table=11
AM406670.1	EMBL	gene	408982	409629	.	+	.	ID=gene385;Name=dsbA;gbkey=Gene;gene=dsbA;gene_biotype=protein_coding;locus_tag=azo0382
AM406670.1	EMBL	CDS	408982	409629	.	+	0	ID=cds380;Parent=gene385;Dbxref=EnsemblGenomes-Gn:azo0382,EnsemblGenomes-Tr:CAL92999,GOA:A1K2E4,InterPro:IPR001853,InterPro:IPR012336,InterPro:IPR017937,InterPro:IPR023205,UniProtKB/TrEMBL:A1K2E4,NCBI_GP:CAL92999.1;Name=CAL92999.1;Note=Putative protein disulfide-isomerase. Homology to dsbA of P. flourescens of 34%25. Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins. Tigrfam: redox_disulf_1: redox-active disulfid Pfam: DSBA Oxidoreductase signal peptide no TMHS%3B~Family membership;gbkey=CDS;gene=dsbA;product=putative protein disulfide-isomerase;protein_id=CAL92999.1;transl_table=11
AM406670.1	EMBL	gene	409658	410446	.	+	.	ID=gene386;Name=azo0383;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0383
AM406670.1	EMBL	CDS	409658	410446	.	+	0	ID=cds381;Parent=gene386;Dbxref=EnsemblGenomes-Gn:azo0383,EnsemblGenomes-Tr:CAL93000,GOA:A1K2E5,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K2E5,NCBI_GP:CAL93000.1;Name=CAL93000.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8Y2Q1 (42%25 identity)%3B SWISSPROT:P25970 (34%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=short chain dehydrogenase family protein;protein_id=CAL93000.1;transl_table=11
AM406670.1	EMBL	gene	410530	410949	.	+	.	ID=gene387;Name=azo0384;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0384
AM406670.1	EMBL	CDS	410530	410949	.	+	0	ID=cds382;Parent=gene387;Dbxref=EnsemblGenomes-Gn:azo0384,EnsemblGenomes-Tr:CAL93001,UniProtKB/TrEMBL:A1K2E6,NCBI_GP:CAL93001.1;Name=CAL93001.1;Note=Hypothetical protein. No Good homologs in the DB matching the length of the protein. No Significant domains%2Cfeatures%2Cmotifs present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL93001.1;transl_table=11
AM406670.1	EMBL	gene	410991	412268	.	+	.	ID=gene388;Name=azo0385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0385
AM406670.1	EMBL	CDS	410991	412268	.	+	0	ID=cds383;Parent=gene388;Dbxref=EnsemblGenomes-Gn:azo0385,EnsemblGenomes-Tr:CAL93002,GOA:A1K2E7,InterPro:IPR018584,UniProtKB/TrEMBL:A1K2E7,NCBI_GP:CAL93002.1;Name=CAL93002.1;Note=Hypothetical membrane protein. Homology to vng2292h of Halobacterium sp. of 25%25 (trembl|Q9HN16(SRS). no domains predicted .no signal peptide. 10 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93002.1;transl_table=11
AM406670.1	EMBL	gene	412265	413521	.	+	.	ID=gene389;Name=azo0386;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0386
AM406670.1	EMBL	CDS	412265	413521	.	+	0	ID=cds384;Parent=gene389;Dbxref=EnsemblGenomes-Gn:azo0386,EnsemblGenomes-Tr:CAL93003,UniProtKB/TrEMBL:A1K2E8,NCBI_GP:CAL93003.1;Name=CAL93003.1;Note=Hypothetical membrane protein. No good homology to a protein of similar length in the data bank. no domains predicted no singal peptide 9 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93003.1;transl_table=11
AM406670.1	EMBL	gene	413530	414396	.	+	.	ID=gene390;Name=azo0387;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0387
AM406670.1	EMBL	CDS	413530	414396	.	+	0	ID=cds385;Parent=gene390;Dbxref=EnsemblGenomes-Gn:azo0387,EnsemblGenomes-Tr:CAL93004,InterPro:IPR002491,UniProtKB/TrEMBL:A1K2E9,NCBI_GP:CAL93004.1;Name=CAL93004.1;Note=Conserved hypothetical periplasmic binding proten. Homology to rs03250 of R. solanacearum of 53%25 (trembl|Q8Y2Q2). Interpro: Periplasmic binding protein (IPR002491). Pfam: Periplasmic binding protein (PF01497). This family includes bacterial periplasmic binding proteins. Several of which are involved in iron transport. no signal peptide. no TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical periplasmic binding protein;protein_id=CAL93004.1;transl_table=11
AM406670.1	EMBL	gene	414428	414877	.	-	.	ID=gene391;Name=azo0388;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0388
AM406670.1	EMBL	CDS	414428	414877	.	-	0	ID=cds386;Parent=gene391;Dbxref=EnsemblGenomes-Gn:azo0388,EnsemblGenomes-Tr:CAL93005,InterPro:IPR002716,InterPro:IPR002850,InterPro:IPR029060,UniProtKB/TrEMBL:A1K2F0,NCBI_GP:CAL93005.1;Name=CAL93005.1;Note=Conserved hypothetical protein. Homology to ebA3626 of Azoarcus sp. EbN1 of 59%25 (gnl|keqq|eba:ebA3626(KEGG)). InterPro: Protein of unknown function DUF132 InterPro:IPR002850%3B DUF132. IPR002716%3B PIN. IPR006596%3B PINc. Pfam:PF01850%3B PIN%3B SMART:SM00670%3B PINc%3B TIGRFAMs:TIGR00305%3B DUF132 TIGR00305: conserved hypothetical protein T. Non-secretory protein with very low signalpeptide probability (0.003) (Signal P predicted). Absence of transmembrane helices;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93005.1;transl_table=11
AM406670.1	EMBL	gene	414946	416775	.	-	.	ID=gene392;Name=phbC1;gbkey=Gene;gene=phbC1;gene_biotype=protein_coding;locus_tag=azo0389
AM406670.1	EMBL	CDS	414946	416775	.	-	0	ID=cds387;Parent=gene392;Dbxref=EnsemblGenomes-Gn:azo0389,EnsemblGenomes-Tr:CAL93006,GOA:A1K2F1,InterPro:IPR000073,InterPro:IPR010941,InterPro:IPR010963,InterPro:IPR029058,UniProtKB/TrEMBL:A1K2F1,NCBI_GP:CAL93006.1;Name=CAL93006.1;Note=Function:-Polymerizes d(-)-3-hydroxybutyryl-CoA to create PHB which consists of thousands of hydroxybutyrate molecules linked end to end. PHB serves as an intracellular energy reserve material when cells grow under conditions of nutrient limitation. Entry name TREMBL:Q8KXD5 Prim. accession # Q8KXD5 Identities %3D 354/607 (58%25) InterPro IPR000073%3B A/b_hydrolase. IPR010941%3B PhaC_N. Pfam PF00561%3B Abhydrolase_1%3B 1. PF07167%3B PhaC_N%3B 1. Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=phbC1;product=probable poly-beta-hydroxybutyrate synthase;protein_id=CAL93006.1;transl_table=11
AM406670.1	EMBL	gene	416816	417844	.	-	.	ID=gene393;Name=azo0390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0390
AM406670.1	EMBL	CDS	416816	417844	.	-	0	ID=cds388;Parent=gene393;Dbxref=EnsemblGenomes-Gn:azo0390,EnsemblGenomes-Tr:CAL93007,InterPro:IPR001279,UniProtKB/TrEMBL:A1K2F2,NCBI_GP:CAL93007.1;Name=CAL93007.1;Note=conserved hypothetical protein. TREMBL:Q8Y2Q4-47%25 identity%2C 61%25 similarity. Pfam: Lactamase_B%2Caminotransferase III%2C AP2 domain. TMHMM predicted transmembrane helices.%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93007.1;transl_table=11
AM406670.1	EMBL	gene	417987	418430	.	+	.	ID=gene394;Name=azo0391;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0391
AM406670.1	EMBL	CDS	417987	418430	.	+	0	ID=cds389;Parent=gene394;Dbxref=EnsemblGenomes-Gn:azo0391,EnsemblGenomes-Tr:CAL93008,GOA:A1K2F3,InterPro:IPR000551,InterPro:IPR009061,UniProtKB/TrEMBL:A1K2F3,NCBI_GP:CAL93008.1;Name=CAL93008.1;Note=Putative MerR-family transcriptional regulator%2Ccopper efflux regulator / copper export regulator) InterPro: IPR000551 HTH_MerR. HTH reporting nucleic acid binding motif.%3B~Family membership;gbkey=CDS;product=putative MerR-family transcriptional regulator;protein_id=CAL93008.1;transl_table=11
AM406670.1	EMBL	gene	418560	419027	.	+	.	ID=gene395;Name=azo0392;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0392
AM406670.1	EMBL	CDS	418560	419027	.	+	0	ID=cds390;Parent=gene395;Dbxref=EnsemblGenomes-Gn:azo0392,EnsemblGenomes-Tr:CAL93009,InterPro:IPR003736,InterPro:IPR006683,InterPro:IPR029069,UniProtKB/TrEMBL:A1K2F4,NCBI_GP:CAL93009.1;Name=CAL93009.1;Note=Similar to TREMBL:Q8YBL0 (47%25 identity)%3B TREMBL:Q987R7 (50%25 identity)%3B TREMBL:Q7WA35 (55%25 identity). InterPro (IPR003736): Phenylacetic acid degradation-related protein. Pfam (DUF157): Uncharacterized protein PaaI%2C COG2050.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93009.1;transl_table=11
AM406670.1	EMBL	gene	419104	420315	.	+	.	ID=gene396;Name=fadAx;gbkey=Gene;gene=fadAx;gene_biotype=protein_coding;locus_tag=azo0393
AM406670.1	EMBL	CDS	419104	420315	.	+	0	ID=cds391;Parent=gene396;Dbxref=EnsemblGenomes-Gn:azo0393,EnsemblGenomes-Tr:CAL93010,GOA:A1K2F5,InterPro:IPR002155,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR020610,InterPro:IPR020616,InterPro:IPR020617,UniProtKB/TrEMBL:A1K2F5,NCBI_GP:CAL93010.1;Name=CAL93010.1;Note=Probable acyl-CoA thiolase. Homology to fadAx of P. putida of 67%25 (gnl|keqq|ppu:PP2215(KEGG)). IPR002155%3B Thiolase. Pfam PF02803%3B Thiolase_C%3B 1. PF00108%3B Thiolase_N%3B 1. Two different types of thiolase are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (EC:2.3.1.9) and 3-ketoacyl-CoA thiolase (EC:2.3.1.16). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid -oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly -hydroxybutyrate synthesis or steroid biogenesis.Prediction: Non-secretory protein Signal peptide probability: 0.002 Number of predicted TMHs: 0%3B~Specificity unclear;gbkey=CDS;gene=fadAx;product=probable acyl-CoA thiolase;protein_id=CAL93010.1;transl_table=11
AM406670.1	EMBL	gene	420508	421641	.	+	.	ID=gene397;Name=fadfX;gbkey=Gene;gene=fadfX;gene_biotype=protein_coding;locus_tag=azo0394
AM406670.1	EMBL	CDS	420508	421641	.	+	0	ID=cds392;Parent=gene397;Dbxref=EnsemblGenomes-Gn:azo0394,EnsemblGenomes-Tr:CAL93011,GOA:A1K2F6,InterPro:IPR006089,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR013786,UniProtKB/TrEMBL:A1K2F6,NCBI_GP:CAL93011.1;Name=CAL93011.1;Note=Activity:- Catalysis of the reaction: acyl-CoA + acceptor %3D 2%2C3-dehydroacyl-CoA + reduced acceptor. Entry name TREMBL:Q9AHX9 Prim. accession # Q9AHX9 InterPro IPR006089%3B Acyl-CoA_dh. IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR006092%3B Acyl-CoA_dh_N. IPR009075%3B AcylCoADH_C_like. IPR009100%3B AcylCoA_dehyd_NM. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. PF02771%3B Acyl-CoA_dh_N%3B 1. Identities %3D 244/375 (65%25) Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=fadfX;product=probable acyl-CoA dehydrogenase;protein_id=CAL93011.1;transl_table=11
AM406670.1	EMBL	gene	421777	422394	.	+	.	ID=gene398;Name=azo0395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0395
AM406670.1	EMBL	CDS	421777	422394	.	+	0	ID=cds393;Parent=gene398;Dbxref=EnsemblGenomes-Gn:azo0395,EnsemblGenomes-Tr:CAL93012,GOA:A1K2F7,InterPro:IPR001853,InterPro:IPR012336,InterPro:IPR014440,UniProtKB/TrEMBL:A1K2F7,NCBI_GP:CAL93012.1;Name=CAL93012.1;Note=Similar to TREMBL:Q8Y2R2 (42%25 identity)%3B TREMBL:Q7WEK4 (30%25 identity)%3B TREMBL:Q88IW7 (27%25 identity). Pfam (HCCA_isomerase): 2-hydroxychromene-2-carboxylate isomerase.%3B~Family membership;gbkey=CDS;product=2-hydroxychromene-2-carboxylate isomerase family protein;protein_id=CAL93012.1;transl_table=11
AM406670.1	EMBL	gene	422445	422642	.	+	.	ID=gene399;Name=azo0396;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0396
AM406670.1	EMBL	CDS	422445	422642	.	+	0	ID=cds394;Parent=gene399;Dbxref=EnsemblGenomes-Gn:azo0396,EnsemblGenomes-Tr:CAL93013,InterPro:IPR010710,UniProtKB/TrEMBL:A1K2F8,NCBI_GP:CAL93013.1;Name=CAL93013.1;Note=Conserved hypothetical protein. Homology to cc1308 of C. crescentus of 35%25 (trembl|Q9A8P5). Pfam:DUF1289 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93013.1;transl_table=11
AM406670.1	EMBL	gene	422639	422824	.	+	.	ID=gene400;Name=azo0397;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0397
AM406670.1	EMBL	CDS	422639	422824	.	+	0	ID=cds395;Parent=gene400;Dbxref=EnsemblGenomes-Gn:azo0397,EnsemblGenomes-Tr:CAL93014,InterPro:IPR010710,UniProtKB/TrEMBL:A1K2F9,NCBI_GP:CAL93014.1;Name=CAL93014.1;Note=Hypothetical protein%2C 54%25 identity to TrEMBl%3BQ8YGQ7. Has PF06945%2C Protein of unknown function (DUF1289)%3BIPR010710%3BThis family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL93014.1;transl_table=11
AM406670.1	EMBL	gene	422821	423738	.	+	.	ID=gene401;Name=azo0398;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0398
AM406670.1	EMBL	CDS	422821	423738	.	+	0	ID=cds396;Parent=gene401;Dbxref=EnsemblGenomes-Gn:azo0398,EnsemblGenomes-Tr:CAL93015,GOA:A1K2G0,InterPro:IPR001018,InterPro:IPR001279,UniProtKB/TrEMBL:A1K2G0,NCBI_GP:CAL93015.1;Name=CAL93015.1;Note=Probable Hypothetical protein ycbL. TREMBL:Q8Y2S7-43%25 identity%2C57%25 similarity. TIGRFAM:2A0115-Benzoate transport proteins belong to this group. Benzyl alcohol%2Cbenzaldehyde%2C benzoate%2C and anthranilate are metabolized via catechol%2C cis%2Ccis-muconate%2C and the beta-ketoadipate pathway in some bacteria InterPro: Metallo-beta-lactamase superfamily Pfam:Metallo Beta lactamase superfamily%2C Phage lysozyme TMHMM predicted transmembrane heleces ftsZ: cell division protein FtsZ%3B~Function unclear;gbkey=CDS;product=putative beta lactamase;protein_id=CAL93015.1;transl_table=11
AM406670.1	EMBL	gene	423811	424689	.	+	.	ID=gene402;Name=azo0399;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0399
AM406670.1	EMBL	CDS	423811	424689	.	+	0	ID=cds397;Parent=gene402;Dbxref=EnsemblGenomes-Gn:azo0399,EnsemblGenomes-Tr:CAL93016,GOA:A1K2G1,InterPro:IPR005337,InterPro:IPR027417,NCBI_GP:CAL93016.1;Name=CAL93016.1;Note=Hypothetical UPF0042 protein YPO3586/Y0158. SWISPROT:Q82TN5: 6i%25 identity%2C 78%25 similarity This is a family of putative P-loop ATPases. Many of the proteins in this family are hypothetical and kinase activity has been proposed for some family members InterPro:IPR005337%3B UPF0042. Pfam: PF03668%3B ATP_bind_2 No Signal peptide (Signal P predicted) No transmembrane helices (TMHMM predicted) cmk: cytidylate kinase%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93016.1;transl_table=11
AM406670.1	EMBL	gene	424686	425081	.	+	.	ID=gene403;Name=azo0400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0400
AM406670.1	EMBL	CDS	424686	425081	.	+	0	ID=cds398;Parent=gene403;Dbxref=EnsemblGenomes-Gn:azo0400,EnsemblGenomes-Tr:CAL93017,InterPro:IPR024045,UniProtKB/TrEMBL:A1K2G2,NCBI_GP:CAL93017.1;Name=CAL93017.1;Note=Conserved hypothetical membrane protein. Homology to TP1032 of Treponema pallidum of 32%25 (sprot|YA32_TREPA(SRS)). Has PF07009(IPR010739):Protein of unknown function (DUF1312)%3BThis family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown. No singal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93017.1;transl_table=11
AM406670.1	EMBL	gene	425062	425604	.	+	.	ID=gene404;Name=azo0401;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0401
AM406670.1	EMBL	CDS	425062	425604	.	+	0	ID=cds399;Parent=gene404;Dbxref=EnsemblGenomes-Gn:azo0401,EnsemblGenomes-Tr:CAL93018,GOA:A1K2G3,InterPro:IPR010898,InterPro:IPR014535,UniProtKB/TrEMBL:A1K2G3,NCBI_GP:CAL93018.1;Name=CAL93018.1;Note=Heptaprenyl diphosphate synthase component I%2C 23%25 identity (45%25 similarity) to TrEMBL%3BQ896H9. Has PF07456%2CHeptaprenyl diphosphate synthase component I%3BIPR010898%2CHpre_diP_synt_I: This family contains component I of bacterial heptaprenyl diphosphate synthase (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme%2C both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7.;gbkey=CDS;product=heptaprenyl diphosphate synthase component I;protein_id=CAL93018.1;transl_table=11
AM406670.1	EMBL	gene	425612	426709	.	-	.	ID=gene405;Name=cheB1;gbkey=Gene;gene=cheB1;gene_biotype=protein_coding;locus_tag=azo0402
AM406670.1	EMBL	CDS	425612	426709	.	-	0	ID=cds400;Parent=gene405;Dbxref=EnsemblGenomes-Gn:azo0402,EnsemblGenomes-Tr:CAL93019,GOA:A1K2G4,InterPro:IPR000673,InterPro:IPR001789,InterPro:IPR008248,InterPro:IPR011006,UniProtKB/TrEMBL:A1K2G4,NCBI_GP:CAL93019.1;Name=CAL93019.1;Note=Probable protein-glutamate methylesterase%2CCheB_methylest. IPR001789%3B Response_reg. IPR008248%3B RR_chemtxs_CheB. Pfam: PF01339%3B CheB_methylest. PF00072%3B response_reg. SMART: SM00448%3B REC. Chemotaxis response regulator protein-glutamate methylesterase (EC 3.1.1.61). Involved in the modulation of the chemotaxis system%3B catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by cheR (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=cheB1;product=probable protein glutamate-methylesterase;protein_id=CAL93019.1;transl_table=11
AM406670.1	EMBL	gene	426736	427560	.	-	.	ID=gene406;Name=cheR1;gbkey=Gene;gene=cheR1;gene_biotype=protein_coding;locus_tag=azo0403
AM406670.1	EMBL	CDS	426736	427560	.	-	0	ID=cds401;Parent=gene406;Dbxref=EnsemblGenomes-Gn:azo0403,EnsemblGenomes-Tr:CAL93020,GOA:A1K2G5,InterPro:IPR000780,InterPro:IPR022641,InterPro:IPR022642,InterPro:IPR026024,InterPro:IPR029063,UniProtKB/TrEMBL:A1K2G5,NCBI_GP:CAL93020.1;Name=CAL93020.1;Note=Probable chemotaxis protein methyltransferase%2CCheR_Metranf. IPR001601%3B Methyltransf. IPR000051%3B SAM_bind. Pfam: PF01739%3B CheR. PF03705%3B CheR_N. SMART: SM00138%3B MeTrc. Chemotaxis protein methyltransferase (EC 2.1.1.80). METHYLATION OF THE MEMBRANE-BOUND METHYL-ACCEPTING CHEMOTAXIS PROTEINS (MCP) TO FORM GAMMA-GLUTAMYL METHYL ESTER RESIDUES IN MCP.Annotation derived from meta auto annotator.%3B~High confidence in function and specificity;gbkey=CDS;gene=cheR1;product=probable chemotaxis protein methyltransferase;protein_id=CAL93020.1;transl_table=11
AM406670.1	EMBL	gene	427566	428156	.	-	.	ID=gene407;Name=cheD;gbkey=Gene;gene=cheD;gene_biotype=protein_coding;locus_tag=azo0404
AM406670.1	EMBL	CDS	427566	428156	.	-	0	ID=cds402;Parent=gene407;Dbxref=EnsemblGenomes-Gn:azo0404,EnsemblGenomes-Tr:CAL93021,GOA:A1K2G6,InterPro:IPR005659,InterPro:IPR011324,UniProtKB/TrEMBL:A1K2G6,NCBI_GP:CAL93021.1;Name=CAL93021.1;Note=Conserved hypothetical chemotaxis protein CheD. Homology to cheD of S. oneidensis of 41%25 (trembl|Q8EF62). Interpro: CheD (IPR005659). Pfam: CheD (PF03975). This chemotaxis protein stimulates methylation of MCP proteins. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=cheD;product=conserved hypothetical chemotaxis protein CheD;protein_id=CAL93021.1;transl_table=11
AM406670.1	EMBL	gene	428223	428765	.	-	.	ID=gene408;Name=cheW1;gbkey=Gene;gene=cheW1;gene_biotype=protein_coding;locus_tag=azo0405
AM406670.1	EMBL	CDS	428223	428765	.	-	0	ID=cds403;Parent=gene408;Dbxref=EnsemblGenomes-Gn:azo0405,EnsemblGenomes-Tr:CAL93022,GOA:A1K2G7,InterPro:IPR002545,UniProtKB/TrEMBL:A1K2G7,NCBI_GP:CAL93022.1;Name=CAL93022.1;Note=Probable positive regulator of CheA protein activity%2C CheW. Pfam: PF01584%3B CheW. SMART: SM00260%3B CheW. Chemotaxis protein cheW.Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors. It physically bridges chea to the mcps (methyl-accepting chemotaxis proteins) to allow regulated phosphotransfer to cheY and cheB.%3B~High confidence in function and specificity;gbkey=CDS;gene=cheW1;product=probable positive regulator of CheA protein activity;protein_id=CAL93022.1;transl_table=11
AM406670.1	EMBL	gene	428787	431225	.	-	.	ID=gene409;Name=azo0406;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0406
AM406670.1	EMBL	CDS	428787	431225	.	-	0	ID=cds404;Parent=gene409;Dbxref=EnsemblGenomes-Gn:azo0406,EnsemblGenomes-Tr:CAL93023,GOA:A1K2G8,InterPro:IPR003660,InterPro:IPR004010,InterPro:IPR004089,UniProtKB/TrEMBL:A1K2G8,NCBI_GP:CAL93023.1;Name=CAL93023.1;Note=Methyl-accepting chemotaxis protein%2C only very low similarity to SWISSPROT: sprot|Y4FA_RHISN (14%25 Rhizobium sp. (strain NGR234). InterPro: IPR004090%3B Me_chemotaxis. IPR004089%3B Chmtaxis_transd. IPR003660%3B HAMP. Pfam: PF00672%3B HAMP. PF00015%3B MCPsignal. SMART: SM00304%3B HAMP. SM00283%3B MA. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.%3B~Family membership;gbkey=CDS;product=putative methyl-accepting chemotaxis protein;protein_id=CAL93023.1;transl_table=11
AM406670.1	EMBL	gene	431253	433700	.	-	.	ID=gene410;Name=azo0407;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0407
AM406670.1	EMBL	CDS	431253	433700	.	-	0	ID=cds405;Parent=gene410;Dbxref=EnsemblGenomes-Gn:azo0407,EnsemblGenomes-Tr:CAL93024,GOA:A1K2G9,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR024478,UniProtKB/TrEMBL:A1K2G9,NCBI_GP:CAL93024.1;Name=CAL93024.1;Note=Methyl-accepting chemotaxis protein%2C only very low similarity to SWISSPROT: sprot|Y4FA_RHISN (14%25 Rhizobium sp. (strain NGR234). InterPro: IPR004090%3B Me_chemotaxis. IPR004089%3B Chmtaxis_transd. IPR003660%3B HAMP. Pfam: PF00672%3B HAMP. PF00015%3B MCPsignal. SMART: SM00304%3B HAMP. SM00283%3B MA. Signal P reporting signal peptide. TMHMM reporting 1 transmembrane helices.%3B~Family membership;gbkey=CDS;product=putative methyl-accepting chemotaxis protein;protein_id=CAL93024.1;transl_table=11
AM406670.1	EMBL	gene	433738	435933	.	-	.	ID=gene411;Name=cheA1;gbkey=Gene;gene=cheA1;gene_biotype=protein_coding;locus_tag=azo0408
AM406670.1	EMBL	CDS	433738	435933	.	-	0	ID=cds406;Parent=gene411;Dbxref=EnsemblGenomes-Gn:azo0408,EnsemblGenomes-Tr:CAL93025,GOA:A1K2H0,InterPro:IPR002545,InterPro:IPR003594,InterPro:IPR004105,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,UniProtKB/TrEMBL:A1K2H0,NCBI_GP:CAL93025.1;Name=CAL93025.1;Note=Putative chemotaxis histidine kinase protein%2CATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR002545%3B CheW. IPR004105%3B H-kinase_dim. IPR005467%3B His_kinase. IPR008207%3B Hpt. IPR008208%3B Hpt_N. Pfam: PF01584%3B CheW. PF02895%3B H-kinase_dim. PF02518%3B HATPase_c. PF01627%3B Hpt. SMART: SM00260%3B CheW. SM00387%3B HATPase_c. SM00073%3B HPT. Chemotaxis protein cheA (EC 2.7.3.-). INVOLVED IN THE TRANSMISSION OF SENSORY SIGNALS FROM THE CHEMORECEPTORS TO THE FLAGELLAR MOTORS. CHEA IS AUTOPHOSPHORYLATED%3B IT CAN TRANSFER ITS PHOSPHATE GROUP TO EITHER CHEB OR CHEY.%3B~High confidence in function and specificity;gbkey=CDS;gene=cheA1;product=putative chemotaxis protein histidine kinase;protein_id=CAL93025.1;transl_table=11
AM406670.1	EMBL	gene	435947	436255	.	-	.	ID=gene412;Name=azo0409;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0409
AM406670.1	EMBL	CDS	435947	436255	.	-	0	ID=cds407;Parent=gene412;Dbxref=EnsemblGenomes-Gn:azo0409,EnsemblGenomes-Tr:CAL93026,InterPro:IPR002645,UniProtKB/TrEMBL:A1K2H1,NCBI_GP:CAL93026.1;Name=CAL93026.1;Note=Putative anti-sigma factor antagonists (STAS domain protein)%2C STAS. Pfam: PF01740%3B STAS. The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.%3B~Function unclear;gbkey=CDS;product=putative STAS domain protein;protein_id=CAL93026.1;transl_table=11
AM406670.1	EMBL	gene	436258	437526	.	-	.	ID=gene413;Name=azo0410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0410
AM406670.1	EMBL	CDS	436258	437526	.	-	0	ID=cds408;Parent=gene413;Dbxref=EnsemblGenomes-Gn:azo0410,EnsemblGenomes-Tr:CAL93027,GOA:A1K2H2,InterPro:IPR004089,UniProtKB/TrEMBL:A1K2H2,NCBI_GP:CAL93027.1;Name=CAL93027.1;Note=Putative methyl-accepting chemotaxis protein%2CChmtaxis_transd. Pfam: PF00015%3B MCPsignal. SMART: SM00283%3B MA. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.%3B~Function unclear;gbkey=CDS;product=putative methyl-accepting chemotaxis protein;protein_id=CAL93027.1;transl_table=11
AM406670.1	EMBL	gene	437534	437899	.	-	.	ID=gene414;Name=cheY1;gbkey=Gene;gene=cheY1;gene_biotype=protein_coding;locus_tag=azo0411
AM406670.1	EMBL	CDS	437534	437899	.	-	0	ID=cds409;Parent=gene414;Dbxref=EnsemblGenomes-Gn:azo0411,EnsemblGenomes-Tr:CAL93028,GOA:A1K2H3,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1K2H3,NCBI_GP:CAL93028.1;Name=CAL93028.1;Note=Probable chemotaxis response regulator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=cheY1;product=probable chemotaxis response regulator;protein_id=CAL93028.1;transl_table=11
AM406670.1	EMBL	gene	438216	438288	.	-	.	ID=gene415;Name=tRNA-Lys;gbkey=Gene;gene=tRNA-Lys;gene_biotype=tRNA;locus_tag=azo_tRNA_0004
AM406670.1	EMBL	tRNA	438216	438288	.	-	.	ID=rna5;Parent=gene415;anticodon=(pos:complement(438253..438255));gbkey=tRNA;gene=tRNA-Lys;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Lys
AM406670.1	EMBL	exon	438216	438288	.	-	.	ID=id6;Parent=rna5;anticodon=(pos:complement(438253..438255));gbkey=tRNA;gene=tRNA-Lys;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Lys
AM406670.1	EMBL	gene	438349	439440	.	-	.	ID=gene416;Name=azo0412;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0412
AM406670.1	EMBL	CDS	438349	439440	.	-	0	ID=cds410;Parent=gene416;Dbxref=EnsemblGenomes-Gn:azo0412,EnsemblGenomes-Tr:CAL93029,InterPro:IPR007272,UniProtKB/TrEMBL:A1K2H4,NCBI_GP:CAL93029.1;Name=CAL93029.1;Note=Conserved hypothetical membrane protein. Homology to rsc0739 of R. solanacearum of 52%25 (trembl|Q8Y1F1). Pfam: DUF395 This family includes YeeE and YedE from E. coli. These proteins are integral membrane proteins of unknown function. Many of these proteins contain two homologous regions that are represented by this family. This region contains several conserved glycines and an invariant cysteine that is probably an important functional residue. signal peptide 8 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93029.1;transl_table=11
AM406670.1	EMBL	gene	439455	440141	.	-	.	ID=gene417;Name=exsB;gbkey=Gene;gene=exsB;gene_biotype=protein_coding;locus_tag=azo0413
AM406670.1	EMBL	CDS	439455	440141	.	-	0	ID=cds411;Parent=gene417;Dbxref=EnsemblGenomes-Gn:azo0413,EnsemblGenomes-Tr:CAL93030,GOA:A1K2H5,InterPro:IPR014729,InterPro:IPR018317,NCBI_GP:CAL93030.1;Name=CAL93030.1;Note=Conserved hypothetical ExsB protein. Homology to exsB of P. syringae of 70%25 (trembl|Q87Y44). This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti%2C a species in which the exo genes make succinoglycan%2C a symbiotically important exopolysaccharide%2C exsB is located nearby and affects succinoglycan levels%2C probably through polar effects on exsA expression or the same polycistronic mRNA. Interpro: ExsB (IPR004479). Pfam: ExsB (PF06508). Tigrfam: TIGR00364: exsB protein. Has signal peptide present. No TMHs%3B~Family membership;gbkey=CDS;gene=exsB;product=conserved hypothetical ExsB protein;protein_id=CAL93030.1;transl_table=11
AM406670.1	EMBL	gene	440170	440832	.	-	.	ID=gene418;Name=azo0414;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0414
AM406670.1	EMBL	CDS	440170	440832	.	-	0	ID=cds412;Parent=gene418;Dbxref=EnsemblGenomes-Gn:azo0414,EnsemblGenomes-Tr:CAL93031,GOA:A1K2H6,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR024924,InterPro:IPR027621,UniProtKB/TrEMBL:A1K2H6,NCBI_GP:CAL93031.1;Name=CAL93031.1;Note=Conserved hypothetical radical activating enzyme. Homology to xac3139 of X. axonopodis of 60%25 (trembl|Q8PHW0). InterPro: Radical activating enzymes (IPR001989) Pfam: Radical activating enzyme no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical radical activating enzyme;protein_id=CAL93031.1;transl_table=11
AM406670.1	EMBL	gene	440843	441562	.	-	.	ID=gene419;Name=azo0415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0415
AM406670.1	EMBL	CDS	440843	441562	.	-	0	ID=cds413;Parent=gene419;Dbxref=EnsemblGenomes-Gn:azo0415,EnsemblGenomes-Tr:CAL93032,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR014162,InterPro:IPR019734,UniProtKB/TrEMBL:A1K2H7,NCBI_GP:CAL93032.1;Name=CAL93032.1;Note=Conserved hypothetical secreted protein. Homology to RS05116 of R.solanacearum of 38%25 (trembl|Q8Y1F3(SRS)) No domains predicted. No TMHs Has signal peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93032.1;transl_table=11
AM406670.1	EMBL	gene	441562	442080	.	-	.	ID=gene420;Name=pal;gbkey=Gene;gene=pal;gene_biotype=protein_coding;locus_tag=azo0416
AM406670.1	EMBL	CDS	441562	442080	.	-	0	ID=cds414;Parent=gene420;Dbxref=EnsemblGenomes-Gn:azo0416,EnsemblGenomes-Tr:CAL93033,GOA:A1K2H8,InterPro:IPR006664,InterPro:IPR006665,InterPro:IPR014169,UniProtKB/TrEMBL:A1K2H8,NCBI_GP:CAL93033.1;Name=CAL93033.1;Note=Putative peptidoglycan-associated lipoprotein. Homology to pal of E. coli of 36%25 (sprot|PAL_ECOLI). Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan. Pfam: ompA family signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=pal;product=putative peptidoglycan-associated lipoprotein;protein_id=CAL93033.1;transl_table=11
AM406670.1	EMBL	gene	442120	443403	.	-	.	ID=gene421;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=azo0417
AM406670.1	EMBL	CDS	442120	443403	.	-	0	ID=cds415;Parent=gene421;Dbxref=EnsemblGenomes-Gn:azo0417,EnsemblGenomes-Tr:CAL93034,GOA:A1K2H9,InterPro:IPR007195,InterPro:IPR011659,InterPro:IPR014167,InterPro:IPR015943,NCBI_GP:CAL93034.1;Name=CAL93034.1;Note=Putativ translocation protein tolB. Homology to tolB of P. aeruginosa of 39%25 Involved in the tonB-independent uptake of proteins. signal peptide probable 1 TMH (unusual for TolB)%3B~High confidence in function and specificity;gbkey=CDS;gene=tolB;product=putative translocation protein TolB;protein_id=CAL93034.1;transl_table=11
AM406670.1	EMBL	gene	443450	444292	.	-	.	ID=gene422;Name=tolA;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=azo0418
AM406670.1	EMBL	CDS	443450	444292	.	-	0	ID=cds416;Parent=gene422;Dbxref=EnsemblGenomes-Gn:azo0418,EnsemblGenomes-Tr:CAL93035,GOA:A1K2I0,InterPro:IPR006260,UniProtKB/TrEMBL:A1K2I0,NCBI_GP:CAL93035.1;Name=CAL93035.1;Note=Conserved hypothetical membrane protein. Homology to tolA of N. europaea of 39%25 (trembl|Q82XP0). no domains predicted InterPro: Proline-rich region (IPR000694) no signal peptide 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=tolA;product=conserved hypothetical membrane protein;protein_id=CAL93035.1;transl_table=11
AM406670.1	EMBL	gene	444289	444702	.	-	.	ID=gene423;Name=tolR;gbkey=Gene;gene=tolR;gene_biotype=protein_coding;locus_tag=azo0419
AM406670.1	EMBL	CDS	444289	444702	.	-	0	ID=cds417;Parent=gene423;Dbxref=EnsemblGenomes-Gn:azo0419,EnsemblGenomes-Tr:CAL93036,GOA:A1K2I1,InterPro:IPR003400,UniProtKB/TrEMBL:A1K2I1,NCBI_GP:CAL93036.1;Name=CAL93036.1;Note=Putative translocation protein TolR. Holomology to tolR of P. aeruginosa of 30%25 (sprot|TOLR_PSEAE) Involved in eth TonB-independent uptake of proteins. no signal peptide probable 1 TMH%3B~Family membership;gbkey=CDS;gene=tolR;product=putative translocation protein TolR;protein_id=CAL93036.1;transl_table=11
AM406670.1	EMBL	gene	444721	445395	.	-	.	ID=gene424;Name=tolQ;gbkey=Gene;gene=tolQ;gene_biotype=protein_coding;locus_tag=azo0420
AM406670.1	EMBL	CDS	444721	445395	.	-	0	ID=cds418;Parent=gene424;Dbxref=EnsemblGenomes-Gn:azo0420,EnsemblGenomes-Tr:CAL93037,GOA:A1K2I2,InterPro:IPR002898,InterPro:IPR014163,UniProtKB/TrEMBL:A1K2I2,NCBI_GP:CAL93037.1;Name=CAL93037.1;Note=Translocation protein TolQ. Homology to tolQ of R. solanacearum of 52%25. Involved in the tonB-independent uptake of proteins. InterPro: MotA/TolQ/ExbB proton channel family Pfam: MotA/TolQ/ExbB proton channel family no signal peptide probable 3 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=tolQ;product=translocation protein TolQ;protein_id=CAL93037.1;transl_table=11
AM406670.1	EMBL	gene	445392	445859	.	-	.	ID=gene425;Name=azo0421;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0421
AM406670.1	EMBL	CDS	445392	445859	.	-	0	ID=cds419;Parent=gene425;Dbxref=EnsemblGenomes-Gn:azo0421,EnsemblGenomes-Tr:CAL93038,GOA:A1K2I3,InterPro:IPR006683,InterPro:IPR006684,InterPro:IPR014166,InterPro:IPR029069,UniProtKB/TrEMBL:A1K2I3,NCBI_GP:CAL93038.1;Name=CAL93038.1;Note=Conserved hypothetical thioesterase. Homology to bb4233 of B. bronchiseptica of 41%25 (trembl|Q7WFN8). Tigrfam: TIGR00051: conserved hypothetical protein .Pfam: 4-hydroxybenzol-CoA thioesterase (PF0361). Interpro: 4-hydroxybenzol-CoA thioesterase (IPR006684)%3B thioesterase superfamily (IPR006683) This family contains a wide variety of enzymes%2C principally thioesterases. This family includes 4HBT which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate%2C they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical thioesterase;protein_id=CAL93038.1;transl_table=11
AM406670.1	EMBL	gene	445887	447230	.	+	.	ID=gene426;Name=azo0422;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0422
AM406670.1	EMBL	CDS	445887	447230	.	+	0	ID=cds420;Parent=gene426;Dbxref=EnsemblGenomes-Gn:azo0422,EnsemblGenomes-Tr:CAL93039,InterPro:IPR002645,UniProtKB/TrEMBL:A1K2I4,NCBI_GP:CAL93039.1;Name=CAL93039.1;Note=SPROT:P37718: 26%25 identity%2C 43%25 similarity Cellulose synthase operon protein C precursor. Required for maximal bacterial cellulose synthesis. InterPro: STAS domain. The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. InterPro:IPR008410%3B BCSC_C. IPR003921%3B Cell_synth_C. Pfam:PF05420%3B BCSC_C%3B 1. ant_ant_sig: anti-anti-sigma factor No signal peptide present SignalP predicted). No transmembrane helices present (TMHMM predicted)%3B~Function unclear;gbkey=CDS;product=hypothetical protein;protein_id=CAL93039.1;transl_table=11
AM406670.1	EMBL	gene	447262	447798	.	+	.	ID=gene427;Name=hslV;gbkey=Gene;gene=hslV;gene_biotype=protein_coding;locus_tag=azo0423
AM406670.1	EMBL	CDS	447262	447798	.	+	0	ID=cds421;Parent=gene427;Dbxref=EnsemblGenomes-Gn:azo0423,EnsemblGenomes-Tr:CAL93040,GOA:A1K2I5,InterPro:IPR001353,InterPro:IPR022281,InterPro:IPR023333,InterPro:IPR029055,NCBI_GP:CAL93040.1;Name=CAL93040.1;Note=ATP-dependent protease HslV (EC 3.4.25.-) (Heat shock protein HslV). Homology to hslV of E. coli of 69%25. Protease subunit of a proteasome-like degradation complex. InterPro: Multispecific proteasome proteases (IPR004491) no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hslV;product=ATP-dependent protease HslV;protein_id=CAL93040.1;transl_table=11
AM406670.1	EMBL	gene	447833	449164	.	+	.	ID=gene428;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=azo0424
AM406670.1	EMBL	CDS	447833	449164	.	+	0	ID=cds422;Parent=gene428;Dbxref=EnsemblGenomes-Gn:azo0424,EnsemblGenomes-Tr:CAL93041,GOA:A1K2I6,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004491,InterPro:IPR019489,InterPro:IPR027417,NCBI_GP:CAL93041.1;Name=CAL93041.1;Note=ATP-dependent hsl protease ATP-binding subunit hslU. Homology to hslU of E. coli of 65%25 (sprot|HSLU_ECOLI). Chaperone subunit of a proteasome-like degradation complex (By similarity). InterPro: Heat shock protein HslVU ATPase subunit HslU(IPR004491)%2CAAA ATPase%2Ccentral region (IPR003959)%2C AAA ATPase (IPR003593) Tigrfam: hslU: heat shock protein HslVU ATPas Pfam: ATPase family associated with varius cellular no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hslU;product=ATP-dependent Hsl protease ATP-binding subunit;protein_id=CAL93041.1;transl_table=11
AM406670.1	EMBL	gene	449266	450138	.	+	.	ID=gene429;Name=mdcF1;gbkey=Gene;gene=mdcF1;gene_biotype=protein_coding;locus_tag=azo0425
AM406670.1	EMBL	CDS	449266	450138	.	+	0	ID=cds423;Parent=gene429;Dbxref=EnsemblGenomes-Gn:azo0425,EnsemblGenomes-Tr:CAL93042,GOA:A1K2I7,InterPro:IPR004776,UniProtKB/TrEMBL:A1K2I7,NCBI_GP:CAL93042.1;Name=CAL93042.1;Note=Putative malonate transporter. subcellular location:integral membrane protein (potential). similarity: belongs to the auxin efflux carrier (tc 2.a.69) family. SPROT:P56948:24%25 identity%2C 41%25 similarity. InterPro: IPR004776%3B Auxin_eff. Pfam:PF03547%3B Auxin_eff 2a69: Auxin Efflux Carrier%3B~Specificity unclear;gbkey=CDS;gene=mdcF1;product=putative malonate transporter;protein_id=CAL93042.1;transl_table=11
AM406670.1	EMBL	gene	450142	452085	.	-	.	ID=gene430;Name=azo0426;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0426
AM406670.1	EMBL	CDS	450142	452085	.	-	0	ID=cds424;Parent=gene430;Dbxref=EnsemblGenomes-Gn:azo0426,EnsemblGenomes-Tr:CAL93043,GOA:A1K2I8,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR006189,InterPro:IPR013656,InterPro:IPR029787,UniProtKB/TrEMBL:A1K2I8,NCBI_GP:CAL93043.1;Name=CAL93043.1;Note=GGDEF/PAS-domain containing protein;gbkey=CDS;product=GGDEF/PAS-domain containing protein;protein_id=CAL93043.1;transl_table=11
AM406670.1	EMBL	gene	452338	452742	.	-	.	ID=gene431;Name=hslR;gbkey=Gene;gene=hslR;gene_biotype=protein_coding;locus_tag=azo0427
AM406670.1	EMBL	CDS	452338	452742	.	-	0	ID=cds425;Parent=gene431;Dbxref=EnsemblGenomes-Gn:azo0427,EnsemblGenomes-Tr:CAL93044,GOA:A1K2I9,InterPro:IPR002942,InterPro:IPR025708,UniProtKB/TrEMBL:A1K2I9,NCBI_GP:CAL93044.1;Name=CAL93044.1;Note=Heat shock protein 15 homolog (HSP15). INVOLVED IN THE RECYCLING OF FREE 50S RIBOSOMAL SUBUNITS THAT STILL CARRY A NASCENT CHAIN. BINDS RNA MORE SPECIFICALLY THAN DNA. BINDS WITH VERY HIGH AFFINITY TO THE FREE 50S RIBOSOMAL SUBUNIT. DOES NOT BIND IT WHEN IT IS PART OF THE 70S RIBOSOME%3B~Conserved hypothetical protein;gbkey=CDS;gene=hslR;product=heat shock protein;protein_id=CAL93044.1;transl_table=11
AM406670.1	EMBL	gene	452792	454072	.	-	.	ID=gene432;Name=cysN/C;gbkey=Gene;gene=cysN/C;gene_biotype=protein_coding;locus_tag=azo0428
AM406670.1	EMBL	CDS	452792	454072	.	-	0	ID=cds426;Parent=gene432;Dbxref=EnsemblGenomes-Gn:azo0428,EnsemblGenomes-Tr:CAL93045,GOA:A1K2J0,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR009000,InterPro:IPR009001,InterPro:IPR011779,InterPro:IPR027417,UniProtKB/TrEMBL:A1K2J0,NCBI_GP:CAL93045.1;Name=CAL93045.1;Note=55%25 Adenylylsulfate kinase (EC 2.7.1.25) (APS kinase) (ATP adenosine-5-phosphosulfate 3-phosphotransferase)]%2C from Pseudomonas aeruginosa. FUNCTION:ATP sulfurylase may be the GTPase%2C regulating ATP sulfurylase activity (By similarity). FUNCTION:APS kinase catalyzes the synthesis of activated sulfate (By similarity). CATALYTIC ACTIVITY:ATP + sulfate %3D diphosphate + adenylylsulfate. CATALYTIC ACTIVITY:ATP + adenylylsulfate%3DADP +3'-phosphoadenylylsulfate. PATHWAY: Sulfate activation%3B cysteine biosynthesis reductive branch%3B first step. PATHWAY:Sulfate activation%3B cysteine biosynthesis reductive branch%3B second step. SUBUNIT:Heterodimer composed of cysD%2C the smaller subunit%2Cand cysN (By similarity). SIMILARITY:In the N-terminal section%3B belongs to the GTP-binding elongation factor family. CysN/nodQ subfamily. SIMILARITY:In the C-terminal section%3B Belongs to the APS kinase family. SWISSPROT:CYSN_PSEAE:O50274. InterPro:IPR002891%3BAPS_kinase.IPR004161%3BEFTU_D2.IPR009001%3B Elong_init_C.IPR000795%3B ProtSyn_GTPbind.IPR005225%3B Small_GTP.IPR009000%3B Translat_factor. Pfam:PF01583%3B APS_kinase%3B 1.PF00009%3B GTP_EFTU%3B 1.PF03144%3B GTP_EFTU_D2%3B1. TIGRFAMs:TIGR00455%3B apsK%3B 1.TIGR00231%3B small_GTP%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=cysN/C;product=putative sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase;protein_id=CAL93045.1;transl_table=11
AM406670.1	EMBL	gene	454492	455406	.	-	.	ID=gene433;Name=cysD;gbkey=Gene;gene=cysD;gene_biotype=protein_coding;locus_tag=azo0429
AM406670.1	EMBL	CDS	454492	455406	.	-	0	ID=cds427;Parent=gene433;Dbxref=EnsemblGenomes-Gn:azo0429,EnsemblGenomes-Tr:CAL93046,GOA:A1K2J1,InterPro:IPR002500,InterPro:IPR011784,InterPro:IPR014729,UniProtKB/TrEMBL:A1K2J1,NCBI_GP:CAL93046.1;Name=CAL93046.1;Note=84%25 PAPS_reduct. Pfam:PF01507%3B PAPS_reduct%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=cysD;product=putative sulfate adenylyltransferase subunit 2;protein_id=CAL93046.1;transl_table=11
AM406670.1	EMBL	gene	455534	456304	.	-	.	ID=gene434;Name=cysH;gbkey=Gene;gene=cysH;gene_biotype=protein_coding;locus_tag=azo0430
AM406670.1	EMBL	CDS	455534	456304	.	-	0	ID=cds428;Parent=gene434;Dbxref=EnsemblGenomes-Gn:azo0430,EnsemblGenomes-Tr:CAL93047,GOA:A1K2J2,InterPro:IPR002500,InterPro:IPR004511,InterPro:IPR011798,InterPro:IPR014729,UniProtKB/TrEMBL:A1K2J2,NCBI_GP:CAL93047.1;Name=CAL93047.1;Note=Probabel phosphoadenylyl-sulfate reductase. Homology to csyH of V. sinosum of 55%25 (trembl|Q9L9V0). Phosphoadenosine phosphosulphate reductase (EC: 1.8.4.8) is involved in the assimilation of inorganic sulphate. In a reaction requiring reduced thioredoxin and NADPH%2C it converts 3'-phosphoadenylylsulphate (PAPS) to sulphite and adenosine 3'%2C5' diphosphate (PAP). Interpro: Phosphoadenosine phosphosulfate reductase cysH-type (IPR004511)%3B Phosphoadenosine phophsulfate reductase (IPR002500) Tigrfam: cysH: phosophoadenylyl-sulfate reductase Pfam: Phsphadenosine phosphosulfate reductase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=cysH;product=probable phosphoadenylyl-sulfate reductase;protein_id=CAL93047.1;transl_table=11
AM406670.1	EMBL	gene	456301	456831	.	-	.	ID=gene435;Name=azo0431;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0431
AM406670.1	EMBL	CDS	456301	456831	.	-	0	ID=cds429;Parent=gene435;Dbxref=EnsemblGenomes-Gn:azo0431,EnsemblGenomes-Tr:CAL93048,InterPro:IPR008318,UniProtKB/TrEMBL:A1K2J3,NCBI_GP:CAL93048.1;Name=CAL93048.1;Note=Conserved hypothetical protein. Homology to PA1837 of P.aeruginosa of 50%25 (tremble:Q9I2Q8). Has PF06073%2CBacterial protein of unknown function (DUF934)%3BIPR008318 UCP030820: This family consists of several bacterial proteins of unknown function. One of the members of this family Q8YEW3 is thought to be an oxidoreductase. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93048.1;transl_table=11
AM406670.1	EMBL	gene	456824	458506	.	-	.	ID=gene436;Name=cysI;gbkey=Gene;gene=cysI;gene_biotype=protein_coding;locus_tag=azo0432
AM406670.1	EMBL	CDS	456824	458506	.	-	0	ID=cds430;Parent=gene436;Dbxref=EnsemblGenomes-Gn:azo0432,EnsemblGenomes-Tr:CAL93049,GOA:A1K2J4,InterPro:IPR005117,InterPro:IPR006067,UniProtKB/TrEMBL:A1K2J4,NCBI_GP:CAL93049.1;Name=CAL93049.1;Note=49%25 Fd-NiR.IPR011255%3B NiR_SiRalpha_1/3.IPR006067%3B Nir_Sir_4Fe4S.IPR005117%3B NiR_SiR_beta_fer. Pfam:PF01077%3B NIR_SIR%3B 2.PF03460%3B NIR_SIR_ferr%3B 2.%3B~High confidence in function and specificity;gbkey=CDS;gene=cysI;product=putative sulfite reductase;protein_id=CAL93049.1;transl_table=11
AM406670.1	EMBL	gene	458559	459338	.	-	.	ID=gene437;Name=azo0433;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0433
AM406670.1	EMBL	CDS	458559	459338	.	-	0	ID=cds431;Parent=gene437;Dbxref=EnsemblGenomes-Gn:azo0433,EnsemblGenomes-Tr:CAL93050,GOA:A1K2J5,InterPro:IPR002781,UniProtKB/TrEMBL:A1K2J5,NCBI_GP:CAL93050.1;Name=CAL93050.1;Note=Conserved hypothetical membrane protein. Homology to bll1489 of B. japonicum of 58%25 (trembl|Q89UC8(SRS)) InterPro:IPR002781%3B DUF81. Pfam:PF01925%3B DUF81 Presence of 8 transmembrane helices (TMHMM predicted) probable transmembrane protein of unknown function) no signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93050.1;transl_table=11
AM406670.1	EMBL	gene	459444	460385	.	+	.	ID=gene438;Name=cysB;gbkey=Gene;gene=cysB;gene_biotype=protein_coding;locus_tag=azo0434
AM406670.1	EMBL	CDS	459444	460385	.	+	0	ID=cds432;Parent=gene438;Dbxref=EnsemblGenomes-Gn:azo0434,EnsemblGenomes-Tr:CAL93051,GOA:A1K2J6,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K2J6,NCBI_GP:CAL93051.1;Name=CAL93051.1;Note=HTH-type transcriptional regulator cysB (Cys regulon transcriptional activator). this protein is a positive regulator of gene expression for the cysteine regulon%2C a system of 10 or more loci involved in the biosynthesis of l-cysteine from inorganic sulfate. the inducer for cysb is n-acetylserine. cysb inhibits its own transcription.%3B~High confidence in function and specificity;gbkey=CDS;gene=cysB;product=transcriptional regulator CysB;protein_id=CAL93051.1;transl_table=11
AM406670.1	EMBL	gene	460530	461414	.	+	.	ID=gene439;Name=azo0435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0435
AM406670.1	EMBL	CDS	460530	461414	.	+	0	ID=cds433;Parent=gene439;Dbxref=EnsemblGenomes-Gn:azo0435,EnsemblGenomes-Tr:CAL93052,InterPro:IPR013424,UniProtKB/TrEMBL:A1K2J7,NCBI_GP:CAL93052.1;Name=CAL93052.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. Signal peptide present. No TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93052.1;transl_table=11
AM406670.1	EMBL	gene	461424	462398	.	-	.	ID=gene440;Name=azo0436;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0436
AM406670.1	EMBL	CDS	461424	462398	.	-	0	ID=cds434;Parent=gene440;Dbxref=EnsemblGenomes-Gn:azo0436,EnsemblGenomes-Tr:CAL93053,GOA:A1K2J8,InterPro:IPR006034,InterPro:IPR020827,InterPro:IPR027473,InterPro:IPR027474,InterPro:IPR027475,UniProtKB/TrEMBL:A1K2J8,NCBI_GP:CAL93053.1;Name=CAL93053.1;Note=L-asparaginase precursor (EC 3.5.1.1) (L-asparagine amidohydrolase) (L-ASNase).%3B~Family membership;gbkey=CDS;product=L-asparaginase II precursor;protein_id=CAL93053.1;transl_table=11
AM406670.1	EMBL	gene	462427	463827	.	-	.	ID=gene441;Name=azo0437;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0437
AM406670.1	EMBL	CDS	462427	463827	.	-	0	ID=cds435;Parent=gene441;Dbxref=EnsemblGenomes-Gn:azo0437,EnsemblGenomes-Tr:CAL93054,GOA:A1K2J9,InterPro:IPR000362,InterPro:IPR004708,InterPro:IPR008948,InterPro:IPR018951,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,UniProtKB/TrEMBL:A1K2J9,NCBI_GP:CAL93054.1;Name=CAL93054.1;Note=Region start changed from 463959 to 463827 (-132 bases);gbkey=CDS;product=probable aspartate ammonia-lyase;protein_id=CAL93054.1;transl_table=11
AM406670.1	EMBL	gene	463964	465061	.	-	.	ID=gene442;Name=ansB2;gbkey=Gene;gene=ansB2;gene_biotype=protein_coding;locus_tag=azo0438
AM406670.1	EMBL	CDS	463964	465061	.	-	0	ID=cds436;Parent=gene442;Dbxref=EnsemblGenomes-Gn:azo0438,EnsemblGenomes-Tr:CAL93055,GOA:A1K2K0,InterPro:IPR004550,InterPro:IPR006034,InterPro:IPR020827,InterPro:IPR027473,InterPro:IPR027474,InterPro:IPR027475,UniProtKB/TrEMBL:A1K2K0,NCBI_GP:CAL93055.1;Name=CAL93055.1;Note=L-asparaginase precursor (EC 3.5.1.1) (L-asparagine amidohydrolase) (L-ASNase).%3B~High confidence in function and specificity;gbkey=CDS;gene=ansB2;product=periplasmic L-asparaginase II;protein_id=CAL93055.1;transl_table=11
AM406670.1	EMBL	gene	465187	465915	.	-	.	ID=gene443;Name=glnQ1;gbkey=Gene;gene=glnQ1;gene_biotype=protein_coding;locus_tag=azo0439
AM406670.1	EMBL	CDS	465187	465915	.	-	0	ID=cds437;Parent=gene443;Dbxref=EnsemblGenomes-Gn:azo0439,EnsemblGenomes-Tr:CAL93056,GOA:A1K2K1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K2K1,NCBI_GP:CAL93056.1;Name=CAL93056.1;Note=Glutamine transport ATP-binding protein glnQ. Homology with glnQ of B. stearothermophilus of 56%25 (sprot|GLNQ_BACST). PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR GLUTAMINE. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. InterPro: AAA ATPase superfamily (IPR003593)%2C ABC_transporter (IPR003439)%2C ATP/GTP_binding site motif A (P-loop) (IPR001687) Pfam: ABC transporter no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=glnQ1;product=probable glutamine transport ATP-binding protein;protein_id=CAL93056.1;transl_table=11
AM406670.1	EMBL	gene	465947	466627	.	-	.	ID=gene444;Name=glnM;gbkey=Gene;gene=glnM;gene_biotype=protein_coding;locus_tag=azo0440
AM406670.1	EMBL	CDS	465947	466627	.	-	0	ID=cds438;Parent=gene444;Dbxref=EnsemblGenomes-Gn:azo0440,EnsemblGenomes-Tr:CAL93057,GOA:A1K2K2,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:A1K2K2,NCBI_GP:CAL93057.1;Name=CAL93057.1;Note=Putative glutamine transport permease protein. Homology to glnM of B. subtilis of 30%25 (TREMBL:O34671) Probably part of the binding-protein-dependent transport system of amino acids. Probably responsible for the translocation of the substrate across the membrane InterPro: Binding-protein-dependent transport systems inner membrane component (IPR000515) Pfam: Binding-protein-dependent transport systems inner membrane component no signal peptide probable 5 TMHs%3B~Family membership;gbkey=CDS;gene=glnM;product=putative glutamine transport permease protein;protein_id=CAL93057.1;transl_table=11
AM406670.1	EMBL	gene	466629	467366	.	-	.	ID=gene445;Name=glnP;gbkey=Gene;gene=glnP;gene_biotype=protein_coding;locus_tag=azo0441
AM406670.1	EMBL	CDS	466629	467366	.	-	0	ID=cds439;Parent=gene445;Dbxref=EnsemblGenomes-Gn:azo0441,EnsemblGenomes-Tr:CAL93058,GOA:A1K2K3,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:A1K2K3,NCBI_GP:CAL93058.1;Name=CAL93058.1;Note=Glutamate/aspartate transport system permease protein gltJ. Homology to glnP of B. subtilis of 23%25 (CAA93320). PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR AMINO ACID%3B PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE. InterPro: Binding-protein-dependent transport systems inner membrane component (IPR000515) Pfam: Binding-protein-dependent transport systems inner membrane component HTH-motif probable 4 TMHs no signal peptide%3B~Family membership;gbkey=CDS;gene=glnP;product=putative glutamine transport permease protein;protein_id=CAL93058.1;transl_table=11
AM406670.1	EMBL	gene	467763	468662	.	-	.	ID=gene446;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;locus_tag=azo0442
AM406670.1	EMBL	CDS	467763	468662	.	-	0	ID=cds440;Parent=gene446;Dbxref=EnsemblGenomes-Gn:azo0442,EnsemblGenomes-Tr:CAL93059,GOA:A1K2K4,InterPro:IPR001638,UniProtKB/TrEMBL:A1K2K4,NCBI_GP:CAL93059.1;Name=CAL93059.1;Note=Putative glutamine-binding protein. Homology to glnH of B. stearothermophilus of 28%25 (sprot|GLNH_BACST). Involved in glutamine-transport system. Interacts with the glutamine-transport system glnPQM. Pfam: Bacterial extracellular solute binding protein no TMHs signal peptide%3B~Family membership;gbkey=CDS;gene=glnH;product=putative glutamine-binding protein;protein_id=CAL93059.1;transl_table=11
AM406670.1	EMBL	gene	468959	470002	.	+	.	ID=gene447;Name=azo0443;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0443
AM406670.1	EMBL	CDS	468959	470002	.	+	0	ID=cds441;Parent=gene447;Dbxref=EnsemblGenomes-Gn:azo0443,EnsemblGenomes-Tr:CAL93060,GOA:A1K2K5,InterPro:IPR001279,InterPro:IPR026360,UniProtKB/TrEMBL:A1K2K5,NCBI_GP:CAL93060.1;Name=CAL93060.1;Note=Conserved Hypothetical protein(Metallo-beta-lactamase superfamily). Has PF00753%2C Metallo-beta-lactamase superfamily%3B IPR001279%2C Blactmase-like%3BThese proteins include thiolesterases%2C members of the glyoxalase II family%2C that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.%3B~Family membership;gbkey=CDS;product=beta-lactamase;protein_id=CAL93060.1;transl_table=11
AM406670.1	EMBL	gene	469999	471642	.	+	.	ID=gene448;Name=lig2;gbkey=Gene;gene=lig2;gene_biotype=protein_coding;locus_tag=azo0444
AM406670.1	EMBL	CDS	469999	471642	.	+	0	ID=cds442;Parent=gene448;Dbxref=EnsemblGenomes-Gn:azo0444,EnsemblGenomes-Tr:CAL93061,GOA:A1K2K6,InterPro:IPR012308,InterPro:IPR012309,InterPro:IPR012310,InterPro:IPR012340,InterPro:IPR016059,InterPro:IPR026333,UniProtKB/TrEMBL:A1K2K6,NCBI_GP:CAL93061.1;Name=CAL93061.1;Note=DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]). This protein seals during DNA replication DNA recombination and DNA repair nicks in double-stranded DNA (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=lig2;product=DNA ligase;protein_id=CAL93061.1;transl_table=11
AM406670.1	EMBL	gene	471695	474442	.	+	.	ID=gene449;Name=azo0445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0445
AM406670.1	EMBL	CDS	471695	474442	.	+	0	ID=cds443;Parent=gene449;Dbxref=EnsemblGenomes-Gn:azo0445,EnsemblGenomes-Tr:CAL93062,GOA:A1K2K7,InterPro:IPR001650,InterPro:IPR011545,InterPro:IPR013701,InterPro:IPR014001,InterPro:IPR017170,InterPro:IPR026362,InterPro:IPR027417,UniProtKB/TrEMBL:A1K2K7,NCBI_GP:CAL93062.1;Name=CAL93062.1;Note=Putative ATP-dependent helicase MTH1802. TREMBL:Q88NV1: 57%25 identity%2C 66%25 similarity InterPro:IPR001410%3B DEAD/DEAH box helicase IPR001650%3B Helicase_C. Pfam: PF00270%3B DEAD%3B 1. PF00271%3B Helicase_C%3B 1. SMART: SM00487%3B DEXDc%3B 1. SM00490: HELICc livcs: branched-chain amino acid trans Non secretory protein with low probablity of cleavage site (0.167): Signal P predicted. No transmembrane helices (TMHMM predicted)%3B~High confidence in function and specificity;gbkey=CDS;product=probable ATP-dependent helicase;protein_id=CAL93062.1;transl_table=11
AM406670.1	EMBL	gene	474445	475113	.	+	.	ID=gene450;Name=azo0446;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0446
AM406670.1	EMBL	CDS	474445	475113	.	+	0	ID=cds444;Parent=gene450;Dbxref=EnsemblGenomes-Gn:azo0446,EnsemblGenomes-Tr:CAL93063,GOA:A1K2K8,InterPro:IPR004843,InterPro:IPR024173,InterPro:IPR026336,InterPro:IPR029052,UniProtKB/TrEMBL:A1K2K8,NCBI_GP:CAL93063.1;Name=CAL93063.1;Note=Probable Hypothetical protein MJ0037. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases%2C including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of Escherichia coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal TREMBL:Q88NV2: 46%25 identity%2C 59%25 similarity InterPro:IPR004843%3B M-ppestrase. Pfam: PF00149%3B Metallophos%3B No transmembrane helices TIGR00024: conserved hypothetical prot%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93063.1;transl_table=11
AM406670.1	EMBL	gene	475122	476456	.	-	.	ID=gene451;Name=dctD1;gbkey=Gene;gene=dctD1;gene_biotype=protein_coding;locus_tag=azo0447
AM406670.1	EMBL	CDS	475122	476456	.	-	0	ID=cds445;Parent=gene451;Dbxref=EnsemblGenomes-Gn:azo0447,EnsemblGenomes-Tr:CAL93064,GOA:A1K2K9,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K2K9,NCBI_GP:CAL93064.1;Name=CAL93064.1;Note=C4-dicarboxylate transport transcriptional regulatory protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=dctD1;product=transcriptional regulatory protein;protein_id=CAL93064.1;transl_table=11
AM406670.1	EMBL	gene	476453	478414	.	-	.	ID=gene452;Name=dctB1;gbkey=Gene;gene=dctB1;gene_biotype=protein_coding;locus_tag=azo0448
AM406670.1	EMBL	CDS	476453	478414	.	-	0	ID=cds446;Parent=gene452;Dbxref=EnsemblGenomes-Gn:azo0448,EnsemblGenomes-Tr:CAL93065,GOA:A1K2L0,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR017055,InterPro:IPR029151,UniProtKB/TrEMBL:A1K2L0,NCBI_GP:CAL93065.1;Name=CAL93065.1;Note=C4-dicarboxylate transport sensor protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=dctB1;product=sensor histidine kinase;protein_id=CAL93065.1;transl_table=11
AM406670.1	EMBL	gene	478380	480146	.	-	.	ID=gene453;Name=kefB;gbkey=Gene;gene=kefB;gene_biotype=protein_coding;locus_tag=azo0449
AM406670.1	EMBL	CDS	478380	480146	.	-	0	ID=cds447;Parent=gene453;Dbxref=EnsemblGenomes-Gn:azo0449,EnsemblGenomes-Tr:CAL93066,GOA:A1K2L1,InterPro:IPR003148,InterPro:IPR006153,InterPro:IPR016040,UniProtKB/TrEMBL:A1K2L1,NCBI_GP:CAL93066.1;Name=CAL93066.1;Note=Glutathione-regulated potassium-efflux system protein kefB%2C(K+/H+ antiporter).Transport system that facilitates potassium-efflux possibly by potassium-proton antiport. 32%25 K_eff.IPR006153%3B Na_H_porter.IPR006036%3BTrkA_Kuptake. IPR003148%3B TrkA_N. Pfam:PF00999%3B Na_H_Exchanger%3B 1.PF02254%3B TrkA-N%3B 1. TIGRFAMs:TIGR00932%3B 2a37%3B 1. TMHelix:12. Belongs to the monovalent cation:proton antiporter 2 (cpa2) transporter (TC 2.A.37) family. KefB subfamily.%3B~High confidence in function and specificity;gbkey=CDS;gene=kefB;product=putative glutathione-regulated potassium-efflux system protein;protein_id=CAL93066.1;transl_table=11
AM406670.1	EMBL	gene	480291	482036	.	+	.	ID=gene454;Name=azo0450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0450
AM406670.1	EMBL	CDS	480291	482036	.	+	0	ID=cds448;Parent=gene454;Dbxref=EnsemblGenomes-Gn:azo0450,EnsemblGenomes-Tr:CAL93067,GOA:A1K2L2,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR006189,InterPro:IPR013656,InterPro:IPR029787,UniProtKB/TrEMBL:A1K2L2,NCBI_GP:CAL93067.1;Name=CAL93067.1;Note=PAS/PAC/GGDEF-domain containing protein%2Cimplicating involvement into signalling processes. Similarity to TREMBL: trembl|Q98JA6 (30%25 Rhizobium loti%2Chypothetical protein mlr2027) InterPro: IPR000160 GGDEF. IPR001610 PAC. IPR000700 PAS-assoc_C. IPR000014 PAS_domain. Pfam: PF00990 GGDEF. SMART: SM00086 PAC. SM00091 PAS. TIGRFAM: TIGR00254 GGDEF. TIGR00229 sensory_box.;gbkey=CDS;product=PAS/PAC/GGDEF-domain containing protein;protein_id=CAL93067.1;transl_table=11
AM406670.1	EMBL	gene	482053	482613	.	-	.	ID=gene455;Name=azo0451;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0451
AM406670.1	EMBL	CDS	482053	482613	.	-	0	ID=cds449;Parent=gene455;Dbxref=EnsemblGenomes-Gn:azo0451,EnsemblGenomes-Tr:CAL93068,UniProtKB/TrEMBL:A1K2L3,NCBI_GP:CAL93068.1;Name=CAL93068.1;Note=Hypothetical secreted protein. No homology with hits in the Database. No domains predicted. Signal peptide present. No TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93068.1;transl_table=11
AM406670.1	EMBL	gene	482675	483571	.	-	.	ID=gene456;Name=trxB1;gbkey=Gene;gene=trxB1;gene_biotype=protein_coding;locus_tag=azo0452
AM406670.1	EMBL	CDS	482675	483571	.	-	0	ID=cds450;Parent=gene456;Dbxref=EnsemblGenomes-Gn:azo0452,EnsemblGenomes-Tr:CAL93069,GOA:A1K2L4,InterPro:IPR000103,InterPro:IPR013027,InterPro:IPR023753,UniProtKB/TrEMBL:A1K2L4,NCBI_GP:CAL93069.1;Name=CAL93069.1;Note=Putative thioredoxin reductase. Homology to trxB of S. coelicolor of 25%25 (sprot|TRXB_STRCO). Catalyse the reaction: thioredoxin + nadp(+) %3D thioredoxin disulfide + nadph. InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disulphide oxidoreductase no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=trxB1;product=putative thioredoxin-disulfide reductase;protein_id=CAL93069.1;transl_table=11
AM406670.1	EMBL	gene	483653	485464	.	-	.	ID=gene457;Name=atm1;gbkey=Gene;gene=atm1;gene_biotype=protein_coding;locus_tag=azo0453
AM406670.1	EMBL	CDS	483653	485464	.	-	0	ID=cds451;Parent=gene457;Dbxref=EnsemblGenomes-Gn:azo0453,EnsemblGenomes-Tr:CAL93070,GOA:A1K2L5,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K2L5,NCBI_GP:CAL93070.1;Name=CAL93070.1;Note=Probable composite transport ATP-binding permease protein. Homology to amt1 of S. cereviciae of 48%25 (sprot|ATM1_YEAST). COULD BE INVOLVED IN THE TRANSPORT OF yet unknow substrates (probable HEME) FROM THE MITOCHONDRIA TO THE CYTOSOL. InterPro: ABC transporter transmembrane region (IPR001140)%2C ATP/GTP-binding site motif A (P loop) (IPR001687)%2C ABC transporter (IPR003439)%2CAAA_ATPase sperfamily (IPR003593) Pfam: ATP transporter%2CABC transporter transmembrane region no signal peptide probable 6 TMHs%3B~Specificity unclear;gbkey=CDS;gene=atm1;product=probable composite transport ATP-binding permase protein;protein_id=CAL93070.1;transl_table=11
AM406670.1	EMBL	gene	485487	486122	.	-	.	ID=gene458;Name=azo0454;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0454
AM406670.1	EMBL	CDS	485487	486122	.	-	0	ID=cds452;Parent=gene458;Dbxref=EnsemblGenomes-Gn:azo0454,EnsemblGenomes-Tr:CAL93071,GOA:A1K2L6,InterPro:IPR001123,UniProtKB/TrEMBL:A1K2L6,NCBI_GP:CAL93071.1;Name=CAL93071.1;Note=Conserved hypothetical threonine efflux protein. Homology to rsc0148 of R. solanaxearum of 52%25 (trembl|Q8Y2B8). InterPro: Lysine exporter protein (LYSE/YGGA) (IPR001123) Pfam: LysE type translocator Tigrfam: 2A76: Homoserine/Threonine efflux protein signal peptide Probable 6 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical threonine efflux protein;protein_id=CAL93071.1;transl_table=11
AM406670.1	EMBL	gene	486445	487725	.	+	.	ID=gene459;Name=azo0455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0455
AM406670.1	EMBL	CDS	486445	487725	.	+	0	ID=cds453;Parent=gene459;Dbxref=EnsemblGenomes-Gn:azo0455,EnsemblGenomes-Tr:CAL93072,InterPro:IPR003495,InterPro:IPR011629,InterPro:IPR027417,UniProtKB/TrEMBL:A1K2L7,NCBI_GP:CAL93072.1;Name=CAL93072.1;Note=This family of proteins contains P47K%2C a Pseudomonas chlororaphis protein needed for nitrile hydratase expression%2C and the cobW gene product%2C which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans [1]. TREMBL:Q8YJP6: 40%25 identity%2C 54%25 similarity. Pfam:PF02492%3B Cobalmine synthesis protein%3B pfkB family carbohydrate kinase%3B FAD binding domain. TIGRFAM:proC: pyrroline 5 carboxylate reductase. mobB: molybdopterin-guanine dinucleotide%3B~Family membership;gbkey=CDS;product=putative cobalmin snthesis protein;protein_id=CAL93072.1;transl_table=11
AM406670.1	EMBL	gene	487845	488045	.	+	.	ID=gene460;Name=azo0456;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0456
AM406670.1	EMBL	CDS	487845	488045	.	+	0	ID=cds454;Parent=gene460;Dbxref=EnsemblGenomes-Gn:azo0456,EnsemblGenomes-Tr:CAL93073,UniProtKB/TrEMBL:A1K2L8,NCBI_GP:CAL93073.1;Name=CAL93073.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93073.1;transl_table=11
AM406670.1	EMBL	gene	488198	488884	.	+	.	ID=gene461;Name=ragA;gbkey=Gene;gene=ragA;gene_biotype=protein_coding;locus_tag=azo0457
AM406670.1	EMBL	CDS	488198	488884	.	+	0	ID=cds455;Parent=gene461;Dbxref=EnsemblGenomes-Gn:azo0457,EnsemblGenomes-Tr:CAL93074,GOA:A1K2L9,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:A1K2L9,NCBI_GP:CAL93074.1;Name=CAL93074.1;Note=Response regulator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=ragA;product=two-component response regulator;protein_id=CAL93074.1;transl_table=11
AM406670.1	EMBL	gene	488874	490262	.	+	.	ID=gene462;Name=ragB;gbkey=Gene;gene=ragB;gene_biotype=protein_coding;locus_tag=azo0458
AM406670.1	EMBL	CDS	488874	490262	.	+	0	ID=cds456;Parent=gene462;Dbxref=EnsemblGenomes-Gn:azo0458,EnsemblGenomes-Tr:CAL93075,GOA:A1K2M0,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1K2M0,NCBI_GP:CAL93075.1;Name=CAL93075.1;Note=Putative sensor kinase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=ragB;product=putative two component sensor kinase;protein_id=CAL93075.1;transl_table=11
AM406670.1	EMBL	gene	490448	491650	.	+	.	ID=gene463;Name=amtD;gbkey=Gene;gene=amtD;gene_biotype=protein_coding;locus_tag=azo0459
AM406670.1	EMBL	CDS	490448	491650	.	+	0	ID=cds457;Parent=gene463;Dbxref=EnsemblGenomes-Gn:azo0459,EnsemblGenomes-Tr:CAL93076,GOA:A1K2M1,InterPro:IPR001905,InterPro:IPR018047,InterPro:IPR024041,InterPro:IPR029020,UniProtKB/TrEMBL:A1K2M1,NCBI_GP:CAL93076.1;Name=CAL93076.1;Note=Putative ammonium transporter MJ1343. A number of evolutionarily-related proteins have been found to be involved in the transport of ammonium ions across membranes.Represent a family of high affinity ammonium transporters. These proteins are highly hydrophobic and seem to contain from 10 to 12 transmembrane domain. TREMBL:Q88L29: 73%25 identity%2C 84%25 similarity InterPro: Ammonium transporter family InterPro: IPR001905%3B Ammonium_transpt. IPR010256%3B RH_like_transpt. Pfam: PF00909%3B Ammonium_transp%3B 1. PROSITE: PS01219%3B AMMONIUM_TRANSP amt: ammonium transporter Non secretory protein with signal peptide probability of 0.174 (SignalP predicted) TMHMM predicted 11 TMH's%3B~High confidence in function and specificity;gbkey=CDS;gene=amtD;product=probable ammonia permease;protein_id=CAL93076.1;transl_table=11
AM406670.1	EMBL	gene	491666	492280	.	-	.	ID=gene464;Name=dnr;gbkey=Gene;gene=dnr;gene_biotype=protein_coding;locus_tag=azo0460
AM406670.1	EMBL	CDS	491666	492280	.	-	0	ID=cds458;Parent=gene464;Dbxref=EnsemblGenomes-Gn:azo0460,EnsemblGenomes-Tr:CAL93077,GOA:A1K2M2,InterPro:IPR000595,InterPro:IPR011991,InterPro:IPR014710,InterPro:IPR018490,UniProtKB/TrEMBL:A1K2M2,NCBI_GP:CAL93077.1;Name=CAL93077.1;Note=Putative Dnr-like transcriptional activator. Similar to SWISSPROT: sprot|FIXK_RHIME (28%25 Rhizobium meliloti%2C FixK) InterPro: IPR000595 cNMP_binding. IPR001808 HTH_Crp. Pfam: PF00027 cNMP_binding. HTH reporting nucleic acid binding motif.%3B~Family membership;gbkey=CDS;gene=dnr;product=putative Dnr-like transcriptional activator;protein_id=CAL93077.1;transl_table=11
AM406670.1	EMBL	gene	492369	492854	.	+	.	ID=gene465;Name=azo0461;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0461
AM406670.1	EMBL	CDS	492369	492854	.	+	0	ID=cds459;Parent=gene465;Dbxref=EnsemblGenomes-Gn:azo0461,EnsemblGenomes-Tr:CAL93078,GOA:A1K2M3,InterPro:IPR010980,UniProtKB/TrEMBL:A1K2M3,NCBI_GP:CAL93078.1;Name=CAL93078.1;Note=Hypthetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Has signal peptide.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93078.1;transl_table=11
AM406670.1	EMBL	gene	492897	495704	.	-	.	ID=gene466;Name=azo0462;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0462
AM406670.1	EMBL	CDS	492897	495704	.	-	0	ID=cds460;Parent=gene466;Dbxref=EnsemblGenomes-Gn:azo0462,EnsemblGenomes-Tr:CAL93079,GOA:A1K2M4,InterPro:IPR006179,InterPro:IPR011044,InterPro:IPR015943,InterPro:IPR027372,UniProtKB/TrEMBL:A1K2M4,NCBI_GP:CAL93079.1;Name=CAL93079.1;Note=Conserved hypothetical secreted protein. Homology to an orf of Trichodesmium erythraeum of 45%25 (gi|48892210|ref|ZP_00325608.1|(NBCI ENTREZ)). No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93079.1;transl_table=11
AM406670.1	EMBL	gene	495962	498433	.	+	.	ID=gene467;Name=fadE;gbkey=Gene;gene=fadE;gene_biotype=protein_coding;locus_tag=azo0463
AM406670.1	EMBL	CDS	495962	498433	.	+	0	ID=cds461;Parent=gene467;Dbxref=EnsemblGenomes-Gn:azo0463,EnsemblGenomes-Tr:CAL93080,GOA:A1K2M5,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR013786,InterPro:IPR015396,UniProtKB/TrEMBL:A1K2M5,NCBI_GP:CAL93080.1;Name=CAL93080.1;Note=Probable acyl-CoA dehydrogenase. Homology to fadE of E. coli of 55%25 (trembl|Q8KTJ8(SRS)) Catalyzes the dehydrogenation of acyl-CoA (By similarity). Reaction: acyl-CoA + acceptor %3D 2%2C3-dehydroacyl-CoA + reduced acceptor. InterPro: Acyl-CoA dehydrogenase (IPR006089) Pfam: Acyl-CoA dehydrogenase%2C N-terminal domain%3B Acyl-CoA dehydrogenase%2C C-terminal domain signal peptide 2 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fadE;product=probable acyl-CoA dehydrogenase;protein_id=CAL93080.1;transl_table=11
AM406670.1	EMBL	gene	498430	499902	.	+	.	ID=gene468;Name=fadA1;gbkey=Gene;gene=fadA1;gene_biotype=protein_coding;locus_tag=azo0464
AM406670.1	EMBL	CDS	498430	499902	.	+	0	ID=cds462;Parent=gene468;Dbxref=EnsemblGenomes-Gn:azo0464,EnsemblGenomes-Tr:CAL93081,GOA:A1K2M6,InterPro:IPR002155,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR020610,InterPro:IPR020613,InterPro:IPR020616,InterPro:IPR020617,UniProtKB/TrEMBL:A1K2M6,NCBI_GP:CAL93081.1;Name=CAL93081.1;Note=subunit of fatty acid oxidation complex%2C 3-keto-acyl-coa-thiolase. Activity:-acyl-CoA + acetyl-CoA %3D CoA + 3-oxoacyl-CoA Entry name TREMBL:Q8G967 Prim. accession # Q8G967 Identities %3D 284/425 (66%25) InterPro IPR002155%3B Thiolase. Pfam PF02803%3B Thiolase_C%3B 1. PF00108%3B Thiolase_N%3B 1. Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.000%3B~Family membership;gbkey=CDS;gene=fadA1;product=probable 3-ketoacyl-CoA thiolase;protein_id=CAL93081.1;transl_table=11
AM406670.1	EMBL	gene	499899	501935	.	+	.	ID=gene469;Name=fadB1;gbkey=Gene;gene=fadB1;gene_biotype=protein_coding;locus_tag=azo0465
AM406670.1	EMBL	CDS	499899	501935	.	+	0	ID=cds463;Parent=gene469;Dbxref=EnsemblGenomes-Gn:azo0465,EnsemblGenomes-Tr:CAL93082,GOA:A1K2M7,InterPro:IPR001753,InterPro:IPR006108,InterPro:IPR006176,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR016040,InterPro:IPR029045,UniProtKB/TrEMBL:A1K2M7,NCBI_GP:CAL93082.1;Name=CAL93082.1;Note=alpha-subunit of fatty acid oxidation complex. Entry name TREMBL:Q8G968 Prim. accession # Q8G968 Identities %3D 373/642 (58%25) InterPro IPR006108%3B 3HCDH_C. IPR006176%3B 3HCDH_N. Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0 IPR008927%3B 6DGDH_C_like. IPR001753%3B EnCoA_hydrtse. Pfam PF00725%3B 3HCDH%3B 1. PF02737%3B 3HCDH_N%3B 1. PF00378%3B ECH%3B 1.%3B~Family membership;gbkey=CDS;gene=fadB1;product=probable enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase;protein_id=CAL93082.1;transl_table=11
AM406670.1	EMBL	gene	501932	502336	.	+	.	ID=gene470;Name=azo0466;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0466
AM406670.1	EMBL	CDS	501932	502336	.	+	0	ID=cds464;Parent=gene470;Dbxref=EnsemblGenomes-Gn:azo0466,EnsemblGenomes-Tr:CAL93083,GOA:A1K2M8,InterPro:IPR006683,InterPro:IPR029069,UniProtKB/TrEMBL:A1K2M8,NCBI_GP:CAL93083.1;Name=CAL93083.1;Note=Conserved hypothetical acyl-CoA thioesterase. Homology to an orf of Azoarcus sp. EbN1 (trembl|Q8G9D6). Pfam: cytosolic long-chain acyl-CoA thioesterase Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate%2C they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. Interpro: Thioesterase superfamily (IPR006683) no signal peptide no. TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical acyl-CoA thioesterase;protein_id=CAL93083.1;transl_table=11
AM406670.1	EMBL	gene	502438	503721	.	+	.	ID=gene471;Name=fadL;gbkey=Gene;gene=fadL;gene_biotype=protein_coding;locus_tag=azo0467
AM406670.1	EMBL	CDS	502438	503721	.	+	0	ID=cds465;Parent=gene471;Dbxref=EnsemblGenomes-Gn:azo0467,EnsemblGenomes-Tr:CAL93084,InterPro:IPR005017,UniProtKB/TrEMBL:A1K2M9,NCBI_GP:CAL93084.1;Name=CAL93084.1;Note=Long-chain fatty acid transport protein precursor (Outer membrane fadL protein) (Outer membrane flp protein). Involved in translocation of long-chain fatty acids across the outer membrane. FadL may form a specific channel (By similarity). Entry name:- Q8G9D7 Primary accession number:-Q8G9D7 InterPro:- IPR005017%3B Toluene_X. Pfam:- PF03349%3B Toluene_X%3B 1. identity:- 66%25 Prediction: Signal peptide Signal peptide probability: 1.0 Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=fadL;product=probable long-chain fatty acid transport protein;protein_id=CAL93084.1;transl_table=11
AM406670.1	EMBL	gene	503770	506154	.	+	.	ID=gene472;Name=fadB2;gbkey=Gene;gene=fadB2;gene_biotype=protein_coding;locus_tag=azo0468
AM406670.1	EMBL	CDS	503770	506154	.	+	0	ID=cds466;Parent=gene472;Dbxref=EnsemblGenomes-Gn:azo0468,EnsemblGenomes-Tr:CAL93085,GOA:A1K2N0,InterPro:IPR001753,InterPro:IPR006108,InterPro:IPR006176,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR016040,InterPro:IPR029045,UniProtKB/TrEMBL:A1K2N0,NCBI_GP:CAL93085.1;Name=CAL93085.1;Note=Short-chain enoyl-CoA hydratase activity . Activity:- 3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H2O Entry name TREMBL:Q8P986 Prim. accession # Q8P986 InterPro IPR006108%3B 3HCDH_C. IPR006176%3B 3HCDH_N. IPR008927%3B 6DGDH_C_like. IPR001753%3B EnCoA_hydrtse. IPR000205%3B NAD_BS. Pfam PF00725%3B 3HCDH%3B 1. PF02737%3B 3HCDH_N%3B 1. PF00378%3B ECH%3B 1. Identities %3D 468/796 (58%25) Prediction: Signal peptide Signal peptide probability: 0.980 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=fadB2;product=probable 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase;protein_id=CAL93085.1;transl_table=11
AM406670.1	EMBL	gene	506636	507868	.	+	.	ID=gene473;Name=fadA2;gbkey=Gene;gene=fadA2;gene_biotype=protein_coding;locus_tag=azo0469
AM406670.1	EMBL	CDS	506636	507868	.	+	0	ID=cds467;Parent=gene473;Dbxref=EnsemblGenomes-Gn:azo0469,EnsemblGenomes-Tr:CAL93086,GOA:A1K2N1,InterPro:IPR002155,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR020610,InterPro:IPR020613,InterPro:IPR020615,InterPro:IPR020616,InterPro:IPR020617,UniProtKB/TrEMBL:A1K2N1,NCBI_GP:CAL93086.1;Name=CAL93086.1;Note=Activity:- acyl-CoA + acetyl-CoA %3D CoA + 3-oxoacyl-CoA Entry name:- SWISSPROT:THIK_ECOLI Prim. accession # P21151 InterPro:- IPR002155%3B Thiolase. Pfam:-PF02803%3B Thiolase_C%3B 1. PF00108%3B Thiolase_N%3B 1. Identities %3D 177/400 (44%25) Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=fadA2;product=probable 3-ketoacyl-CoA thiolase;protein_id=CAL93086.1;transl_table=11
AM406670.1	EMBL	gene	507945	508745	.	+	.	ID=gene474;Name=paaG2;gbkey=Gene;gene=paaG2;gene_biotype=protein_coding;locus_tag=azo0470
AM406670.1	EMBL	CDS	507945	508745	.	+	0	ID=cds468;Parent=gene474;Dbxref=EnsemblGenomes-Gn:azo0470,EnsemblGenomes-Tr:CAL93087,GOA:A1K2N2,InterPro:IPR001753,InterPro:IPR029045,UniProtKB/TrEMBL:A1K2N2,NCBI_GP:CAL93087.1;Name=CAL93087.1;Note=Function:- COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). CATALYTIC ACTIVITY:-(3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H(2)O. Entry name SWISSPROT:PAAG_ECOLI Prim. accession # P77467 InterPro:- IPR001753%3B EnCoA_hydrtse. Pfam:-PF00378%3B ECH%3B 1. Identities %3D 92/265 (34%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=paaG2;product=putative enoyl-CoA hydratase;protein_id=CAL93087.1;transl_table=11
AM406670.1	EMBL	gene	508774	509625	.	-	.	ID=gene475;Name=azo0471;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0471
AM406670.1	EMBL	CDS	508774	509625	.	-	0	ID=cds469;Parent=gene475;Dbxref=EnsemblGenomes-Gn:azo0471,EnsemblGenomes-Tr:CAL93088,InterPro:IPR003848,InterPro:IPR014729,UniProtKB/TrEMBL:A1K2N3,NCBI_GP:CAL93088.1;Name=CAL93088.1;Note=Conserved hypothetical membrane protein. Homology to cv1508 of C. violaceum of 37%25 (trembl|Q7NXW8). Pfam: uncharacterized ACR%2C COG1434. no signal peptide. 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93088.1;transl_table=11
AM406670.1	EMBL	gene	509624	510913	.	+	.	ID=gene476;Name=azo0472;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0472
AM406670.1	EMBL	CDS	509624	510913	.	+	0	ID=cds470;Parent=gene476;Dbxref=EnsemblGenomes-Gn:azo0472,EnsemblGenomes-Tr:CAL93089,GOA:A1K2N4,InterPro:IPR000277,InterPro:IPR006235,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K2N4,NCBI_GP:CAL93089.1;Name=CAL93089.1;Note=Probable O-acetylhomoserine aminocarboxypropyltransferase. Homology to cysD of A. nidulans of 54%25 (sprot|CYSD_EMENI). Transforms O-acetylhomoserine into homocysteine. InterPro: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes (IPR000277) Pfam: Cys/Met metabolism PLP-dependent enzymes no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;product=probable O-acetylhomoserine aminocarboxypropyltransferase;protein_id=CAL93089.1;transl_table=11
AM406670.1	EMBL	gene	510910	511497	.	+	.	ID=gene477;Name=azo0473;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0473
AM406670.1	EMBL	CDS	510910	511497	.	+	0	ID=cds471;Parent=gene477;Dbxref=EnsemblGenomes-Gn:azo0473,EnsemblGenomes-Tr:CAL93090,InterPro:IPR021244,UniProtKB/TrEMBL:A1K2N5,NCBI_GP:CAL93090.1;Name=CAL93090.1;Note=Hypothetical membrane protein. No good homology to the data bank. No domains predicted. 1 TMHs No signal peptide present.;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93090.1;transl_table=11
AM406670.1	EMBL	gene	511494	512357	.	+	.	ID=gene478;Name=azo0474;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0474
AM406670.1	EMBL	CDS	511494	512357	.	+	0	ID=cds472;Parent=gene478;Dbxref=EnsemblGenomes-Gn:azo0474,EnsemblGenomes-Tr:CAL93091,InterPro:IPR007730,UniProtKB/TrEMBL:A1K2N6,NCBI_GP:CAL93091.1;Name=CAL93091.1;Note=Exported protein with sporulation related repeat. Pfam: Sporulation related repeat. InterPro: Proline-rich region%3B~Function unclear;gbkey=CDS;product=peptidoglycan-binding protein;protein_id=CAL93091.1;transl_table=11
AM406670.1	EMBL	gene	512441	512881	.	+	.	ID=gene479;Name=azo0475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0475
AM406670.1	EMBL	CDS	512441	512881	.	+	0	ID=cds473;Parent=gene479;Dbxref=EnsemblGenomes-Gn:azo0475,EnsemblGenomes-Tr:CAL93092,GOA:A1K2N7,InterPro:IPR003775,InterPro:IPR024046,NCBI_GP:CAL93092.1;Name=CAL93092.1;Note=Conserved hypothetical protein%2C 35%25 identity to TrEMBL%3BQ8ENH9 Has PF02623%2C Uncharacterized BCR%2C COG1699%3B IPR003775%2C DUF180 :This entry describes proteins of unknown function.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93092.1;transl_table=11
AM406670.1	EMBL	gene	512981	513361	.	+	.	ID=gene480;Name=azo0476;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0476
AM406670.1	EMBL	CDS	512981	513361	.	+	0	ID=cds474;Parent=gene480;Dbxref=EnsemblGenomes-Gn:azo0476,EnsemblGenomes-Tr:CAL93093,GOA:A1K2N8,InterPro:IPR006056,InterPro:IPR006175,InterPro:IPR013813,UniProtKB/TrEMBL:A1K2N8,NCBI_GP:CAL93093.1;Name=CAL93093.1;Note=Conserved hypothetical endoribonuclase L-PSP. Homology to orf1 of A. vineladii of 74%25 (sprot|YVN1_AZOVI(SRS)) This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested. Tigrfam: Endoribonuclease L-PSP%2C putative Pfam: Endoribonuclease L-PSP (%3DYipgF family) no TMHs weak indication for signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical endoribonuclease L-PSP;protein_id=CAL93093.1;transl_table=11
AM406670.1	EMBL	gene	513369	515408	.	+	.	ID=gene481;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;locus_tag=azo0477
AM406670.1	EMBL	CDS	513369	515408	.	+	0	ID=cds475;Parent=gene481;Dbxref=EnsemblGenomes-Gn:azo0477,EnsemblGenomes-Tr:CAL93094,GOA:A1K2N9,InterPro:IPR001650,InterPro:IPR004609,InterPro:IPR011545,InterPro:IPR012340,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:A1K2N9,NCBI_GP:CAL93094.1;Name=CAL93094.1;Note=ATP-dependent DNA helicase recG (EC 3.6.1.-). Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3 to 5 polarity. recG unwind branched duplex DNA (Y-DNA). Has a role in constitutive stable DNA replication (csdR) and R-loop formation (By similarity). InterPro: ATP-dependent DNA helicase RecG recG: ATP-dependent DNA helicase RecG%3B~High confidence in function and specificity;gbkey=CDS;gene=recG;product=ATP-dependent DNA helicase;protein_id=CAL93094.1;transl_table=11
AM406670.1	EMBL	gene	515463	516032	.	+	.	ID=gene482;Name=ubiC;gbkey=Gene;gene=ubiC;gene_biotype=protein_coding;locus_tag=azo0478
AM406670.1	EMBL	CDS	515463	516032	.	+	0	ID=cds476;Parent=gene482;Dbxref=EnsemblGenomes-Gn:azo0478,EnsemblGenomes-Tr:CAL93095,GOA:A1K2P0,InterPro:IPR007440,InterPro:IPR028978,NCBI_GP:CAL93095.1;Name=CAL93095.1;Note=Chorismate:pyruvate lyase (EC 4.-.-.-). catalytic activity: chorismate %3D 4-hydroxybenzoate + pyruvate. pathway: ubiquinone biosynthesis%3B first step.%3B~Specificity unclear;gbkey=CDS;gene=ubiC;product=putative chorismate:pyruvate lyase;protein_id=CAL93095.1;transl_table=11
AM406670.1	EMBL	gene	516019	516882	.	+	.	ID=gene483;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=azo0479
AM406670.1	EMBL	CDS	516019	516882	.	+	0	ID=cds477;Parent=gene483;Dbxref=EnsemblGenomes-Gn:azo0479,EnsemblGenomes-Tr:CAL93096,GOA:A1K2P1,InterPro:IPR000537,InterPro:IPR006370,NCBI_GP:CAL93096.1;Name=CAL93096.1;Note=4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.-) (4-HB polyprenyltransferase). Synthesis of 3-octaprenyl-4-hydroxybenzoate. InterPro: UbiA prenyltransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=ubiA;product=4-hydroxybenzoate octaprenyltransferase;protein_id=CAL93096.1;transl_table=11
AM406670.1	EMBL	gene	516980	520849	.	-	.	ID=gene484;Name=azo0480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0480
AM406670.1	EMBL	CDS	516980	520849	.	-	0	ID=cds478;Parent=gene484;Dbxref=EnsemblGenomes-Gn:azo0480,EnsemblGenomes-Tr:CAL93097,GOA:A1K2P2,InterPro:IPR004017,InterPro:IPR004113,InterPro:IPR006094,InterPro:IPR009051,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR021817,InterPro:IPR022153,UniProtKB/TrEMBL:A1K2P2,NCBI_GP:CAL93097.1;Name=CAL93097.1;Note=Conserved hypothetical irons-sulfur binding oxidase. Homology to cv4235 of C. violaceum of 70%25 (trembl|Q7NQA5) Pfam: FAD binding domain%3B FAD linked oxidase%2C Cterminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical iron-sulfur binding oxidase;protein_id=CAL93097.1;transl_table=11
AM406670.1	EMBL	gene	520972	521325	.	-	.	ID=gene485;Name=azo0481;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0481
AM406670.1	EMBL	CDS	520972	521325	.	-	0	ID=cds479;Parent=gene485;Dbxref=EnsemblGenomes-Gn:azo0481,EnsemblGenomes-Tr:CAL93098,InterPro:IPR006175,InterPro:IPR013813,InterPro:IPR019897,UniProtKB/TrEMBL:A1K2P3,NCBI_GP:CAL93098.1;Name=CAL93098.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93098.1;transl_table=11
AM406670.1	EMBL	gene	521370	521783	.	-	.	ID=gene486;Name=azo0482;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0482
AM406670.1	EMBL	CDS	521370	521783	.	-	0	ID=cds480;Parent=gene486;Dbxref=EnsemblGenomes-Gn:azo0482,EnsemblGenomes-Tr:CAL93099,UniProtKB/TrEMBL:A1K2P4,NCBI_GP:CAL93099.1;Name=CAL93099.1;Note=Conserved hypothetical membrane protein. Homology to yqaA of Nitrosomonas europaea of 50%25 (trembl|Q82TH7(SRS)) No domains predicted. Signal peptide present. TMHMM2 reporting presence of 2 TMH's.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93099.1;transl_table=11
AM406670.1	EMBL	gene	521919	522353	.	+	.	ID=gene487;Name=azo0483;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0483
AM406670.1	EMBL	CDS	521919	522353	.	+	0	ID=cds481;Parent=gene487;Dbxref=EnsemblGenomes-Gn:azo0483,EnsemblGenomes-Tr:CAL93100,InterPro:IPR011690,UniProtKB/TrEMBL:A1K2P5,NCBI_GP:CAL93100.1;Name=CAL93100.1;Note=Conserved hypothetical secreted protein. Homology to PA4874 of P.aeruginosa of 36%25 (trembl|Q9HUT9(SRS)) No domains predicted. Signal petide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93100.1;transl_table=11
AM406670.1	EMBL	gene	522433	523299	.	-	.	ID=gene488;Name=azo0484;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0484
AM406670.1	EMBL	CDS	522433	523299	.	-	0	ID=cds482;Parent=gene488;Dbxref=EnsemblGenomes-Gn:azo0484,EnsemblGenomes-Tr:CAL93101,GOA:A1K2P6,InterPro:IPR000253,InterPro:IPR001054,InterPro:IPR008984,InterPro:IPR029787,UniProtKB/TrEMBL:A1K2P6,NCBI_GP:CAL93101.1;Name=CAL93101.1;Note=FHA domain containing protein. Best similarity to SWISSPROT: sprot|REPB_AGRRH (9%25 Agrobacterium rhizogenes%2Cpossible replication protein b) Pfam: PF00211 Adenylate and Guanylate cyclase catalytic domain. SMART: SM00240 FHA Forkhead associated domain.;gbkey=CDS;product=FHA domain containing protein;protein_id=CAL93101.1;transl_table=11
AM406670.1	EMBL	gene	523396	524316	.	-	.	ID=gene489;Name=azo0485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0485
AM406670.1	EMBL	CDS	523396	524316	.	-	0	ID=cds483;Parent=gene489;Dbxref=EnsemblGenomes-Gn:azo0485,EnsemblGenomes-Tr:CAL93102,GOA:A1K2P7,InterPro:IPR011063,InterPro:IPR012089,InterPro:IPR014729,NCBI_GP:CAL93102.1;Name=CAL93102.1;Note=Homology to hypothetical protein ydaO. InterPro: Uncharacterized protein family UPF0021;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93102.1;transl_table=11
AM406670.1	EMBL	gene	524389	525135	.	-	.	ID=gene490;Name=azo0486;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0486
AM406670.1	EMBL	CDS	524389	525135	.	-	0	ID=cds484;Parent=gene490;Dbxref=EnsemblGenomes-Gn:azo0486,EnsemblGenomes-Tr:CAL93103,GOA:A1K2P8,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K2P8,NCBI_GP:CAL93103.1;Name=CAL93103.1;Note=Conserved hypothetical short-chain dehydrogenase. Homology to cv4132 of C. violaceum of 60%25 (trembl:Q7NQK5). Pfam: short-chain dehydorgenase (PF00106). no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical short-chain dehydrogenase;protein_id=CAL93103.1;transl_table=11
AM406670.1	EMBL	gene	525247	526419	.	+	.	ID=gene491;Name=azo0487;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0487
AM406670.1	EMBL	CDS	525247	526419	.	+	0	ID=cds485;Parent=gene491;Dbxref=EnsemblGenomes-Gn:azo0487,EnsemblGenomes-Tr:CAL93104,InterPro:IPR003788,InterPro:IPR029063,UniProtKB/TrEMBL:A1K2P9,NCBI_GP:CAL93104.1;Name=CAL93104.1;Note=Conserved hypothetical protein. Homology to NE1166 of N.europaea of 49%25 (tremble:Q82VC8) Has PF02636%2CUncharacterized ACR%2C COG1565%3BIPR003788 %2CDUF185%3B This family contains several uncharacterised proteins. Q8YI87 has been described as an ATP synthase beta subunit transcription termination factor rho protein. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93104.1;transl_table=11
AM406670.1	EMBL	gene	526459	526677	.	-	.	ID=gene492;Name=azo0488;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0488
AM406670.1	EMBL	CDS	526459	526677	.	-	0	ID=cds486;Parent=gene492;Dbxref=EnsemblGenomes-Gn:azo0488,EnsemblGenomes-Tr:CAL93105,UniProtKB/TrEMBL:A1K2Q0,NCBI_GP:CAL93105.1;Name=CAL93105.1;Note=Conserved hypothetical protein. Homology to ebA3372 of Azoarcus sp. EbN1 of 47%25 (gnl|keqq|eba:ebA3372(KEGG)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93105.1;transl_table=11
AM406670.1	EMBL	gene	526664	526792	.	+	.	ID=gene493;Name=azo0489;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0489
AM406670.1	EMBL	CDS	526664	526792	.	+	0	ID=cds487;Parent=gene493;Dbxref=EnsemblGenomes-Gn:azo0489,EnsemblGenomes-Tr:CAL93106,UniProtKB/TrEMBL:A1K2Q1,NCBI_GP:CAL93106.1;Name=CAL93106.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93106.1;transl_table=11
AM406670.1	EMBL	gene	526887	527693	.	-	.	ID=gene494;Name=azo0490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0490
AM406670.1	EMBL	CDS	526887	527693	.	-	0	ID=cds488;Parent=gene494;Dbxref=EnsemblGenomes-Gn:azo0490,EnsemblGenomes-Tr:CAL93107,GOA:A1K2Q2,InterPro:IPR029058,UniProtKB/TrEMBL:A1K2Q2,NCBI_GP:CAL93107.1;Name=CAL93107.1;Note=TREMBL:Q8F3A6: 43%25 identity%2C 60%25 similarity Non-heme chloroperoxidase (EC 1.11.1.10) (Chloride peroxidase) (CPO-P) (Chloroperoxidase P). CHLORINATES AND BROMINATES SUITABLE ORGANIC COMPOUNDS. INVOLVED IN THE BIOSYNTHESIS OF THE ANTIBIOTIC PYRROLNITRIN. InterPro: Alpha/beta hydrolase fold InterPro:IPR000073%3B A/b_hydrolase. IPR003089: AB_hydrolase. IPR000379: Ser_estrs. Pfam:PF00561%3B Abhydrolase_1%3B 1 TIGRFAM:dsbE: periplasmic protein thiol:disulf%3B~Family membership;gbkey=CDS;product=putative acetone-cyanohydrin lyase;protein_id=CAL93107.1;transl_table=11
AM406670.1	EMBL	gene	527690	528310	.	-	.	ID=gene495;Name=isoJ;gbkey=Gene;gene=isoJ;gene_biotype=protein_coding;locus_tag=azo0491
AM406670.1	EMBL	CDS	527690	528310	.	-	0	ID=cds489;Parent=gene495;Dbxref=EnsemblGenomes-Gn:azo0491,EnsemblGenomes-Tr:CAL93108,GOA:A1K2Q3,InterPro:IPR004045,InterPro:IPR004046,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:A1K2Q3,NCBI_GP:CAL93108.1;Name=CAL93108.1;Note=Probable glutathione S-transferase. Homology to isoJ of Rhodococcus sp AD45 of 48%25 (trembl|Q9RBP3). Catalysis of the reaction: R-X + glutathione %3D H-X + R-S-glutathione. R may be an aliphatic%2C aromatic or heterocyclic group%3B X may be a sulfate%2C nitrile or halide group. Pfam: Glutathione S-transferase%2C N-terminal domain%3B Glutathione S-transferase%2C C-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=isoJ;product=probable glutathione S-transferase;protein_id=CAL93108.1;transl_table=11
AM406670.1	EMBL	gene	528392	528589	.	+	.	ID=gene496;Name=azo0492;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0492
AM406670.1	EMBL	CDS	528392	528589	.	+	0	ID=cds490;Parent=gene496;Dbxref=EnsemblGenomes-Gn:azo0492,EnsemblGenomes-Tr:CAL93109,InterPro:IPR021320,UniProtKB/TrEMBL:A1K2Q4,NCBI_GP:CAL93109.1;Name=CAL93109.1;Note=Conserved hypothetical membrane protein. Homology to BH1226 of Bacillus halodurans of 40%25 (pir|B83803) no domains predicted. signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93109.1;transl_table=11
AM406670.1	EMBL	gene	528605	529843	.	-	.	ID=gene497;Name=cca1;gbkey=Gene;gene=cca1;gene_biotype=protein_coding;locus_tag=azo0493
AM406670.1	EMBL	CDS	528605	529843	.	-	0	ID=cds491;Parent=gene497;Dbxref=EnsemblGenomes-Gn:azo0493,EnsemblGenomes-Tr:CAL93110,GOA:A1K2Q5,InterPro:IPR002646,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR012006,NCBI_GP:CAL93110.1;Name=CAL93110.1;Note=tRNA nucleotidyltransferase (EC 2.7.7.25) (tRNA adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme). This enzyme carries out synthesis of the tRNA CCA terminus without the direction of a template using the multiple accepting and donating subsites within its active site. HDIG: uncharacterized domain HDIG%3B~Family membership;gbkey=CDS;gene=cca1;product=tRNA-nucleotidyltransferase;protein_id=CAL93110.1;transl_table=11
AM406670.1	EMBL	gene	529843	530487	.	-	.	ID=gene498;Name=sspA1;gbkey=Gene;gene=sspA1;gene_biotype=protein_coding;locus_tag=azo0494
AM406670.1	EMBL	CDS	529843	530487	.	-	0	ID=cds492;Parent=gene498;Dbxref=EnsemblGenomes-Gn:azo0494,EnsemblGenomes-Tr:CAL93111,InterPro:IPR004045,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:A1K2Q6,NCBI_GP:CAL93111.1;Name=CAL93111.1;Note=Putative stringent starvation protein A. Homology to sspA of E. coli of 26%25 (sprot|SSPA_ECOLI). FORMS AN EQUIMOLAR COMPLEX WITH THE RNA POLYMERASE HOLOENZYME (RNAP) BUT NOT WITH THE CORE ENZYME. IT IS SYNTHESIZED PREDOMINANTLY WHEN CELLS ARE EXPOSED TO AMINO ACID STARVATION AT WHICH TIME IT ACCOUNTS FOR OVER 50%25 OF THE TOTAL PROTEIN SYNTHESIZED. InterPro: Glutathione S-transferase N terminus (IPR001045) Pfam: Glutathione S-transferase%2C N-terminal domaine no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=sspA1;product=putative stringent starvation protein A;protein_id=CAL93111.1;transl_table=11
AM406670.1	EMBL	gene	530568	531536	.	-	.	ID=gene499;Name=azo0495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0495
AM406670.1	EMBL	CDS	530568	531536	.	-	0	ID=cds493;Parent=gene499;Dbxref=EnsemblGenomes-Gn:azo0495,EnsemblGenomes-Tr:CAL93112,GOA:A1K2Q7,InterPro:IPR016040,UniProtKB/TrEMBL:A1K2Q7,NCBI_GP:CAL93112.1;Name=CAL93112.1;Note=33%25%3B~Specificity unclear;gbkey=CDS;product=putative NADH dehydrogenase;protein_id=CAL93112.1;transl_table=11
AM406670.1	EMBL	gene	531552	533480	.	-	.	ID=gene500;Name=sltY;gbkey=Gene;gene=sltY;gene_biotype=protein_coding;locus_tag=azo0496
AM406670.1	EMBL	CDS	531552	533480	.	-	0	ID=cds494;Parent=gene500;Dbxref=EnsemblGenomes-Gn:azo0496,EnsemblGenomes-Tr:CAL93113,GOA:A1K2Q8,InterPro:IPR008258,InterPro:IPR008939,InterPro:IPR012289,InterPro:IPR016026,InterPro:IPR023346,UniProtKB/TrEMBL:A1K2Q8,NCBI_GP:CAL93113.1;Name=CAL93113.1;Note=Putative soluble lytic murein transglycosylase. Homology to slt of E. coli of 24%25 (sprot|SLT_ECOLI). Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division. InterPro: SLT domain (IPR000189) Pfam: Transglycosylase SLT domain singal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=sltY;product=putative soulbe lytic murein transglycosylase;protein_id=CAL93113.1;transl_table=11
AM406670.1	EMBL	gene	533521	534114	.	+	.	ID=gene501;Name=azo0497;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0497
AM406670.1	EMBL	CDS	533521	534114	.	+	0	ID=cds495;Parent=gene501;Dbxref=EnsemblGenomes-Gn:azo0497,EnsemblGenomes-Tr:CAL93114,GOA:A1K2Q9,InterPro:IPR002698,InterPro:IPR024185,UniProtKB/TrEMBL:A1K2Q9,NCBI_GP:CAL93114.1;Name=CAL93114.1;Note=5-formyltetrahydrofolate cyclo-ligase InterPro: 5-formyltetrahydrofolate cyclo-ligase%3B~Specificity unclear;gbkey=CDS;product=CAL93114.1;protein_id=CAL93114.1;transl_table=11
AM406670.1	EMBL	gene	534121	536826	.	-	.	ID=gene502;Name=azo0498;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0498
AM406670.1	EMBL	CDS	534121	536826	.	-	0	ID=cds496;Parent=gene502;Dbxref=EnsemblGenomes-Gn:azo0498,EnsemblGenomes-Tr:CAL93115,GOA:A1K2R0,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR013655,InterPro:IPR013656,InterPro:IPR029787,UniProtKB/TrEMBL:A1K2R0,NCBI_GP:CAL93115.1;Name=CAL93115.1;Note=GGDEF/PAS/PAC-domain containing protein. Similarity to SWISSPROT: sprot|Y4LL_RHISN (13%25 Rhizobium sp. (strain NGR234)%2C hypothetical 91.8 kda protein y4ll) / TREMBL: trembl|Q55955 (14%25 Synechocystis sp. (strain PCC 6803)%2Csll0779) Pfam: PF00990 GGDEF domain. PF00989 PAS. PF00785 PAC. TIGRFAM: TIGR00254 putative diguanylate cyclase (GGDEF) domain. TIGR00229 PAS domain S-box. TMHMM reporting 2 transmembrane helices.;gbkey=CDS;product=GGDEF/PAS/PAC-domain containing protein;protein_id=CAL93115.1;transl_table=11
AM406670.1	EMBL	gene	536846	537652	.	-	.	ID=gene503;Name=pheC;gbkey=Gene;gene=pheC;gene_biotype=protein_coding;locus_tag=azo0499
AM406670.1	EMBL	CDS	536846	537652	.	-	0	ID=cds497;Parent=gene503;Dbxref=EnsemblGenomes-Gn:azo0499,EnsemblGenomes-Tr:CAL93116,GOA:A1K2R1,InterPro:IPR001638,UniProtKB/TrEMBL:A1K2R1,NCBI_GP:CAL93116.1;Name=CAL93116.1;Note=Putative cyclohexadienyl dehydratase precursor. Homology to pheC of P. aeruginosa of 36%25 (sprot|PHEC_PSEAE) FORMS ALTERNATIVE PATHWAY FOR PHENYLALANINE BIOSYNTHESIS. CAN CATALYZE TWO REACTIONS: PREPHENATE DEHYDRATASE AND AROGENATE DEHYDRATASE. MAY HAVE A ROLE IN CHEMOTAXIS OR TRANSPORT. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR001638)%2C solute-binding protein/glutamate receptor (IPR001311) Pfam: Bacterial extracellular solute-binding proteins signal peptide no TMHs%3B~Function unclear;gbkey=CDS;gene=pheC;product=putative cyclohexadienyl dehydratase;protein_id=CAL93116.1;transl_table=11
AM406670.1	EMBL	gene	537808	539328	.	-	.	ID=gene504;Name=ilvA;gbkey=Gene;gene=ilvA;gene_biotype=protein_coding;locus_tag=azo0500
AM406670.1	EMBL	CDS	537808	539328	.	-	0	ID=cds498;Parent=gene504;Dbxref=EnsemblGenomes-Gn:azo0500,EnsemblGenomes-Tr:CAL93117,GOA:A1K2R2,InterPro:IPR000634,InterPro:IPR001721,InterPro:IPR001926,InterPro:IPR005787,UniProtKB/TrEMBL:A1K2R2,NCBI_GP:CAL93117.1;Name=CAL93117.1;Note=Probable Threonine dehydratase(EC 4.3.1.19) (Threonine deaminase%2C Threonine ammonia-lyase). Homology to ilv1 of A. adeninovorans of 52%25 (sprot|THDH_ARXAD). Catalyzes the formation of alpha-ketobutyrate from threonine in a two-step reaction. The first step is a dehydration of threonine followed by rehydration and liberation of ammonia. InterPro: Pyridoxal-5-phosphate-dependent enzymes beta family (IPR001926)%2CSerine/Threonine dehydratase pyridoxal-hposphate attachment site (IPR000634)%2C C-terminal domain of threonine dehydratase (IPR001721) Pfam: Pyridoxal-phosphate dependent enzyme%2C C-terminal doman of threonin dehydratase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ilvA;product=probable threonine dehydratase;protein_id=CAL93117.1;transl_table=11
AM406670.1	EMBL	gene	539453	540394	.	-	.	ID=gene505;Name=hprK;gbkey=Gene;gene=hprK;gene_biotype=protein_coding;locus_tag=azo0501
AM406670.1	EMBL	CDS	539453	540394	.	-	0	ID=cds499;Parent=gene505;Dbxref=EnsemblGenomes-Gn:azo0501,EnsemblGenomes-Tr:CAL93118,GOA:A1K2R3,InterPro:IPR003755,InterPro:IPR011104,InterPro:IPR011126,InterPro:IPR027417,InterPro:IPR028979,NCBI_GP:CAL93118.1;Name=CAL93118.1;Note=Probable Hpr kinase/phosphorylase%2C Hpr_kinase. Pfam: PF02603%3B Hpr_kinase. TIGRFAM:TIGR00679%3B hpr-ser.%3B~High confidence in function and specificity;gbkey=CDS;gene=hprK;product=probable Hpr serine kinase/phosphatase;protein_id=CAL93118.1;transl_table=11
AM406670.1	EMBL	gene	540363	540848	.	-	.	ID=gene506;Name=ptsN;gbkey=Gene;gene=ptsN;gene_biotype=protein_coding;locus_tag=azo0502
AM406670.1	EMBL	CDS	540363	540848	.	-	0	ID=cds500;Parent=gene506;Dbxref=EnsemblGenomes-Gn:azo0502,EnsemblGenomes-Tr:CAL93119,GOA:A1K2R4,InterPro:IPR002178,InterPro:IPR006320,InterPro:IPR016152,UniProtKB/TrEMBL:A1K2R4,NCBI_GP:CAL93119.1;Name=CAL93119.1;Note=Probable nitrogen regulatory IIA protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=ptsN;product=protein-Npi-phosphohistidine-sugar phosphotransferase;protein_id=CAL93119.1;transl_table=11
AM406670.1	EMBL	gene	540982	541305	.	-	.	ID=gene507;Name=rpoX;gbkey=Gene;gene=rpoX;gene_biotype=protein_coding;locus_tag=azo0503
AM406670.1	EMBL	CDS	540982	541305	.	-	0	ID=cds501;Parent=gene507;Dbxref=EnsemblGenomes-Gn:azo0503,EnsemblGenomes-Tr:CAL93120,GOA:A1K2R5,InterPro:IPR003489,UniProtKB/TrEMBL:A1K2R5,NCBI_GP:CAL93120.1;Name=CAL93120.1;Note=Probable sigma 54 modulation protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=rpoX;product=probable sigma-54 modulation protein;protein_id=CAL93120.1;transl_table=11
AM406670.1	EMBL	gene	541320	542780	.	-	.	ID=gene508;Name=rpoN1;gbkey=Gene;gene=rpoN1;gene_biotype=protein_coding;locus_tag=azo0504
AM406670.1	EMBL	CDS	541320	542780	.	-	0	ID=cds502;Parent=gene508;Dbxref=EnsemblGenomes-Gn:azo0504,EnsemblGenomes-Tr:CAL93121,GOA:A1K2R6,InterPro:IPR000394,InterPro:IPR007046,InterPro:IPR007634,UniProtKB/TrEMBL:A1K2R6,NCBI_GP:CAL93121.1;Name=CAL93121.1;Note=RNA polymerase sigma-54 factor. The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. Similar to SWISSPROT: sprot|RP54_PSEAE (51%25 Pseudomonas aeruginosa%2C RNA polymerase sigma-54 factor RpoN) / sprot|RP54_ECOLI (46%25 Escherichia coli%2C RpoN or NtrA) InterPro: IPR000394 Sigma54_factor. Pfam: PF00309 Sigma54_AID. PF04963 Sigma54_CBD. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpoN1;product=RNA polymerase sigma-54 factor;protein_id=CAL93121.1;transl_table=11
AM406670.1	EMBL	gene	542790	543512	.	-	.	ID=gene509;Name=yhbG;gbkey=Gene;gene=yhbG;gene_biotype=protein_coding;locus_tag=azo0505
AM406670.1	EMBL	CDS	542790	543512	.	-	0	ID=cds503;Parent=gene509;Dbxref=EnsemblGenomes-Gn:azo0505,EnsemblGenomes-Tr:CAL93122,GOA:A1K2R7,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1K2R7,NCBI_GP:CAL93122.1;Name=CAL93122.1;Note=Probable ABC transporter ATP-binding protein HI1148. ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. TREMBL:Q7NST9: 64%25 identity%2C75%25 similarity InterPro: IPR003593%3B AAA_ATPase. IPR003439%3B ABC_transporter. IPR000767%3B Disease_resist. IPR003016%3B Lipoyl_BS. Pfam PF00005%3B ABC_tran%3B 1 mobB: molybdopterin-guanine dinucleoti TMH's present 0%3B~High confidence in function and specificity;gbkey=CDS;gene=yhbG;product=probable ATPase component of ABC transporter;protein_id=CAL93122.1;transl_table=11
AM406670.1	EMBL	gene	543499	543948	.	-	.	ID=gene510;Name=recX;gbkey=Gene;gene=recX;gene_biotype=protein_coding;locus_tag=azo0506
AM406670.1	EMBL	CDS	543499	543948	.	-	0	ID=cds504;Parent=gene510;Dbxref=EnsemblGenomes-Gn:azo0506,EnsemblGenomes-Tr:CAL93123,GOA:A1K2R8,InterPro:IPR003783,InterPro:IPR011991,UniProtKB/TrEMBL:A1K2R8,NCBI_GP:CAL93123.1;Name=CAL93123.1;Note=Regulatory protein recX. Modulates recA activity (By similarity). TREMBL: Q7WKM9: 45%25 identity%2C 63%25 similarity InterPro: RecX regulatory protein InterPro%3B IPR003783%3B RecX. Pfam: PF02631%3B RecX PPR: pentatricopeptide repeat domain No transmembrane helices present%3B~Family membership;gbkey=CDS;gene=recX;product=probable RecX-family regulatory protein;protein_id=CAL93123.1;transl_table=11
AM406670.1	EMBL	gene	543971	545005	.	-	.	ID=gene511;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=azo0507
AM406670.1	EMBL	CDS	543971	545005	.	-	0	ID=cds505;Parent=gene511;Dbxref=EnsemblGenomes-Gn:azo0507,EnsemblGenomes-Tr:CAL93124,GOA:A1K2R9,InterPro:IPR003593,InterPro:IPR013765,InterPro:IPR020584,InterPro:IPR020587,InterPro:IPR020588,InterPro:IPR023400,InterPro:IPR027417,NCBI_GP:CAL93124.1;Name=CAL93124.1;Note=Recombinase A. Homology to recA of H. seropedicae of 80%25 (sprot|RECA_HERSE) Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA the ATP-dependent uptake of single-stranded DNA by duplex DNA and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation and leading to its autocatalytic cleavage (By similarity). InterPro: RecA bacterial DNA recombination protein mobB: molybdopterin-guanine dinucleotid%3B~High confidence in function and specificity;gbkey=CDS;gene=recA;product=recombinase A;protein_id=CAL93124.1;transl_table=11
AM406670.1	EMBL	gene	545130	545615	.	-	.	ID=gene512;Name=ygaD1;gbkey=Gene;gene=ygaD1;gene_biotype=protein_coding;locus_tag=azo0508
AM406670.1	EMBL	CDS	545130	545615	.	-	0	ID=cds506;Parent=gene512;Dbxref=EnsemblGenomes-Gn:azo0508,EnsemblGenomes-Tr:CAL93125,InterPro:IPR008136,UniProtKB/TrEMBL:A1K2S0,NCBI_GP:CAL93125.1;Name=CAL93125.1;Note=Hypothetical 17.2 kDa protein 1 in recA 5region. TREMBL:Q9KUH9: 54%25 identity%2C 64%25 similarity CinA is the first gene in the competence-inducible (cin) operon%2C and is thought to be specifically required at some stage in the process of transformation [1]. This is a C-terminal region of putative competence-damaged proteins from the cin operon InterPro:IPR008136%3B CinA_C. Pfam: PF02464%3B CinA cinA_cterm: competence/damage-inducible p No signal peptide. No transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;gene=ygaD1;product=probable CinA-related protein;protein_id=CAL93125.1;transl_table=11
AM406670.1	EMBL	gene	545618	546100	.	-	.	ID=gene513;Name=azo0509;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0509
AM406670.1	EMBL	CDS	545618	546100	.	-	0	ID=cds507;Parent=gene513;Dbxref=EnsemblGenomes-Gn:azo0509,EnsemblGenomes-Tr:CAL93126,GOA:A1K2S1,InterPro:IPR007686,InterPro:IPR026037,UniProtKB/TrEMBL:A1K2S1,NCBI_GP:CAL93126.1;Name=CAL93126.1;Note=Region start changed from 546007 to 546100 (93 bases);gbkey=CDS;product=putative phosphatidylglycerophosphatase A;protein_id=CAL93126.1;transl_table=11
AM406670.1	EMBL	gene	546104	547114	.	-	.	ID=gene514;Name=thiL;gbkey=Gene;gene=thiL;gene_biotype=protein_coding;locus_tag=azo0510
AM406670.1	EMBL	CDS	546104	547114	.	-	0	ID=cds508;Parent=gene514;Dbxref=EnsemblGenomes-Gn:azo0510,EnsemblGenomes-Tr:CAL93127,GOA:A1K2S2,InterPro:IPR000728,InterPro:IPR006283,InterPro:IPR010918,InterPro:IPR016188,UniProtKB/TrEMBL:A1K2S2,NCBI_GP:CAL93127.1;Name=CAL93127.1;Note=Thiamine-phosphate kinase. catalytic activity: atp + thiamine phosphate %3D adp + thiamine diphosphate. pathway: thiamine biosynthesis.%3B~High confidence in function and specificity;gbkey=CDS;gene=thiL;product=thiamine-phosphate kinase;protein_id=CAL93127.1;transl_table=11
AM406670.1	EMBL	gene	547249	547530	.	-	.	ID=gene515;Name=azo0511;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0511
AM406670.1	EMBL	CDS	547249	547530	.	-	0	ID=cds509;Parent=gene515;Dbxref=EnsemblGenomes-Gn:azo0511,EnsemblGenomes-Tr:CAL93128,InterPro:IPR005346,InterPro:IPR016155,UniProtKB/TrEMBL:A1K2S3,NCBI_GP:CAL93128.1;Name=CAL93128.1;gbkey=CDS;product=UPF0125 family protein;protein_id=CAL93128.1;transl_table=11
AM406670.1	EMBL	gene	547551	548285	.	-	.	ID=gene516;Name=rnfE1;gbkey=Gene;gene=rnfE1;gene_biotype=protein_coding;locus_tag=azo0512
AM406670.1	EMBL	CDS	547551	548285	.	-	0	ID=cds510;Parent=gene516;Dbxref=EnsemblGenomes-Gn:azo0512,EnsemblGenomes-Tr:CAL93129,GOA:A1K2S4,InterPro:IPR003667,InterPro:IPR010968,UniProtKB/TrEMBL:A1K2S4,NCBI_GP:CAL93129.1;Name=CAL93129.1;Note=Probable electron transport complex protein rnfE. Homology to rnfE of r. capsulata of 62%25 (sprot|RNFE_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. InterPro: RnfA-Nqr electron transport subunit ((IPR003667) Pfam: Rnf-Nqr-subunit%2C membran protein no signal peptide 5 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=rnfE1;product=probable electron transport complex protein RnfE;protein_id=CAL93129.1;transl_table=11
AM406670.1	EMBL	gene	548296	548922	.	-	.	ID=gene517;Name=rnfG1;gbkey=Gene;gene=rnfG1;gene_biotype=protein_coding;locus_tag=azo0513
AM406670.1	EMBL	CDS	548296	548922	.	-	0	ID=cds511;Parent=gene517;Dbxref=EnsemblGenomes-Gn:azo0513,EnsemblGenomes-Tr:CAL93130,GOA:A1K2S5,InterPro:IPR007329,InterPro:IPR010209,UniProtKB/TrEMBL:A1K2S5,NCBI_GP:CAL93130.1;Name=CAL93130.1;Note=Probable electron transport complex protein rnfG. Homolog to rnfG of R. capsulata of 51%25 (sprot|RNFG_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=rnfG1;product=probable electron transport complex protein RnfG;protein_id=CAL93130.1;transl_table=11
AM406670.1	EMBL	gene	548939	549994	.	-	.	ID=gene518;Name=rnfD1;gbkey=Gene;gene=rnfD1;gene_biotype=protein_coding;locus_tag=azo0514
AM406670.1	EMBL	CDS	548939	549994	.	-	0	ID=cds512;Parent=gene518;Dbxref=EnsemblGenomes-Gn:azo0514,EnsemblGenomes-Tr:CAL93131,GOA:A1K2S6,InterPro:IPR004338,InterPro:IPR011303,UniProtKB/TrEMBL:A1K2S6,NCBI_GP:CAL93131.1;Name=CAL93131.1;Note=Probable electron transport complex protein rnfD. Homology to rnfD of R. capsulatus of 42%25 (sprot|RNFD_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase (By similarity). InterPro: NQR2 and RnfD/E related proteins (IPR004338) Pfam: NQR2%2C RnfD%2C RnfE family no signal peptide probable 7 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=rnfD1;product=probable electron transport complex protein RnfD;protein_id=CAL93131.1;transl_table=11
AM406670.1	EMBL	gene	549991	551550	.	-	.	ID=gene519;Name=rnfC1;gbkey=Gene;gene=rnfC1;gene_biotype=protein_coding;locus_tag=azo0515
AM406670.1	EMBL	CDS	549991	551550	.	-	0	ID=cds513;Parent=gene519;Dbxref=EnsemblGenomes-Gn:azo0515,EnsemblGenomes-Tr:CAL93132,GOA:A1K2S7,InterPro:IPR001450,InterPro:IPR009051,InterPro:IPR010208,InterPro:IPR011538,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR019554,InterPro:IPR026902,UniProtKB/TrEMBL:A1K2S7,NCBI_GP:CAL93132.1;Name=CAL93132.1;Note=Probable electron transport complex protein RnfC. Homology to rnfC of R. capsulatus of 48%25 (sprot|RNFC_RHOCA) Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB. InterPro: Respiratory-chain NADH dehydrogenase 51 Kd subunit (IPR001949)%3B 4Fe-4S ferredoxin%2C iron-sulfur bidning domain (IPR001450) Pfam: Respiratory-chain NADH dehydrogenase%3B 4Fe-4S binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=rnfC1;product=probable electronen transport complex protein RnfC;protein_id=CAL93132.1;transl_table=11
AM406670.1	EMBL	gene	551561	552088	.	-	.	ID=gene520;Name=rnfB1;gbkey=Gene;gene=rnfB1;gene_biotype=protein_coding;locus_tag=azo0516
AM406670.1	EMBL	CDS	551561	552088	.	-	0	ID=cds514;Parent=gene520;Dbxref=EnsemblGenomes-Gn:azo0516,EnsemblGenomes-Tr:CAL93133,GOA:A1K2S8,InterPro:IPR007202,InterPro:IPR010207,InterPro:IPR016463,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K2S8,NCBI_GP:CAL93133.1;Name=CAL93133.1;Note=Probable electron transport complex protein rnfB. Homology to rnfB of R. capsulatus of 48%25 (sprot|RNFB_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfC. Pfam: 4Fe-4S binding domain signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=rnfB1;product=probable electron transport complex protein RnfB;protein_id=CAL93133.1;transl_table=11
AM406670.1	EMBL	gene	552106	552687	.	-	.	ID=gene521;Name=rnfA1;gbkey=Gene;gene=rnfA1;gene_biotype=protein_coding;locus_tag=azo0517
AM406670.1	EMBL	CDS	552106	552687	.	-	0	ID=cds515;Parent=gene521;Dbxref=EnsemblGenomes-Gn:azo0517,EnsemblGenomes-Tr:CAL93134,GOA:A1K2S9,InterPro:IPR003667,InterPro:IPR011293,NCBI_GP:CAL93134.1;Name=CAL93134.1;Note=Probable electron transport complex protein RnfA. Homology to rnfA of R. capsultatus of 66%25 (RNFA_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Required for stable existence of rnfB and rnfC. InterPro: RnfA-Nqr electron transport subunit (IPR003667) Pfam: Rnf-Nqr subunit%2C membrane protein no signal peptide 6 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=rnfA1;product=probable electron transport complex protein RnfA;protein_id=CAL93134.1;transl_table=11
AM406670.1	EMBL	gene	553036	554607	.	+	.	ID=gene522;Name=nifL;gbkey=Gene;gene=nifL;gene_biotype=protein_coding;locus_tag=azo0518
AM406670.1	EMBL	CDS	553036	554607	.	+	0	ID=cds516;Parent=gene522;Dbxref=EnsemblGenomes-Gn:azo0518,EnsemblGenomes-Tr:CAL93135,GOA:A1K2T0,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003594,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR014285,UniProtKB/TrEMBL:A1K2T0,NCBI_GP:CAL93135.1;Name=CAL93135.1;Note=Nitrogen fixation regulatory protein (EC 2.7.3.-). Required for the inhibition of nifA activity in response to oxygen and low level of fixed nitrogen. Similar to SWISSPROT: sprot|NIFL_AZOVI (41%25 Azotobacter vinelandii%2Cnitrogen fixation regulatory protein (EC 2.7.3.-)%2C NifL) InterPro: IPR003661 His_kinA_N. The histidine kinase A (phosphoacceptor) N-terminal domain is a dimerisation and phosphoacceptor domain of histidine kinases. It has been found in bacterial sensor protein/histidine kinases. IPR000014 PAS. PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. IPR000700 PAS-assoc_C. IPR004358 Bact_sens_pr_C. IPR003594 ATPbind_ATPase. Pfam: PF00512 HisKA. PF00989 PAS. PF00785 PAC. TIGRFAM: TIGR00229 PAS domain S-box.%3B~High confidence in function and specificity;gbkey=CDS;gene=nifL;product=nitrogen fixation regulatory protein;protein_id=CAL93135.1;transl_table=11
AM406670.1	EMBL	gene	554604	556157	.	+	.	ID=gene523;Name=nifA;gbkey=Gene;gene=nifA;gene_biotype=protein_coding;locus_tag=azo0519
AM406670.1	EMBL	CDS	554604	556157	.	+	0	ID=cds517;Parent=gene523;Dbxref=EnsemblGenomes-Gn:azo0519,EnsemblGenomes-Tr:CAL93136,GOA:A1K2T1,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003018,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR010113,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,InterPro:IPR029016,UniProtKB/TrEMBL:A1K2T1,NCBI_GP:CAL93136.1;Name=CAL93136.1;Note=Nif-specific regulatory protein. NIFA A TRANSCRIPTIONAL ACTIVATOR IS REQUIRED FOR ACTIVATION OF MOST NIF OPERONS WHICH ARE DIRECTLY INVOLVED IN NITROGEN FIXATION. NIFA INTERACTS WITH SIGMA-54. InterPro: Sigma-54 factor interaction domain%3B~High confidence in function and specificity;gbkey=CDS;gene=nifA;product=nif-specific regulatory protein;protein_id=CAL93136.1;transl_table=11
AM406670.1	EMBL	gene	556202	557770	.	-	.	ID=gene524;Name=azo0520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0520
AM406670.1	EMBL	CDS	556202	557770	.	-	0	ID=cds518;Parent=gene524;Dbxref=EnsemblGenomes-Gn:azo0520,EnsemblGenomes-Tr:CAL93137,UniProtKB/TrEMBL:A1K2T2,NCBI_GP:CAL93137.1;Name=CAL93137.1;Note=Conserved hypothetical secreted protein. Homology to Gmet02000900 of Geobacter metallireducens of 45%25 (gi|48846570|ref|ZP_00300831.1|(NBCI ENTREZ)). No domains predicted. Signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93137.1;transl_table=11
AM406670.1	EMBL	gene	557796	558329	.	-	.	ID=gene525;Name=azo0521;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0521
AM406670.1	EMBL	CDS	557796	558329	.	-	0	ID=cds519;Parent=gene525;Dbxref=EnsemblGenomes-Gn:azo0521,EnsemblGenomes-Tr:CAL93138,UniProtKB/TrEMBL:A1K2T3,NCBI_GP:CAL93138.1;Name=CAL93138.1;Note=Hypothetical secreted protein. No Hits in the PDB. No domains predicted. No TMHs. Signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93138.1;transl_table=11
AM406670.1	EMBL	gene	558326	558853	.	-	.	ID=gene526;Name=sodC;gbkey=Gene;gene=sodC;gene_biotype=protein_coding;locus_tag=azo0522
AM406670.1	EMBL	CDS	558326	558853	.	-	0	ID=cds520;Parent=gene526;Dbxref=EnsemblGenomes-Gn:azo0522,EnsemblGenomes-Tr:CAL93139,GOA:A1K2T4,InterPro:IPR001424,InterPro:IPR018152,UniProtKB/TrEMBL:A1K2T4,NCBI_GP:CAL93139.1;Name=CAL93139.1;Note=Superoxide dismutase [Cu-Zn]precursor (EC 1.15.1.1)%2C sodC.Destroys radicals which are normally produced within the cells and which are toxic to biological systems. May function against extracytoplasmic toxic oxygen species. 45%25 SOD_CU_ZN.Copper/Zinc superoxide dismutase. Pfam: PF00080%3B sodcu%3B 1. TIGR:CC1579. Signal peptide: present.%3B~High confidence in function and specificity;gbkey=CDS;gene=sodC;product=superoxide dismutase;protein_id=CAL93139.1;transl_table=11
AM406670.1	EMBL	gene	559180	560676	.	+	.	ID=gene527;Name=nifB;gbkey=Gene;gene=nifB;gene_biotype=protein_coding;locus_tag=azo0523
AM406670.1	EMBL	CDS	559180	560676	.	+	0	ID=cds521;Parent=gene527;Dbxref=EnsemblGenomes-Gn:azo0523,EnsemblGenomes-Tr:CAL93140,GOA:A1K2T5,InterPro:IPR000385,InterPro:IPR003731,InterPro:IPR005980,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,UniProtKB/TrEMBL:A1K2T5,NCBI_GP:CAL93140.1;Name=CAL93140.1;Note=FeMo cofactor biosynthesis protein nifB. PROBABLY INVOLVED IN THE SYNTHESIS OF THE FE-MO COFACTOR.%3B~High confidence in function and specificity;gbkey=CDS;gene=nifB;product=nitrogen fixation protein;protein_id=CAL93140.1;transl_table=11
AM406670.1	EMBL	gene	560794	561084	.	+	.	ID=gene528;Name=azo0524;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0524
AM406670.1	EMBL	CDS	560794	561084	.	+	0	ID=cds522;Parent=gene528;Dbxref=EnsemblGenomes-Gn:azo0524,EnsemblGenomes-Tr:CAL93141,GOA:A1K2T6,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K2T6,NCBI_GP:CAL93141.1;Name=CAL93141.1;Note=Conserved hypothetical ferredoxin. Homology to fdx of P. stuzeri of 57%25 (trembl|Q93JV5). Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4FE-4S binding domain no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical ferredoxin;protein_id=CAL93141.1;transl_table=11
AM406670.1	EMBL	gene	561181	561630	.	+	.	ID=gene529;Name=azo0525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0525
AM406670.1	EMBL	CDS	561181	561630	.	+	0	ID=cds523;Parent=gene529;Dbxref=EnsemblGenomes-Gn:azo0525,EnsemblGenomes-Tr:CAL93142,InterPro:IPR006503,InterPro:IPR006660,InterPro:IPR012336,UniProtKB/TrEMBL:A1K2T7,NCBI_GP:CAL93142.1;Name=CAL93142.1;Note=Conserved hypothetical protein. Homology to an orf of P. stuzeri of 49%25 (trembl|Q93JV4). Tigrfam: arsC: arsenate reductase. Pfam: ArsC family (PF03960) no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93142.1;transl_table=11
AM406670.1	EMBL	gene	561627	562916	.	+	.	ID=gene530;Name=fprA;gbkey=Gene;gene=fprA;gene_biotype=protein_coding;locus_tag=azo0526
AM406670.1	EMBL	CDS	561627	562916	.	+	0	ID=cds524;Parent=gene530;Dbxref=EnsemblGenomes-Gn:azo0526,EnsemblGenomes-Tr:CAL93143,GOA:A1K2T8,InterPro:IPR001226,InterPro:IPR001279,InterPro:IPR008254,InterPro:IPR016440,InterPro:IPR029039,UniProtKB/TrEMBL:A1K2T8,NCBI_GP:CAL93143.1;Name=CAL93143.1;Note=Probable type A flavoprotein fprA . Homology to frpA of R. capsulatus of 58%25 (sprot|FPRA_RHOCA) Low-potential electron donor to a number of redox enzymes (Potential). InterPro: Metallo-beta-lactamase superfamily (IPR001279)%3B Flavodoxin (IPR001226) Pfam: Metallo-beta-lactamase superfamily%3B Flavodoxin no singal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=fprA;product=probable type A flavoprotein;protein_id=CAL93143.1;transl_table=11
AM406670.1	EMBL	gene	562926	563213	.	+	.	ID=gene531;Name=fdxC;gbkey=Gene;gene=fdxC;gene_biotype=protein_coding;locus_tag=azo0527
AM406670.1	EMBL	CDS	562926	563213	.	+	0	ID=cds525;Parent=gene531;Dbxref=EnsemblGenomes-Gn:azo0527,EnsemblGenomes-Tr:CAL93144,GOA:A1K2T9,InterPro:IPR001041,InterPro:IPR006058,InterPro:IPR012675,UniProtKB/TrEMBL:A1K2T9,NCBI_GP:CAL93144.1;Name=CAL93144.1;Note=Ferredoxin IV (FdIV) (Ferredoxin plant-type). Homology to fdxC of R. capsulatus of 62%25 (FER4_RHOCA). FERREDOXINS ARE IRON-SULFUR PROTEINS THAT TRANSFER ELECTRONS IN A WIDE VARIETY OF METABOLIC REACTIONS. THIS FERREDOXIN PROBABLY PARTICIPATES IN NITROGEN FIXATION. Pfam: 2Fe-2S iron-sulfur clauster binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fdxC;product=probable ferredoxin IV;protein_id=CAL93144.1;transl_table=11
AM406670.1	EMBL	gene	563265	563615	.	+	.	ID=gene532;Name=fdxD;gbkey=Gene;gene=fdxD;gene_biotype=protein_coding;locus_tag=azo0528
AM406670.1	EMBL	CDS	563265	563615	.	+	0	ID=cds526;Parent=gene532;Dbxref=EnsemblGenomes-Gn:azo0528,EnsemblGenomes-Tr:CAL93145,GOA:A1K2U0,InterPro:IPR001041,InterPro:IPR006058,InterPro:IPR012675,UniProtKB/TrEMBL:A1K2U0,NCBI_GP:CAL93145.1;Name=CAL93145.1;Note=Ferredoxin V (FdV) (Ferredoxin plant-type). FERREDOXINS ARE IRON-SULFUR PROTEINS THAT TRANSFER ELECTRONS IN A WIDE VARIETY OF METABOLIC REACTIONS. THIS FERREDOXIN PROBABLY PARTICIPATES IN NITROGEN FIXATION. InterPro: Ferredoxin%3B~High confidence in function and specificity;gbkey=CDS;gene=fdxD;product=Ferredoxin V;protein_id=CAL93145.1;transl_table=11
AM406670.1	EMBL	gene	563680	564255	.	+	.	ID=gene533;Name=nifQ;gbkey=Gene;gene=nifQ;gene_biotype=protein_coding;locus_tag=azo0529
AM406670.1	EMBL	CDS	563680	564255	.	+	0	ID=cds527;Parent=gene533;Dbxref=EnsemblGenomes-Gn:azo0529,EnsemblGenomes-Tr:CAL93146,GOA:A1K2U1,InterPro:IPR006975,UniProtKB/TrEMBL:A1K2U1,NCBI_GP:CAL93146.1;Name=CAL93146.1;Note=Putative NifQ protein. Homology to nifQ of A. vinelandii of 33%25 (sprot|NIFQ_AZOVI(SRS) NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor (FeMo-co)%2C which is an integral part of the active site of dinitrogenase [2]. The conserved C-terminal cysteine residues may be involved in metal binding. Pfam: NifQ no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=nifQ;product=putative NifQ protein;protein_id=CAL93146.1;transl_table=11
AM406670.1	EMBL	gene	564301	565239	.	+	.	ID=gene534;Name=draG1;gbkey=Gene;gene=draG1;gene_biotype=protein_coding;locus_tag=azo0530
AM406670.1	EMBL	CDS	564301	565239	.	+	0	ID=cds528;Parent=gene534;Dbxref=EnsemblGenomes-Gn:azo0530,EnsemblGenomes-Tr:CAL93147,GOA:A1K2U2,InterPro:IPR005502,InterPro:IPR013479,UniProtKB/TrEMBL:A1K2U2,NCBI_GP:CAL93147.1;Name=CAL93147.1;Note=Probable ADP-ribosyl-[dinitrogen reductase] hydrolase. Homology to draG of R. rubrum of 44%25 (sprot|DRAG_RHORU) Involved in the regulation of the nitrogen fixation activity by the reversible ADP-ribosylation of the dinitrogenase reductase component of the nitrogenase enzyme complex. The ADP-ribosyltransferase (DraT) transfers the ADP-ribose group from NAD to dinitrogenase reductase. The ADP-ribose group is removed through the action of the ADP-ribosylglycohydrolase (DraG). Pfam: ADP-ribosylglycohydrolase no signal peptide no TMHs;gbkey=CDS;gene=draG1;product=probable ADP-ribosyl-[dinitrogen reductase] hydrolase;protein_id=CAL93147.1;transl_table=11
AM406670.1	EMBL	gene	565267	566196	.	-	.	ID=gene535;Name=azo0531;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0531
AM406670.1	EMBL	CDS	565267	566196	.	-	0	ID=cds529;Parent=gene535;Dbxref=EnsemblGenomes-Gn:azo0531,EnsemblGenomes-Tr:CAL93148,InterPro:IPR011990,InterPro:IPR013026,UniProtKB/TrEMBL:A1K2U3,NCBI_GP:CAL93148.1;Name=CAL93148.1;Note=Conserved hypothetical secreted protein. Homology to PA2778 of P.aeruginosa of 39%25 (trembl|Q9I065(SRS)) Has Signal Peptide. No TMH present. Has PF03412:Peptidase C39 family%3BLantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites%2C suggesting that a different processing enzyme is involved. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. The ABC transporter is the maturation protease and its proteolytic domain resides in the N-terminal part of the protein. This peptidase domain is found in a wide range of ABC transporters%2C however the presumed catalytic cysteine and histidine are not conserved in all members of this family.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93148.1;transl_table=11
AM406670.1	EMBL	gene	566198	566773	.	-	.	ID=gene536;Name=azo0532;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0532
AM406670.1	EMBL	CDS	566198	566773	.	-	0	ID=cds530;Parent=gene536;Dbxref=EnsemblGenomes-Gn:azo0532,EnsemblGenomes-Tr:CAL93149,UniProtKB/TrEMBL:A1K2U4,NCBI_GP:CAL93149.1;Name=CAL93149.1;Note=Hypothetical membrane protein. No homology of the entire protein with the data bank. No domains predicted. No signal peptide. 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93149.1;transl_table=11
AM406670.1	EMBL	gene	566665	567276	.	-	.	ID=gene537;Name=yjdF;gbkey=Gene;gene=yjdF;gene_biotype=protein_coding;locus_tag=azo0533
AM406670.1	EMBL	CDS	566665	567276	.	-	0	ID=cds531;Parent=gene537;Dbxref=EnsemblGenomes-Gn:azo0533,EnsemblGenomes-Tr:CAL93150,InterPro:IPR014509,UniProtKB/TrEMBL:A1K2U5,NCBI_GP:CAL93150.1;Name=CAL93150.1;Note=Hypothetical protein yjdF%2C44%25 identity (56%25 similarity) to TrEMBL%3BQ8XDT2. SwissProt%3BP39270. Signal P reporting Signal peptide present. TMHMM2 reporting 3 TMH's present.;gbkey=CDS;gene=yjdF;product=Conserved Hypothetical protein;protein_id=CAL93150.1;transl_table=11
AM406670.1	EMBL	gene	567329	568462	.	-	.	ID=gene538;Name=azo0534;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0534
AM406670.1	EMBL	CDS	567329	568462	.	-	0	ID=cds532;Parent=gene538;Dbxref=EnsemblGenomes-Gn:azo0534,EnsemblGenomes-Tr:CAL93151,InterPro:IPR006311,InterPro:IPR006597,InterPro:IPR011990,UniProtKB/TrEMBL:A1K2U6,NCBI_GP:CAL93151.1;Name=CAL93151.1;Note=Hypothetical membrane protein. TREMBL:Q83LX6: 27%25 identity%2C 42%25 similarity. similarity to E.coli ybeT. some%2Cto yeast skt5 and s.pombe spac24b11.10c InterPro%3B IPR006597%3B Sel_like. InterPro%3B IPR001440%3B TPR. InterPro%3B IPR008941%3B TPR-like Pfam:DsbD:Cytochrome C biogenesis protein trans SMART:SM00671%3B SEL1 Signal peptide present (Signal P) transmembrane helices: 5 (TMHMM predicted).%3B~Function unclear;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93151.1;transl_table=11
AM406670.1	EMBL	gene	568662	569072	.	-	.	ID=gene539;Name=dcrH1;gbkey=Gene;gene=dcrH1;gene_biotype=protein_coding;locus_tag=azo0535
AM406670.1	EMBL	CDS	568662	569072	.	-	0	ID=cds533;Parent=gene539;Dbxref=EnsemblGenomes-Gn:azo0535,EnsemblGenomes-Tr:CAL93152,GOA:A1K2U7,InterPro:IPR012312,InterPro:IPR012827,UniProtKB/TrEMBL:A1K2U7,NCBI_GP:CAL93152.1;Name=CAL93152.1;Note=DcrH: hemerythrin protein%2Cis a transmembrane methyl-accepting protein probably involved in bacterial chemotaxis. 36%25 Hemerythrin. Hemerythrin family non-heme Pfam:PF01814%3B Hemerythrin%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=dcrH1;product=putative hemerythrin-like protein;protein_id=CAL93152.1;transl_table=11
AM406670.1	EMBL	gene	569083	569934	.	-	.	ID=gene540;Name=azo0536;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0536
AM406670.1	EMBL	CDS	569083	569934	.	-	0	ID=cds534;Parent=gene540;Dbxref=EnsemblGenomes-Gn:azo0536,EnsemblGenomes-Tr:CAL93153,UniProtKB/TrEMBL:A1K2U8,NCBI_GP:CAL93153.1;Name=CAL93153.1;Note=Conserved hypothetical protein. Homology to an orf of Pseudomonas stutzeri of 52%25 (tremble:Q9EVM9). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93153.1;transl_table=11
AM406670.1	EMBL	gene	570131	570973	.	-	.	ID=gene541;Name=draT;gbkey=Gene;gene=draT;gene_biotype=protein_coding;locus_tag=azo0537
AM406670.1	EMBL	CDS	570131	570973	.	-	0	ID=cds535;Parent=gene541;Dbxref=EnsemblGenomes-Gn:azo0537,EnsemblGenomes-Tr:CAL93154,GOA:A1K2U9,InterPro:IPR009953,UniProtKB/TrEMBL:A1K2U9,NCBI_GP:CAL93154.1;Name=CAL93154.1;Note=Putative NAD(+)-dinitrogen-reductase ADP-D-ribosyltransferase (EC 2.4.2.37) (ADP-ribosyltransferase). Homology to draT of R. rubrum of 39%25 (sprot|DRAT_RHORU(SRS) Involved in the regulation of the nitrogen fixation activity by the reversible ADP-ribosylation of the dinitrogenase reductase component of the nitrogenase enzyme complex. The ADP-ribosyltransferase transfers the ADP-ribose group from NAD to dinitrogenase reductase. The ADP-ribose group is removed through the action of the ADP-ribosylglycohydrolase (DraG). Pfam: DRAT no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=draT;product=putative NAD(+)-dinitrogen-reductase ADP-D-ribosyltransferase;protein_id=CAL93154.1;transl_table=11
AM406670.1	EMBL	gene	571215	572108	.	+	.	ID=gene542;Name=nifH;gbkey=Gene;gene=nifH;gene_biotype=protein_coding;locus_tag=azo0538
AM406670.1	EMBL	CDS	571215	572108	.	+	0	ID=cds536;Parent=gene542;Dbxref=EnsemblGenomes-Gn:azo0538,EnsemblGenomes-Tr:CAL93155,GOA:Q9F0V9,InterPro:IPR000392,InterPro:IPR005977,InterPro:IPR027417,UniProtKB/TrEMBL:Q9F0V9,NCBI_GP:CAL93155.1;Name=CAL93155.1;Note=88%25 NifH.IPR000392%3B NitrogenaseII. Pfam:PF00142%3B Fer4_NifH%3B 1. TIGRFAMs:TIGR02016%3B BchX%3B 1.TIGR01287%3B nifH%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=nifH;product=putative nitrogenase iron protein;protein_id=CAL93155.1;transl_table=11
AM406670.1	EMBL	gene	572230	573705	.	+	.	ID=gene543;Name=nifD;gbkey=Gene;gene=nifD;gene_biotype=protein_coding;locus_tag=azo0539
AM406670.1	EMBL	CDS	572230	573705	.	+	0	ID=cds537;Parent=gene543;Dbxref=EnsemblGenomes-Gn:azo0539,EnsemblGenomes-Tr:CAL93156,GOA:A1K2V1,InterPro:IPR000318,InterPro:IPR000510,InterPro:IPR005972,InterPro:IPR010143,UniProtKB/TrEMBL:A1K2V1,NCBI_GP:CAL93156.1;Name=CAL93156.1;Note=Nitrogenase molybdenum-iron protein alpha chain (EC 1.18.6.1) (Nitrogenase component I) (Dinitrogenase). The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components: the iron protein and the molybdenum-iron protein.%3B~High confidence in function and specificity;gbkey=CDS;gene=nifD;product=nitrogenase molybdenum-iron protein alpha chain;protein_id=CAL93156.1;transl_table=11
AM406670.1	EMBL	gene	573809	575377	.	+	.	ID=gene544;Name=nifK;gbkey=Gene;gene=nifK;gene_biotype=protein_coding;locus_tag=azo0540
AM406670.1	EMBL	CDS	573809	575377	.	+	0	ID=cds538;Parent=gene544;Dbxref=EnsemblGenomes-Gn:azo0540,EnsemblGenomes-Tr:CAL93157,GOA:A1K2V2,InterPro:IPR000318,InterPro:IPR000510,InterPro:IPR005976,InterPro:IPR024564,UniProtKB/TrEMBL:A1K2V2,NCBI_GP:CAL93157.1;Name=CAL93157.1;Note=Nitrogenase molybdenum-iron protein beta chain (EC 1.18.6.1) (Nitrogenase component I) (Dinitrogenase). The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components: the iron protein and the molybdenum-iron protein. InterPro: Oxidoreductase nitrogenase component 1 araD: L-ribulose-5-phosphate 4-epimer%3B~High confidence in function and specificity;gbkey=CDS;gene=nifK;product=nitrogenase molybdenum-iron protein beta chain;protein_id=CAL93157.1;transl_table=11
AM406670.1	EMBL	gene	575484	575708	.	+	.	ID=gene545;Name=nifT;gbkey=Gene;gene=nifT;gene_biotype=protein_coding;locus_tag=azo0541
AM406670.1	EMBL	CDS	575484	575708	.	+	0	ID=cds539;Parent=gene545;Dbxref=EnsemblGenomes-Gn:azo0541,EnsemblGenomes-Tr:CAL93158,GOA:A1K2V3,InterPro:IPR009727,InterPro:IPR024044,UniProtKB/TrEMBL:A1K2V3,NCBI_GP:CAL93158.1;Name=CAL93158.1;Note=Nitrogen fixation protein [nifT]%2C51%25 identity(72%25 Similarity) to SwissProt%3BP09427%2C TrEMBL%3BQ93JU8%2C57%25 identity. Has PF06988:NifT/FixU protein(IPR009727)%3BThis family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in K. pneumoniae has only a limited effect on nitrogen fixation. No Signal peptide or TMH present.%3B~High confidence in function and specificity;gbkey=CDS;gene=nifT;product=nitrogen fixation protein [nifT];protein_id=CAL93158.1;transl_table=11
AM406670.1	EMBL	gene	575735	575938	.	+	.	ID=gene546;Name=fdxN;gbkey=Gene;gene=fdxN;gene_biotype=protein_coding;locus_tag=azo0542
AM406670.1	EMBL	CDS	575735	575938	.	+	0	ID=cds540;Parent=gene546;Dbxref=EnsemblGenomes-Gn:azo0542,EnsemblGenomes-Tr:CAL93159,GOA:Q9F0V6,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q9F0V6,NCBI_GP:CAL93159.1;Name=CAL93159.1;Note=Ferredoxin. Pubilication: Egner et al.%2C 2001%2C J Bacteriol 183%2C 3752-3760 (trembl|Q9F0V6) Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding daimain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fdxN;product=FdxN protein;protein_id=CAL93159.1;transl_table=11
AM406670.1	EMBL	gene	576021	576743	.	+	.	ID=gene547;Name=nifY1;gbkey=Gene;gene=nifY1;gene_biotype=protein_coding;locus_tag=azo0543
AM406670.1	EMBL	CDS	576021	576743	.	+	0	ID=cds541;Parent=gene547;Dbxref=EnsemblGenomes-Gn:azo0543,EnsemblGenomes-Tr:CAL93160,InterPro:IPR003731,UniProtKB/TrEMBL:A1K2V5,NCBI_GP:CAL93160.1;Name=CAL93160.1;Note=NifY protein. Homology to nifY of Azoarcus sp. BH72 of 99%25 (gi|11493644|gb|AF200742.1|AF200742(NBCI ENTREZ)). Pfam: Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B%2C Y and X) proteins which are involved in the synthesis of an iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyses the reduction of dinitrogen to ammonium. No signal peptide predicted. No TMHs.%3B~Function unclear;gbkey=CDS;gene=nifY1;product=NifY protein;protein_id=CAL93160.1;transl_table=11
AM406670.1	EMBL	gene	576740	577012	.	+	.	ID=gene548;Name=azo0544;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0544
AM406670.1	EMBL	CDS	576740	577012	.	+	0	ID=cds542;Parent=gene548;Dbxref=EnsemblGenomes-Gn:azo0544,EnsemblGenomes-Tr:CAL93161,UniProtKB/TrEMBL:Q9F0V4,NCBI_GP:CAL93161.1;Name=CAL93161.1;Note=ORF1%3B~Conserved hypothetical protein. Homology to orf1 of Azoarcus sp. BH72 of 100%25 (gi|11493650|gb|AAG35591.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=hypothetical protein;protein_id=CAL93161.1;transl_table=11
AM406670.1	EMBL	gene	577211	578842	.	+	.	ID=gene549;Name=azo0545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0545
AM406670.1	EMBL	CDS	577211	578842	.	+	0	ID=cds543;Parent=gene549;Dbxref=EnsemblGenomes-Gn:azo0545,EnsemblGenomes-Tr:CAL93162,GOA:A1K2V7,InterPro:IPR004010,InterPro:IPR004089,InterPro:IPR004090,UniProtKB/TrEMBL:A1K2V7,NCBI_GP:CAL93162.1;Name=CAL93162.1;Note=Putative methyl-accepting chemotaxis protein%2CChmtaxis_transd. Pfam: PF00015%3B MCPsignal. SMART: SM00283%3B MA. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.%3B~Specificity unclear;gbkey=CDS;product=putative methyl-accepting chemotaxis protein;protein_id=CAL93162.1;transl_table=11
AM406670.1	EMBL	gene	578928	579785	.	-	.	ID=gene550;Name=nifM;gbkey=Gene;gene=nifM;gene_biotype=protein_coding;locus_tag=azo0546
AM406670.1	EMBL	CDS	578928	579785	.	-	0	ID=cds544;Parent=gene550;Dbxref=EnsemblGenomes-Gn:azo0546,EnsemblGenomes-Tr:CAL93163,GOA:A1K2V8,InterPro:IPR000297,InterPro:IPR014282,InterPro:IPR023058,InterPro:IPR027304,UniProtKB/TrEMBL:A1K2V8,NCBI_GP:CAL93163.1;Name=CAL93163.1;Note=Probable peptidylprolyl isomerase. Homology with nifM of A. chroococcum of 43%25 (sprot|NIFM_AZOCH) REQUIRED FOR THE ACTIVATION AND STABILIZATION OF THE IRON-COMPONENT (NIFH) OF NITROGENASE. PROBABLE PPIASE. InterPro: PpiC-type peptidyl-prolyl cis-trans isomerase (IPR000297) Pfam: PPIC-type PPIASE domain no signal peptide no TMHs hydrog_prot: hydrogenase maturation pro%3B~High confidence in function and specificity;gbkey=CDS;gene=nifM;product=probable peptidylprolyl isomerase;protein_id=CAL93163.1;transl_table=11
AM406670.1	EMBL	gene	579782	580273	.	-	.	ID=gene551;Name=nifZ;gbkey=Gene;gene=nifZ;gene_biotype=protein_coding;locus_tag=azo0547
AM406670.1	EMBL	CDS	579782	580273	.	-	0	ID=cds545;Parent=gene551;Dbxref=EnsemblGenomes-Gn:azo0547,EnsemblGenomes-Tr:CAL93164,GOA:A1K2V9,InterPro:IPR007415,UniProtKB/TrEMBL:A1K2V9,NCBI_GP:CAL93164.1;Name=CAL93164.1;Note=Nitrogen Fixation protein[nifZ]%2C 51%25 identity (67%25 similarity) SwissProt%3BP14889%2C66%25 similarity to SwissProt%3BP23124. Has PF04319:NifZ domain%3B(IPR007415)This short protein is found in the nif (nitrogen fixation) operon. Its function is unknown but is probably involved in nitrogen fixation or regulating some component of this process. This 75 residue region is presumed to be a domain. It is found in isolation in some members and in the amino terminal half of the longer NifZ proteins. No Signal Peptide Or TMH reported Present.%3B~High confidence in function and specificity;gbkey=CDS;gene=nifZ;product=Nitrogen Fixation protein;protein_id=CAL93164.1;transl_table=11
AM406670.1	EMBL	gene	580294	580614	.	-	.	ID=gene552;Name=nifW;gbkey=Gene;gene=nifW;gene_biotype=protein_coding;locus_tag=azo0548
AM406670.1	EMBL	CDS	580294	580614	.	-	0	ID=cds546;Parent=gene552;Dbxref=EnsemblGenomes-Gn:azo0548,EnsemblGenomes-Tr:CAL93165,GOA:A1K2W0,InterPro:IPR004893,UniProtKB/TrEMBL:A1K2W0,NCBI_GP:CAL93165.1;Name=CAL93165.1;Note=Nitrogenase stabilizing/protective protein nifW%2C50%25 identity (68%25 similarity) to SwissProt%3BP14888.TrEMBL%3B Q6US88(60%25 similarity). Has PF03206:Nitrogen fixation protein NifW%3B(IPR004893)Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins%2C a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity%2C the exact roles played by many of these proteins in the functions of nitrogenase are unclear. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. No Signal Peptide or TMH present.%3B~High confidence in function and specificity;gbkey=CDS;gene=nifW;product=nitrogen fixation protein NifW;protein_id=CAL93165.1;transl_table=11
AM406670.1	EMBL	gene	580638	581177	.	-	.	ID=gene553;Name=azo0549;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0549
AM406670.1	EMBL	CDS	580638	581177	.	-	0	ID=cds547;Parent=gene553;Dbxref=EnsemblGenomes-Gn:azo0549,EnsemblGenomes-Tr:CAL93166,UniProtKB/TrEMBL:A1K2W1,NCBI_GP:CAL93166.1;Name=CAL93166.1;Note=Conserved hypothetical protein. Homology to orf8 of Azotobacter vinelandii of 36%25 (tremble:Q44542). No domains predicted. No Signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93166.1;transl_table=11
AM406670.1	EMBL	gene	581177	582025	.	-	.	ID=gene554;Name=nifP;gbkey=Gene;gene=nifP;gene_biotype=protein_coding;locus_tag=azo0550
AM406670.1	EMBL	CDS	581177	582025	.	-	0	ID=cds548;Parent=gene554;Dbxref=EnsemblGenomes-Gn:azo0550,EnsemblGenomes-Tr:CAL93167,GOA:A1K2W2,InterPro:IPR001451,InterPro:IPR005881,InterPro:IPR011004,InterPro:IPR018357,UniProtKB/TrEMBL:A1K2W2,NCBI_GP:CAL93167.1;Name=CAL93167.1;Note=Serine acetyltransferase (EC 2.3.1.30). Homology to nifP of A. chrooccum of 58%25 (pir|D43706). PROBABLE SERINE ACETYLTRANSFERASE REQUIRED FOR OPTIMIZING THE EXPRESSION OF NITROGENASE ACTIVITY. NIFP MAY BE REQUIRED TO BOOST RATES OF SYNTHESIS OR INTRACELLULAR CONCENTRATIONS OF CYSTEINE OR METHIONINE. InterPro: Bacterial transferase hexapeptide repeat (IPR001451) no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=nifP;product=serine O-acetyltransferase;protein_id=CAL93167.1;transl_table=11
AM406670.1	EMBL	gene	582028	583218	.	-	.	ID=gene555;Name=nifV;gbkey=Gene;gene=nifV;gene_biotype=protein_coding;locus_tag=azo0551
AM406670.1	EMBL	CDS	582028	583218	.	-	0	ID=cds549;Parent=gene555;Dbxref=EnsemblGenomes-Gn:azo0551,EnsemblGenomes-Tr:CAL93168,GOA:A1K2W3,InterPro:IPR000891,InterPro:IPR002034,InterPro:IPR013477,InterPro:IPR013785,UniProtKB/TrEMBL:A1K2W3,NCBI_GP:CAL93168.1;Name=CAL93168.1;Note=Homocitrate synthase is involved in the biosynthesis of the iron-molybdenum cofactor of nitrogenase and catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate into homocitrate. Similar to sprot|NIFV_AZOVI (51%25) and to sprot|NIV1_ANASP (42%25). Pfam (PF00682): HMG-CoA Lyase-like family InterPro (PS00815): Alpha-isopropylmalate and homocitrate synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=nifV;product=homocitrate synthase;protein_id=CAL93168.1;transl_table=11
AM406670.1	EMBL	gene	583307	584530	.	-	.	ID=gene556;Name=nifS;gbkey=Gene;gene=nifS;gene_biotype=protein_coding;locus_tag=azo0552
AM406670.1	EMBL	CDS	583307	584530	.	-	0	ID=cds550;Parent=gene556;Dbxref=EnsemblGenomes-Gn:azo0552,EnsemblGenomes-Tr:CAL93169,GOA:A1K2W4,InterPro:IPR000192,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR016454,InterPro:IPR017772,InterPro:IPR020578,UniProtKB/TrEMBL:A1K2W4,NCBI_GP:CAL93169.1;Name=CAL93169.1;Note=Cysteine desulfurase(Nitrogenase metalloclusters biosynthesis protein nifS). Homology to nifS of A. chroococcum of 71%25 (sprot|NIFS_AZOCH) CATALYZES THE REMOVAL OF ELEMENTAL SULFUR ATOMS FROM CYSTEINE TO PRODUCE ALANINE. SEEMS TO PARTICIPATE IN THE BIOSYNTHESIS OF THE NITROGENASE METALLOCLUSTERS BY PROVIDING THE INORGANIC SULFUR REQUIRED FOR THE FE-S CORE FORMATION. Pfam: aminotransferase class-V no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=nifS;product=cysteine desulphurase;protein_id=CAL93169.1;transl_table=11
AM406670.1	EMBL	gene	584713	585603	.	-	.	ID=gene557;Name=nifU;gbkey=Gene;gene=nifU;gene_biotype=protein_coding;locus_tag=azo0553
AM406670.1	EMBL	CDS	584713	585603	.	-	0	ID=cds551;Parent=gene557;Dbxref=EnsemblGenomes-Gn:azo0553,EnsemblGenomes-Tr:CAL93170,GOA:A1K2W5,InterPro:IPR001075,InterPro:IPR002871,InterPro:IPR007419,InterPro:IPR010238,InterPro:IPR016217,UniProtKB/TrEMBL:A1K2W5,NCBI_GP:CAL93170.1;Name=CAL93170.1;Note=Probable nitrogen fixation protein NifU. Homology to nifU of A. vinelandii of 67%25 (sprot|NIFU_AZOVI). INVOLVED IN THE FORMATION OR REPAIR OF [FE-S] CLUSTERS PRESENT IN IRON-SULFUR PROTEINS. Pfam: NifU-like N-terminal domain%2C NifU-like domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=nifU;product=probable nitrogen fixation protein NifU;protein_id=CAL93170.1;transl_table=11
AM406670.1	EMBL	gene	585625	585948	.	-	.	ID=gene558;Name=hesB;gbkey=Gene;gene=hesB;gene_biotype=protein_coding;locus_tag=azo0554
AM406670.1	EMBL	CDS	585625	585948	.	-	0	ID=cds552;Parent=gene558;Dbxref=EnsemblGenomes-Gn:azo0554,EnsemblGenomes-Tr:CAL93171,GOA:A1K2W6,InterPro:IPR000361,InterPro:IPR016092,InterPro:IPR017870,UniProtKB/TrEMBL:A1K2W6,NCBI_GP:CAL93171.1;Name=CAL93171.1;Note=HesB/yadR/yfhF family protein%2C 45%25 identity to TrEMBL%3BQ9KJL2%2CQ6HRJ0. SwissProt%3BP37026(41%25 identity) Has PF01521%2C HesB-like domain%3BIPR000361%2C HesB_yadR_yfhF%3BThis family includes HesB which may be involved in nitrogen fixation%3B the hesB gene is expressed only under nitrogen fixation conditions. Other members of this family include various hypothetical proteins of which P46847 and NP31774 also contains NifU-like domains NifU which is also involved in nitrogen fixation. In the gram-negative soil bacterium Rhizobium etli%2C the hesB-like gene iscN is required for nitrogen fixation.%3B~High confidence in function and specificity;gbkey=CDS;gene=hesB;product=HesB/yadR/yfhF family protein;protein_id=CAL93171.1;transl_table=11
AM406670.1	EMBL	gene	586209	586601	.	-	.	ID=gene559;Name=azo0555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0555
AM406670.1	EMBL	CDS	586209	586601	.	-	0	ID=cds553;Parent=gene559;Dbxref=EnsemblGenomes-Gn:azo0555,EnsemblGenomes-Tr:CAL93172,UniProtKB/TrEMBL:A1K2W7,NCBI_GP:CAL93172.1;Name=CAL93172.1;Note=Conserved hypothetical protein. Homology to Daro03002610 of Dechloromonas aromatica of 39%25 (gi|41724013|ref|ZP_00150903.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93172.1;transl_table=11
AM406670.1	EMBL	gene	586611	586898	.	-	.	ID=gene560;Name=fdxB;gbkey=Gene;gene=fdxB;gene_biotype=protein_coding;locus_tag=azo0556
AM406670.1	EMBL	CDS	586611	586898	.	-	0	ID=cds554;Parent=gene560;Dbxref=EnsemblGenomes-Gn:azo0556,EnsemblGenomes-Tr:CAL93173,GOA:A1K2W8,InterPro:IPR014283,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K2W8,NCBI_GP:CAL93173.1;Name=CAL93173.1;Note=Probable ferredoxin. Homology to fdxB of R. capsulatus of 45%25 (sprot|FER3_RHOCA) Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding domain no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=fdxB;product=probable ferredoxin;protein_id=CAL93173.1;transl_table=11
AM406670.1	EMBL	gene	587039	587254	.	-	.	ID=gene561;Name=azo0557;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0557
AM406670.1	EMBL	CDS	587039	587254	.	-	0	ID=cds555;Parent=gene561;Dbxref=EnsemblGenomes-Gn:azo0557,EnsemblGenomes-Tr:CAL93174,InterPro:IPR007774,InterPro:IPR029012,UniProtKB/TrEMBL:A1K2W9,NCBI_GP:CAL93174.1;Name=CAL93174.1;Note=Conserved hypothetical protein Shows similarity to hypothetical 7.7 kDa protein in fixX 3'region (ORF1) of Azorhizobium caulinodans. TIGR00162: conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93174.1;transl_table=11
AM406670.1	EMBL	gene	587265	587750	.	-	.	ID=gene562;Name=azo0558;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0558
AM406670.1	EMBL	CDS	587265	587750	.	-	0	ID=cds556;Parent=gene562;Dbxref=EnsemblGenomes-Gn:azo0558,EnsemblGenomes-Tr:CAL93175,InterPro:IPR004952,UniProtKB/TrEMBL:A1K2X0,NCBI_GP:CAL93175.1;Name=CAL93175.1;Note=Conserved hypothetical protein(Has probable Nif-associated protein function)41%25 identity(62%25 similarity) to TrEMBL%3BQ9KJL5. Has PF03270(IPR004952):Protein of unknown function%2C DUF269%3BMembers of this family may be involved in nitrogen fixation%2C since they are found within nitrogen fixation operons. NO Signal Peptide or TMH present.%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93175.1;transl_table=11
AM406670.1	EMBL	gene	587769	588176	.	-	.	ID=gene563;Name=azo0559;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0559
AM406670.1	EMBL	CDS	587769	588176	.	-	0	ID=cds557;Parent=gene563;Dbxref=EnsemblGenomes-Gn:azo0559,EnsemblGenomes-Tr:CAL93176,InterPro:IPR007359,UniProtKB/TrEMBL:A1K2X1,NCBI_GP:CAL93176.1;Name=CAL93176.1;Note=Hypothetical sigma-E factor regulatory protein%2Cbest similarity to SWISSPROT: sprot|Y850_HAEIN (Haemophilus influenzae%2C hypothetical protein hi0850) / sprot|RSEC_ECOLI (23%25 Escherichia coli%2C sigma-e factor regulatory protein RseC). TMHMM reporting 2 transmembrane helices.;gbkey=CDS;product=hypothetical sigma-E factor regulatory protein;protein_id=CAL93176.1;transl_table=11
AM406670.1	EMBL	gene	588173	588700	.	-	.	ID=gene564;Name=nifX;gbkey=Gene;gene=nifX;gene_biotype=protein_coding;locus_tag=azo0560
AM406670.1	EMBL	CDS	588173	588700	.	-	0	ID=cds558;Parent=gene564;Dbxref=EnsemblGenomes-Gn:azo0560,EnsemblGenomes-Tr:CAL93177,InterPro:IPR003731,UniProtKB/TrEMBL:A1K2X2,NCBI_GP:CAL93177.1;Name=CAL93177.1;Note=Conserved hypothetical NifX protein. Homology to nifX of Azotobacter vinelandii of 47%25 (gi|128328|sp|P14887|NIFX_AZOVI(NBCI ENTREZ)). Pfam: Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B%2C Y and X) proteins which are involved in the synthesis of an iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyses the reduction of dinitrogen to ammonium. No signal peptide predicted. No TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;gene=nifX;product=conserved hypothetical NifX protein;protein_id=CAL93177.1;transl_table=11
AM406670.1	EMBL	gene	588618	590012	.	-	.	ID=gene565;Name=nifN;gbkey=Gene;gene=nifN;gene_biotype=protein_coding;locus_tag=azo0561
AM406670.1	EMBL	CDS	588618	590012	.	-	0	ID=cds559;Parent=gene565;Dbxref=EnsemblGenomes-Gn:azo0561,EnsemblGenomes-Tr:CAL93178,GOA:A1K2X3,InterPro:IPR000318,InterPro:IPR000510,InterPro:IPR005975,UniProtKB/TrEMBL:A1K2X3,NCBI_GP:CAL93178.1;Name=CAL93178.1;Note=Probable nitrogenase iron-molybdenum cofactor biosynthesis protein NifN. Homology to nifN of A. vielandii of 60%25 (sprot|NIFN_AZOVI). This protein may play a role in the biosynthesis of the prosthetic group of nitrogenase (FeMo cofactor). InterPro: Oxidoreductase nitrogenase component 1 (IPR000510) Pfam: Nitrogenease component 1 type oxidoreductase probable signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=nifN;product=probable nitrogenase iron-molybdenum cofactor biosynthesis protein NifN;protein_id=CAL93178.1;transl_table=11
AM406670.1	EMBL	gene	590023	591525	.	-	.	ID=gene566;Name=nifE;gbkey=Gene;gene=nifE;gene_biotype=protein_coding;locus_tag=azo0562
AM406670.1	EMBL	CDS	590023	591525	.	-	0	ID=cds560;Parent=gene566;Dbxref=EnsemblGenomes-Gn:azo0562,EnsemblGenomes-Tr:CAL93179,GOA:A1K2X4,InterPro:IPR000318,InterPro:IPR000510,InterPro:IPR005973,UniProtKB/TrEMBL:A1K2X4,NCBI_GP:CAL93179.1;Name=CAL93179.1;Note=Nitrogenase iron-molybdenum cofactor biosynthesis protein NifE. Homology to nifE of A. vielandii of 70%25 (sprot|NIFE_AZOVI). This protein may play a role in the biosynthesis of the prosthetic group of nitrogenase (FeMo cofactor). InterPro: Oxidoreductase nitrogenase component 1 (IPR000510) Pfam: Nitrogenease component 1 type oxidoreductase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=nifE;product=nitrogenase iron-molybdenum cofactor biosynthesis protein NifE;protein_id=CAL93179.1;transl_table=11
AM406670.1	EMBL	gene	591714	592715	.	-	.	ID=gene567;Name=azo0563;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0563
AM406670.1	EMBL	CDS	591714	592715	.	-	0	ID=cds561;Parent=gene567;Dbxref=EnsemblGenomes-Gn:azo0563,EnsemblGenomes-Tr:CAL93180,UniProtKB/TrEMBL:A1K2X5,NCBI_GP:CAL93180.1;Name=CAL93180.1;Note=Probale Hypothetical protein. Very Weak homology spanning the entire length of protein in the data base. No Significant domains%2CFeatures%2CTMH's or Signal Peptide present.%3B~Function unclear;gbkey=CDS;product=probale Hypothetical protein;protein_id=CAL93180.1;transl_table=11
AM406670.1	EMBL	gene	592764	593639	.	-	.	ID=gene568;Name=azo0564;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0564
AM406670.1	EMBL	CDS	592764	593639	.	-	0	ID=cds562;Parent=gene568;Dbxref=EnsemblGenomes-Gn:azo0564,EnsemblGenomes-Tr:CAL93181,InterPro:IPR004830,InterPro:IPR008665,InterPro:IPR011989,InterPro:IPR016024,UniProtKB/TrEMBL:A1K2X6,NCBI_GP:CAL93181.1;Name=CAL93181.1;Note=Conserved hypothetical protein. Has PF05484:LRV protein FeS4 cluster(IPR008665)%3BThis Iron sulphur cluster is found at the N-terminus of some proteins containing LRV repeats. Has 6%2C(IPR004830) PF01816:Leucine rich repeat variant%3BThe function of this repeat is unknown. It has an unusual structure of two helices. One is an alpha helix%2Cthe other is the much rarer 3-10 helix.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93181.1;transl_table=11
AM406670.1	EMBL	gene	593892	597104	.	+	.	ID=gene569;Name=morA;gbkey=Gene;gene=morA;gene_biotype=protein_coding;locus_tag=azo0565
AM406670.1	EMBL	CDS	593892	597104	.	+	0	ID=cds563;Parent=gene569;Dbxref=EnsemblGenomes-Gn:azo0565,EnsemblGenomes-Tr:CAL93182,GOA:A1K2X7,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR003018,InterPro:IPR029016,InterPro:IPR029787,UniProtKB/TrEMBL:A1K2X7,NCBI_GP:CAL93182.1;Name=CAL93182.1;Note=GGDEF/EAL/PAS/PAC/GAF-domain containing protein;gbkey=CDS;gene=morA;product=GGDEF/EAL/PAS/PAC/GAF-domain containing protein;protein_id=CAL93182.1;transl_table=11
AM406670.1	EMBL	gene	597165	597449	.	+	.	ID=gene570;Name=azo0566;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0566
AM406670.1	EMBL	CDS	597165	597449	.	+	0	ID=cds564;Parent=gene570;Dbxref=EnsemblGenomes-Gn:azo0566,EnsemblGenomes-Tr:CAL93183,UniProtKB/TrEMBL:A1K2X8,NCBI_GP:CAL93183.1;Name=CAL93183.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93183.1;transl_table=11
AM406670.1	EMBL	gene	597475	598143	.	-	.	ID=gene571;Name=azo0567;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0567
AM406670.1	EMBL	CDS	597475	598143	.	-	0	ID=cds565;Parent=gene571;Dbxref=EnsemblGenomes-Gn:azo0567,EnsemblGenomes-Tr:CAL93184,InterPro:IPR008869,InterPro:IPR023094,UniProtKB/TrEMBL:A1K2X9,NCBI_GP:CAL93184.1;Name=CAL93184.1;Note=Similar to TREMBL:Q82SF8 (45%25 identity)%3B TREMBL:Q7P0W9 (43%25 identity)%3B TREMBL:Q8XV73 (40%25 identity).;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93184.1;transl_table=11
AM406670.1	EMBL	gene	598310	599704	.	+	.	ID=gene572;Name=vsrA;gbkey=Gene;gene=vsrA;gene_biotype=protein_coding;locus_tag=azo0568
AM406670.1	EMBL	CDS	598310	599704	.	+	0	ID=cds566;Parent=gene572;Dbxref=EnsemblGenomes-Gn:azo0568,EnsemblGenomes-Tr:CAL93185,GOA:A1K2Y0,InterPro:IPR003594,InterPro:IPR005467,InterPro:IPR007891,InterPro:IPR011712,UniProtKB/TrEMBL:A1K2Y0,NCBI_GP:CAL93185.1;Name=CAL93185.1;Note=Putative sensory box histidine kinase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=vsrA;product=putative sensory box histidine kinase;protein_id=CAL93185.1;transl_table=11
AM406670.1	EMBL	gene	599710	600345	.	-	.	ID=gene573;Name=vsrD1;gbkey=Gene;gene=vsrD1;gene_biotype=protein_coding;locus_tag=azo0569
AM406670.1	EMBL	CDS	599710	600345	.	-	0	ID=cds567;Parent=gene573;Dbxref=EnsemblGenomes-Gn:azo0569,EnsemblGenomes-Tr:CAL93186,GOA:A1K2Y1,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K2Y1,NCBI_GP:CAL93186.1;Name=CAL93186.1;Note=DNA-binding response regulator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=vsrD1;product=DNA-binding response regulator;protein_id=CAL93186.1;transl_table=11
AM406670.1	EMBL	gene	600348	601409	.	-	.	ID=gene574;Name=azo0570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0570
AM406670.1	EMBL	CDS	600348	601409	.	-	0	ID=cds568;Parent=gene574;Dbxref=EnsemblGenomes-Gn:azo0570,EnsemblGenomes-Tr:CAL93187,GOA:A1K2Y2,InterPro:IPR010126,InterPro:IPR029058,UniProtKB/TrEMBL:A1K2Y2,NCBI_GP:CAL93187.1;Name=CAL93187.1;Note=Similar to TREMBL:Q89KB0 (34%25 identity)%3B TREMBL:Q8XXG5 (34%25 identity).;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93187.1;transl_table=11
AM406670.1	EMBL	gene	601691	601766	.	-	.	ID=gene575;Name=tRNA-Lys;gbkey=Gene;gene=tRNA-Lys;gene_biotype=tRNA;locus_tag=azo_tRNA_0005
AM406670.1	EMBL	tRNA	601691	601766	.	-	.	ID=rna6;Parent=gene575;anticodon=(pos:complement(601731..601733));gbkey=tRNA;gene=tRNA-Lys;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Lys
AM406670.1	EMBL	exon	601691	601766	.	-	.	ID=id7;Parent=rna6;anticodon=(pos:complement(601731..601733));gbkey=tRNA;gene=tRNA-Lys;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Lys
AM406670.1	EMBL	gene	601871	602422	.	-	.	ID=gene576;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=azo0571
AM406670.1	EMBL	CDS	601871	602422	.	-	0	ID=cds569;Parent=gene576;Dbxref=EnsemblGenomes-Gn:azo0571,EnsemblGenomes-Tr:CAL93188,GOA:A1K2Y3,InterPro:IPR002176,InterPro:IPR012337,InterPro:IPR020563,NCBI_GP:CAL93188.1;Name=CAL93188.1;Note=Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC). Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5terminal phosphate and a 3terminal hydroxyl group (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=ruvC;product=crossover junction endodeoxyribonuclease;protein_id=CAL93188.1;transl_table=11
AM406670.1	EMBL	gene	602457	602777	.	-	.	ID=gene577;Name=ybjQ;gbkey=Gene;gene=ybjQ;gene_biotype=protein_coding;locus_tag=azo0572
AM406670.1	EMBL	CDS	602457	602777	.	-	0	ID=cds570;Parent=gene577;Dbxref=EnsemblGenomes-Gn:azo0572,EnsemblGenomes-Tr:CAL93189,InterPro:IPR002765,NCBI_GP:CAL93189.1;Name=CAL93189.1;Note=Conserved hypothetical protein%2C ybjQ%2C 65%25 identity to SwissProt%3BP75819. SwiisProt%3BQ8XGV2(66%25 identity). TrEMBL%3BQ83LS2( 65%25 identity) Has PF01906%2C Domain of unknown function DUF74%3BIPR002765%3B Members of this protein family have no known function. The domain is about 100 amino acids long and found in prokaryotes.%3B~High confidence in function and specificity;gbkey=CDS;gene=ybjQ;product=conserved hypothetical protein;protein_id=CAL93189.1;transl_table=11
AM406670.1	EMBL	gene	602808	603686	.	-	.	ID=gene578;Name=azo0573;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0573
AM406670.1	EMBL	CDS	602808	603686	.	-	0	ID=cds571;Parent=gene578;Dbxref=EnsemblGenomes-Gn:azo0573,EnsemblGenomes-Tr:CAL93190,GOA:A1K2Y5,InterPro:IPR000620,UniProtKB/TrEMBL:A1K2Y5,NCBI_GP:CAL93190.1;Name=CAL93190.1;Note=Conserved hypothetical membrane protein. Hamology to PA3358 of P. aeruginosa of 56%25 InterPro: Integral membrane protein DUF6 Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transporter Pfam: Integral membrane protein DUF6 no signal peptide probable 10 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93190.1;transl_table=11
AM406670.1	EMBL	gene	603781	604506	.	-	.	ID=gene579;Name=yebC;gbkey=Gene;gene=yebC;gene_biotype=protein_coding;locus_tag=azo0574
AM406670.1	EMBL	CDS	603781	604506	.	-	0	ID=cds572;Parent=gene579;Dbxref=EnsemblGenomes-Gn:azo0574,EnsemblGenomes-Tr:CAL93191,GOA:A1K2Y6,InterPro:IPR002876,InterPro:IPR017856,InterPro:IPR026563,InterPro:IPR026564,InterPro:IPR029072,NCBI_GP:CAL93191.1;Name=CAL93191.1;Note=Conserved hypothetical protein%2CyebC%2C48%25 identity (63%25 similarity) to SwissProt%3BQ8FGR1%2CP24237%2CQ8XFD4. TrEMBL%3BQ9S4S9. Has PF01709%2C Domain of unknown function DUF28%3BIPR002876%3B This domain is found in bacterial and yeast proteins it compromises the entire length or central region of most of the proteins in the family%2C all of which are hypothetical with no known function. The average length of this domain is approximately 230 amino acids long.%3B~High confidence in function and specificity;gbkey=CDS;gene=yebC;product=conserved hypothetical protein;protein_id=CAL93191.1;transl_table=11
AM406670.1	EMBL	gene	604637	605281	.	+	.	ID=gene580;Name=azo0575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0575
AM406670.1	EMBL	CDS	604637	605281	.	+	0	ID=cds573;Parent=gene580;Dbxref=EnsemblGenomes-Gn:azo0575,EnsemblGenomes-Tr:CAL93192,UniProtKB/TrEMBL:A1K2Y7,NCBI_GP:CAL93192.1;Name=CAL93192.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide Present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93192.1;transl_table=11
AM406670.1	EMBL	gene	605320	606831	.	+	.	ID=gene581;Name=azo0576;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0576
AM406670.1	EMBL	CDS	605320	606831	.	+	0	ID=cds574;Parent=gene581;Dbxref=EnsemblGenomes-Gn:azo0576,EnsemblGenomes-Tr:CAL93193,InterPro:IPR008571,InterPro:IPR027417,UniProtKB/TrEMBL:A1K2Y8,NCBI_GP:CAL93193.1;Name=CAL93193.1;Note=Conserved hypothetical protein. Homology to yjgR of E. coli of 66%25 (sprot|YJGR_ECOLI). no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93193.1;transl_table=11
AM406670.1	EMBL	gene	606869	607759	.	-	.	ID=gene582;Name=gstR2;gbkey=Gene;gene=gstR2;gene_biotype=protein_coding;locus_tag=azo0577
AM406670.1	EMBL	CDS	606869	607759	.	-	0	ID=cds575;Parent=gene582;Dbxref=EnsemblGenomes-Gn:azo0577,EnsemblGenomes-Tr:CAL93194,GOA:A1K2Y9,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K2Y9,NCBI_GP:CAL93194.1;Name=CAL93194.1;Note=Probable transcriptional regulator%2C LysR family%2C%3B~Family membership;gbkey=CDS;gene=gstR2;product=probable transcriptional regulator%2C LysR family;protein_id=CAL93194.1;transl_table=11
AM406670.1	EMBL	gene	607889	609352	.	+	.	ID=gene583;Name=emrY;gbkey=Gene;gene=emrY;gene_biotype=protein_coding;locus_tag=azo0578
AM406670.1	EMBL	CDS	607889	609352	.	+	0	ID=cds576;Parent=gene583;Dbxref=EnsemblGenomes-Gn:azo0578,EnsemblGenomes-Tr:CAL93195,GOA:A1K2Z0,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K2Z0,NCBI_GP:CAL93195.1;Name=CAL93195.1;Note=Multidrug resistance protein B homolog. TRANSLOCASE THAT CONFERS RESISTANCE TO SUBSTANCES OF HIGH HYDROPHOBICITY (BY SIMILARITY). Presence of signal peptide and 14 transmembrane helices. Presence of DUF domains%2CCbiM%2C and bacterial cytochrome ubiquinol oxidase like domains efflux_EmrB: drug resistance transport%3B~High confidence in function and specificity;gbkey=CDS;gene=emrY;product=multidrug resistence transmembrane protein;protein_id=CAL93195.1;transl_table=11
AM406670.1	EMBL	gene	609429	610385	.	+	.	ID=gene584;Name=azo0579;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0579
AM406670.1	EMBL	CDS	609429	610385	.	+	0	ID=cds577;Parent=gene584;Dbxref=EnsemblGenomes-Gn:azo0579,EnsemblGenomes-Tr:CAL93196,GOA:A1K2Z1,InterPro:IPR000620,UniProtKB/TrEMBL:A1K2Z1,NCBI_GP:CAL93196.1;Name=CAL93196.1;Note=Conserved hypothetical membrane protein. Homology to RSc2187 of R. solanacerarum of 44%25. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transporter Pfam: Intergral membrane protein DUF6 no signal peptide probable 6 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93196.1;transl_table=11
AM406670.1	EMBL	gene	610477	612138	.	+	.	ID=gene585;Name=azo0580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0580
AM406670.1	EMBL	CDS	610477	612138	.	+	0	ID=cds578;Parent=gene585;Dbxref=EnsemblGenomes-Gn:azo0580,EnsemblGenomes-Tr:CAL93197,GOA:A1K2Z2,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR024478,UniProtKB/TrEMBL:A1K2Z2,NCBI_GP:CAL93197.1;Name=CAL93197.1;Note=Putative methyl-accepting chemotaxis transducer%2CChmtaxis_transd. Pfam: PF00015%3B MCPsignal. SMART: SM00283%3B MA. Signal P reporting signal peptide. TMHMM reporting 1 transmembrane helices. Methyl-accepting chemotaxis serine transducer. CHEMOTACTIC-SIGNAL TRANSDUCERS RESPOND TO CHANGES IN THE CONCENTRATION OF ATTRACTANTS AND REPELLENTS IN THE ENVIRONMENT TRANSDUCE A SIGNAL FROM THE OUTSIDE TO THE INSIDE OF THE CELL AND FACILITATE SENSORY ADAPTATION THROUGH THE VARIATION OF THE LEVEL OF METHYLATION. ATTRACTANTS INCREASE THE LEVEL OF METHYLATION WHILE REPELLENTS DECREASE THE LEVEL OF METHYLATION THE METHYL GROUPS ARE ADDED BY THE METHYLTRANSFERASE CHER AND REMOVED BY THE METHYLESTERASE CHEB. recN: DNA repair protein RecN%3B~Specificity unclear;gbkey=CDS;product=putative methyl-accepting chemotaxis transducer;protein_id=CAL93197.1;transl_table=11
AM406670.1	EMBL	gene	612146	613330	.	-	.	ID=gene586;Name=araJ;gbkey=Gene;gene=araJ;gene_biotype=protein_coding;locus_tag=azo0581
AM406670.1	EMBL	CDS	612146	613330	.	-	0	ID=cds579;Parent=gene586;Dbxref=EnsemblGenomes-Gn:azo0581,EnsemblGenomes-Tr:CAL93198,GOA:A1K2Z3,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K2Z3,NCBI_GP:CAL93198.1;Name=CAL93198.1;Note=May be involved in either the transport or processing of arabinose polymers.Belongs to the major facilitator superfamily. 36%25 MFS.IPR005828%3B Sub_transporter. TMhelix:12.%3B~High confidence in function and specificity;gbkey=CDS;gene=araJ;product=putative transmembrane efflux precursor protein;protein_id=CAL93198.1;transl_table=11
AM406670.1	EMBL	gene	613443	614654	.	-	.	ID=gene587;Name=azo0582;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0582
AM406670.1	EMBL	CDS	613443	614654	.	-	0	ID=cds580;Parent=gene587;Dbxref=EnsemblGenomes-Gn:azo0582,EnsemblGenomes-Tr:CAL93199,GOA:A1K2Z4,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K2Z4,NCBI_GP:CAL93199.1;Name=CAL93199.1;Note=Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 25%25 MFS.IPR005828%3B Sub_transporter.IPR005829%3B Sug_transporter.InterPro: General substrate transporters Pfam:PF00083%3B sugar_tr%3B 1. TMHelix: 12%3B~Specificity unclear;gbkey=CDS;product=putative permeases of the major facilitator superfamily;protein_id=CAL93199.1;transl_table=11
AM406670.1	EMBL	gene	614751	615716	.	+	.	ID=gene588;Name=lysR;gbkey=Gene;gene=lysR;gene_biotype=protein_coding;locus_tag=azo0583
AM406670.1	EMBL	CDS	614751	615716	.	+	0	ID=cds581;Parent=gene588;Dbxref=EnsemblGenomes-Gn:azo0583,EnsemblGenomes-Tr:CAL93200,GOA:A1K2Z5,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K2Z5,NCBI_GP:CAL93200.1;Name=CAL93200.1;Note=Putative transcriptional regulator%2C LysR family%2C%3B~Family membership;gbkey=CDS;gene=lysR;product=putative transcriptional regulator%2C LysR family;protein_id=CAL93200.1;transl_table=11
AM406670.1	EMBL	gene	615741	616574	.	-	.	ID=gene589;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=azo0584
AM406670.1	EMBL	CDS	615741	616574	.	-	0	ID=cds582;Parent=gene589;Dbxref=EnsemblGenomes-Gn:azo0584,EnsemblGenomes-Tr:CAL93201,GOA:A1K2Z6,InterPro:IPR003171,InterPro:IPR004620,InterPro:IPR029041,UniProtKB/TrEMBL:A1K2Z6,NCBI_GP:CAL93201.1;Name=CAL93201.1;Note=510-methylenetetrahydrofolate reductase InterPro: Methylenetetrahydrofolate reductase fadh2: 510-methylenetetrahydrofolate reductase%3B~High confidence in function and specificity;gbkey=CDS;gene=metF;product=5%2C10-methylenetetrahydrofolate reductase (FADH2;protein_id=CAL93201.1;transl_table=11
AM406670.1	EMBL	gene	616561	617238	.	-	.	ID=gene590;Name=tlyA;gbkey=Gene;gene=tlyA;gene_biotype=protein_coding;locus_tag=azo0585
AM406670.1	EMBL	CDS	616561	617238	.	-	0	ID=cds583;Parent=gene590;Dbxref=EnsemblGenomes-Gn:azo0585,EnsemblGenomes-Tr:CAL93202,GOA:A1K2Z7,InterPro:IPR002877,InterPro:IPR002942,InterPro:IPR004538,InterPro:IPR029063,UniProtKB/TrEMBL:A1K2Z7,NCBI_GP:CAL93202.1;Name=CAL93202.1;Note=Probable hemolysin.46%25 identity to TrEMBL%3BQ7NQ39. Has PF01728%2C FtsJ-like methyltransferase%3B IPR002877%2CRrmJFtsJ_mtfrase%3B This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase%2C but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.%3B~High confidence in function and specificity;gbkey=CDS;gene=tlyA;product=conserved hypothetical protein;protein_id=CAL93202.1;transl_table=11
AM406670.1	EMBL	gene	617454	617696	.	-	.	ID=gene591;Name=azo0586;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0586
AM406670.1	EMBL	CDS	617454	617696	.	-	0	ID=cds584;Parent=gene591;Dbxref=EnsemblGenomes-Gn:azo0586,EnsemblGenomes-Tr:CAL93203,UniProtKB/TrEMBL:A1K2Z8,NCBI_GP:CAL93203.1;Name=CAL93203.1;Note=Hypothetical protein. Weak Homology with hits in the Database. No domains%2C repeats%2C motifs or features could be predicted above threshold value.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL93203.1;transl_table=11
AM406670.1	EMBL	gene	617790	619199	.	-	.	ID=gene592;Name=acyH;gbkey=Gene;gene=acyH;gene_biotype=protein_coding;locus_tag=azo0587
AM406670.1	EMBL	CDS	617790	619199	.	-	0	ID=cds585;Parent=gene592;Dbxref=EnsemblGenomes-Gn:azo0587,EnsemblGenomes-Tr:CAL93204,GOA:A1K2Z9,InterPro:IPR000043,InterPro:IPR015878,InterPro:IPR016040,InterPro:IPR020082,UniProtKB/TrEMBL:A1K2Z9,NCBI_GP:CAL93204.1;Name=CAL93204.1;Note=Adenosylhomocysteinase. InterPro: S-adenosyl-L-homocysteine hydrolase ahcY: adenosylhomocysteinase%3B~High confidence in function and specificity;gbkey=CDS;gene=acyH;product=Adenosylhomocysteinase;protein_id=CAL93204.1;transl_table=11
AM406670.1	EMBL	gene	619475	620047	.	+	.	ID=gene593;Name=azo0588;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0588
AM406670.1	EMBL	CDS	619475	620047	.	+	0	ID=cds586;Parent=gene593;Dbxref=EnsemblGenomes-Gn:azo0588,EnsemblGenomes-Tr:CAL93205,UniProtKB/TrEMBL:A1K300,NCBI_GP:CAL93205.1;Name=CAL93205.1;Note=Conserved hypothetical secreted protein. Homology to PA0776 of Pseudomonas aeruginosa of 30%25 (trembl|Q9I5G2(SRS)) No domains predicted Signal Peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93205.1;transl_table=11
AM406670.1	EMBL	gene	620087	621253	.	-	.	ID=gene594;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;locus_tag=azo0589
AM406670.1	EMBL	CDS	620087	621253	.	-	0	ID=cds587;Parent=gene594;Dbxref=EnsemblGenomes-Gn:azo0589,EnsemblGenomes-Tr:CAL93206,GOA:A1K301,InterPro:IPR002133,InterPro:IPR022628,InterPro:IPR022629,InterPro:IPR022630,InterPro:IPR022631,InterPro:IPR022636,NCBI_GP:CAL93206.1;Name=CAL93206.1;Note=S-adenosylmethionine synthetase (EC 2.5.1.6) (AdoMet synthetase) (MAT). Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (By similarity). InterPro: S-adenosylmethionine synthetase%3B~High confidence in function and specificity;gbkey=CDS;gene=metK;product=methionine adenosyltransferase;protein_id=CAL93206.1;transl_table=11
AM406670.1	EMBL	gene	621534	622355	.	+	.	ID=gene595;Name=htrB;gbkey=Gene;gene=htrB;gene_biotype=protein_coding;locus_tag=azo0590
AM406670.1	EMBL	CDS	621534	622355	.	+	0	ID=cds588;Parent=gene595;Dbxref=EnsemblGenomes-Gn:azo0590,EnsemblGenomes-Tr:CAL93207,GOA:A1K302,InterPro:IPR004960,UniProtKB/TrEMBL:A1K302,NCBI_GP:CAL93207.1;Name=CAL93207.1;Note=Putative lipid A biosynthesis lauroyl acyltransferase. Homology to htrB of E. coli of 27%25 (sprot|HTRB_ECOLI) ACYLATES THE INTERMEDIATE (KDO)2-LIPID IVA TO FORM (KDO)2-(LAUROYL)-LIPID IVA. HAS 10 FOLD SELECTIVITY FOR LAUROYL- ACP OVER MYRISTOYL-ACP. Pfam: Bacterial lipid A biosynthesis acyltransferase no singal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=htrB;product=putative lipid A biosynthesis lauroyl acyltransferase;protein_id=CAL93207.1;transl_table=11
AM406670.1	EMBL	gene	622384	623160	.	+	.	ID=gene596;Name=msbBa;gbkey=Gene;gene=msbBa;gene_biotype=protein_coding;locus_tag=azo0591
AM406670.1	EMBL	CDS	622384	623160	.	+	0	ID=cds589;Parent=gene596;Dbxref=EnsemblGenomes-Gn:azo0591,EnsemblGenomes-Tr:CAL93208,GOA:A1K303,InterPro:IPR004960,UniProtKB/TrEMBL:A1K303,NCBI_GP:CAL93208.1;Name=CAL93208.1;Note=Putative Lipid A biosynthesis acyltransferase protein Homology to msbB of of E. coli of 27%25 (AAA24181). Homology only with the N-terminus. no signal peptide. 1 TMH. Tigrfam: lipid_A_htrB%2C lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. Pfam: Lip_A_acyltrans%2CBacterial lipid A biosynthesis acyltransferase.%3B~Family membership;gbkey=CDS;gene=msbBa;product=putative lipid A biosynthesis acyltransferase%2Ctruncated;protein_id=CAL93208.1;transl_table=11
AM406670.1	EMBL	gene	623157	623261	.	+	.	ID=gene597;Name=msbBb;gbkey=Gene;gene=msbBb;gene_biotype=protein_coding;locus_tag=azo0592
AM406670.1	EMBL	CDS	623157	623261	.	+	0	ID=cds590;Parent=gene597;Dbxref=EnsemblGenomes-Gn:azo0592,EnsemblGenomes-Tr:CAL93209,GOA:A1K304,InterPro:IPR004960,UniProtKB/TrEMBL:A1K304,NCBI_GP:CAL93209.1;Name=CAL93209.1;Note=Putative Lipid A biosynthesis acyltransferase protein Homology to.msbB of of E. coli of 27%25 (AAA24181). Homology only with the N-terminus. no signal peptide. 1 TMH. Tigrfam: lipid_A_htrB%2C lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. Pfam: Lip_A_acyltrans%2CBacterial lipid A biosynthesis acyltransferase.%3B~Function unclear;gbkey=CDS;gene=msbBb;product=putative lipid A biosynthesis acyltransferase%2Ctruncated;protein_id=CAL93209.1;transl_table=11
AM406670.1	EMBL	gene	623255	623521	.	-	.	ID=gene598;Name=azo0593;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0593
AM406670.1	EMBL	CDS	623255	623521	.	-	0	ID=cds591;Parent=gene598;Dbxref=EnsemblGenomes-Gn:azo0593,EnsemblGenomes-Tr:CAL93210,UniProtKB/TrEMBL:A1K305,NCBI_GP:CAL93210.1;Name=CAL93210.1;Note=Conserved hypothetical membrane protein. Homology to Daro03000819 of Dechloromonas aromatica of 32%25 (gi|46140899|ref|ZP_00152594.2|(NBCI ENTREZ)). No domains predicted. signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93210.1;transl_table=11
AM406670.1	EMBL	gene	623683	624516	.	+	.	ID=gene599;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=azo0594
AM406670.1	EMBL	CDS	623683	624516	.	+	0	ID=cds592;Parent=gene599;Dbxref=EnsemblGenomes-Gn:azo0594,EnsemblGenomes-Tr:CAL93211,GOA:A1K306,InterPro:IPR001653,InterPro:IPR018510,NCBI_GP:CAL93211.1;Name=CAL93211.1;Note=Diaminopimelate epimerase catalyzes the isomeriazation of L%2CL- to D%2CL-meso-diaminopimelate in the biosynthetic pathway leading from aspartate to lysine. This enzyme is a protein of about 30 kDa. Two conserved cysteines seem to function as the acid and base in the catalytic mechanism. Similar to TREMBL:Q82U84 (58%25). Pfam (PF01678): Diaminopimelate epimerase TIGRfam (TIGR00652): Diaminopimelate epimerase%3B~High confidence in function and specificity;gbkey=CDS;gene=dapF;product=DapF protein;protein_id=CAL93211.1;transl_table=11
AM406670.1	EMBL	gene	624557	625210	.	+	.	ID=gene600;Name=azo0595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0595
AM406670.1	EMBL	CDS	624557	625210	.	+	0	ID=cds593;Parent=gene600;Dbxref=EnsemblGenomes-Gn:azo0595,EnsemblGenomes-Tr:CAL93212,GOA:A1K307,InterPro:IPR003018,InterPro:IPR007435,InterPro:IPR029016,UniProtKB/TrEMBL:A1K307,NCBI_GP:CAL93212.1;Name=CAL93212.1;Note=Conserved hypothetical protein. Coils2 Program reporting presence of 1 Coiled-Coil. Has SMART%3BSM00065%2CGAF domain%3BThis domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3'%2C5'-cyclic phosphodiesterase catalyses the conversion of guanosine 3'%2C5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light%2C the PR form that absorbs maximally in the red region of the spectrum%2C and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA%2C a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.%3B~Specificity unclear;gbkey=CDS;product=3'%2C5'-cyclic-nucleotide phosphodiesterase;protein_id=CAL93212.1;transl_table=11
AM406670.1	EMBL	gene	625290	626201	.	+	.	ID=gene601;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=azo0596
AM406670.1	EMBL	CDS	625290	626201	.	+	0	ID=cds594;Parent=gene601;Dbxref=EnsemblGenomes-Gn:azo0596,EnsemblGenomes-Tr:CAL93213,GOA:A1K308,InterPro:IPR002104,InterPro:IPR004107,InterPro:IPR011010,InterPro:IPR013762,InterPro:IPR023009,InterPro:IPR023109,UniProtKB/TrEMBL:A1K308,NCBI_GP:CAL93213.1;Name=CAL93213.1;Note=Tyrosine recombinase xerC. Site-specific tyrosine recombinase which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerD binding sites by a short central region forming the heterotetrameric xerC-xerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids at ColE1 xer (or cer) and pSC101 (or psi) sites. In the complex xerC specifically exchanges the top DNA strands (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=xerC;product=site-specific recombinase;protein_id=CAL93213.1;transl_table=11
AM406670.1	EMBL	gene	626345	626848	.	+	.	ID=gene602;Name=azo0597;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0597
AM406670.1	EMBL	CDS	626345	626848	.	+	0	ID=cds595;Parent=gene602;Dbxref=EnsemblGenomes-Gn:azo0597,EnsemblGenomes-Tr:CAL93214,InterPro:IPR011991,UniProtKB/TrEMBL:A1K309,NCBI_GP:CAL93214.1;Name=CAL93214.1;Note=Conserved hypothetical protein. Homology to ebA3954 of Azoarcus sp. EbN1 of 56%25 (gnl|keqq|eba:ebA3954(KEGG)). No domains predictied. No signal peptide. No TMHs. helix-turn-helix present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93214.1;transl_table=11
AM406670.1	EMBL	gene	626914	628101	.	+	.	ID=gene603;Name=azo0598;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0598
AM406670.1	EMBL	CDS	626914	628101	.	+	0	ID=cds596;Parent=gene603;Dbxref=EnsemblGenomes-Gn:azo0598,EnsemblGenomes-Tr:CAL93215,GOA:A1K310,InterPro:IPR002478,InterPro:IPR015947,InterPro:IPR019614,InterPro:IPR029063,UniProtKB/TrEMBL:A1K310,NCBI_GP:CAL93215.1;Name=CAL93215.1;Note=Hypothetical protein yccW TREMBL:Q8Y3C9: 52%25 identity%2C 62%25 similarity. InterPro%3B IPR002478%3B PUA. InterPro%3B IPR000051%3B SAM_bind. Pfam:Met_1:Met-10+ like-protein SMART%3B SM00359 TIGR00095: conserved hypothetical protein No transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;product=probable SAM dependent methyl transferase;protein_id=CAL93215.1;transl_table=11
AM406670.1	EMBL	gene	628098	628448	.	-	.	ID=gene604;Name=azo0599;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0599
AM406670.1	EMBL	CDS	628098	628448	.	-	0	ID=cds597;Parent=gene604;Dbxref=EnsemblGenomes-Gn:azo0599,EnsemblGenomes-Tr:CAL93216,UniProtKB/TrEMBL:A1K311,NCBI_GP:CAL93216.1;Name=CAL93216.1;Note=Conserved hypothetical membrane protein. Homology to ebA3957 of Azoarcus sp. EbN1 of 38%25 (gnl|keqq|eba:ebA3957(KEGG)). No domains predicted. signal peptide. 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93216.1;transl_table=11
AM406670.1	EMBL	gene	628448	628666	.	-	.	ID=gene605;Name=azo0600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0600
AM406670.1	EMBL	CDS	628448	628666	.	-	0	ID=cds598;Parent=gene605;Dbxref=EnsemblGenomes-Gn:azo0600,EnsemblGenomes-Tr:CAL93217,UniProtKB/TrEMBL:A1K312,NCBI_GP:CAL93217.1;Name=CAL93217.1;Note=Hypothetical secreted protein. no homology of the entire protein to the data bank. no domains predicted. signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93217.1;transl_table=11
AM406670.1	EMBL	gene	628671	629729	.	-	.	ID=gene606;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=azo0601
AM406670.1	EMBL	CDS	628671	629729	.	-	0	ID=cds599;Parent=gene606;Dbxref=EnsemblGenomes-Gn:azo0601,EnsemblGenomes-Tr:CAL93218,GOA:A1K313,InterPro:IPR003593,InterPro:IPR004605,InterPro:IPR008823,InterPro:IPR008824,InterPro:IPR011991,InterPro:IPR027417,NCBI_GP:CAL93218.1;Name=CAL93218.1;Note=Holliday junction DNA helicase ruvB. The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday junction migration by localized denaturation and reanneling (By similarity). InterPro: Holliday junction DNA helicase RuvB%3B~High confidence in function and specificity;gbkey=CDS;gene=ruvB;product=holliday junction DNA helicase;protein_id=CAL93218.1;transl_table=11
AM406670.1	EMBL	gene	629785	630384	.	-	.	ID=gene607;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=azo0602
AM406670.1	EMBL	CDS	629785	630384	.	-	0	ID=cds600;Parent=gene607;Dbxref=EnsemblGenomes-Gn:azo0602,EnsemblGenomes-Tr:CAL93219,GOA:A1K314,InterPro:IPR000085,InterPro:IPR003583,InterPro:IPR010994,InterPro:IPR011114,InterPro:IPR012340,InterPro:IPR013849,NCBI_GP:CAL93219.1;Name=CAL93219.1;Note=Holliday junction DNA helicase ruvA. The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday junction migration by localized denaturation and reanneling. RuvA stimulates in the presence of DNA the weak ATPase activity of ruvB (By similarity). InterPro: Bacterial DNA recombination protein RuvA%3B~High confidence in function and specificity;gbkey=CDS;gene=ruvA;product=holliday junction DNA helicase;protein_id=CAL93219.1;transl_table=11
AM406670.1	EMBL	gene	630563	631267	.	+	.	ID=gene608;Name=azo0603;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0603
AM406670.1	EMBL	CDS	630563	631267	.	+	0	ID=cds601;Parent=gene608;Dbxref=EnsemblGenomes-Gn:azo0603,EnsemblGenomes-Tr:CAL93220,InterPro:IPR011606,UniProtKB/TrEMBL:A1K315,NCBI_GP:CAL93220.1;Name=CAL93220.1;Note=Conserved hypothetical membrane protein. Homology to BP3397 of B. pertussis of 41%25 (bpe:BP3397(KEGG)). Tigrfam: azlC: azlC protein (azlC). 6 TMHs no signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93220.1;transl_table=11
AM406670.1	EMBL	gene	631264	631590	.	+	.	ID=gene609;Name=azo0604;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0604
AM406670.1	EMBL	CDS	631264	631590	.	+	0	ID=cds602;Parent=gene609;Dbxref=EnsemblGenomes-Gn:azo0604,EnsemblGenomes-Tr:CAL93221,InterPro:IPR008407,UniProtKB/TrEMBL:A1K316,NCBI_GP:CAL93221.1;Name=CAL93221.1;Note=Conserved hypothetical membrane protein. Homology to RS04896 of Ralstonia solanacearum o 43%25 (trembl|Q8Y1W8) Has PF06063%2C Domain of unknown function (DUF931)%3BIPR010337%3BFamily of transmembrane proteins with undetermined function. singal peptide. 2 THMs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93221.1;transl_table=11
AM406670.1	EMBL	gene	631597	631851	.	-	.	ID=gene610;Name=azo0605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0605
AM406670.1	EMBL	CDS	631597	631851	.	-	0	ID=cds603;Parent=gene610;Dbxref=EnsemblGenomes-Gn:azo0605,EnsemblGenomes-Tr:CAL93222,GOA:A1K317,InterPro:IPR007167,InterPro:IPR008988,UniProtKB/TrEMBL:A1K317,NCBI_GP:CAL93222.1;Name=CAL93222.1;Note=Hypothetical protein. Homology to Daro03002672 of Dechloromonas aromatica of 51%25 (gi|41723577|ref|ZP_00150487.1|(NBCI ENTREZ)). Has PF04023%2C FeoA domain%3BIPR007167%3B This family includes FeoA a small protein%2C probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93222.1;transl_table=11
AM406670.1	EMBL	gene	631860	633851	.	-	.	ID=gene611;Name=feoB;gbkey=Gene;gene=feoB;gene_biotype=protein_coding;locus_tag=azo0606
AM406670.1	EMBL	CDS	631860	633851	.	-	0	ID=cds604;Parent=gene611;Dbxref=EnsemblGenomes-Gn:azo0606,EnsemblGenomes-Tr:CAL93223,GOA:A1K318,InterPro:IPR003373,InterPro:IPR006073,InterPro:IPR011619,InterPro:IPR011640,InterPro:IPR011642,InterPro:IPR027417,UniProtKB/TrEMBL:A1K318,NCBI_GP:CAL93223.1;Name=CAL93223.1;Note=Ferrous iron transport protein B%2C FeoB.Probable GTP-driven transporter of ferrous ion.Invovled in iron II uptake. 29%25 FeoB.IPR005289%3B GTP-bindding_dom.IPR005225%3B Small_GTP. Pfam:PF02421%3B FeoB%3B 1.TIGRFAMs TIGR00437%3B feoB%3B 1.TIGR00650%3B MG442%3B 1. TIGR00231%3B small_GTP%3B 1. TMHelix:12 Siganl pepetide present.%3B~High confidence in function and specificity;gbkey=CDS;gene=feoB;product=putative ferrous iron transport protein B;protein_id=CAL93223.1;transl_table=11
AM406670.1	EMBL	gene	634049	636247	.	+	.	ID=gene612;Name=azo0607;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0607
AM406670.1	EMBL	CDS	634049	636247	.	+	0	ID=cds605;Parent=gene612;Dbxref=EnsemblGenomes-Gn:azo0607,EnsemblGenomes-Tr:CAL93224,GOA:A1K319,InterPro:IPR000531,InterPro:IPR010105,InterPro:IPR012910,UniProtKB/TrEMBL:A1K319,NCBI_GP:CAL93224.1;Name=CAL93224.1;Note=Outer membrane TonB-dependent%2C hydroxamate-type ferrisiderophore receptor. Probably involved in iron transport. 30%25 TONB_C.IPR000531%3B TonB_receptor.IPR010105%3B TonB_siderophor. InterPro: TonB-dependent receptor protein Pfam:PF00593%3B TonB_dep_Rec%3B 1. TIGRFAMs:TIGR01783%3B TonB-siderophor%3B 1. Signal peptide present.%3B~High confidence in function and specificity;gbkey=CDS;product=putative TonB-dependent receptor;protein_id=CAL93224.1;transl_table=11
AM406670.1	EMBL	gene	636324	637007	.	+	.	ID=gene613;Name=ybiX;gbkey=Gene;gene=ybiX;gene_biotype=protein_coding;locus_tag=azo0608
AM406670.1	EMBL	CDS	636324	637007	.	+	0	ID=cds606;Parent=gene613;Dbxref=EnsemblGenomes-Gn:azo0608,EnsemblGenomes-Tr:CAL93225,GOA:A1K320,InterPro:IPR005123,InterPro:IPR006620,InterPro:IPR023550,NCBI_GP:CAL93225.1;Name=CAL93225.1;Note=Putative PKHD-type hydroxylase protein%2C 69%25 Identity(82%25 simialrity) to SwissProt%3BP59727%2CQ8FJM69%2C (48%25 identity) Has SMART%3BSM00702%2C P4Hc%2CProlyl 4-hydroxylase alpha subunit homologues: IPR006620%3B Pro_4_hyd_alph%3B Mammalian enzymes catalyse hydroxylation of collagen%2C for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases%2C requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor. Has PF03171%2C2OG-Fe(II) oxygenase superfamily%3BIPR005123%3BThis family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily. This family includes the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 <%3D> procollagen trans- 4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site. The family also includes lysyl hydrolases%2Cisopenicillin synthases and AlkB.%3B~High confidence in function and specificity;gbkey=CDS;gene=ybiX;product=putative PKHD-type hydroxylase;protein_id=CAL93225.1;transl_table=11
AM406670.1	EMBL	gene	637000	638121	.	+	.	ID=gene614;Name=gox;gbkey=Gene;gene=gox;gene_biotype=protein_coding;locus_tag=azo0609
AM406670.1	EMBL	CDS	637000	638121	.	+	0	ID=cds607;Parent=gene614;Dbxref=EnsemblGenomes-Gn:azo0609,EnsemblGenomes-Tr:CAL93226,GOA:A1K321,InterPro:IPR000262,InterPro:IPR012133,InterPro:IPR013785,UniProtKB/TrEMBL:A1K321,NCBI_GP:CAL93226.1;Name=CAL93226.1;Note=Probable (S)-2-hydroxy-acid oxidase. Homology to gox of S. oleracea (spinach) of 42%25 (sprot|GOX_SPIOL). CATALYTIC ACTIVITY: (S)-2-hydroxy-acid + O(2) %3D 2-oxo acid + H(2)O(2). InterPro: FMN-dependent alpha-hydroxy acid dehydrogenases (IPR000262)%3B Protein binding FMN and related compounds core region (IPR003009) Pfam: FMN-dependent dehydrogenase no signal peptide no TMHs guaA_Cterm: GMP synthase C-terminal d%3B~Family membership;gbkey=CDS;gene=gox;product=probable (S)-2-hydroxy-acid oxidase;protein_id=CAL93226.1;transl_table=11
AM406670.1	EMBL	gene	638132	639553	.	-	.	ID=gene615;Name=oprM2;gbkey=Gene;gene=oprM2;gene_biotype=protein_coding;locus_tag=azo0610
AM406670.1	EMBL	CDS	638132	639553	.	-	0	ID=cds608;Parent=gene615;Dbxref=EnsemblGenomes-Gn:azo0610,EnsemblGenomes-Tr:CAL93227,GOA:A1K322,InterPro:IPR003423,InterPro:IPR010131,UniProtKB/TrEMBL:A1K322,NCBI_GP:CAL93227.1;Name=CAL93227.1;Note=Putative outer membrane efflux protein. Homology to orpM in P. aeruginosa of 36%25. Component of an efflux system that confers multidrug or multible antibiotic resistence. Interpro: Outer membran efflux protein Pfam: Outer membran efflux protein signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=oprM2;product=putative outer membrane efflux protein;protein_id=CAL93227.1;transl_table=11
AM406670.1	EMBL	gene	639568	641538	.	-	.	ID=gene616;Name=macB;gbkey=Gene;gene=macB;gene_biotype=protein_coding;locus_tag=azo0611
AM406670.1	EMBL	CDS	639568	641538	.	-	0	ID=cds609;Parent=gene616;Dbxref=EnsemblGenomes-Gn:azo0611,EnsemblGenomes-Tr:CAL93228,GOA:A1K323,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR003838,InterPro:IPR017871,InterPro:IPR017911,InterPro:IPR025857,InterPro:IPR027417,NCBI_GP:CAL93228.1;Name=CAL93228.1;Note=Putative efflux transporter for macrolide antibiotics%2C TREMBL:Q92NU9 (57%25 identity)%3B TREMBL:Q884D4 (49%25 identity). Pfam (PF00005): ABC transporter. Pfam (DUF214): Predicted permease. TMHMM reporting four transmembrane helices. TC (3.A.1.122): The Macrolide Exporter Family.%3B~Specificity unclear;gbkey=CDS;gene=macB;product=ATP-binding/permease fusion ABC transporter;protein_id=CAL93228.1;transl_table=11
AM406670.1	EMBL	gene	641535	642686	.	-	.	ID=gene617;Name=macA;gbkey=Gene;gene=macA;gene_biotype=protein_coding;locus_tag=azo0612
AM406670.1	EMBL	CDS	641535	642686	.	-	0	ID=cds610;Parent=gene617;Dbxref=EnsemblGenomes-Gn:azo0612,EnsemblGenomes-Tr:CAL93229,GOA:A1K324,InterPro:IPR006143,UniProtKB/TrEMBL:A1K324,NCBI_GP:CAL93229.1;Name=CAL93229.1;Note=Macrolide-specific efflux protein macA precursor. Efflux transporter for macrolide antibiotics (By similarity). Membrane Fusion Protein (MFP) family.%3B~High confidence in function and specificity;gbkey=CDS;gene=macA;product=periplasmic component of efflux system;protein_id=CAL93229.1;transl_table=11
AM406670.1	EMBL	gene	642997	643413	.	-	.	ID=gene618;Name=exbD3;gbkey=Gene;gene=exbD3;gene_biotype=protein_coding;locus_tag=azo0613
AM406670.1	EMBL	CDS	642997	643413	.	-	0	ID=cds611;Parent=gene618;Dbxref=EnsemblGenomes-Gn:azo0613,EnsemblGenomes-Tr:CAL93230,GOA:A1K325,InterPro:IPR003400,UniProtKB/TrEMBL:A1K325,NCBI_GP:CAL93230.1;Name=CAL93230.1;Note=Probable fiopolymer transport protein ExbD. Homology to exbD1 of X. campestris of 43%25. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=exbD3;product=probable biopolymer transport protein ExbD;protein_id=CAL93230.1;transl_table=11
AM406670.1	EMBL	gene	643413	644174	.	-	.	ID=gene619;Name=exbB2;gbkey=Gene;gene=exbB2;gene_biotype=protein_coding;locus_tag=azo0614
AM406670.1	EMBL	CDS	643413	644174	.	-	0	ID=cds612;Parent=gene619;Dbxref=EnsemblGenomes-Gn:azo0614,EnsemblGenomes-Tr:CAL93231,GOA:A1K326,InterPro:IPR002898,UniProtKB/TrEMBL:A1K326,NCBI_GP:CAL93231.1;Name=CAL93231.1;Note=Probable biopolymer transport protein ExbB. Homology to exbB of B. pertussis of 50%25 ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: MotA/TolQ/ExbB proton channel family Pfam: MotA/TolQ/ExbB proton channel family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=exbB2;product=probable biopolymer transport protein ExbB;protein_id=CAL93231.1;transl_table=11
AM406670.1	EMBL	gene	644177	644926	.	-	.	ID=gene620;Name=tonB1;gbkey=Gene;gene=tonB1;gene_biotype=protein_coding;locus_tag=azo0615
AM406670.1	EMBL	CDS	644177	644926	.	-	0	ID=cds613;Parent=gene620;Dbxref=EnsemblGenomes-Gn:azo0615,EnsemblGenomes-Tr:CAL93232,GOA:A1K327,InterPro:IPR006260,UniProtKB/TrEMBL:A1K327,NCBI_GP:CAL93232.1;Name=CAL93232.1;Note=Putative TonB protein. Homology to tonb2 of P. aeruginosa of 39%25 (TREMBL:Q9RMT3). To complete transport of bound iron across the inner membrane%2C a second receptor complex is needed. The major component of this is tonB%2C a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors Pfam: Gram-negative bacterial TonB protein no signal peptide 1 TMH%3B~Function unclear;gbkey=CDS;gene=tonB1;product=putative TonB protein;protein_id=CAL93232.1;transl_table=11
AM406670.1	EMBL	gene	645213	645689	.	-	.	ID=gene621;Name=bfr2;gbkey=Gene;gene=bfr2;gene_biotype=protein_coding;locus_tag=azo0616
AM406670.1	EMBL	CDS	645213	645689	.	-	0	ID=cds614;Parent=gene621;Dbxref=EnsemblGenomes-Gn:azo0616,EnsemblGenomes-Tr:CAL93233,GOA:A1K328,InterPro:IPR002024,InterPro:IPR008331,InterPro:IPR009040,InterPro:IPR009078,InterPro:IPR012347,UniProtKB/TrEMBL:A1K328,NCBI_GP:CAL93233.1;Name=CAL93233.1;Note=Bacterioferritin (BFR)(Cytochrome B-1)(Cytochrome B-557).May perform analogous functions in iron detoxification and storage to that of animal ferritins.Key role in iron homeostasis. 71%25 Bacterioferritin.IPR008331%3B Ferritin_Dps.IPR009040%3B Ferritin_like. Pfam:PF00210%3B ferritin%3B 1. TIGRFAMs:TIGR00754%3B bfr%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=bfr2;product=putative bacterioferritin;protein_id=CAL93233.1;transl_table=11
AM406670.1	EMBL	gene	645686	645928	.	-	.	ID=gene622;Name=bfd;gbkey=Gene;gene=bfd;gene_biotype=protein_coding;locus_tag=azo0617
AM406670.1	EMBL	CDS	645686	645928	.	-	0	ID=cds615;Parent=gene622;Dbxref=EnsemblGenomes-Gn:azo0617,EnsemblGenomes-Tr:CAL93234,InterPro:IPR007419,UniProtKB/TrEMBL:A1K329,NCBI_GP:CAL93234.1;Name=CAL93234.1;Note=Bacterioferritin-associated ferredoxin. Homology to psto4159 of P. syringae of 33%25 (trembl|Q87XL9). SEEMS TO ASSOCIATE WITH BFR%3B COULD BE A GENERAL REDOX AND/OR REGULATORY COMPONENT PARTICIPATING IN THE IRON STORAGE MOBILIZATION FUNCTIONS OF BFR. COULD PARTICIPATE IN THE RELEASE OR THE DELIVERY OF IRON FROM/TO BACTERIOFERRITIN (OR OTHER IRON COMPLEXES). Pfam: BFD-like [2Fe-2S] binding domain no signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=bfd;product=conserved hypothetical bacterioferritin-associated ferredoxin;protein_id=CAL93234.1;transl_table=11
AM406670.1	EMBL	gene	645969	646178	.	-	.	ID=gene623;Name=azo0618;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0618
AM406670.1	EMBL	CDS	645969	646178	.	-	0	ID=cds616;Parent=gene623;Dbxref=EnsemblGenomes-Gn:azo0618,EnsemblGenomes-Tr:CAL93235,InterPro:IPR019600,UniProtKB/TrEMBL:A1K330,NCBI_GP:CAL93235.1;Name=CAL93235.1;Note=47%25 DUF1008. Pfam:PF06228%3B DUF1008%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;product=putative hemin uptake protein;protein_id=CAL93235.1;transl_table=11
AM406670.1	EMBL	gene	646348	647070	.	+	.	ID=gene624;Name=azo0619;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0619
AM406670.1	EMBL	CDS	646348	647070	.	+	0	ID=cds617;Parent=gene624;Dbxref=EnsemblGenomes-Gn:azo0619,EnsemblGenomes-Tr:CAL93236,GOA:A1K331,InterPro:IPR002529,InterPro:IPR011234,UniProtKB/TrEMBL:A1K331,NCBI_GP:CAL93236.1;Name=CAL93236.1;Note=Similar to TREMBL:Q8Y2F3 (57%25 identity)%3B TREMBL:Q7VVV4 (55%25 identity)%3B TREMBL:Q9I111 (53%25 identity). Pfam (FAA_hydrolase): Fumarylacetoacetate (FAA) hydrolase family.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93236.1;transl_table=11
AM406670.1	EMBL	gene	647080	647529	.	-	.	ID=gene625;Name=azo0620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0620
AM406670.1	EMBL	CDS	647080	647529	.	-	0	ID=cds618;Parent=gene625;Dbxref=EnsemblGenomes-Gn:azo0620,EnsemblGenomes-Tr:CAL93237,UniProtKB/TrEMBL:A1K332,NCBI_GP:CAL93237.1;Name=CAL93237.1;Note=Conserved hypothetical secreted protein. Homology to an orf of G. sulfurreducens of 34%25 (tremblnew|AAR35905(SRS)). No domains predicted. Signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93237.1;transl_table=11
AM406670.1	EMBL	gene	647516	648724	.	-	.	ID=gene626;Name=azo0621;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0621
AM406670.1	EMBL	CDS	647516	648724	.	-	0	ID=cds619;Parent=gene626;Dbxref=EnsemblGenomes-Gn:azo0621,EnsemblGenomes-Tr:CAL93238,UniProtKB/TrEMBL:A1K333,NCBI_GP:CAL93238.1;Name=CAL93238.1;Note=Conserved hypothetical secreted protein. Homology to ebA1833 of Azoarcus sp. EbN1 of 48%25 (gnl|keqq|eba:ebA1833(KEGG)). No domains predicted. Signal peptide Present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93238.1;transl_table=11
AM406670.1	EMBL	gene	648721	651168	.	-	.	ID=gene627;Name=azo0622;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0622
AM406670.1	EMBL	CDS	648721	651168	.	-	0	ID=cds620;Parent=gene627;Dbxref=EnsemblGenomes-Gn:azo0622,EnsemblGenomes-Tr:CAL93239,GOA:A1K334,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR003660,InterPro:IPR013655,InterPro:IPR029787,UniProtKB/TrEMBL:A1K334,NCBI_GP:CAL93239.1;Name=CAL93239.1;Note=Conserved hypothetical signaling protein. Homology to ebA1830 of Azoarcus sp. EbN1 of 63%25 (gnl|keqq|eba:ebA1830(KEGG)). Pfam: PF00990 GGDEF domain. PF00989 PAS domain. PF00785 PAC motif. PF00563 EAL domain. PF00672 HAMP. TIGRFAM:TIGR00229 PAS domain S-box. TIGR00254 putative diguanylate cyclase (GGDEF) domain. TMHMM reporting 2 transmembrane helices of which one is in the signal peptide. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical signaling protein;protein_id=CAL93239.1;transl_table=11
AM406670.1	EMBL	gene	651269	652651	.	-	.	ID=gene628;Name=matA;gbkey=Gene;gene=matA;gene_biotype=protein_coding;locus_tag=azo0623
AM406670.1	EMBL	CDS	651269	652651	.	-	0	ID=cds621;Parent=gene628;Dbxref=EnsemblGenomes-Gn:azo0623,EnsemblGenomes-Tr:CAL93240,GOA:A1K335,InterPro:IPR007956,UniProtKB/TrEMBL:A1K335,NCBI_GP:CAL93240.1;Name=CAL93240.1;Note=Catalyzes the conversion of malonyl-CoA to acetyl-CoA. In the fatty acid biosynthesis MCD selectively removes malonyl-CoA and thus assures that methyl-malonyl-CoA is the only chain elongating substrate for fatty acid synthase and that fatty acids with multiple methyl side chains are produced. 40%25 Malonyl_CoA_deC. Pfam:PF05292%3B MCD%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=matA;product=putative malonyl-CoA decarboxylase;protein_id=CAL93240.1;transl_table=11
AM406670.1	EMBL	gene	652780	653454	.	+	.	ID=gene629;Name=azo0624;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0624
AM406670.1	EMBL	CDS	652780	653454	.	+	0	ID=cds622;Parent=gene629;Dbxref=EnsemblGenomes-Gn:azo0624,EnsemblGenomes-Tr:CAL93241,GOA:A1K336,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR013655,UniProtKB/TrEMBL:A1K336,NCBI_GP:CAL93241.1;Name=CAL93241.1;Note=PAS/PAC-domain containing protein%2C shows good similarity only to parts of other proteins (mostly sensor kinases). This suggests that there normally should be a kinase domain and therefore the protein is not complete. Also the downstream response regulator gives a hint for this suggestion. InterPro: IPR000014 PAS_domain. IPR001610 PAC motif. TIGRFAM: TIGR00229 PAS domain S-box. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.;gbkey=CDS;product=PAS/PAC-domain containing protein;protein_id=CAL93241.1;transl_table=11
AM406670.1	EMBL	gene	653521	653943	.	+	.	ID=gene630;Name=azo0625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0625
AM406670.1	EMBL	CDS	653521	653943	.	+	0	ID=cds623;Parent=gene630;Dbxref=EnsemblGenomes-Gn:azo0625,EnsemblGenomes-Tr:CAL93242,GOA:A1K337,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1K337,NCBI_GP:CAL93242.1;Name=CAL93242.1;Note=Hypothetical two-component system response regulator%2C very low similarity to a part of YehT: SWISSPROT: sprot|YEHT_ECOLI (16%25 Escherichia coli%2C YehT) Pfam: PF00072 Response_reg.;gbkey=CDS;product=hypothetical two-component system response regulator;protein_id=CAL93242.1;transl_table=11
AM406670.1	EMBL	gene	653963	654760	.	-	.	ID=gene631;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;locus_tag=azo0626
AM406670.1	EMBL	CDS	653963	654760	.	-	0	ID=cds624;Parent=gene631;Dbxref=EnsemblGenomes-Gn:azo0626,EnsemblGenomes-Tr:CAL93243,GOA:A1K338,InterPro:IPR001640,NCBI_GP:CAL93243.1;Name=CAL93243.1;Note=Probable prolipoprotein diacylglyceryl transferase. Homology to lgt of E. coli of 47%25 (sprot|LGT_ECOLI) TRANSFERS THE N-ACYL DIGLYCERIDE GROUP ON WHAT WILL BECOME THE N-TERMINAL CYSTEINE OF MEMBRANE LIPOPROTEINS. InterPro: Prolipoprotein diacylglyceryl transferase (IPR001640) Tigrfam: lgt: prolipoprotein diacylglyceryl transferase Pfam: Prolipoprotein diacylglyceryl transferase no signal peptide 7 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=lgt;product=probable prolipoprotein diacylglyceryl transferase;protein_id=CAL93243.1;transl_table=11
AM406670.1	EMBL	gene	654774	655454	.	-	.	ID=gene632;Name=yceH;gbkey=Gene;gene=yceH;gene_biotype=protein_coding;locus_tag=azo0627
AM406670.1	EMBL	CDS	654774	655454	.	-	0	ID=cds625;Parent=gene632;Dbxref=EnsemblGenomes-Gn:azo0627,EnsemblGenomes-Tr:CAL93244,InterPro:IPR007432,InterPro:IPR011991,NCBI_GP:CAL93244.1;Name=CAL93244.1;Note=Conserved hypothetical protein%2C 47%25 identity (59%25 similarity)to TrEMBL%3BQ8FIR0.TrEMBL%3BQ83LI7 Has PF04337%2CProtein of unknown function%2C DUF480%3BIPR007432%3BThis family consists of several proteins of uncharacterised function. Coils2 program reporting presence of Coiled-Coil.%3B~High confidence in function and specificity;gbkey=CDS;gene=yceH;product=conserved hypothetical protein;protein_id=CAL93244.1;transl_table=11
AM406670.1	EMBL	gene	655581	657689	.	+	.	ID=gene633;Name=azo0628;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0628
AM406670.1	EMBL	CDS	655581	657689	.	+	0	ID=cds626;Parent=gene633;Dbxref=EnsemblGenomes-Gn:azo0628,EnsemblGenomes-Tr:CAL93245,GOA:A1K340,InterPro:IPR001054,InterPro:IPR007890,InterPro:IPR029787,UniProtKB/TrEMBL:A1K340,NCBI_GP:CAL93245.1;Name=CAL93245.1;Note=Putative adenylate/guanylate cyclase%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative adenylate/guanylate cyclase;protein_id=CAL93245.1;transl_table=11
AM406670.1	EMBL	gene	657725	658321	.	-	.	ID=gene634;Name=azo0629;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0629
AM406670.1	EMBL	CDS	657725	658321	.	-	0	ID=cds627;Parent=gene634;Dbxref=EnsemblGenomes-Gn:azo0629,EnsemblGenomes-Tr:CAL93246,GOA:A1K341,InterPro:IPR006664,InterPro:IPR006665,UniProtKB/TrEMBL:A1K341,NCBI_GP:CAL93246.1;Name=CAL93246.1;Note=Conserved hypothetical secreted protein. Homology to Daro03000403 of Dechloromonas aromatica of 37%25 (gi|46140621|ref|ZP_00152222.2|(NBCI ENTREZ)). InterPro: Bacterial outer membrane protein (IPR006664). Pfam: OmpA family. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93246.1;transl_table=11
AM406670.1	EMBL	gene	658318	658761	.	-	.	ID=gene635;Name=azo0630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0630
AM406670.1	EMBL	CDS	658318	658761	.	-	0	ID=cds628;Parent=gene635;Dbxref=EnsemblGenomes-Gn:azo0630,EnsemblGenomes-Tr:CAL93247,InterPro:IPR006860,UniProtKB/TrEMBL:A1K342,NCBI_GP:CAL93247.1;Name=CAL93247.1;Note=Conserved hypothetical secreted protein. Homology to PJS6w01004783 of Polaromonas sp. JS666 of 45%25 (gi|54028512|ref|ZP_00360661.1|(NBCI ENTREZ)). No domains predicted. signal peptide. TMH in signal peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93247.1;transl_table=11
AM406670.1	EMBL	gene	658869	661868	.	+	.	ID=gene636;Name=azo0631;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0631
AM406670.1	EMBL	CDS	658869	661868	.	+	0	ID=cds629;Parent=gene636;Dbxref=EnsemblGenomes-Gn:azo0631,EnsemblGenomes-Tr:CAL93248,InterPro:IPR003018,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR029016,InterPro:IPR029151,UniProtKB/TrEMBL:A1K343,NCBI_GP:CAL93248.1;Name=CAL93248.1;Note=HD-domain containing protein;gbkey=CDS;product=HD-domain containing protein;protein_id=CAL93248.1;transl_table=11
AM406670.1	EMBL	gene	661937	663787	.	+	.	ID=gene637;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=azo0632
AM406670.1	EMBL	CDS	661937	663787	.	+	0	ID=cds630;Parent=gene637;Dbxref=EnsemblGenomes-Gn:azo0632,EnsemblGenomes-Tr:CAL93249,GOA:A1K344,InterPro:IPR000581,InterPro:IPR004404,InterPro:IPR015928,InterPro:IPR020558,NCBI_GP:CAL93249.1;Name=CAL93249.1;Note=Dihydroxy-acid dehydratase catalyzes the fourth step in the biosynthesis of isoleucine and valine%2C the dehydratation of 2%2C3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. Similar to sprot|ILVD_PSEAE (74%25) and sprot|ILVD_ECOL6 (72%25). TIGRfam (TIGR00110): Dihydroxy-acid dehydratase Pfam (PF00920): Dihydroxy-acid and 6-phosphogluconate dehydratase%3B~High confidence in function and specificity;gbkey=CDS;gene=ilvD;product=dihydroxy-acid dehydratase;protein_id=CAL93249.1;transl_table=11
AM406670.1	EMBL	gene	663873	664067	.	+	.	ID=gene638;Name=azo0633;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0633
AM406670.1	EMBL	CDS	663873	664067	.	+	0	ID=cds631;Parent=gene638;Dbxref=EnsemblGenomes-Gn:azo0633,EnsemblGenomes-Tr:CAL93250,UniProtKB/TrEMBL:A1K345,NCBI_GP:CAL93250.1;Name=CAL93250.1;Note=Conserved hypothetical protein. Homology to Mflag03001107 of Methylobacillus flagellatus of 42%25 (gi|53759956|ref|ZP_00350342.1|(NBCI ENTREZ)). No Signal peptide or TMH present. No domains predicted.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93250.1;transl_table=11
AM406670.1	EMBL	gene	664076	664372	.	+	.	ID=gene639;Name=azo0634;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0634
AM406670.1	EMBL	CDS	664076	664372	.	+	0	ID=cds632;Parent=gene639;Dbxref=EnsemblGenomes-Gn:azo0634,EnsemblGenomes-Tr:CAL93251,GOA:A1K346,InterPro:IPR007838,UniProtKB/TrEMBL:A1K346,NCBI_GP:CAL93251.1;Name=CAL93251.1;Note=Conserved hypothetical protein. Homology to NE1890 of N.europaea of 35%25 (tremble:Q82TJ7) Has PF05164%2C Family of unknown function (DUF710)%3BIPR007838%3BFamily of eubacterial hypothetical proteins. No signal peptid. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93251.1;transl_table=11
AM406670.1	EMBL	gene	664722	665201	.	+	.	ID=gene640;Name=azo0635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0635
AM406670.1	EMBL	CDS	664722	665201	.	+	0	ID=cds633;Parent=gene640;Dbxref=EnsemblGenomes-Gn:azo0635,EnsemblGenomes-Tr:CAL93252,InterPro:IPR002740,InterPro:IPR015947,UniProtKB/TrEMBL:A1K347,NCBI_GP:CAL93252.1;Name=CAL93252.1;Note=Hypothetical protein%2C 72%25 identity(81%25 similarity) to TrEMBL%3BQ82TJ8. TrEMBL%3BQ8XWR7(62%25 identity). Has PF04543%2C Family of unknown function (DUF589)%3BIPR007628 %3BFamily of uncharacterised proteins%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93252.1;transl_table=11
AM406670.1	EMBL	gene	665191	665997	.	+	.	ID=gene641;Name=azo0636;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0636
AM406670.1	EMBL	CDS	665191	665997	.	+	0	ID=cds634;Parent=gene641;Dbxref=EnsemblGenomes-Gn:azo0636,EnsemblGenomes-Tr:CAL93253,GOA:A1K348,InterPro:IPR002781,UniProtKB/TrEMBL:A1K348,NCBI_GP:CAL93253.1;Name=CAL93253.1;Note=Conserved hypothetical membrane protein. TREMBL:Q82TJ9: 43%25 identity%2C 59%25 similarity InterPro:IPR002781%3B DUF81. Pfam:PF01925%3B DUF81 no signal peptide. 8 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93253.1;transl_table=11
AM406670.1	EMBL	gene	666063	666431	.	+	.	ID=gene642;Name=azo0637;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0637
AM406670.1	EMBL	CDS	666063	666431	.	+	0	ID=cds635;Parent=gene642;Dbxref=EnsemblGenomes-Gn:azo0637,EnsemblGenomes-Tr:CAL93254,UniProtKB/TrEMBL:A1K349,NCBI_GP:CAL93254.1;Name=CAL93254.1;Note=Hypothetical protein Extremely poor homology with hits in the DB. NO features/signal Peptide/Domains present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL93254.1;transl_table=11
AM406670.1	EMBL	gene	666529	667926	.	+	.	ID=gene643;Name=azo0638;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0638
AM406670.1	EMBL	CDS	666529	667926	.	+	0	ID=cds636;Parent=gene643;Dbxref=EnsemblGenomes-Gn:azo0638,EnsemblGenomes-Tr:CAL93255,GOA:A1K350,InterPro:IPR009051,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K350,NCBI_GP:CAL93255.1;Name=CAL93255.1;Note=Conserved hypothtecial protein. Homology to Avin02002811 of Azotobacter vinelandii of 50%25 (gi|23103464|ref|ZP_00089946.1|(NBCI ENTREZ)). InterPro: Domain of unknown function DUF224 (IPR004017). no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93255.1;transl_table=11
AM406670.1	EMBL	gene	668039	668347	.	+	.	ID=gene644;Name=azo0639;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0639
AM406670.1	EMBL	CDS	668039	668347	.	+	0	ID=cds637;Parent=gene644;Dbxref=EnsemblGenomes-Gn:azo0639,EnsemblGenomes-Tr:CAL93256,UniProtKB/TrEMBL:A1K351,NCBI_GP:CAL93256.1;Name=CAL93256.1;Note=Hypothetical protein. 22%25 identity to SwissProt%3BP45905 No domains%2C repeats%2C motifs or features present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL93256.1;transl_table=11
AM406670.1	EMBL	gene	668355	669284	.	-	.	ID=gene645;Name=mntC1;gbkey=Gene;gene=mntC1;gene_biotype=protein_coding;locus_tag=azo0640
AM406670.1	EMBL	CDS	668355	669284	.	-	0	ID=cds638;Parent=gene645;Dbxref=EnsemblGenomes-Gn:azo0640,EnsemblGenomes-Tr:CAL93257,GOA:A1K352,InterPro:IPR006127,InterPro:IPR006128,InterPro:IPR006129,UniProtKB/TrEMBL:A1K352,NCBI_GP:CAL93257.1;Name=CAL93257.1;Note=Part of the ABC transporter complex mntABC involved in manganese uptake. 41%25 Similar to the putative periplasmic-binding protein MntC precursor in E.coli. The MntC protein is also involved in the resistance to oxidative stress in N gonorrhoaeae. TREMBL E.coli:Q9F4F6. InterPro:IPR006128%3B Lipoprotein_4.IPR006127%3B SBP_bac_9. Pfam:PF01297%3B SBP_bac_9%3B 1. Signal peptide present.TMHelix:1 This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.%3B~High confidence in function and specificity;gbkey=CDS;gene=mntC1;product=putative manganese transport system%2C periplasmic-binding protein;protein_id=CAL93257.1;transl_table=11
AM406670.1	EMBL	gene	669287	670171	.	-	.	ID=gene646;Name=mntB1;gbkey=Gene;gene=mntB1;gene_biotype=protein_coding;locus_tag=azo0641
AM406670.1	EMBL	CDS	669287	670171	.	-	0	ID=cds639;Parent=gene646;Dbxref=EnsemblGenomes-Gn:azo0641,EnsemblGenomes-Tr:CAL93258,GOA:A1K353,InterPro:IPR001626,InterPro:IPR029022,UniProtKB/TrEMBL:A1K353,NCBI_GP:CAL93258.1;Name=CAL93258.1;Note=Part of the ABC transporter complex mntABC involved in manganese import. Probably responsible for the translocation of the substrate across the membrane. Similar to the permease protein%2C MntB in Synechocystis 6803. 30%25 IPR001626%3B ABC_transpt3. Pfam%3B PF00950%3B ABC-3%3B 1. This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.%3B~High confidence in function and specificity;gbkey=CDS;gene=mntB1;product=putative manganese transport system%2C permease protein;protein_id=CAL93258.1;transl_table=11
AM406670.1	EMBL	gene	670168	670938	.	-	.	ID=gene647;Name=mntA1;gbkey=Gene;gene=mntA1;gene_biotype=protein_coding;locus_tag=azo0642
AM406670.1	EMBL	CDS	670168	670938	.	-	0	ID=cds640;Parent=gene647;Dbxref=EnsemblGenomes-Gn:azo0642,EnsemblGenomes-Tr:CAL93259,GOA:A1K354,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K354,NCBI_GP:CAL93259.1;Name=CAL93259.1;Note=Manganese transport system ATP-binding protein mntA. This protein is probably a component of a manganese permease a binding protein-dependent ATP-driven transport system (mntABC). Probably responsible for energy coupling to the transport system. 36%25 AAA_ATPase.IPR003439%2CAAA ATPase superfamily%3B ABC_transporter. Pfam: PF00005%3B ABC_tran%3B 1. This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.%3B~High confidence in function and specificity;gbkey=CDS;gene=mntA1;product=putative manganese transport system%2C ATP-asa protein;protein_id=CAL93259.1;transl_table=11
AM406670.1	EMBL	gene	670947	671174	.	-	.	ID=gene648;Name=azo0643;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0643
AM406670.1	EMBL	CDS	670947	671174	.	-	0	ID=cds641;Parent=gene648;Dbxref=EnsemblGenomes-Gn:azo0643,EnsemblGenomes-Tr:CAL93260,UniProtKB/TrEMBL:A1K355,NCBI_GP:CAL93260.1;Name=CAL93260.1;Note=Conserved hypothetical membrane protein. Homology to ebA1811 of Azoarcus sp. EbN1 of 38%25 (gi|56476415|ref|YP_158004.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93260.1;transl_table=11
AM406670.1	EMBL	gene	671152	671676	.	-	.	ID=gene649;Name=azo0644;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0644
AM406670.1	EMBL	CDS	671152	671676	.	-	0	ID=cds642;Parent=gene649;Dbxref=EnsemblGenomes-Gn:azo0644,EnsemblGenomes-Tr:CAL93261,GOA:A1K356,InterPro:IPR002481,InterPro:IPR011991,UniProtKB/TrEMBL:A1K356,NCBI_GP:CAL93261.1;Name=CAL93261.1;Note=Putative regulator protein%2C probably involved in the regulation of cation uptake systems. 32%25 FUR.IPR009058%3B Wing_hlx_DNA_bnd. Pfam:PF01475%3B FUR%3B 1.Fur family protein 30%25%3B~Function unclear;gbkey=CDS;product=putative regulatory protein;protein_id=CAL93261.1;transl_table=11
AM406670.1	EMBL	gene	671714	672076	.	-	.	ID=gene650;Name=azo0645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0645
AM406670.1	EMBL	CDS	671714	672076	.	-	0	ID=cds643;Parent=gene650;Dbxref=EnsemblGenomes-Gn:azo0645,EnsemblGenomes-Tr:CAL93262,GOA:A1K357,InterPro:IPR009875,InterPro:IPR027021,UniProtKB/TrEMBL:A1K357,NCBI_GP:CAL93262.1;Name=CAL93262.1;Note=Conserved hypothetical protein. Homology to PSPTO4639 of P.syringae of 41%25 (tremble:Q87WB4) No domains predicted. No TMHs. No signal peptide;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93262.1;transl_table=11
AM406670.1	EMBL	gene	672312	674498	.	+	.	ID=gene651;Name=azo0646;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0646
AM406670.1	EMBL	CDS	672312	674498	.	+	0	ID=cds644;Parent=gene651;Dbxref=EnsemblGenomes-Gn:azo0646,EnsemblGenomes-Tr:CAL93263,GOA:A1K358,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005074,InterPro:IPR011527,InterPro:IPR017750,InterPro:IPR027417,UniProtKB/TrEMBL:A1K358,NCBI_GP:CAL93263.1;Name=CAL93263.1;Note=HlyB-family protein. Similar to TREMBL:Q7WBM7 (50%25 identity)%3B TREMBL:Q9KKL9 (41%25 identity)%3B SWISSPROT:P18770 (28%25 identity). Pfam (PF00005): ABC transporter. Pfam (PF00664): ABC transporter transmembrane region. TMHMM reporting four transmembrane helices. TC (3.A.1.109.3): LapA adhesin protein exporter%2C LapB.%3B~High confidence in function and specificity;gbkey=CDS;product=toxin secretion ABC transporter permease and ATP-binding protein;protein_id=CAL93263.1;transl_table=11
AM406670.1	EMBL	gene	674498	675913	.	+	.	ID=gene652;Name=hylD;gbkey=Gene;gene=hylD;gene_biotype=protein_coding;locus_tag=azo0647
AM406670.1	EMBL	CDS	674498	675913	.	+	0	ID=cds645;Parent=gene652;Dbxref=EnsemblGenomes-Gn:azo0647,EnsemblGenomes-Tr:CAL93264,GOA:A1K359,InterPro:IPR003997,InterPro:IPR006143,InterPro:IPR006144,InterPro:IPR010129,UniProtKB/TrEMBL:A1K359,NCBI_GP:CAL93264.1;Name=CAL93264.1;Note=Putative HylD family secretion protein. Homology to hylD of E. coli of 24%25 (sprot|HLY4_ECOLI) Involved in the transport of hemolysin A. InterPro: HlyD family secretion protein%3B Gram-negative bacteril RTX secretion protein D Pfam: HylD family secretion protein no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=hylD;product=putatice HlyD family secretion protein;protein_id=CAL93264.1;transl_table=11
AM406670.1	EMBL	gene	675910	676521	.	+	.	ID=gene653;Name=azo0648;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0648
AM406670.1	EMBL	CDS	675910	676521	.	+	0	ID=cds646;Parent=gene653;Dbxref=EnsemblGenomes-Gn:azo0648,EnsemblGenomes-Tr:CAL93265,GOA:A1K360,InterPro:IPR000792,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K360,NCBI_GP:CAL93265.1;Name=CAL93265.1;Note=Putative DNA-binding response regulator%2C LuxR family%2C%3B~Function unclear;gbkey=CDS;product=putative DNA-binding response regulator%2C LuxR family;protein_id=CAL93265.1;transl_table=11
AM406670.1	EMBL	gene	676646	679489	.	+	.	ID=gene654;Name=azo0649;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0649
AM406670.1	EMBL	CDS	676646	679489	.	+	0	ID=cds647;Parent=gene654;Dbxref=EnsemblGenomes-Gn:azo0649,EnsemblGenomes-Tr:CAL93266,UniProtKB/TrEMBL:A1K361,NCBI_GP:CAL93266.1;Name=CAL93266.1;Note=Conserved hypothetical protein. Homology to ebA1795 of Azoarcus sp. EbN1 of 46%25 (gnl|keqq|eba:ebA1795(KEGG)). No domains predicted. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93266.1;transl_table=11
AM406670.1	EMBL	gene	679569	680795	.	+	.	ID=gene655;Name=azo0650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0650
AM406670.1	EMBL	CDS	679569	680795	.	+	0	ID=cds648;Parent=gene655;Dbxref=EnsemblGenomes-Gn:azo0650,EnsemblGenomes-Tr:CAL93267,GOA:A1K362,InterPro:IPR001296,InterPro:IPR022623,UniProtKB/TrEMBL:A1K362,NCBI_GP:CAL93267.1;Name=CAL93267.1;Note=Conserved hypothetical glycosyltransferase. Homology to gsu0991 of G. sulfurreducens of 30%25 (tremblnew|AAR34318) Pfam: Glycosyl transferase group 1 no signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical glycosyltransferase;protein_id=CAL93267.1;transl_table=11
AM406670.1	EMBL	gene	680822	681160	.	+	.	ID=gene656;Name=azo0651;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0651
AM406670.1	EMBL	CDS	680822	681160	.	+	0	ID=cds649;Parent=gene656;Dbxref=EnsemblGenomes-Gn:azo0651,EnsemblGenomes-Tr:CAL93268,UniProtKB/TrEMBL:A1K363,NCBI_GP:CAL93268.1;Name=CAL93268.1;Note=Conserved hypothetical protein. Homology to ebB52 Azoarcus sp. EbN1 of 40%25 (gnl|keqq|eba:ebB52(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93268.1;transl_table=11
AM406670.1	EMBL	gene	681161	683074	.	-	.	ID=gene657;Name=azo0652;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0652
AM406670.1	EMBL	CDS	681161	683074	.	-	0	ID=cds650;Parent=gene657;Dbxref=EnsemblGenomes-Gn:azo0652,EnsemblGenomes-Tr:CAL93269,GOA:A1K364,InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR003660,InterPro:IPR029787,UniProtKB/TrEMBL:A1K364,NCBI_GP:CAL93269.1;Name=CAL93269.1;Note=Conserved hypothetical GGDF domain protein. Homology to CV0310 of Chromobacterium violaceum of 34%25 (trembl|Q7P1A3). Has IPR003660_HAMP%2CSMART%3BSM00304:This domain is known as the HAMP domain for histidine kinases%2Cadenylyl cyclases%2C methyl binding proteins and phosphatases. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. Has IPR000160_GGDEF(SMART%3BSM00267)%3BThis domain is found linked to a wide range of non-homologous domains in a variety of bacteria. The function of this domain is unknown%2C however it has been shown to be homologous to the adenylyl cyclase catalytic domain. This prediction correlates with the functional information available on two GGDEF-containing proteins%2C namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum%2C both of which regulate the turnover of cyclic diguanosine monophosphate. Has DUF2: This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with PAS IPR000014 and DUF9 IPR000160 domains that are also found in many signalling proteins. signal peptide 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical GGDEF domain protein;protein_id=CAL93269.1;transl_table=11
AM406670.1	EMBL	gene	683109	683831	.	-	.	ID=gene658;Name=azo0653;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0653
AM406670.1	EMBL	CDS	683109	683831	.	-	0	ID=cds651;Parent=gene658;Dbxref=EnsemblGenomes-Gn:azo0653,EnsemblGenomes-Tr:CAL93270,InterPro:IPR010319,UniProtKB/TrEMBL:A1K365,NCBI_GP:CAL93270.1;Name=CAL93270.1;Note=Conserved hypothetical secreted protein. Homology to BB1185 of Bordetella bronchiseptica of 49%25 (trembl|Q7WN55(SRS)) Signal peptide present. No TMHs Has PF06035%2C Bacterial protein of unknown function (DUF920)%3BIPR010319%3B This family consists of several hypothetical bacterial proteins of unknown function.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93270.1;transl_table=11
AM406670.1	EMBL	gene	684035	685477	.	+	.	ID=gene659;Name=aggA;gbkey=Gene;gene=aggA;gene_biotype=protein_coding;locus_tag=azo0654
AM406670.1	EMBL	CDS	684035	685477	.	+	0	ID=cds652;Parent=gene659;Dbxref=EnsemblGenomes-Gn:azo0654,EnsemblGenomes-Tr:CAL93271,GOA:A1K366,InterPro:IPR003423,InterPro:IPR010130,UniProtKB/TrEMBL:A1K366,NCBI_GP:CAL93271.1;Name=CAL93271.1;Note=Putative outer membrane efflux protein. Homology to aggA from P. putida of 35%25. The OEP family (outer membrane efflux protein) allow export of a variety of substrates in Gram negative bacteria. InterPro: Outer membrane efflux protein Pfam: Outer membrane efflux protein signal peptide no TMHs%3B~Function unclear;gbkey=CDS;gene=aggA;product=putative outer membrane efflux protein;protein_id=CAL93271.1;transl_table=11
AM406670.1	EMBL	gene	685558	689061	.	+	.	ID=gene660;Name=azo0655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0655
AM406670.1	EMBL	CDS	685558	689061	.	+	0	ID=cds653;Parent=gene660;Dbxref=EnsemblGenomes-Gn:azo0655,EnsemblGenomes-Tr:CAL93272,GOA:A1K367,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR011006,UniProtKB/TrEMBL:A1K367,NCBI_GP:CAL93272.1;Name=CAL93272.1;Note=Putative two-component sensor histidine kinase protein. TrEMBL%3B Q87XU6( 47%25 identity%2C 64%25 similarity)%2CQ6F9J5(43%25 identity%2C61%25 similarity)%2CQ6NAD6(44%25 Identity%2C61%25 similarity). TMHMM2 reporting 2 TMH's present. No Signal peptide Present. Has PF02133%3BPermease for cytosine/purines%2C uracil%2C thiamine%2C allantoin: IPR001248%3BCyt_pur_permease:The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism. Has PF07578:Lipid A Biosynthesis N-terminal domain%3BThis family is found at the N-terminus of a group of Chlamydial Lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function. Has SMART%3BSM00388:(IPR003661)Dimerisation and phosphoacceptor domain of histidine kinases.The histidine kinase A (phosphoacceptor) N-terminal domain is a dimerisation and phosphoacceptor domain of histidine kinases. It has been found in bacterial sensor protein/histidine kinases. IPR003594%3BATPbind_ATPase%3B(SM00387)This domain is found in several ATP-binding proteins for example: histidine kinase%2C DNA gyrase B%2C topoisomerases%2C heat shock protein HSP90%2C phytochrome-like ATPases and DNA mismatch repair proteins. SM00448%3BIPR001789%3BResponse_reg:This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.%3B~High confidence in function and specificity;gbkey=CDS;product=putative two-component sensor histidine kinase protein;protein_id=CAL93272.1;transl_table=11
AM406670.1	EMBL	gene	689058	690014	.	+	.	ID=gene661;Name=azo0656;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0656
AM406670.1	EMBL	CDS	689058	690014	.	+	0	ID=cds654;Parent=gene661;Dbxref=EnsemblGenomes-Gn:azo0656,EnsemblGenomes-Tr:CAL93273,GOA:A1K368,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K368,NCBI_GP:CAL93273.1;Name=CAL93273.1;Note=Putative transcriptional regulator%2C LuxR family%2CResponse_reg. IPR000792%3B HTH_LuxR. Pfam: PF00072%3B response_reg. PF00196%3B GerE. SMART: SM00448%3B REC. SM00421%3B HTH_LUXR. HTH reporting reporting nucleic acid binding motif.%3B~Family membership;gbkey=CDS;product=putative transcriptional regulator%2C LuxR family;protein_id=CAL93273.1;transl_table=11
AM406670.1	EMBL	gene	691405	692367	.	+	.	ID=gene662;Name=azo0657;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0657
AM406670.1	EMBL	CDS	691405	692367	.	+	0	ID=cds655;Parent=gene662;Dbxref=EnsemblGenomes-Gn:azo0657,EnsemblGenomes-Tr:CAL93274,InterPro:IPR018677,UniProtKB/TrEMBL:A1K369,NCBI_GP:CAL93274.1;Name=CAL93274.1;Note=Conserved hypothetical membrane protein. Homology to Raeut03005995 of Ralstonia eutropha of 34%25 (gi|53760601|ref|ZP_00350538.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. 10 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93274.1;transl_table=11
AM406670.1	EMBL	gene	692364	693995	.	+	.	ID=gene663;Name=azo0658;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0658
AM406670.1	EMBL	CDS	692364	693995	.	+	0	ID=cds656;Parent=gene663;Dbxref=EnsemblGenomes-Gn:azo0658,EnsemblGenomes-Tr:CAL93275,InterPro:IPR025513,InterPro:IPR025833,UniProtKB/TrEMBL:A1K370,NCBI_GP:CAL93275.1;Name=CAL93275.1;Note=Hypothetical membrane protein. No homology of the entire protein to the data bank. No domains predicted. No signal peptide. 12 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93275.1;transl_table=11
AM406670.1	EMBL	gene	694005	695342	.	-	.	ID=gene664;Name=gor;gbkey=Gene;gene=gor;gene_biotype=protein_coding;locus_tag=azo0659
AM406670.1	EMBL	CDS	694005	695342	.	-	0	ID=cds657;Parent=gene664;Dbxref=EnsemblGenomes-Gn:azo0659,EnsemblGenomes-Tr:CAL93276,GOA:A1K371,InterPro:IPR001327,InterPro:IPR004099,InterPro:IPR006322,InterPro:IPR012999,InterPro:IPR013027,InterPro:IPR016156,InterPro:IPR023753,UniProtKB/TrEMBL:A1K371,NCBI_GP:CAL93276.1;Name=CAL93276.1;Note=Probable glutathione-disulfide reductase. Homology to gor of E. coli of 53%25 (sprot|GSHR_ECOLI). Maintain high levels of reduced glutathione in the cytosol. InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327)%3B NAD binding site (IPR000205)%3B Pyridine nuclotide-disulfide oxidoreductase dimerisation doamin (IPR004099)%3B Pyridine nucleotide-disulphide oxidoreductase%2C class I (IPR001100) Pfam: Pyridine nuccleotide-dusulfphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase dimerisation domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=gor;product=probable glutathione-disulfide reductase;protein_id=CAL93276.1;transl_table=11
AM406670.1	EMBL	gene	695491	697395	.	+	.	ID=gene665;Name=azo0660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0660
AM406670.1	EMBL	CDS	695491	697395	.	+	0	ID=cds658;Parent=gene665;Dbxref=EnsemblGenomes-Gn:azo0660,EnsemblGenomes-Tr:CAL93277,GOA:A1K372,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K372,NCBI_GP:CAL93277.1;Name=CAL93277.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Similar to TREMBL:Q87G83 (52%25 identity)%3B TREMBL:Q9K1A3 (61%25 identity)%3B SWISSPROT:Q57180 (60%25 identity). Pfam (PF00005): ABC transporter. TMHMM reporting five transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease and ATP-binding protein;protein_id=CAL93277.1;transl_table=11
AM406670.1	EMBL	gene	697403	697951	.	+	.	ID=gene666;Name=azo0661;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0661
AM406670.1	EMBL	CDS	697403	697951	.	+	0	ID=cds659;Parent=gene666;Dbxref=EnsemblGenomes-Gn:azo0661,EnsemblGenomes-Tr:CAL93278,InterPro:IPR002725,UniProtKB/TrEMBL:A1K373,NCBI_GP:CAL93278.1;Name=CAL93278.1;Note=Hypothetical protein ygjP. TREMBL:Q83JJ6: 60%25 identity%2C74%25 similarity (probable metal dependent hydrolase) Members of this family are found in some archaebacteria%2C as well as Helicobacter pylori. The proteins are 190-240 amino acids long%2C with the C terminus being the most conserved region%2C containing three conserved histidines InterPro:IPR002725%3B DUF45. Pfam:PF01863%3B DUF45 Non secretory protein with probability of signal peptide being 0.243 No transmembrane helices gmhA: phosphoheptose isomerase%3B~High confidence in function and specificity;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93278.1;transl_table=11
AM406670.1	EMBL	gene	697992	698543	.	-	.	ID=gene667;Name=azo0662;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0662
AM406670.1	EMBL	CDS	697992	698543	.	-	0	ID=cds660;Parent=gene667;Dbxref=EnsemblGenomes-Gn:azo0662,EnsemblGenomes-Tr:CAL93279,InterPro:IPR009642,UniProtKB/TrEMBL:A1K374,NCBI_GP:CAL93279.1;Name=CAL93279.1;Note=conserved hypothetical secreted protein. Homology to bA4595 of Azoarcus sp. EbN1 of 52%25 (gnl|keqq|eba:ebA4595(KEGG)) . No domains predicted. No TMHs. Signal Peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93279.1;transl_table=11
AM406670.1	EMBL	gene	698767	699378	.	+	.	ID=gene668;Name=azo0663;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0663
AM406670.1	EMBL	CDS	698767	699378	.	+	0	ID=cds661;Parent=gene668;Dbxref=EnsemblGenomes-Gn:azo0663,EnsemblGenomes-Tr:CAL93280,GOA:A1K375,InterPro:IPR000462,UniProtKB/TrEMBL:A1K375,NCBI_GP:CAL93280.1;Name=CAL93280.1;Note=Catalysis of the reaction: CDP + alcohol %3D CMP + phosphatidyl alcohol. Entry name Q8PQ18 Primary accession number: Q8PQ18 InterPro IPR000462%3B CDP-OH_P_trans. Pfam PF01066%3B CDP-OH_P_transf%3B 1. Identities %3D 114/203 (56%25)%2CPrediction: Signal peptide Signal peptide probability: 0.988 Number of predicted TMHs: 3%3B~Family membership;gbkey=CDS;product=probable CDP-alcohol phosphatidyltransferase family protein.;protein_id=CAL93280.1;transl_table=11
AM406670.1	EMBL	gene	699386	701152	.	+	.	ID=gene669;Name=azo0664;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0664
AM406670.1	EMBL	CDS	699386	701152	.	+	0	ID=cds662;Parent=gene669;Dbxref=EnsemblGenomes-Gn:azo0664,EnsemblGenomes-Tr:CAL93281,InterPro:IPR022742,InterPro:IPR022744,InterPro:IPR029058,InterPro:IPR029063,UniProtKB/TrEMBL:A1K376,NCBI_GP:CAL93281.1;Name=CAL93281.1;Note=Similar to TREMBL:Q87TY0 (64%25 identity)%3B TREMBL:Q8PQ17 (61%25 identity)%3B SWISSPROT:P76092 (55%25 identity).;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93281.1;transl_table=11
AM406670.1	EMBL	gene	701149	702507	.	+	.	ID=gene670;Name=azo0665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0665
AM406670.1	EMBL	CDS	701149	702507	.	+	0	ID=cds663;Parent=gene670;Dbxref=EnsemblGenomes-Gn:azo0665,EnsemblGenomes-Tr:CAL93282,GOA:A1K377,InterPro:IPR000326,InterPro:IPR000340,InterPro:IPR000387,InterPro:IPR029021,UniProtKB/TrEMBL:A1K377,NCBI_GP:CAL93282.1;Name=CAL93282.1;Note=Entry name:- Q9I0U5 Primary accession number:-Q9I0U5 InterPro:- IPR008934%3B AcPase_VanPerase. IPR000340%3B DS_phosphatase. IPR000326%3B PA_PTPase. Number of predicted TMHs: 8 Prediction: Non-secretory protein Signal peptide probability: 0.061 IPR000387%3B TYR_phosphatase. Pfam PF00782%3B DSPc%3B 1. PF01569%3B PAP2%3B 1. Identity:- 58%25;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93282.1;transl_table=11
AM406670.1	EMBL	gene	702500	702943	.	+	.	ID=gene671;Name=azo0666;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0666
AM406670.1	EMBL	CDS	702500	702943	.	+	0	ID=cds664;Parent=gene671;Dbxref=EnsemblGenomes-Gn:azo0666,EnsemblGenomes-Tr:CAL93283,UniProtKB/TrEMBL:A1K378,NCBI_GP:CAL93283.1;Name=CAL93283.1;Note=Conserved hypothetical membrane protein. Homology to PA2538 of Pseudomonas aeruginosa of 36%25 (trembl|Q9I0U6). No domains predicted. No signal peptide. 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93283.1;transl_table=11
AM406670.1	EMBL	gene	702973	703596	.	+	.	ID=gene672;Name=azo0667;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0667
AM406670.1	EMBL	CDS	702973	703596	.	+	0	ID=cds665;Parent=gene672;Dbxref=EnsemblGenomes-Gn:azo0667,EnsemblGenomes-Tr:CAL93284,GOA:A1K379,InterPro:IPR002123,UniProtKB/TrEMBL:A1K379,NCBI_GP:CAL93284.1;Name=CAL93284.1;Note=FUNCTION: Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating an acyl moiety at the 2 position. This enzyme can utilize either acyl-CoA or acyl-acyl carrier protein as the fatty acyl donor. CATALYTIC ACTIVITY: Acyl-CoA + 1-acyl-sn-glycerol 3-phosphate %3D CoA + 1%2C2-diacyl-sn-glycerol 3-phosphate. Entry name:-SWISSPROT:PLSC_ECOLI Prim. accession # P26647 InterPro:-IPR002123%3B Acyltransferase. IPR004552%3B AGP_acyltrn. Pfam:-PF01553%3B Acyltransferase%3B 1. Identities %3D 42/127 (33%25) Prediction: Non-secretory protein Signal peptide probability: 0.014 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;product=putative acyltransferase;protein_id=CAL93284.1;transl_table=11
AM406670.1	EMBL	gene	703602	704546	.	+	.	ID=gene673;Name=azo0668;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0668
AM406670.1	EMBL	CDS	703602	704546	.	+	0	ID=cds666;Parent=gene673;Dbxref=EnsemblGenomes-Gn:azo0668,EnsemblGenomes-Tr:CAL93285,GOA:A1K380,InterPro:IPR000374,UniProtKB/TrEMBL:A1K380,NCBI_GP:CAL93285.1;Name=CAL93285.1;Note=Conserved hypothetical phoshpatidate cytidyltransferase. Homology to pa2536 of P. aeruginosa (trembl|Q9I0U8). Phosphatidate cytidylyltransferase is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate %3D diphosphate + CDP-diacylglycerol Pfam: Phospatidate cytidyltransferase signal peptide 7 TMHs InterPro: Phosphatidate cytidylyltransferase stp: serine transporter%3B~Family membership;gbkey=CDS;product=conserved hypothetical phosphatidate cytidylyltransferase;protein_id=CAL93285.1;transl_table=11
AM406670.1	EMBL	gene	704566	705237	.	-	.	ID=gene674;Name=napC1;gbkey=Gene;gene=napC1;gene_biotype=protein_coding;locus_tag=azo0669
AM406670.1	EMBL	CDS	704566	705237	.	-	0	ID=cds667;Parent=gene674;Dbxref=EnsemblGenomes-Gn:azo0669,EnsemblGenomes-Tr:CAL93286,GOA:A1K381,InterPro:IPR005126,InterPro:IPR011031,InterPro:IPR011885,InterPro:IPR024717,UniProtKB/TrEMBL:A1K381,NCBI_GP:CAL93286.1;Name=CAL93286.1;Note=Probable cytochrome c-type protein NapC. Homology to napC of r. sphaeroides of 67%25 (sprot|NAPC_RHOSH). MEDIATES ELECTRON FLOW FROM QUINONES TO THE NAPAB COMPLEX. signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=napC1;product=probable cytochrome C-type protein NapC;protein_id=CAL93286.1;transl_table=11
AM406670.1	EMBL	gene	705250	705717	.	-	.	ID=gene675;Name=napB1;gbkey=Gene;gene=napB1;gene_biotype=protein_coding;locus_tag=azo0670
AM406670.1	EMBL	CDS	705250	705717	.	-	0	ID=cds668;Parent=gene675;Dbxref=EnsemblGenomes-Gn:azo0670,EnsemblGenomes-Tr:CAL93287,GOA:A1K382,InterPro:IPR005591,InterPro:IPR027406,UniProtKB/TrEMBL:A1K382,NCBI_GP:CAL93287.1;Name=CAL93287.1;Note=probable diheme cytochrome c. Homology to napB of A. eutrophus of 51%25 (sprot|NAPB_ALCEU). SMALL SUBUNIT OF THE PERIPLASMIC NITRATE REDUCTASE (NAP). ONLY EXPRESSED AT HIGH LEVELS DURING AEROBIC GROWTH. NAPAB COMPLEX RECEIVES ELECTRONS FROM THE MEMBRANE-ANCHORED TETRAHEME NAPC PROTEIN THUS ALLOWING ELECTRON FLOW BETWEEN MEMBRANE AND PERIPLASM. ESSENTIAL FUNCTION FOR NITRATE ASSIMILATION AND MAY HAVE A ROLE IN ANAEROBIC METABOLISM. signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=napB1;product=probable diheme cytochrome C;protein_id=CAL93287.1;transl_table=11
AM406670.1	EMBL	gene	705728	708220	.	-	.	ID=gene676;Name=napA1;gbkey=Gene;gene=napA1;gene_biotype=protein_coding;locus_tag=azo0671
AM406670.1	EMBL	CDS	705728	708220	.	-	0	ID=cds669;Parent=gene676;Dbxref=EnsemblGenomes-Gn:azo0671,EnsemblGenomes-Tr:CAL93288,GOA:A1K383,InterPro:IPR006311,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,InterPro:IPR010051,InterPro:IPR027467,UniProtKB/TrEMBL:A1K383,NCBI_GP:CAL93288.1;Name=CAL93288.1;Note=Nitrate reductase large subunit. Homology to napA of a. eutrophus of 76%25 (sprot|NAPA_ALCEU). ONLY EXPRESSED AT HIGH LEVELS DURING AEROBIC GROWTH. NAPAB COMPLEX RECEIVES ELECTRONS FROM THE MEMBRANE-ANCHORED TETRAHEME NAPC PROTEIN THUS ALLOWING ELECTRON FLOW BETWEEN MEMBRANE AND PERIPLASM. ESSENTIAL FUNCTION FOR NITRATE ASSIMILATION AND MAY HAVE A ROLE IN ANAEROBIC METABOLISM. InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655) Pfam: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=napA1;product=nitrate reductase;protein_id=CAL93288.1;transl_table=11
AM406670.1	EMBL	gene	708192	708494	.	-	.	ID=gene677;Name=napD1;gbkey=Gene;gene=napD1;gene_biotype=protein_coding;locus_tag=azo0672
AM406670.1	EMBL	CDS	708192	708494	.	-	0	ID=cds670;Parent=gene677;Dbxref=EnsemblGenomes-Gn:azo0672,EnsemblGenomes-Tr:CAL93289,InterPro:IPR005623,UniProtKB/TrEMBL:A1K384,NCBI_GP:CAL93289.1;Name=CAL93289.1;Note=Putative NapD protein%2C component of of periplasmic nitrate reductase system. Plays a role in the correct assembly of subunits of the periplasmic napAB enzyme. Homology to napD of Rhodobacter sphaeroides of 26%25 (gi|3345484|dbj|AB016290.1|). InterPro:IPR005623%3B NapD. Pfam:PF03927%3B NapD%3B 1. no signal peptide. No TMHs.%3B~Function unclear;gbkey=CDS;gene=napD1;product=putative NapD protein;protein_id=CAL93289.1;transl_table=11
AM406670.1	EMBL	gene	708506	708664	.	-	.	ID=gene678;Name=napE;gbkey=Gene;gene=napE;gene_biotype=protein_coding;locus_tag=azo0673
AM406670.1	EMBL	CDS	708506	708664	.	-	0	ID=cds671;Parent=gene678;Dbxref=EnsemblGenomes-Gn:azo0673,EnsemblGenomes-Tr:CAL93290,InterPro:IPR004448,InterPro:IPR010649,UniProtKB/TrEMBL:A1K385,NCBI_GP:CAL93290.1;Name=CAL93290.1;Note=Putative periplasmic nitrate reductase accessory protein NapE. Homology to napE of R. sphaeroides of 36%25 (trembl|O88159). Pfam: Periplasmic nitrate reductase protein NapE (PF06796) This family consists of several bacterial periplasmic nitrate reductase NapE proteins. NapE is thought to be a transmembrane protein of the reductase. Interpro: Periplasmic nitrate reductase protein NapE (IPR010649) no signal peptide 1 TMH%3B~Family membership;gbkey=CDS;gene=napE;product=putative periplasmic nitrate reductase accessory protein NapE;protein_id=CAL93290.1;transl_table=11
AM406670.1	EMBL	gene	709010	710266	.	+	.	ID=gene679;Name=amiC2;gbkey=Gene;gene=amiC2;gene_biotype=protein_coding;locus_tag=azo0674
AM406670.1	EMBL	CDS	709010	710266	.	+	0	ID=cds672;Parent=gene679;Dbxref=EnsemblGenomes-Gn:azo0674,EnsemblGenomes-Tr:CAL93291,GOA:A1K386,InterPro:IPR000709,InterPro:IPR006311,InterPro:IPR017777,InterPro:IPR028082,UniProtKB/TrEMBL:A1K386,NCBI_GP:CAL93291.1;Name=CAL93291.1;Note=AmiC regulates the expression of the inducible aliphatic amidase activity in Pseudomonas aeruginosa. Similar to trembl|Q87VQ0 (80%25) and to sprot|AMIC_PSEAE (27%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=amiC2;product=putative aliphatic amidase expression-regulating protein;protein_id=CAL93291.1;transl_table=11
AM406670.1	EMBL	gene	710535	712166	.	+	.	ID=gene680;Name=azo0675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0675
AM406670.1	EMBL	CDS	710535	712166	.	+	0	ID=cds673;Parent=gene680;Dbxref=EnsemblGenomes-Gn:azo0675,EnsemblGenomes-Tr:CAL93292,GOA:A1K387,InterPro:IPR001851,InterPro:IPR017779,UniProtKB/TrEMBL:A1K387,NCBI_GP:CAL93292.1;Name=CAL93292.1;Note=Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q87VP9 (50%25)and to pir|AB0146 (48%25). Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) TMHMM reporting nine Tmhelix. SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease protein;protein_id=CAL93292.1;transl_table=11
AM406670.1	EMBL	gene	712360	713553	.	+	.	ID=gene681;Name=urtC;gbkey=Gene;gene=urtC;gene_biotype=protein_coding;locus_tag=azo0676
AM406670.1	EMBL	CDS	712360	713553	.	+	0	ID=cds674;Parent=gene681;Dbxref=EnsemblGenomes-Gn:azo0676,EnsemblGenomes-Tr:CAL93293,GOA:A1K388,InterPro:IPR001851,InterPro:IPR017778,UniProtKB/TrEMBL:A1K388,NCBI_GP:CAL93293.1;Name=CAL93293.1;Note=Probable ABC transporter%2C membrane spanning protein. Homology to urtC of Anabaena sp. of 41%25 (involved in urea transport). Part of the binding-protein-dependent transport system. Probably responsible for the translocation of the substrates across the membrane. InterPro: Binding-system dependent bacterial transporters (araH livH/limM families) Pfam: Branched-chain amino acid transport system signal peptide probable 9 TMHs%3B~Function unclear;gbkey=CDS;gene=urtC;product=probable ABC transporter%2C membrane spanning protein;protein_id=CAL93293.1;transl_table=11
AM406670.1	EMBL	gene	713550	714407	.	+	.	ID=gene682;Name=urtD;gbkey=Gene;gene=urtD;gene_biotype=protein_coding;locus_tag=azo0677
AM406670.1	EMBL	CDS	713550	714407	.	+	0	ID=cds675;Parent=gene682;Dbxref=EnsemblGenomes-Gn:azo0677,EnsemblGenomes-Tr:CAL93294,GOA:A1K389,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017781,InterPro:IPR027417,UniProtKB/TrEMBL:A1K389,NCBI_GP:CAL93294.1;Name=CAL93294.1;Note=Conserved hypothetical ABC transporter%2C ATP binding protein. Homology to pp4844 of P. putida of 70%25 (trembl|Q88DI1). Probable component of a branched-chain amino-acid transport system. Pfam: ABC-Transporter no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=urtD;product=conserved hypothetical ABC transporter%2C ATP binding protein;protein_id=CAL93294.1;transl_table=11
AM406670.1	EMBL	gene	714834	715526	.	+	.	ID=gene683;Name=urtE;gbkey=Gene;gene=urtE;gene_biotype=protein_coding;locus_tag=azo0678
AM406670.1	EMBL	CDS	714834	715526	.	+	0	ID=cds676;Parent=gene683;Dbxref=EnsemblGenomes-Gn:azo0678,EnsemblGenomes-Tr:CAL93295,GOA:A1K390,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017780,InterPro:IPR027417,UniProtKB/TrEMBL:A1K390,NCBI_GP:CAL93295.1;Name=CAL93295.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q88DI0 (59%25) and to sprot|BRAG_PSEAE (35%25). Pfam: ABC transporter Smart: AAA ATPases%3B~Specificity unclear;gbkey=CDS;gene=urtE;product=ABC transporter ATP-binding protein;protein_id=CAL93295.1;transl_table=11
AM406670.1	EMBL	gene	715560	716513	.	+	.	ID=gene684;Name=nodD;gbkey=Gene;gene=nodD;gene_biotype=protein_coding;locus_tag=azo0679
AM406670.1	EMBL	CDS	715560	716513	.	+	0	ID=cds677;Parent=gene684;Dbxref=EnsemblGenomes-Gn:azo0679,EnsemblGenomes-Tr:CAL93296,GOA:A1K391,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K391,NCBI_GP:CAL93296.1;Name=CAL93296.1;Note=Probable nodulation protein%2C%3B~Function unclear;gbkey=CDS;gene=nodD;product=probable nodulation protein;protein_id=CAL93296.1;transl_table=11
AM406670.1	EMBL	gene	716527	717309	.	-	.	ID=gene685;Name=caiD;gbkey=Gene;gene=caiD;gene_biotype=protein_coding;locus_tag=azo0680
AM406670.1	EMBL	CDS	716527	717309	.	-	0	ID=cds678;Parent=gene685;Dbxref=EnsemblGenomes-Gn:azo0680,EnsemblGenomes-Tr:CAL93297,GOA:A1K392,InterPro:IPR001753,InterPro:IPR029045,UniProtKB/TrEMBL:A1K392,NCBI_GP:CAL93297.1;Name=CAL93297.1;Note=Function: Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotobetainyl-CoA. Entry name CAID_ECO57 Primary accession number Q8XA35 InterPro IPR001753%3B EnCoA_hydrtse. Pfam PF00378%3B ECH%3B 1. Identities %3D 30%25 Prediction: Non-secretory protein Signal peptide probability: 0.003 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=caiD;product=putative Carnitinyl-CoA dehydratase;protein_id=CAL93297.1;transl_table=11
AM406670.1	EMBL	gene	717556	717876	.	+	.	ID=gene686;Name=azo0681;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0681
AM406670.1	EMBL	CDS	717556	717876	.	+	0	ID=cds679;Parent=gene686;Dbxref=EnsemblGenomes-Gn:azo0681,EnsemblGenomes-Tr:CAL93298,InterPro:IPR007436,UniProtKB/TrEMBL:A1K393,NCBI_GP:CAL93298.1;Name=CAL93298.1;Note=Conserved hypothetical membrane protein. Homology to PP2796 of P. putida of 44%25 (trembl|Q88J53) PF04341%2CProtein of unknown function%2C DUF485%3BIPR007436%3BThis family includes several putative integral membrane proteins. signal peptide 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93298.1;transl_table=11
AM406670.1	EMBL	gene	717876	719555	.	+	.	ID=gene687;Name=azo0682;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0682
AM406670.1	EMBL	CDS	717876	719555	.	+	0	ID=cds680;Parent=gene687;Dbxref=EnsemblGenomes-Gn:azo0682,EnsemblGenomes-Tr:CAL93299,GOA:A1K394,InterPro:IPR001734,InterPro:IPR018212,InterPro:IPR019900,UniProtKB/TrEMBL:A1K394,NCBI_GP:CAL93299.1;Name=CAL93299.1;Note=conserved hypothetical sodium:solute symporter: Homology to an orf of P. aeruginosa of 72%25 (trembl|Q9APX1). Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force%2C SMF) is used to drive solute accumulation against a concentration gradient. The solutes transported may be sugars%2C amino acids%2C nucleosides%2C inositols%2C vitamins%2Curea or anions%2C depending on the system. InterPro: Sodium:solute symporter family (IPR001734) Tigrfam: sss: SSS sodium solute transporter superfamily Pfam: Sodim:solute symporter family signal peptide 13 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical sodium:solute symporter;protein_id=CAL93299.1;transl_table=11
AM406670.1	EMBL	gene	719709	721004	.	+	.	ID=gene688;Name=ytfL1;gbkey=Gene;gene=ytfL1;gene_biotype=protein_coding;locus_tag=azo0683
AM406670.1	EMBL	CDS	719709	721004	.	+	0	ID=cds681;Parent=gene688;Dbxref=EnsemblGenomes-Gn:azo0683,EnsemblGenomes-Tr:CAL93300,GOA:A1K395,InterPro:IPR000644,InterPro:IPR002550,InterPro:IPR005170,InterPro:IPR016166,InterPro:IPR016169,UniProtKB/TrEMBL:A1K395,NCBI_GP:CAL93300.1;Name=CAL93300.1;Note=Hypothetical protein ytfL. TREMBL:Q7NQ98: 61%25 identity%2C 78%25 similarity InterPro IPR002550%3B CBS. IPR000644%3B CBS_domain. IPR005170%3B CorC_transpt-asc. Pfam: PF00571%3B CBS%3B 2. PF03471%3B CorC_HlyC%3B PF01595%3B DUF21%3B gntP: gluconate transporter Signal peptide present (Signal P predicted) Transmembrane helices 4 (TMHMM predicted)%3B~High confidence in function and specificity;gbkey=CDS;gene=ytfL1;product=probable hemolysin;protein_id=CAL93300.1;transl_table=11
AM406670.1	EMBL	gene	721389	722060	.	-	.	ID=gene689;Name=mdcY;gbkey=Gene;gene=mdcY;gene_biotype=protein_coding;locus_tag=azo0684
AM406670.1	EMBL	CDS	721389	722060	.	-	0	ID=cds682;Parent=gene689;Dbxref=EnsemblGenomes-Gn:azo0684,EnsemblGenomes-Tr:CAL93301,GOA:A1K396,InterPro:IPR000524,InterPro:IPR008920,InterPro:IPR011711,InterPro:IPR011991,UniProtKB/TrEMBL:A1K396,NCBI_GP:CAL93301.1;Name=CAL93301.1;Note=Transcriptional regulator%2C GntR-family%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=mdcY;product=transcriptional regulator%2C GntR-family;protein_id=CAL93301.1;transl_table=11
AM406670.1	EMBL	gene	722387	724552	.	+	.	ID=gene690;Name=mutB;gbkey=Gene;gene=mutB;gene_biotype=protein_coding;locus_tag=azo0685
AM406670.1	EMBL	CDS	722387	724552	.	+	0	ID=cds683;Parent=gene690;Dbxref=EnsemblGenomes-Gn:azo0685,EnsemblGenomes-Tr:CAL93302,GOA:A1K397,InterPro:IPR006098,InterPro:IPR006099,InterPro:IPR006158,InterPro:IPR006159,InterPro:IPR014348,InterPro:IPR016176,UniProtKB/TrEMBL:A1K397,NCBI_GP:CAL93302.1;Name=CAL93302.1;Note=FUNCTION: Catalyzes the isomerization of succinyl-CoA to methylmalonyl-CoA during synthesis of propionate from tricarboxylic acid-cycle intermediates (By similarity). ACtivity:- (R)-2-Methylmalonyl-CoA %3D succinyl-CoA Entry name :- MUTB_PORGI Primary accession number :-Q59677 Identities %3D 467/679 (68%25) InterPro :-IPR006159%3B Acid_CoA_mut_C. IPR006158%3B B12-binding. IPR006099%3B MMCoA_mutase. IPR006098%3B MMCoA_mutase_N. IPR006100%3B MMCoA_mutase_sub. Pfam PF02310%3B B12-binding%3B 1. PF01642%3B MM_CoA_mutase%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=mutB;product=probable Methylmalonyl-CoA mutase large subunit;protein_id=CAL93302.1;transl_table=11
AM406670.1	EMBL	gene	724619	725632	.	+	.	ID=gene691;Name=argK;gbkey=Gene;gene=argK;gene_biotype=protein_coding;locus_tag=azo0686
AM406670.1	EMBL	CDS	724619	725632	.	+	0	ID=cds684;Parent=gene691;Dbxref=EnsemblGenomes-Gn:azo0686,EnsemblGenomes-Tr:CAL93303,GOA:A1K398,InterPro:IPR005129,InterPro:IPR027417,UniProtKB/TrEMBL:A1K398,NCBI_GP:CAL93303.1;Name=CAL93303.1;Note=Putative LAO/AO transport system kinase. Homology to argK of E. coli (sprot|ARGK_ECOLI). In Escherichia coli K-12%2C the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase%2C ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase. no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=argK;product=putative LAO/AO transport system kinase;protein_id=CAL93303.1;transl_table=11
AM406670.1	EMBL	gene	725698	727233	.	+	.	ID=gene692;Name=pccB;gbkey=Gene;gene=pccB;gene_biotype=protein_coding;locus_tag=azo0687
AM406670.1	EMBL	CDS	725698	727233	.	+	0	ID=cds685;Parent=gene692;Dbxref=EnsemblGenomes-Gn:azo0687,EnsemblGenomes-Tr:CAL93304,GOA:A1K399,InterPro:IPR000022,InterPro:IPR011762,InterPro:IPR011763,InterPro:IPR029045,UniProtKB/TrEMBL:A1K399,NCBI_GP:CAL93304.1;Name=CAL93304.1;Note=Activity:- ATP + propanoyl-CoA + HCO3- %3D ADP + phosphate + (S)-methylmalonyl-CoA Entry name:-TREMBL:Q8U9Y9 Prim. accession # Q8U9Y9 InterPro:-IPR000438%3B ACoACC_transB. IPR000022%3B Carboxyl_trans. Pfam:- PF01039%3B Carboxyl_trans%3B 1. Identities %3D 363/511 (71%25) Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=pccB;product=probable propionyl-coa carboxylase beta subunit.;protein_id=CAL93304.1;transl_table=11
AM406670.1	EMBL	gene	727372	729378	.	+	.	ID=gene693;Name=pccA;gbkey=Gene;gene=pccA;gene_biotype=protein_coding;locus_tag=azo0688
AM406670.1	EMBL	CDS	727372	729378	.	+	0	ID=cds686;Parent=gene693;Dbxref=EnsemblGenomes-Gn:azo0688,EnsemblGenomes-Tr:CAL93305,GOA:A1K3A0,InterPro:IPR000089,InterPro:IPR001882,InterPro:IPR004549,InterPro:IPR005479,InterPro:IPR005481,InterPro:IPR005482,InterPro:IPR011053,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR011764,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,UniProtKB/TrEMBL:A1K3A0,NCBI_GP:CAL93305.1;Name=CAL93305.1;Note=Activity:- ATP + propanoyl-CoA + HCO3- %3D ADP + phosphate + (S)-methylmalonyl-CoA Entry name :- Q8U9Z4 Primary accession number:- Q8U9Z4 InterPro:- IPR001882%3B Biotin_BS. IPR005482%3B Biotin_carb_C. IPR000089%3B Biotin_lipoyl. IPR005481%3B CPase_L_N. IPR005479%3B Cphp_synth_L_D2. Pfam:- PF02785%3B Biotin_carb_C%3B 1. PF00364%3B Biotin_lipoyl%3B 1. PF00289%3B CPSase_L_chain%3B 1. PF02786%3B CPSase_L_D2%3B 1. Identities %3D 400/673 (59%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=pccA;product=probable propionyl-CoA carboxylase alpha chain;protein_id=CAL93305.1;transl_table=11
AM406670.1	EMBL	gene	729561	732017	.	+	.	ID=gene694;Name=azo0689;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0689
AM406670.1	EMBL	CDS	729561	732017	.	+	0	ID=cds687;Parent=gene694;Dbxref=EnsemblGenomes-Gn:azo0689,EnsemblGenomes-Tr:CAL93306,GOA:A1K3A1,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR013655,InterPro:IPR013656,InterPro:IPR029787,UniProtKB/TrEMBL:A1K3A1,NCBI_GP:CAL93306.1;Name=CAL93306.1;Note=GGEF/EAL/PAS/PAC-domain containing protein%2C sym%3B pNGR234a) / TREMBL: trembl|Q7NYX4 (40%25 Chromobacterium violaceum%2C cv1148) InterPro: IPR000160 GGDEF. IPR000014 PAS. IPR000700 PAS-assoc_C. IPR001633 EAL. Pfam: PF00990 GGDEF domain. PF00989 PAS domain. PF00785 PAC motif. PF00563 EAL domain. TIGRFAM:TIGR00229 PAS domain S-box. TIGR00254 putative diguanylate cyclase (GGDEF) domain.;gbkey=CDS;product=GGEF/EAL/PAS/PAC-domain containing protein;protein_id=CAL93306.1;transl_table=11
AM406670.1	EMBL	gene	732026	733909	.	+	.	ID=gene695;Name=azo0690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0690
AM406670.1	EMBL	CDS	732026	733909	.	+	0	ID=cds688;Parent=gene695;Dbxref=EnsemblGenomes-Gn:azo0690,EnsemblGenomes-Tr:CAL93307,InterPro:IPR000160,InterPro:IPR011622,InterPro:IPR011623,InterPro:IPR029787,UniProtKB/TrEMBL:A1K3A2,NCBI_GP:CAL93307.1;Name=CAL93307.1;Note=Conserved hypothetical protein. Homology to PA4929 of P.aeruginosa of 32%25 (trembl|Q9HUN5(SRS)). Signal P reporting presence of signal peptide. 7 TMHs Has PF07696: 7TMR-DISM extracellular 2%3B This entry represents one of two distinct types of extracellular domain found in the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) bacterial transmembrane proteins. It is possible that this domain adopts a jelly roll fold and acts as a receptor for carbohydrates and their derivatives. Has PF07695:7TM diverse intracellular signalling domain%3BThis entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules). Has IPR000160%3BGGDEF:(SM00267)This domain is found linked to a wide range of non-homologous domains. The function of this domain is unknown This domain is found in proteins which contain bacterial signaling domains. Has PF07696:7TMR-DISM extracellular 2 domain%3BThis entry represents one of two distinct types of extracellular domain found in the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) bacterial transmembrane proteins. It is possible that this domain adopts a jelly roll fold and acts as a receptor for carbohydrates and their derivatives.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93307.1;transl_table=11
AM406670.1	EMBL	gene	734005	734865	.	+	.	ID=gene696;Name=azo0691;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0691
AM406670.1	EMBL	CDS	734005	734865	.	+	0	ID=cds689;Parent=gene696;Dbxref=EnsemblGenomes-Gn:azo0691,EnsemblGenomes-Tr:CAL93308,GOA:A1K3A3,InterPro:IPR007343,UniProtKB/TrEMBL:A1K3A3,NCBI_GP:CAL93308.1;Name=CAL93308.1;Note=Conserved hypothetical metallopeptidase. Homology to bpp2257 of B. parapertussis of 63%25 (trembl|Q7W887). Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases%2C however there is no evidence to support their function as metallopeptidases. Pfam: putaive neutral zinc metallopeptidase no signal peptide 1 TMH%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical metallopeptidase;protein_id=CAL93308.1;transl_table=11
AM406670.1	EMBL	gene	734887	735363	.	-	.	ID=gene697;Name=gloA1;gbkey=Gene;gene=gloA1;gene_biotype=protein_coding;locus_tag=azo0692
AM406670.1	EMBL	CDS	734887	735363	.	-	0	ID=cds690;Parent=gene697;Dbxref=EnsemblGenomes-Gn:azo0692,EnsemblGenomes-Tr:CAL93309,GOA:A1K3A4,InterPro:IPR029068,UniProtKB/TrEMBL:A1K3A4,NCBI_GP:CAL93309.1;Name=CAL93309.1;Note=Glyoxalase I (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway in the following reaction: glutathione + methylglyoxal %3D (R)-S-lactoylglutathione%2C%3B~Function unclear;gbkey=CDS;gene=gloA1;product=probable lactoylglutathione lyase;protein_id=CAL93309.1;transl_table=11
AM406670.1	EMBL	gene	735949	736680	.	-	.	ID=gene698;Name=virG;gbkey=Gene;gene=virG;gene_biotype=protein_coding;locus_tag=azo0693
AM406670.1	EMBL	CDS	735949	736680	.	-	0	ID=cds691;Parent=gene698;Dbxref=EnsemblGenomes-Gn:azo0693,EnsemblGenomes-Tr:CAL93310,GOA:A1K3A5,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K3A5,NCBI_GP:CAL93310.1;Name=CAL93310.1;Note=Probable DNA-binding response regulator%2CResponse_reg. IPR001867%3B Trans_reg_C. Pfam: PF00072%3B response_reg. PF00486%3B trans_reg_C. SMART: SM00448%3B REC.%3B~Specificity unclear;gbkey=CDS;gene=virG;product=probable DNA-binding response regulator;protein_id=CAL93310.1;transl_table=11
AM406670.1	EMBL	gene	736677	738734	.	-	.	ID=gene699;Name=azo0694;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0694
AM406670.1	EMBL	CDS	736677	738734	.	-	0	ID=cds692;Parent=gene699;Dbxref=EnsemblGenomes-Gn:azo0694,EnsemblGenomes-Tr:CAL93311,GOA:A1K3A6,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR013656,UniProtKB/TrEMBL:A1K3A6,NCBI_GP:CAL93311.1;Name=CAL93311.1;Note=Putative hybrid sensor and regulator protein%2C%3B~Specificity unclear;gbkey=CDS;product=putative hybrid sensor and regulator protein;protein_id=CAL93311.1;transl_table=11
AM406670.1	EMBL	gene	738888	739898	.	-	.	ID=gene700;Name=oruR1;gbkey=Gene;gene=oruR1;gene_biotype=protein_coding;locus_tag=azo0695
AM406670.1	EMBL	CDS	738888	739898	.	-	0	ID=cds693;Parent=gene700;Dbxref=EnsemblGenomes-Gn:azo0695,EnsemblGenomes-Tr:CAL93312,GOA:A1K3A7,InterPro:IPR009057,InterPro:IPR018060,UniProtKB/TrEMBL:A1K3A7,NCBI_GP:CAL93312.1;Name=CAL93312.1;Note=Putative ornithine utilization regulator%2C%3B~Specificity unclear;gbkey=CDS;gene=oruR1;product=putative ornithine utilization regulator;protein_id=CAL93312.1;transl_table=11
AM406670.1	EMBL	gene	740204	743470	.	+	.	ID=gene701;Name=azo0696;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0696
AM406670.1	EMBL	CDS	740204	743470	.	+	0	ID=cds694;Parent=gene701;Dbxref=EnsemblGenomes-Gn:azo0696,EnsemblGenomes-Tr:CAL93313,GOA:A1K3A8,InterPro:IPR005129,InterPro:IPR006098,InterPro:IPR006099,InterPro:IPR006158,InterPro:IPR014348,InterPro:IPR016176,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3A8,NCBI_GP:CAL93313.1;Name=CAL93313.1;Note=Methylmalonyl-CoA mutase mitochondrial precursor (EC 5.4.99.2) (MCM). INVOLVED IN MAN IN THE DEGRADATION OF SEVERAL AMINO ACIDS ODD-CHAIN FATTY ACIDS AND CHOLESTEROL VIA PROPIONYL-COA TO THE TRICARBOXYLIC ACID CYCLE. MCM HAS DIFFERENT FUNCTIONS IN OTHER SPECIES. Activity:-(R)-2-Methylmalonyl-CoA %3D succinyl-CoA Entry name :-TREMBL:Q8Y2U5 Prim. accession # Q8Y2U5 Identities %3D 797/1103 (72%25) InterPro:- IPR006159%3B Acid_CoA_mut_C. IPR005129%3B ArgK. IPR006158%3B B12-binding. IPR006099%3B MMCoA_mutase. IPR006098%3B MMCoA_mutase_N. Pfam:- PF03308%3B ArgK%3B 1. PF02310%3B B12-binding%3B 1. PF01642%3B MM_CoA_mutase%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.005 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;product=probable methylmalonyl-coa mutase protein;protein_id=CAL93313.1;transl_table=11
AM406670.1	EMBL	gene	743567	743848	.	-	.	ID=gene702;Name=azo0697;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0697
AM406670.1	EMBL	CDS	743567	743848	.	-	0	ID=cds695;Parent=gene702;Dbxref=EnsemblGenomes-Gn:azo0697,EnsemblGenomes-Tr:CAL93314,UniProtKB/TrEMBL:A1K3A9,NCBI_GP:CAL93314.1;Name=CAL93314.1;Note=Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93314.1;transl_table=11
AM406670.1	EMBL	gene	743845	745224	.	-	.	ID=gene703;Name=fumC;gbkey=Gene;gene=fumC;gene_biotype=protein_coding;locus_tag=azo0698
AM406670.1	EMBL	CDS	743845	745224	.	-	0	ID=cds696;Parent=gene703;Dbxref=EnsemblGenomes-Gn:azo0698,EnsemblGenomes-Tr:CAL93315,GOA:A1K3B0,InterPro:IPR000362,InterPro:IPR005677,InterPro:IPR008948,InterPro:IPR018951,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,UniProtKB/TrEMBL:A1K3B0,NCBI_GP:CAL93315.1;Name=CAL93315.1;Note=Fumarate hydratase. Homology to fumCo f P. aerunigosa of 76%25 (sprot|FMC1_PSEAE). Catalyzes the reversible hydration of fumarate to L-malate. Tigrfam: aspA: aspartate ammonia-lyase Pfam: Lyase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fumC;product=fumarate hydratase;protein_id=CAL93315.1;transl_table=11
AM406670.1	EMBL	gene	745304	746044	.	-	.	ID=gene704;Name=azo0699;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0699
AM406670.1	EMBL	CDS	745304	746044	.	-	0	ID=cds697;Parent=gene704;Dbxref=EnsemblGenomes-Gn:azo0699,EnsemblGenomes-Tr:CAL93316,InterPro:IPR013424,UniProtKB/TrEMBL:A1K3B1,NCBI_GP:CAL93316.1;Name=CAL93316.1;Note=Hypothetical secreted protein. No significant homology to the data bank. no domains pedicted. signal peptide. TMH in signal peptide;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93316.1;transl_table=11
AM406670.1	EMBL	gene	746188	747486	.	-	.	ID=gene705;Name=azo0700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0700
AM406670.1	EMBL	CDS	746188	747486	.	-	0	ID=cds698;Parent=gene705;Dbxref=EnsemblGenomes-Gn:azo0700,EnsemblGenomes-Tr:CAL93317,GOA:A1K3B2,InterPro:IPR005532,InterPro:IPR016187,InterPro:IPR017806,InterPro:IPR024775,UniProtKB/TrEMBL:A1K3B2,NCBI_GP:CAL93317.1;Name=CAL93317.1;Note=Hypothetical protein%2C 52%25 identity to TrEMBL%3BQ8XYG9. Has PF03781%2C Domain of unknown function (DUF323)%3BIPR005532 %3BThis presumed domain is found in bacterial proteins. In some cases these proteins also contain a protein kinase domain. The function of this domain is unknown. The domain has also been found in a eukaryotic protein%2C required for post-translational sulphatase modification.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93317.1;transl_table=11
AM406670.1	EMBL	gene	747598	748953	.	-	.	ID=gene706;Name=nagZ1;gbkey=Gene;gene=nagZ1;gene_biotype=protein_coding;locus_tag=azo0701
AM406670.1	EMBL	CDS	747598	748953	.	-	0	ID=cds699;Parent=gene706;Dbxref=EnsemblGenomes-Gn:azo0701,EnsemblGenomes-Tr:CAL93318,GOA:A1K3B3,InterPro:IPR001764,InterPro:IPR017853,UniProtKB/TrEMBL:A1K3B3,NCBI_GP:CAL93318.1;Name=CAL93318.1;Note=(N-acetyl-beta-glucosaminidase)(Beta-N-acetylhexosaminidase). Cleaves GlcNAc linked beta-1%2C4 to MurNAc tripeptides (By similarity). Hydrolyzes rapidly p-nitrophenyl-N-acetyl-beta-D-glucosaminide (PNP-beta-GlcNAc) and 4-methylumbelliferyl-beta-GlcNAc%2C and slightly active on p-nitrophenyl-beta-GalNAc. May play a role in signal transduction between host and organism. 34%25 Glyco_hydro_3N. Pfam:PF00933%3B Glyco_hydro_3%3B 1. TMhelix:2.%3B~High confidence in function and specificity;gbkey=CDS;gene=nagZ1;product=putative beta-hexosaminidase;protein_id=CAL93318.1;transl_table=11
AM406670.1	EMBL	gene	748950	750281	.	-	.	ID=gene707;Name=creD;gbkey=Gene;gene=creD;gene_biotype=protein_coding;locus_tag=azo0702
AM406670.1	EMBL	CDS	748950	750281	.	-	0	ID=cds700;Parent=gene707;Dbxref=EnsemblGenomes-Gn:azo0702,EnsemblGenomes-Tr:CAL93319,InterPro:IPR010364,UniProtKB/TrEMBL:A1K3B4,NCBI_GP:CAL93319.1;Name=CAL93319.1;Note=CreD confers tolerance to colicin E2. Similar to SWISSPROT:P08369 (35%25 identity). TMHMM reporting six transmembrane helices.%3B~High confidence in function and specificity;gbkey=CDS;gene=creD;product=inner membrane protein CreD;protein_id=CAL93319.1;transl_table=11
AM406670.1	EMBL	gene	750394	751824	.	-	.	ID=gene708;Name=creC;gbkey=Gene;gene=creC;gene_biotype=protein_coding;locus_tag=azo0703
AM406670.1	EMBL	CDS	750394	751824	.	-	0	ID=cds701;Parent=gene708;Dbxref=EnsemblGenomes-Gn:azo0703,EnsemblGenomes-Tr:CAL93320,GOA:A1K3B5,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR029151,UniProtKB/TrEMBL:A1K3B5,NCBI_GP:CAL93320.1;Name=CAL93320.1;Note=Sensor protein creC%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=creC;product=catabolite repression sensor kinase for PhoB;protein_id=CAL93320.1;transl_table=11
AM406670.1	EMBL	gene	751848	752555	.	-	.	ID=gene709;Name=creB;gbkey=Gene;gene=creB;gene_biotype=protein_coding;locus_tag=azo0704
AM406670.1	EMBL	CDS	751848	752555	.	-	0	ID=cds702;Parent=gene709;Dbxref=EnsemblGenomes-Gn:azo0704,EnsemblGenomes-Tr:CAL93321,GOA:A1K3B6,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K3B6,NCBI_GP:CAL93321.1;Name=CAL93321.1;Note=transcriptional regulatory protein creB%2CResponse_reg. IPR001867%3B Trans_reg_C. Pfam:PF00072%3B response_reg. PF00486%3B trans_reg_C. SMART:SM00448%3B REC. Transcriptional regulatory protein creB. MEMBER OF THE TWO-COMPONENT REGULATORY SYSTEM CREC/CREB INVOLVED IN CATABOLIC REGULATION.%3B~High confidence in function and specificity;gbkey=CDS;gene=creB;product=two-component system regulatory protein;protein_id=CAL93321.1;transl_table=11
AM406670.1	EMBL	gene	752570	754012	.	-	.	ID=gene710;Name=mgtE;gbkey=Gene;gene=mgtE;gene_biotype=protein_coding;locus_tag=azo0705
AM406670.1	EMBL	CDS	752570	754012	.	-	0	ID=cds703;Parent=gene710;Dbxref=EnsemblGenomes-Gn:azo0705,EnsemblGenomes-Tr:CAL93322,GOA:A1K3B7,InterPro:IPR000644,InterPro:IPR006667,InterPro:IPR006668,InterPro:IPR006669,UniProtKB/TrEMBL:A1K3B7,NCBI_GP:CAL93322.1;Name=CAL93322.1;Note=Probable magnesium transporter%2C MgtE. Members of this family probably transport Mg2+ or other divalent cations into the cell. 26%25 CBS_domain.IPR006667%3B MgtE_integrmembr. Pfam:PF00571%3B CBS%3B 2.PF01769%3B MgtE%3B 1. TMHleix: 3.%3B~Function unclear;gbkey=CDS;gene=mgtE;product=putative magnesium transport protein;protein_id=CAL93322.1;transl_table=11
AM406670.1	EMBL	gene	754167	754862	.	-	.	ID=gene711;Name=mtgA;gbkey=Gene;gene=mtgA;gene_biotype=protein_coding;locus_tag=azo0706
AM406670.1	EMBL	CDS	754167	754862	.	-	0	ID=cds704;Parent=gene711;Dbxref=EnsemblGenomes-Gn:azo0706,EnsemblGenomes-Tr:CAL93323,GOA:A1K3B8,InterPro:IPR001264,InterPro:IPR011812,InterPro:IPR023346,NCBI_GP:CAL93323.1;Name=CAL93323.1;Note=Probable monofunctional biosynthetic peptidoglycan transglycosylase. Homology to mtgA of N. gonorrhoeae of 43%25 (sprot|MTGA_NEIGO) Cell wall formation (By similarity). The transglycosylase domain catalyses the polymerisation of murein glycan chains. Pfam: Transglycosylase signal peptide no TMHs%3B~Function unclear;gbkey=CDS;gene=mtgA;product=probable monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=CAL93323.1;transl_table=11
AM406670.1	EMBL	gene	754859	755704	.	-	.	ID=gene712;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=azo0707
AM406670.1	EMBL	CDS	754859	755704	.	-	0	ID=cds705;Parent=gene712;Dbxref=EnsemblGenomes-Gn:azo0707,EnsemblGenomes-Tr:CAL93324,GOA:A1K3B9,InterPro:IPR006151,InterPro:IPR011342,InterPro:IPR013708,InterPro:IPR016040,InterPro:IPR022893,NCBI_GP:CAL93324.1;Name=CAL93324.1;Note=Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Similar to sprot|AROE_ECOL6 (51%25)%2C to trembl|Q7W3V3 (45%25) and to sprot|AROE_PSEAE (43%25). TIGRFAM: aroE%2C shikimate 5-dehydrogenase Pfam: Shikimate / quinate 5-dehydrogenase%3B~High confidence in function and specificity;gbkey=CDS;gene=aroE;product=AroE protein;protein_id=CAL93324.1;transl_table=11
AM406670.1	EMBL	gene	755718	756620	.	-	.	ID=gene713;Name=azo0708;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0708
AM406670.1	EMBL	CDS	755718	756620	.	-	0	ID=cds706;Parent=gene713;Dbxref=EnsemblGenomes-Gn:azo0708,EnsemblGenomes-Tr:CAL93325,GOA:A1K3C0,InterPro:IPR006260,UniProtKB/TrEMBL:A1K3C0,NCBI_GP:CAL93325.1;Name=CAL93325.1;Note=Conserved hypothetical secreted protein. Homology to ne1626 of N. europaea of 46%25 (trembl|Q82U75) no domains predicted signal peptide TMH in signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93325.1;transl_table=11
AM406670.1	EMBL	gene	756666	758567	.	-	.	ID=gene714;Name=azo0709;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0709
AM406670.1	EMBL	CDS	756666	758567	.	-	0	ID=cds707;Parent=gene714;Dbxref=EnsemblGenomes-Gn:azo0709,EnsemblGenomes-Tr:CAL93326,InterPro:IPR012340,UniProtKB/TrEMBL:A1K3C1,NCBI_GP:CAL93326.1;Name=CAL93326.1;Note=Putative exoribonuclease II (EC: 3.1.13.1)%2C RNase R / VacB protein) / TREMBL: trembl|Q7P1X0 (50%25 Chromobacterium violaceum%2C probable ribonuclease ll%2Ccv0092) InterPro: IPR001900 Ribonuclease_II. Pfam: PF00773 RNB-like protein.%3B~Conserved hypothetical protein;gbkey=CDS;product=putative exoribonuclease II;protein_id=CAL93326.1;transl_table=11
AM406670.1	EMBL	gene	758634	759479	.	-	.	ID=gene715;Name=azo0710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0710
AM406670.1	EMBL	CDS	758634	759479	.	-	0	ID=cds708;Parent=gene715;Dbxref=EnsemblGenomes-Gn:azo0710,EnsemblGenomes-Tr:CAL93327,GOA:A1K3C2,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:A1K3C2,NCBI_GP:CAL93327.1;Name=CAL93327.1;Note=Similar to TREMBL:Q8KNG7 (29%25 identity)%3B TREMBL:Q8UEX8 (27%25 identity). Pfam (PF01209): ubiE/COQ5 methyltransferase family.%3B~Function unclear;gbkey=CDS;product=putative methyltransferase;protein_id=CAL93327.1;transl_table=11
AM406670.1	EMBL	gene	759510	760103	.	-	.	ID=gene716;Name=azo0711;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0711
AM406670.1	EMBL	CDS	759510	760103	.	-	0	ID=cds709;Parent=gene716;Dbxref=EnsemblGenomes-Gn:azo0711,EnsemblGenomes-Tr:CAL93328,InterPro:IPR008886,InterPro:IPR029058,UniProtKB/TrEMBL:A1K3C3,NCBI_GP:CAL93328.1;Name=CAL93328.1;Note=Conserrved hypothetical protein. Homology to rsc2781 of R. solanacearum of 51%25 (trembl|Q8XVP9) Pfam: UPF0227 Despite being classed as uncharacterised proteins%2Cthe members of this family are almost certainly enzymes that are distantly related to the Abhydrolase_1. no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93328.1;transl_table=11
AM406670.1	EMBL	gene	760137	760961	.	-	.	ID=gene717;Name=uppP;gbkey=Gene;gene=uppP;gene_biotype=protein_coding;locus_tag=azo0712
AM406670.1	EMBL	CDS	760137	760961	.	-	0	ID=cds710;Parent=gene717;Dbxref=EnsemblGenomes-Gn:azo0712,EnsemblGenomes-Tr:CAL93329,GOA:A1K3C4,InterPro:IPR003824,NCBI_GP:CAL93329.1;Name=CAL93329.1;Note=Bacitracin resistance protein%2C may confer resistance to bacitracin by phosphorylation of undecaprenol%2C SWISSPROT:Q88IY7 (47%25 identity)%3B TREMBL:Q82Y49. InterPro (IPR003824): Bacitracin resistance protein BacA. Pfam (PF02673): Bacitracin resistance protein BacA. TIGRFAM (TIGR00753): Undecaprenol kinase%2Cputative. TMHMM reporting seven transmembrane helices.%3B~High confidence in function and specificity;gbkey=CDS;gene=uppP;product=undecaprenol kinase;protein_id=CAL93329.1;transl_table=11
AM406670.1	EMBL	gene	761053	761304	.	-	.	ID=gene718;Name=azo0713;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0713
AM406670.1	EMBL	CDS	761053	761304	.	-	0	ID=cds711;Parent=gene718;Dbxref=EnsemblGenomes-Gn:azo0713,EnsemblGenomes-Tr:CAL93330,UniProtKB/TrEMBL:A1K3C5,NCBI_GP:CAL93330.1;Name=CAL93330.1;Note=Hypothetical protein PA1578.1. TREMBL:Q7W9P0:69%25 identity%2C 78%25 similarity TREMBL: Q8PDJ2: 69%25 identity%2C 74%25 similarity (predicted proteinase inhibitor)) Probable Fe-S cluster bearing oxidoreductase function. InterPro:IPR005358%3B UPF0153. Pfam:PF03692%3B UPF0153%3B~High confidence in function and specificity;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93330.1;transl_table=11
AM406670.1	EMBL	gene	761309	761842	.	-	.	ID=gene719;Name=azo0714;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0714
AM406670.1	EMBL	CDS	761309	761842	.	-	0	ID=cds712;Parent=gene719;Dbxref=EnsemblGenomes-Gn:azo0714,EnsemblGenomes-Tr:CAL93331,InterPro:IPR018912,UniProtKB/TrEMBL:A1K3C6,NCBI_GP:CAL93331.1;Name=CAL93331.1;Note=Conserved hypothetical protein. Homology to RPA1001 of R.palustris of 37%25 (tremble:Q6NB29). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93331.1;transl_table=11
AM406670.1	EMBL	gene	761844	762548	.	-	.	ID=gene720;Name=azo0715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0715
AM406670.1	EMBL	CDS	761844	762548	.	-	0	ID=cds713;Parent=gene720;Dbxref=EnsemblGenomes-Gn:azo0715,EnsemblGenomes-Tr:CAL93332,InterPro:IPR029063,UniProtKB/TrEMBL:A1K3C7,NCBI_GP:CAL93332.1;Name=CAL93332.1;Note=Conserved hypothetical protein. Homology to DP0001 of Desulfotalea psychrophila of 43%25 (gnl|keqq|dps:DP0001(KEGG)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93332.1;transl_table=11
AM406670.1	EMBL	gene	762691	766773	.	+	.	ID=gene721;Name=hrpA;gbkey=Gene;gene=hrpA;gene_biotype=protein_coding;locus_tag=azo0716
AM406670.1	EMBL	CDS	762691	766773	.	+	0	ID=cds714;Parent=gene721;Dbxref=EnsemblGenomes-Gn:azo0716,EnsemblGenomes-Tr:CAL93333,GOA:A1K3C8,InterPro:IPR001650,InterPro:IPR003593,InterPro:IPR007502,InterPro:IPR010222,InterPro:IPR011709,InterPro:IPR014001,InterPro:IPR024590,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3C8,NCBI_GP:CAL93333.1;Name=CAL93333.1;Note=ATP-dependent helicase hrpA. Not yet known. InterPro: DEAD/DEAH box helicase%3B~High confidence in function and specificity;gbkey=CDS;gene=hrpA;product=putative ATP-dependent helicase;protein_id=CAL93333.1;transl_table=11
AM406670.1	EMBL	gene	766798	767121	.	-	.	ID=gene722;Name=azo0717;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0717
AM406670.1	EMBL	CDS	766798	767121	.	-	0	ID=cds715;Parent=gene722;Dbxref=EnsemblGenomes-Gn:azo0717,EnsemblGenomes-Tr:CAL93334,UniProtKB/TrEMBL:A1K3C9,NCBI_GP:CAL93334.1;Name=CAL93334.1;Note=Conserved hypothetical secreted protein. Homology to ebA3912 of Azoarcus sp. EbN1 of 45%25 (gi|56477657|ref|YP_159246.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93334.1;transl_table=11
AM406670.1	EMBL	gene	767369	767752	.	+	.	ID=gene723;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=azo0718
AM406670.1	EMBL	CDS	767369	767752	.	+	0	ID=cds716;Parent=gene723;Dbxref=EnsemblGenomes-Gn:azo0718,EnsemblGenomes-Tr:CAL93335,GOA:A1K3D0,InterPro:IPR000529,InterPro:IPR014717,InterPro:IPR020814,NCBI_GP:CAL93335.1;Name=CAL93335.1;Note=30S ribosomal protein S6. Binds together with S18 to 16S ribosomal RNA%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsF;product=RpsF protein;protein_id=CAL93335.1;transl_table=11
AM406670.1	EMBL	gene	767768	768079	.	+	.	ID=gene724;Name=priB;gbkey=Gene;gene=priB;gene_biotype=protein_coding;locus_tag=azo0719
AM406670.1	EMBL	CDS	767768	768079	.	+	0	ID=cds717;Parent=gene724;Dbxref=EnsemblGenomes-Gn:azo0719,EnsemblGenomes-Tr:CAL93336,GOA:A1K3D1,InterPro:IPR000424,InterPro:IPR012340,InterPro:IPR023646,UniProtKB/TrEMBL:A1K3D1,NCBI_GP:CAL93336.1;Name=CAL93336.1;Note=Putative primosomal replication protein N Homology to priB of E. coli of 31%25 (sprot|PRIB_ECOLI) Component of the preprimosomal complex composed of priA%2C priB%2C priC%2CdnaB and dnaT. Upon transient interaction with dnaG it forms the primosome. Binds single-stranded DNA. Pfam: Single-stranded binding protein family (PF00436) Interpro: Single stranded binding (IPR010913) no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=priB;product=putative primosomal replication proteinN;protein_id=CAL93336.1;transl_table=11
AM406670.1	EMBL	gene	768081	768356	.	+	.	ID=gene725;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=azo0720
AM406670.1	EMBL	CDS	768081	768356	.	+	0	ID=cds718;Parent=gene725;Dbxref=EnsemblGenomes-Gn:azo0720,EnsemblGenomes-Tr:CAL93337,GOA:A1K3D2,InterPro:IPR001648,InterPro:IPR018275,UniProtKB/TrEMBL:A1K3D2,NCBI_GP:CAL93337.1;Name=CAL93337.1;Note=30S ribosomal protein S18. Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA where it helps stabilize the platform of the 30S subunit (By similarity). InterPro: Ribosomal protein S18 S18: ribosomal protein S18%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsR;product=30S ribosomal protein S18;protein_id=CAL93337.1;transl_table=11
AM406670.1	EMBL	gene	768375	768830	.	+	.	ID=gene726;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=azo0721
AM406670.1	EMBL	CDS	768375	768830	.	+	0	ID=cds719;Parent=gene726;Dbxref=EnsemblGenomes-Gn:azo0721,EnsemblGenomes-Tr:CAL93338,GOA:A1K3D3,InterPro:IPR000244,InterPro:IPR009027,InterPro:IPR020069,InterPro:IPR020070,InterPro:IPR020594,NCBI_GP:CAL93338.1;Name=CAL93338.1;Note=50S ribosomal protein L9. Binds to the 23S rRNA%3B~High confidence in function and specificity;gbkey=CDS;gene=rplI;product=50S ribosomal protein L9;protein_id=CAL93338.1;transl_table=11
AM406670.1	EMBL	gene	768968	770377	.	+	.	ID=gene727;Name=dnaB;gbkey=Gene;gene=dnaB;gene_biotype=protein_coding;locus_tag=azo0722
AM406670.1	EMBL	CDS	768968	770377	.	+	0	ID=cds720;Parent=gene727;Dbxref=EnsemblGenomes-Gn:azo0722,EnsemblGenomes-Tr:CAL93339,GOA:A1K3D4,InterPro:IPR003593,InterPro:IPR007692,InterPro:IPR007693,InterPro:IPR007694,InterPro:IPR016136,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3D4,NCBI_GP:CAL93339.1;Name=CAL93339.1;Note=Replicative DNA helicase (EC 3.6.1.-). PARTICIPATES IN INITIATION AND ELONGATION DURING CHROMOSOME REPLICATION%3B IT EXHIBITS DNA-DEPENDENT ATPASE ACTIVITY AND CONTAINS DISTINCT ACTIVE SITES FOR ATP BINDING DNA BINDING AND INTERACTION WITH DNAC PROTEIN PRIMASE AND OTHER PREPRIMING PROTEINS. InterPro: DnaB helicase%3B~High confidence in function and specificity;gbkey=CDS;gene=dnaB;product=DnaB protein;protein_id=CAL93339.1;transl_table=11
AM406670.1	EMBL	gene	770728	772261	.	+	.	ID=gene728;Name=azo_rrn7;gbkey=Gene;gene_biotype=rRNA;locus_tag=azo_rrn7
AM406670.1	EMBL	rRNA	770728	772261	.	+	.	ID=rna7;Parent=gene728;gbkey=rRNA
AM406670.1	EMBL	exon	770728	772261	.	+	.	ID=id8;Parent=rna7;gbkey=rRNA
AM406670.1	EMBL	gene	772335	772411	.	+	.	ID=gene729;Name=tRNA-Ile;gbkey=Gene;gene=tRNA-Ile;gene_biotype=tRNA;locus_tag=azo_tRNA_0006
AM406670.1	EMBL	tRNA	772335	772411	.	+	.	ID=rna8;Parent=gene729;anticodon=(pos:772369..772371);gbkey=tRNA;gene=tRNA-Ile;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ile
AM406670.1	EMBL	exon	772335	772411	.	+	.	ID=id9;Parent=rna8;anticodon=(pos:772369..772371);gbkey=tRNA;gene=tRNA-Ile;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ile
AM406670.1	EMBL	gene	772439	772514	.	+	.	ID=gene730;Name=tRNA-Ala;gbkey=Gene;gene=tRNA-Ala;gene_biotype=tRNA;locus_tag=azo_tRNA_0007
AM406670.1	EMBL	tRNA	772439	772514	.	+	.	ID=rna9;Parent=gene730;anticodon=(pos:772472..772474);gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	exon	772439	772514	.	+	.	ID=id10;Parent=rna9;anticodon=(pos:772472..772474);gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	gene	772779	775665	.	+	.	ID=gene731;Name=azo_rrn8;gbkey=Gene;gene_biotype=rRNA;locus_tag=azo_rrn8
AM406670.1	EMBL	rRNA	772779	775665	.	+	.	ID=rna10;Parent=gene731;gbkey=rRNA
AM406670.1	EMBL	exon	772779	775665	.	+	.	ID=id11;Parent=rna10;gbkey=rRNA
AM406670.1	EMBL	gene	776049	777212	.	+	.	ID=gene732;Name=azo0723;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0723
AM406670.1	EMBL	CDS	776049	777212	.	+	0	ID=cds721;Parent=gene732;Dbxref=EnsemblGenomes-Gn:azo0723,EnsemblGenomes-Tr:CAL93340,GOA:A1K3D5,InterPro:IPR002938,InterPro:IPR003042,InterPro:IPR010971,UniProtKB/TrEMBL:A1K3D5,NCBI_GP:CAL93340.1;Name=CAL93340.1;Note=Putative monoxygenase. Pfam: Monoxygenase InterPro: Aromatic-ring hydroxylase (flavoprotein monoxygenase)%3B~High confidence in function and specificity;gbkey=CDS;product=putative monooxygenase;protein_id=CAL93340.1;transl_table=11
AM406670.1	EMBL	gene	777226	777951	.	+	.	ID=gene733;Name=dsbC;gbkey=Gene;gene=dsbC;gene_biotype=protein_coding;locus_tag=azo0724
AM406670.1	EMBL	CDS	777226	777951	.	+	0	ID=cds722;Parent=gene733;Dbxref=EnsemblGenomes-Gn:azo0724,EnsemblGenomes-Tr:CAL93341,GOA:A1K3D6,InterPro:IPR009094,InterPro:IPR012336,InterPro:IPR017937,InterPro:IPR018950,UniProtKB/TrEMBL:A1K3D6,NCBI_GP:CAL93341.1;Name=CAL93341.1;Note=Putative protein disulfide-isomerase. Homology to dsbC of E. coli of 29%25 (sprot|DSBC_ECOLI) REQUIRED FOR DISULFIDE BOND FORMATION IN SOME PERIPLASMIC PROTEINS. ACTS BY TRANSFERRING ITS DISULFIDE BOND TO OTHER PROTEINS AND IS REDUCED IN THE PROCESS. DSBC IS REOXIDIZED BY A YET UNCHARACTERIZED PROTEIN. ALSO ACTS AS A DISULFIDE ISOMERASE. signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=dsbC;product=putative protein disulfide-isomerase;protein_id=CAL93341.1;transl_table=11
AM406670.1	EMBL	gene	777974	779038	.	-	.	ID=gene734;Name=mltA;gbkey=Gene;gene=mltA;gene_biotype=protein_coding;locus_tag=azo0725
AM406670.1	EMBL	CDS	777974	779038	.	-	0	ID=cds723;Parent=gene734;Dbxref=EnsemblGenomes-Gn:azo0725,EnsemblGenomes-Tr:CAL93342,GOA:A1K3D7,InterPro:IPR005300,InterPro:IPR009009,InterPro:IPR010611,InterPro:IPR014733,InterPro:IPR026044,UniProtKB/TrEMBL:A1K3D7,NCBI_GP:CAL93342.1;Name=CAL93342.1;Note=Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) (Murein hydrolase A) (Mlt38). MUREIN-DEGRADING ENZYME. MAY PLAY A ROLE IN RECYCLING OF MUROPEPTIDES DURING CELL ELONGATION AND/OR CELL DIVISION. OPTIMAL ACTIVITY IS BETWEEN PH 4.0 AND 4.5%3B LOSES ITS ACTIVITY RAPIDLY AT TEMPERATURES ABOVE 30 DEGREES CELSIUS. DEGRADES MUREIN GLYCAN STRANDS AND INSOLUBLE HIGH-MOLECULAR WEIGHT MUREIN SACCULI. ssl1: transcription factor ssl1%3B~High confidence in function and specificity;gbkey=CDS;gene=mltA;product=putative membrane-bound transglycolase;protein_id=CAL93342.1;transl_table=11
AM406670.1	EMBL	gene	779280	779393	.	+	.	ID=gene735;Name=azo0726;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0726
AM406670.1	EMBL	CDS	779280	779393	.	+	0	ID=cds724;Parent=gene735;Dbxref=EnsemblGenomes-Gn:azo0726,EnsemblGenomes-Tr:CAL93343,UniProtKB/TrEMBL:A1K3D8,NCBI_GP:CAL93343.1;Name=CAL93343.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93343.1;transl_table=11
AM406670.1	EMBL	gene	779386	780249	.	+	.	ID=gene736;Name=azo0727;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0727
AM406670.1	EMBL	CDS	779386	780249	.	+	0	ID=cds725;Parent=gene736;Dbxref=EnsemblGenomes-Gn:azo0727,EnsemblGenomes-Tr:CAL93344,InterPro:IPR008533,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3D9,NCBI_GP:CAL93344.1;Name=CAL93344.1;Note=Conserved hypothetical ATPase family protein. Homology to bb4427 of B. bronchiseptica of 65%25 (trembl|Q7WF53). Pfam: ATPase family associated with various cellular activities This large family has the key feature that they share a conserved region of about 220 amino acids that contains an ATP-binding site. no signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical ATPase family protein;protein_id=CAL93344.1;transl_table=11
AM406670.1	EMBL	gene	780242	781198	.	+	.	ID=gene737;Name=azo0728;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0728
AM406670.1	EMBL	CDS	780242	781198	.	+	0	ID=cds726;Parent=gene737;Dbxref=EnsemblGenomes-Gn:azo0728,EnsemblGenomes-Tr:CAL93345,GOA:A1K3E0,InterPro:IPR000086,InterPro:IPR003733,InterPro:IPR013785,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR020476,InterPro:IPR022998,UniProtKB/TrEMBL:A1K3E0,NCBI_GP:CAL93345.1;Name=CAL93345.1;Note=NUDIX hydrolase/thiamine phosphate synthase Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate (THZ-P) and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) (By similarity). InterPro: NUDIX hydrolase TIGRFAM: mutt: mutator mutT protein%3B~High confidence in function and specificity;gbkey=CDS;product=bifunctional DGTP-pyrophosphohydrolase/Thiamine-phosphate diphosphorylase;protein_id=CAL93345.1;transl_table=11
AM406670.1	EMBL	gene	781195	781395	.	-	.	ID=gene738;Name=azo0729;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0729
AM406670.1	EMBL	CDS	781195	781395	.	-	0	ID=cds727;Parent=gene738;Dbxref=EnsemblGenomes-Gn:azo0729,EnsemblGenomes-Tr:CAL93346,GOA:A1K3E1,InterPro:IPR005584,InterPro:IPR013088,UniProtKB/TrEMBL:A1K3E1,NCBI_GP:CAL93346.1;Name=CAL93346.1;Note=Conserved hypothetical protein. Homology to RSc2830 of Ralstonia solanacearum of 53%25 (trembl:Q8XVK0). Has PF03884%2C Domain of unknown function (DUF329)%3BIPR005584%3BThe function of this short domain is unknown it contains four conserved cysteines and may therefore be involved in zinc binding. no TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93346.1;transl_table=11
AM406670.1	EMBL	gene	781398	782153	.	-	.	ID=gene739;Name=yacF;gbkey=Gene;gene=yacF;gene_biotype=protein_coding;locus_tag=azo0730
AM406670.1	EMBL	CDS	781398	782153	.	-	0	ID=cds728;Parent=gene739;Dbxref=EnsemblGenomes-Gn:azo0730,EnsemblGenomes-Tr:CAL93347,GOA:A1K3E2,InterPro:IPR009777,InterPro:IPR027462,NCBI_GP:CAL93347.1;Name=CAL93347.1;Note=Hypothetical protein%2C yacF%2C 32%25 identitcal to SwissProt%3BP36680%2CQ8FL56. Has PF07072%2C Protein of unknown function (DUF1342)%3BIPR009777 %3BThis family consists of several hypothetical bacterial proteins of around 250 residues in length. Members of this family are often known as YacF after the Escherichia coli protein P36680. The function of this family is unknown. cobA: cob(I)alamin adenosyltransferase;gbkey=CDS;gene=yacF;product=conserved hypothetical protein;protein_id=CAL93347.1;transl_table=11
AM406670.1	EMBL	gene	782235	782855	.	-	.	ID=gene740;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=azo0731
AM406670.1	EMBL	CDS	782235	782855	.	-	0	ID=cds729;Parent=gene740;Dbxref=EnsemblGenomes-Gn:azo0731,EnsemblGenomes-Tr:CAL93348,GOA:A1K3E3,InterPro:IPR001977,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3E3,NCBI_GP:CAL93348.1;Name=CAL93348.1;Note=Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A kinase). Catalyzes the phosphorylation of the 3-hydroxyl group of dephosphocoenzyme A to form coenzyme A (By similarity). InterPro: Uncharacterized protein family UPF0038 TIGRFAM: TIGR00152: kinase putative%3B~High confidence in function and specificity;gbkey=CDS;gene=coaE;product=CoaE protein;protein_id=CAL93348.1;transl_table=11
AM406670.1	EMBL	gene	782852	783562	.	-	.	ID=gene741;Name=azo0732;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0732
AM406670.1	EMBL	CDS	782852	783562	.	-	0	ID=cds730;Parent=gene741;Dbxref=EnsemblGenomes-Gn:azo0732,EnsemblGenomes-Tr:CAL93349,InterPro:IPR007730,UniProtKB/TrEMBL:A1K3E4,NCBI_GP:CAL93349.1;Name=CAL93349.1;Note=Conserved hypothetical secreted protein. Homology to rs03277 of R. solanacearum of 30%25 (TrEMBL:Q8Y2M5). No domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93349.1;transl_table=11
AM406670.1	EMBL	gene	783572	784363	.	-	.	ID=gene742;Name=baf;gbkey=Gene;gene=baf;gene_biotype=protein_coding;locus_tag=azo0733
AM406670.1	EMBL	CDS	783572	784363	.	-	0	ID=cds731;Parent=gene742;Dbxref=EnsemblGenomes-Gn:azo0733,EnsemblGenomes-Tr:CAL93350,GOA:A1K3E5,InterPro:IPR004619,NCBI_GP:CAL93350.1;Name=CAL93350.1;Note=Bvg accessory factor. Activates transcription of the pertussis toxin operon in a bvgAS-dependent manner. May interact with the alpha subunit of RNA polymerase. Similar to SWISSPROT: sprot|BAF_BORPE (29%25 Bordetella pertussis%2C bvg accessory factor baf or bp0097) InterPro: IPR004619 Baf. TIGRFAM: TIGR00671 transcriptional activator%2C putative%2C Baf family.%3B~High confidence in function and specificity;gbkey=CDS;gene=baf;product=probable Bvg accessory factor;protein_id=CAL93350.1;transl_table=11
AM406670.1	EMBL	gene	784360	785088	.	-	.	ID=gene743;Name=birA;gbkey=Gene;gene=birA;gene_biotype=protein_coding;locus_tag=azo0734
AM406670.1	EMBL	CDS	784360	785088	.	-	0	ID=cds732;Parent=gene743;Dbxref=EnsemblGenomes-Gn:azo0734,EnsemblGenomes-Tr:CAL93351,GOA:A1K3E6,InterPro:IPR003142,InterPro:IPR004143,InterPro:IPR004408,InterPro:IPR008988,UniProtKB/TrEMBL:A1K3E6,NCBI_GP:CAL93351.1;Name=CAL93351.1;Note=BirA bifunctional protein [Includes: Biotin operon repressor%3B Biotin--[acetyl-CoA-carboxylase] synthetase (EC 6.3.4.15) (Biotin--protein ligase)]. birA acts both as a biotin-operon repressor and as the enzyme that synthesizes the corepressor%2C acetyl-coa:carbon- dioxide ligase. this protein also activates biotin to form biotinyl-5'-adenylate and transfers the biotin moiety to biotin-accepting proteins. InterPro: Biotin--acetyl-CoA-carboxylase ligase birA_ligase: biotin--acetyl-CoA-carboxyla%3B~Specificity unclear;gbkey=CDS;gene=birA;product=biotin--[acetyl-CoA-carboxylase] ligase;protein_id=CAL93351.1;transl_table=11
AM406670.1	EMBL	gene	785250	786680	.	-	.	ID=gene744;Name=ntrC;gbkey=Gene;gene=ntrC;gene_biotype=protein_coding;locus_tag=azo0735
AM406670.1	EMBL	CDS	785250	786680	.	-	0	ID=cds733;Parent=gene744;Dbxref=EnsemblGenomes-Gn:azo0735,EnsemblGenomes-Tr:CAL93352,GOA:A1K3E7,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR010114,InterPro:IPR011006,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3E7,NCBI_GP:CAL93352.1;Name=CAL93352.1;Note=Nitrogen regulation protein NR(I)%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=ntrC;product=nitrogen regulation protein NR(I);protein_id=CAL93352.1;transl_table=11
AM406670.1	EMBL	gene	786724	787797	.	-	.	ID=gene745;Name=ntrB;gbkey=Gene;gene=ntrB;gene_biotype=protein_coding;locus_tag=azo0736
AM406670.1	EMBL	CDS	786724	787797	.	-	0	ID=cds734;Parent=gene745;Dbxref=EnsemblGenomes-Gn:azo0736,EnsemblGenomes-Tr:CAL93353,GOA:A1K3E8,InterPro:IPR000014,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1K3E8,NCBI_GP:CAL93353.1;Name=CAL93353.1;Note=Nitrogen regulation protein NR(II)%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=ntrB;product=nitrogen regulation protein NR(II);protein_id=CAL93353.1;transl_table=11
AM406670.1	EMBL	gene	787859	788335	.	-	.	ID=gene746;Name=azo0737;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0737
AM406670.1	EMBL	CDS	787859	788335	.	-	0	ID=cds735;Parent=gene746;Dbxref=EnsemblGenomes-Gn:azo0737,EnsemblGenomes-Tr:CAL93354,InterPro:IPR025392,UniProtKB/TrEMBL:A1K3E9,NCBI_GP:CAL93354.1;Name=CAL93354.1;Note=Conserved hypothetical secreted protein. Homology to cv3590 of C. violaceum of 39%25 (trembl|Q7NS37(SRS)) no domains predicted signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93354.1;transl_table=11
AM406670.1	EMBL	gene	788464	789873	.	-	.	ID=gene747;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=azo0738
AM406670.1	EMBL	CDS	788464	789873	.	-	0	ID=cds736;Parent=gene747;Dbxref=EnsemblGenomes-Gn:azo0738,EnsemblGenomes-Tr:CAL93355,GOA:A1K3F0,InterPro:IPR001637,InterPro:IPR004809,InterPro:IPR008146,InterPro:IPR008147,InterPro:IPR014746,InterPro:IPR027302,InterPro:IPR027303,UniProtKB/TrEMBL:A1K3F0,NCBI_GP:CAL93355.1;Name=CAL93355.1;Note=Glutamine synthetase I (GS) plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. Similar to pir|G83005 (70%25) and to pir|AJECQ (66%25). Pfam (PF00120): Glutamine synthetase%2C catalytic domain Pfam (PF03951): Glutamine synthetase%2C beta-Grasp domain%3B~High confidence in function and specificity;gbkey=CDS;gene=glnA;product=glutamine synthetase I;protein_id=CAL93355.1;transl_table=11
AM406670.1	EMBL	gene	790055	791269	.	-	.	ID=gene748;Name=czcD1;gbkey=Gene;gene=czcD1;gene_biotype=protein_coding;locus_tag=azo0739
AM406670.1	EMBL	CDS	790055	791269	.	-	0	ID=cds737;Parent=gene748;Dbxref=EnsemblGenomes-Gn:azo0739,EnsemblGenomes-Tr:CAL93356,GOA:A1K3F1,InterPro:IPR002524,InterPro:IPR027469,InterPro:IPR027470,UniProtKB/TrEMBL:A1K3F1,NCBI_GP:CAL93356.1;Name=CAL93356.1;Note=CzcD: Members of this family (TC 2.A.4) are integral membrane proteins that are found to increase tolerance to divalent metal ions such as cadmium%2C zinc%2Cand cobalt. These proteins are thought to be efflux pumps that remove these ions from cells. (Slc30a subfamily). Similar to the cobalt-zinc-cadmium resistance protein CzcD (cation efflux system protein) from Alcaligenes eutrophus (Ralstonia eutropha). SWISSPROT:CZCD_ALCEU.P13512. InterPro:IPR002524%3B Cation_efflux.InterPro: Cation efflux family. Pfam:PF01545%3B Cation_efflux%3B 1. TIGRFAMs:TIGR01297%3B CDF%3B 1. TMHelix: 4.%3B~High confidence in function and specificity;gbkey=CDS;gene=czcD1;product=putative cobalt-zinc-cadmium resistance protein;protein_id=CAL93356.1;transl_table=11
AM406670.1	EMBL	gene	791287	791739	.	+	.	ID=gene749;Name=azo0740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0740
AM406670.1	EMBL	CDS	791287	791739	.	+	0	ID=cds738;Parent=gene749;Dbxref=EnsemblGenomes-Gn:azo0740,EnsemblGenomes-Tr:CAL93357,GOA:A1K3F2,InterPro:IPR001763,UniProtKB/TrEMBL:A1K3F2,NCBI_GP:CAL93357.1;Name=CAL93357.1;Note=Similar to Rhodanese domain protein%2C a sulphurtransferase involved in cyanide detoxification. InterPro: Rhodanese/cdc25 fold%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical sulphurtransferase protein;protein_id=CAL93357.1;transl_table=11
AM406670.1	EMBL	gene	791814	792914	.	+	.	ID=gene750;Name=nadA;gbkey=Gene;gene=nadA;gene_biotype=protein_coding;locus_tag=azo0741
AM406670.1	EMBL	CDS	791814	792914	.	+	0	ID=cds739;Parent=gene750;Dbxref=EnsemblGenomes-Gn:azo0741,EnsemblGenomes-Tr:CAL93358,GOA:A1K3F3,InterPro:IPR003473,InterPro:IPR023515,UniProtKB/TrEMBL:A1K3F3,NCBI_GP:CAL93358.1;Name=CAL93358.1;Note=Quinolinate synthetase A. Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate. InterPro: Quinolinate synthetase A protein TIGRFAM: nadA: quinolinate synthetase complex%3B~High confidence in function and specificity;gbkey=CDS;gene=nadA;product=quinolinate synthetase;protein_id=CAL93358.1;transl_table=11
AM406670.1	EMBL	gene	792936	793685	.	+	.	ID=gene751;Name=azo0742;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0742
AM406670.1	EMBL	CDS	792936	793685	.	+	0	ID=cds740;Parent=gene751;Dbxref=EnsemblGenomes-Gn:azo0742,EnsemblGenomes-Tr:CAL93359,InterPro:IPR005135,UniProtKB/TrEMBL:A1K3F4,NCBI_GP:CAL93359.1;Name=CAL93359.1;Note=Conserved hypothetical protein. Homology to rs04427 of R. solanacearum of 55%25 (trembl|Q8Y267). Pfam: Endonuclease/Exonuclease/phosphatase family (PF03372). Interpro: Endonuclease/Exonuclease/phosphatase family (IPR005135). no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93359.1;transl_table=11
AM406670.1	EMBL	gene	793682	794839	.	+	.	ID=gene752;Name=cls1;gbkey=Gene;gene=cls1;gene_biotype=protein_coding;locus_tag=azo0743
AM406670.1	EMBL	CDS	793682	794839	.	+	0	ID=cds741;Parent=gene752;Dbxref=EnsemblGenomes-Gn:azo0743,EnsemblGenomes-Tr:CAL93360,GOA:A1K3F5,InterPro:IPR001736,InterPro:IPR025202,UniProtKB/TrEMBL:A1K3F5,NCBI_GP:CAL93360.1;Name=CAL93360.1;Note=Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. Affects resistance to the gyrase inhibitor novobiocin. Entry name: CLS_ECOLI Primary accession number P31071 InterPro IPR001736%3B PLD. Pfam PF00614%3B PLDc%3B 2 Identity:-28%25 Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=cls1;product=putative cardiolipin synthetase;protein_id=CAL93360.1;transl_table=11
AM406670.1	EMBL	gene	794846	795355	.	-	.	ID=gene753;Name=azo0744;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0744
AM406670.1	EMBL	CDS	794846	795355	.	-	0	ID=cds742;Parent=gene753;Dbxref=EnsemblGenomes-Gn:azo0744,EnsemblGenomes-Tr:CAL93361,GOA:A1K3F6,InterPro:IPR003781,InterPro:IPR016040,UniProtKB/TrEMBL:A1K3F6,NCBI_GP:CAL93361.1;Name=CAL93361.1;Note=Protein yccU. TREMBL:Q982W3: 50%25 identity%2C 70%25 similarity. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases%2C malate and ATP-citrate ligases. InterPro:IPR003781%3B CoA_binding. Pfam: PF02629%3B CoA_binding FRU: PTS enzyme-IIB fructose permease No signal peptide. No transmembrane helices present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93361.1;transl_table=11
AM406670.1	EMBL	gene	795366	796367	.	-	.	ID=gene754;Name=azo0745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0745
AM406670.1	EMBL	CDS	795366	796367	.	-	0	ID=cds743;Parent=gene754;Dbxref=EnsemblGenomes-Gn:azo0745,EnsemblGenomes-Tr:CAL93362,GOA:A1K3F7,InterPro:IPR000924,InterPro:IPR014729,InterPro:IPR020058,InterPro:IPR022380,UniProtKB/TrEMBL:A1K3F7,NCBI_GP:CAL93362.1;Name=CAL93362.1;Note=Putative glutamyl-tRNA synthetase-related protein%2C58%25 identity to TrEMBl%3B Q5P2J9%2C47%25 identity to TrEMBL%3B Q7NSJ1. Has PF00749%2C tRNA synthetases class I (E and Q)%2Ccatalytic domain.Other tRNA synthetase sub-families are too dis%3B~Specificity unclear;gbkey=CDS;product=Glutamate-tRNA ligase;protein_id=CAL93362.1;transl_table=11
AM406670.1	EMBL	gene	796481	798106	.	+	.	ID=gene755;Name=azo0746;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0746
AM406670.1	EMBL	CDS	796481	798106	.	+	0	ID=cds744;Parent=gene755;Dbxref=EnsemblGenomes-Gn:azo0746,EnsemblGenomes-Tr:CAL93363,UniProtKB/TrEMBL:A1K3F8,NCBI_GP:CAL93363.1;Name=CAL93363.1;Note=Hypothetical membrane protein. Homology to la0834 of L. interrogans of 25%25 (trembl|Q8F7U9). InterPro: Dolichyl-phosphate-mannose-protein mannosyltransferase (IPR003342). Dolichyl-phosphate-mannose-protein mannosyltransferase proteins belong to the glycosyltransferase family 39 and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. Pfam: Dolichyl-phosphate-mannose-protein mannosyltransferase. signal peptide. 10 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93363.1;transl_table=11
AM406670.1	EMBL	gene	798162	799442	.	+	.	ID=gene756;Name=azo0747;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0747
AM406670.1	EMBL	CDS	798162	799442	.	+	0	ID=cds745;Parent=gene756;Dbxref=EnsemblGenomes-Gn:azo0747,EnsemblGenomes-Tr:CAL93364,GOA:A1K3F9,InterPro:IPR011040,UniProtKB/TrEMBL:A1K3F9,NCBI_GP:CAL93364.1;Name=CAL93364.1;Note=40%25 GH_BNR. Pfam:PF02012%3B BNR%3B 2. TMHelix:1. Signal peptide: present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93364.1;transl_table=11
AM406670.1	EMBL	gene	799936	800856	.	-	.	ID=gene757;Name=azo0748;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0748
AM406670.1	EMBL	CDS	799936	800856	.	-	0	ID=cds746;Parent=gene757;Dbxref=EnsemblGenomes-Gn:azo0748,EnsemblGenomes-Tr:CAL93365,GOA:A1K3G0,InterPro:IPR002509,InterPro:IPR006879,InterPro:IPR011330,UniProtKB/TrEMBL:A1K3G0,NCBI_GP:CAL93365.1;Name=CAL93365.1;Note=Probable cellobiose phosphorylase%2C 31%25 identity to TrEMBL%3BQ7NYW4. Has PF04794%2C YdjC-like protein%3BIPR006879%3B Family of YdjC-like proteins. This region is possibly involved in the the cleavage of cellobiose-phosphate.%3B~Function unclear;gbkey=CDS;product=cellobiose phosphorylase;protein_id=CAL93365.1;transl_table=11
AM406670.1	EMBL	gene	800954	801982	.	+	.	ID=gene758;Name=azo0749;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0749
AM406670.1	EMBL	CDS	800954	801982	.	+	0	ID=cds747;Parent=gene758;Dbxref=EnsemblGenomes-Gn:azo0749,EnsemblGenomes-Tr:CAL93366,GOA:A1K3G1,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:A1K3G1,NCBI_GP:CAL93366.1;Name=CAL93366.1;Note=Conserved hypothetical glycosyl transferase. Homology to cc2889 of. C. crescentus (trembl|Q9A4E5). Pfam: Glycosyl transferase family 2(PF00535). Diverse family%2C transferring sugar from UDP-glucose%2C UDP-N-acetyl-galactosamine%2C GDP-mannose or CDP-abequose%2C to a range of substrates including cellulose%2C dolichol phosphate and teichoic acids. Interpro: Glycosyl transferase family 2 (IPR001173). no signal peptide. 2 TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical glycosyl transferase;protein_id=CAL93366.1;transl_table=11
AM406670.1	EMBL	gene	802057	803655	.	+	.	ID=gene759;Name=azo0750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0750
AM406670.1	EMBL	CDS	802057	803655	.	+	0	ID=cds748;Parent=gene759;Dbxref=EnsemblGenomes-Gn:azo0750,EnsemblGenomes-Tr:CAL93367,UniProtKB/TrEMBL:A1K3G2,NCBI_GP:CAL93367.1;Name=CAL93367.1;Note=Conserved hypothetical membrane protein. TREMBL:Q89QQ8: 34%25 identity This is a subfamily of bacterial binding-protein-dependent transport systems family%2C and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system InterPro: IPR000522%3B FecD. Pfam: PF01032%3B FecCD ncs1: NCS1 nucleoside transporter fam Nonsecretory protein with signal peptide probability 0.203 (Signal P predicted). TMHMM predicted 9 transmembrane helices.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93367.1;transl_table=11
AM406670.1	EMBL	gene	803652	804053	.	+	.	ID=gene760;Name=azo0751;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0751
AM406670.1	EMBL	CDS	803652	804053	.	+	0	ID=cds749;Parent=gene760;Dbxref=EnsemblGenomes-Gn:azo0751,EnsemblGenomes-Tr:CAL93368,GOA:A1K3G3,InterPro:IPR007267,UniProtKB/TrEMBL:A1K3G3,NCBI_GP:CAL93368.1;Name=CAL93368.1;Note=Conserved hypothetical membrane protein. Homology to PA4820 of P. aeruginosa of 38%25 (trembl|Q9HUZ0(SRS)) Has PF04138%2C GtrA-like protein%3BIPR007267%3BMembers of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX)%2C but does not determine the specificity of glucosylation. Its function remains unknown%2C but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. no signal peptide 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93368.1;transl_table=11
AM406670.1	EMBL	gene	804105	805196	.	-	.	ID=gene761;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=azo0752
AM406670.1	EMBL	CDS	804105	805196	.	-	0	ID=cds750;Parent=gene761;Dbxref=EnsemblGenomes-Gn:azo0752,EnsemblGenomes-Tr:CAL93369,GOA:A1K3G4,InterPro:IPR004396,InterPro:IPR006073,InterPro:IPR012675,InterPro:IPR012676,InterPro:IPR013029,InterPro:IPR023192,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3G4,NCBI_GP:CAL93369.1;Name=CAL93369.1;Note=Probable GTP-binding protein ychF (ORF-3). InterPro: Conserved hypothetical protein 92 TIGR00092: conserved hypothetical prote%3B~High confidence in function and specificity;gbkey=CDS;gene=ychF;product=conserved hypothetical protein;protein_id=CAL93369.1;transl_table=11
AM406670.1	EMBL	gene	805193	805849	.	-	.	ID=gene762;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=azo0753
AM406670.1	EMBL	CDS	805193	805849	.	-	0	ID=cds751;Parent=gene762;Dbxref=EnsemblGenomes-Gn:azo0753,EnsemblGenomes-Tr:CAL93370,GOA:A1K3G5,InterPro:IPR001328,InterPro:IPR018171,NCBI_GP:CAL93370.1;Name=CAL93370.1;Note=Peptidyl-tRNA hydrolase (EC 3.1.1.29) . The natural substrate for this enzyme may be peptidyl- tRNAS which drop off the ribosome during protein synthesis.%3B~High confidence in function and specificity;gbkey=CDS;gene=pth;product=Pth protein;protein_id=CAL93370.1;transl_table=11
AM406670.1	EMBL	gene	805889	806491	.	-	.	ID=gene763;Name=rplY;gbkey=Gene;gene=rplY;gene_biotype=protein_coding;locus_tag=azo0754
AM406670.1	EMBL	CDS	805889	806491	.	-	0	ID=cds752;Parent=gene763;Dbxref=EnsemblGenomes-Gn:azo0754,EnsemblGenomes-Tr:CAL93371,GOA:A1K3G6,InterPro:IPR001021,InterPro:IPR011035,InterPro:IPR020055,InterPro:IPR020056,InterPro:IPR020057,InterPro:IPR029751,NCBI_GP:CAL93371.1;Name=CAL93371.1;Note=50S ribosomal protein L25. BINDS TO THE 5S RRNA%3B~High confidence in function and specificity;gbkey=CDS;gene=rplY;product=50S ribosomal protein L25;protein_id=CAL93371.1;transl_table=11
AM406670.1	EMBL	gene	806573	807523	.	-	.	ID=gene764;Name=prsA;gbkey=Gene;gene=prsA;gene_biotype=protein_coding;locus_tag=azo0755
AM406670.1	EMBL	CDS	806573	807523	.	-	0	ID=cds753;Parent=gene764;Dbxref=EnsemblGenomes-Gn:azo0755,EnsemblGenomes-Tr:CAL93372,GOA:A1K3G7,InterPro:IPR000842,InterPro:IPR005946,InterPro:IPR029057,InterPro:IPR029099,UniProtKB/TrEMBL:A1K3G7,NCBI_GP:CAL93372.1;Name=CAL93372.1;Note=Ribose-phosphate pyrophosphokinase (RPPK) (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase)%3B~High confidence in function and specificity;gbkey=CDS;gene=prsA;product=Ribose-phosphate diphosphokinase;protein_id=CAL93372.1;transl_table=11
AM406670.1	EMBL	gene	807603	807679	.	-	.	ID=gene765;Name=tRNA-Gln;gbkey=Gene;gene=tRNA-Gln;gene_biotype=tRNA;locus_tag=azo_tRNA_0008
AM406670.1	EMBL	tRNA	807603	807679	.	-	.	ID=rna11;Parent=gene765;anticodon=(pos:complement(807643..807645));gbkey=tRNA;gene=tRNA-Gln;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Gln
AM406670.1	EMBL	exon	807603	807679	.	-	.	ID=id12;Parent=rna11;anticodon=(pos:complement(807643..807645));gbkey=tRNA;gene=tRNA-Gln;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Gln
AM406670.1	EMBL	gene	807698	808546	.	-	.	ID=gene766;Name=ispE;gbkey=Gene;gene=ispE;gene_biotype=protein_coding;locus_tag=azo0756
AM406670.1	EMBL	CDS	807698	808546	.	-	0	ID=cds754;Parent=gene766;Dbxref=EnsemblGenomes-Gn:azo0756,EnsemblGenomes-Tr:CAL93373,GOA:A1K3G8,InterPro:IPR004424,InterPro:IPR006204,InterPro:IPR013750,InterPro:IPR014721,InterPro:IPR020568,NCBI_GP:CAL93373.1;Name=CAL93373.1;Note=FUNCTION: Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. Phosphorylates isopentenyl phosphate at low rates. Also acts on isopentenol%2C and%2C much less efficiently%2C dimethylallyl alcohol. Dimethylallyl monophosphate does not serve as a substrate. CATALYTIC ACTIVITY: ATP + 4-(cytidine5'-diphospho)-2-C-methyl-D-erythritol %3D ADP + 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol. Entry name SWISSPROT:ISPE_ECOLI Prim. accession # P24209 Identities %3D 133/274 (48%25) InterPro IPR006204%3B GHMP_kinase. IPR004424%3B IspE. Pfam PF00288%3B GHMP_kinases%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.006 Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=ispE;product=probable 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;protein_id=CAL93373.1;transl_table=11
AM406670.1	EMBL	gene	808543	809124	.	-	.	ID=gene767;Name=lolB;gbkey=Gene;gene=lolB;gene_biotype=protein_coding;locus_tag=azo0757
AM406670.1	EMBL	CDS	808543	809124	.	-	0	ID=cds755;Parent=gene767;Dbxref=EnsemblGenomes-Gn:azo0757,EnsemblGenomes-Tr:CAL93374,GOA:A1K3G9,InterPro:IPR004565,InterPro:IPR029046,NCBI_GP:CAL93374.1;Name=CAL93374.1;Note=conserved hypothetical outer-membrane lipoprotein. Homology to lolB of C. violaceum of 32%25 (sprot|LOLB_CHRVO) Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the lolA protein (By similarity). Tigrfam: lolB: outer membrane lipoprotein LolB Pfam: outer membrane lipoprotein LolB signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=lolB;product=conserved hypothetical outer membrane lipoprotein;protein_id=CAL93374.1;transl_table=11
AM406670.1	EMBL	gene	809121	810836	.	-	.	ID=gene768;Name=azo0758;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0758
AM406670.1	EMBL	CDS	809121	810836	.	-	0	ID=cds756;Parent=gene768;Dbxref=EnsemblGenomes-Gn:azo0758,EnsemblGenomes-Tr:CAL93375,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR019734,UniProtKB/TrEMBL:A1K3H0,NCBI_GP:CAL93375.1;Name=CAL93375.1;Note=Conserved hypothetical secreted protein. Homology to cv4061 of C. violaceum of 37%25 (trembl|Q7NQS6). InterPro: TPR repeat (IPR001440) signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93375.1;transl_table=11
AM406670.1	EMBL	gene	810989	811807	.	+	.	ID=gene769;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=azo0759
AM406670.1	EMBL	CDS	810989	811807	.	+	0	ID=cds757;Parent=gene769;Dbxref=EnsemblGenomes-Gn:azo0759,EnsemblGenomes-Tr:CAL93376,GOA:A1K3H1,InterPro:IPR000191,InterPro:IPR000214,InterPro:IPR010663,InterPro:IPR010979,InterPro:IPR012319,InterPro:IPR015886,InterPro:IPR015887,InterPro:IPR020629,UniProtKB/TrEMBL:A1K3H1,NCBI_GP:CAL93376.1;Name=CAL93376.1;Note=Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) (Fapy-DNA glycosylase). This enzyme may play a significant role in processes leading to recovery from mutagenesis and/or cell death by alkylating agents. Also involved in the go system responsible for removing an oxidatively damaged form of guanine (78-dihydro-8- oxoguanine %3D 7-OxoG) from DNA. Can also nick DNA at apurinic/apyrimidinic sites (AP sites) (By similarity). InterPro: Formamidopyrimidine-DNA glycolase%3B~High confidence in function and specificity;gbkey=CDS;gene=mutM;product=MutM protein;protein_id=CAL93376.1;transl_table=11
AM406670.1	EMBL	gene	811931	813898	.	+	.	ID=gene770;Name=azo0760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0760
AM406670.1	EMBL	CDS	811931	813898	.	+	0	ID=cds758;Parent=gene770;Dbxref=EnsemblGenomes-Gn:azo0760,EnsemblGenomes-Tr:CAL93377,GOA:A1K3H2,InterPro:IPR001401,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3H2,NCBI_GP:CAL93377.1;Name=CAL93377.1;Note=TREMBL:Q8Y2D6:42%25 identity%2C 59%25 similarity Hypothetical protein in xynA 3region (ORF6) (Fragment). Pfam:dynamin_2 :Dynamin central region%3B FH2:Formin Homology 2 Domain surE: stationary-phase survival prote No transmembrane helices(TMHMM predicted)%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93377.1;transl_table=11
AM406670.1	EMBL	gene	813966	814223	.	-	.	ID=gene771;Name=fdx1;gbkey=Gene;gene=fdx1;gene_biotype=protein_coding;locus_tag=azo0761
AM406670.1	EMBL	CDS	813966	814223	.	-	0	ID=cds759;Parent=gene771;Dbxref=EnsemblGenomes-Gn:azo0761,EnsemblGenomes-Tr:CAL93378,GOA:A1K3H3,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K3H3,NCBI_GP:CAL93378.1;Name=CAL93378.1;Note=Probable ferredoxin. Homology to fdx of C. vinosum of 67%25 (sprot|FER_CHRVI). Ferredons are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Pfam: 4Fe-4S binding domain no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=fdx1;product=probable ferredoxin;protein_id=CAL93378.1;transl_table=11
AM406670.1	EMBL	gene	814240	814731	.	-	.	ID=gene772;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=azo0762
AM406670.1	EMBL	CDS	814240	814731	.	-	0	ID=cds760;Parent=gene772;Dbxref=EnsemblGenomes-Gn:azo0762,EnsemblGenomes-Tr:CAL93379,GOA:A1K3H4,InterPro:IPR001980,InterPro:IPR004821,InterPro:IPR014729,NCBI_GP:CAL93379.1;Name=CAL93379.1;Note=Pantetheine- phosphate adenylyltransferas (PPAT) reversibly transfers an adenylyl group from ATP to 4-phosphopantetheine yielding dephospho-CoA (dPCoA) and pyrophosphate (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=coaD;product=Pantetheine-phosphate adenylyltransferase;protein_id=CAL93379.1;transl_table=11
AM406670.1	EMBL	gene	814728	815249	.	-	.	ID=gene773;Name=azo0763;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0763
AM406670.1	EMBL	CDS	814728	815249	.	-	0	ID=cds761;Parent=gene773;Dbxref=EnsemblGenomes-Gn:azo0763,EnsemblGenomes-Tr:CAL93380,GOA:A1K3H5,InterPro:IPR002052,InterPro:IPR004398,InterPro:IPR029063,UniProtKB/TrEMBL:A1K3H5,NCBI_GP:CAL93380.1;Name=CAL93380.1;Note=Putative methylase%3B~Family membership;gbkey=CDS;product=putative methylase;protein_id=CAL93380.1;transl_table=11
AM406670.1	EMBL	gene	815264	816616	.	-	.	ID=gene774;Name=azo0764;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0764
AM406670.1	EMBL	CDS	815264	816616	.	-	0	ID=cds762;Parent=gene774;Dbxref=EnsemblGenomes-Gn:azo0764,EnsemblGenomes-Tr:CAL93381,GOA:A1K3H6,InterPro:IPR007863,InterPro:IPR011237,InterPro:IPR011249,InterPro:IPR011765,UniProtKB/TrEMBL:A1K3H6,NCBI_GP:CAL93381.1;Name=CAL93381.1;Note=Hypothetical zinc protease-like protein y4wB. TREMBL:Q8Y2E8: 43%25 identity%3B 57%25 similarity. InterPro: Insulinase family (Peptidase family M16) InterPro:IPR001431%3B Peptidase_M16. IPR007863: Peptidase_M16_C. Pfam:PF00675%3B Peptidase_M16 (Insulinase)%3B homoserine_dh%3B aldehyde dehydrogenase%3B PF05193:Peptidase_M16_C%3B precor6x_red: precorrin-6x reductase TIGRFAM:folate/biopterin transporter SignalP predicted signal peptide and TMHMM predicted transmembrane helix%3B~Specificity unclear;gbkey=CDS;product=probable Zn dependent peptidase;protein_id=CAL93381.1;transl_table=11
AM406670.1	EMBL	gene	816645	818111	.	-	.	ID=gene775;Name=azo0765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0765
AM406670.1	EMBL	CDS	816645	818111	.	-	0	ID=cds763;Parent=gene775;Dbxref=EnsemblGenomes-Gn:azo0765,EnsemblGenomes-Tr:CAL93382,GOA:A1K3H7,InterPro:IPR001431,InterPro:IPR007863,InterPro:IPR011237,InterPro:IPR011249,InterPro:IPR011765,UniProtKB/TrEMBL:A1K3H7,NCBI_GP:CAL93382.1;Name=CAL93382.1;Note=TREMBL:Q8Y2E9: 55%25 identity%2C 68%25 similarity. Hypothetical zinc protease y4wA. InterPro:IPR001431%3B Peptidase_M16. IPR007863: Peptidase_M16_C. cofactor:binds 1 zinc ion per subunit (by similarity). belongs to peptidase family m16. similarity:to y4wb. Pfam:PF00675%3B Peptidase_M16%3B 1. PF05193:Peptidase_M16_C TIGRFAM: uxuA SignalP predicted signal peptide and TMHMM predicted transmembrane helices menD: 2-succinyl-6-hydroxy-24-cyclohex%3B~Specificity unclear;gbkey=CDS;product=probable Zn dependent peptidase;protein_id=CAL93382.1;transl_table=11
AM406670.1	EMBL	gene	818232	819365	.	+	.	ID=gene776;Name=FtsY;gbkey=Gene;gene=FtsY;gene_biotype=protein_coding;locus_tag=azo0766
AM406670.1	EMBL	CDS	818232	819365	.	+	0	ID=cds764;Parent=gene776;Dbxref=EnsemblGenomes-Gn:azo0766,EnsemblGenomes-Tr:CAL93383,GOA:A1K3H8,InterPro:IPR000897,InterPro:IPR003593,InterPro:IPR004390,InterPro:IPR013822,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3H8,NCBI_GP:CAL93383.1;Name=CAL93383.1;Note=Probable signal recognition particle-docing protein FtsY Homology to ftsY of C. violaceum of 65%25 (trembl|Q7NQD7) In E.coli%2C ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX%2C but its apparent function is as the signal recognition particle docking protein. Pfam: SRP54-type protein%2C helical bundle domain (PF02881)%3B SRP54-type protein%2C GTPase domain Tigrfam: ftsY: signal recognition particale-docking protein FtsY no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=FtsY;product=probable signal recognition particle-docing protein FtsY;protein_id=CAL93383.1;transl_table=11
AM406670.1	EMBL	gene	819362	820021	.	+	.	ID=gene777;Name=FtsE;gbkey=Gene;gene=FtsE;gene_biotype=protein_coding;locus_tag=azo0767
AM406670.1	EMBL	CDS	819362	820021	.	+	0	ID=cds765;Parent=gene777;Dbxref=EnsemblGenomes-Gn:azo0767,EnsemblGenomes-Tr:CAL93384,GOA:A1K3H9,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3H9,NCBI_GP:CAL93384.1;Name=CAL93384.1;Note=High confidence in function and specificity;gbkey=CDS;gene=FtsE;product=probable cell division ATP-binding protein FtsE;protein_id=CAL93384.1;transl_table=11
AM406670.1	EMBL	gene	820018	820914	.	+	.	ID=gene778;Name=FtsX;gbkey=Gene;gene=FtsX;gene_biotype=protein_coding;locus_tag=azo0768
AM406670.1	EMBL	CDS	820018	820914	.	+	0	ID=cds766;Parent=gene778;Dbxref=EnsemblGenomes-Gn:azo0768,EnsemblGenomes-Tr:CAL93385,GOA:A1K3I0,InterPro:IPR003838,InterPro:IPR004513,UniProtKB/TrEMBL:A1K3I0,NCBI_GP:CAL93385.1;Name=CAL93385.1;Note=Putative cell division protein FtsX. Homology to ftsX of E. coli of 33%25 (sprot|FTSX_ECOLI). FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. Might be a permease. Tigrfam: ftsX: cell division ABC transporter protein probable signal peptide probable 4 TMHs%3B~Family membership;gbkey=CDS;gene=FtsX;product=putative cell division protein FtsX;protein_id=CAL93385.1;transl_table=11
AM406670.1	EMBL	gene	821109	821672	.	+	.	ID=gene779;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;locus_tag=azo0769
AM406670.1	EMBL	CDS	821109	821672	.	+	0	ID=cds767;Parent=gene779;Dbxref=EnsemblGenomes-Gn:azo0769,EnsemblGenomes-Tr:CAL93386,GOA:A1K3I1,InterPro:IPR000866,InterPro:IPR012336,InterPro:IPR017559,InterPro:IPR019479,InterPro:IPR024706,UniProtKB/TrEMBL:A1K3I1,NCBI_GP:CAL93386.1;Name=CAL93386.1;Note=Alkyl hydroperoxide reductase subunit C. Homology to aphC of X. campestris of 84%25 (trembl|O06464). Directly reduces organic hydroperoxides in its reduced dithiol form. InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (IPR000866) Pfam: AhpC/TSA family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ahpC;product=alkyl hydroperoxide reductase subunit C;protein_id=CAL93386.1;transl_table=11
AM406670.1	EMBL	gene	821802	823355	.	+	.	ID=gene780;Name=ahpF;gbkey=Gene;gene=ahpF;gene_biotype=protein_coding;locus_tag=azo0770
AM406670.1	EMBL	CDS	821802	823355	.	+	0	ID=cds768;Parent=gene780;Dbxref=EnsemblGenomes-Gn:azo0770,EnsemblGenomes-Tr:CAL93387,GOA:A1K3I2,InterPro:IPR000103,InterPro:IPR001327,InterPro:IPR002109,InterPro:IPR008255,InterPro:IPR012081,InterPro:IPR012336,InterPro:IPR013027,InterPro:IPR023753,UniProtKB/TrEMBL:A1K3I2,NCBI_GP:CAL93387.1;Name=CAL93387.1;Note=Alkyl hydroperoxide reductase subunit F. Homology to aphF of X. campestris of 71%25 (sprot|AHPF_XANCH) Serves to protect the cell against DNA damage by alkyl hydroperoxides. It can use either NADH or NADPH as electron donor for direct reduction of redox dyes or of alkyl hydroperoxides when combined with the AHPC protein. Pfam: Pyridine nucleotide-disulphide oxidareductase no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ahpF;product=alkyl hydroperoxide reductase subunit F;protein_id=CAL93387.1;transl_table=11
AM406670.1	EMBL	gene	824754	826058	.	-	.	ID=gene781;Name=azo0771;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0771
AM406670.1	EMBL	CDS	824754	826058	.	-	0	ID=cds769;Parent=gene781;Dbxref=EnsemblGenomes-Gn:azo0771,EnsemblGenomes-Tr:CAL93388,GOA:A1K3I3,InterPro:IPR001525,InterPro:IPR018117,InterPro:IPR029063,UniProtKB/TrEMBL:A1K3I3,NCBI_GP:CAL93388.1;Name=CAL93388.1;Note=Probable C-5 cytosine-specific DNA methylase InterPro: C-5 cytosine-specific DNA methylase;gbkey=CDS;product=probable C-5 cytosine-specific DNA methylase;protein_id=CAL93388.1;transl_table=11
AM406670.1	EMBL	gene	826594	827043	.	-	.	ID=gene782;Name=rnhA1;gbkey=Gene;gene=rnhA1;gene_biotype=protein_coding;locus_tag=azo0772
AM406670.1	EMBL	CDS	826594	827043	.	-	0	ID=cds770;Parent=gene782;Dbxref=EnsemblGenomes-Gn:azo0772,EnsemblGenomes-Tr:CAL93389,GOA:A1K3I4,InterPro:IPR002156,InterPro:IPR012337,InterPro:IPR022892,UniProtKB/TrEMBL:A1K3I4,NCBI_GP:CAL93389.1;Name=CAL93389.1;Note=Ribonuclease H (EC 3.1.26.4) (RNase H). This enzyme is an endonuclease that degrades the RNA of RNA-DNA hybrids specifically (By similarity). InterPro: RNase H%3B~High confidence in function and specificity;gbkey=CDS;gene=rnhA1;product=RnhA1 protein;protein_id=CAL93389.1;transl_table=11
AM406670.1	EMBL	gene	827040	827819	.	-	.	ID=gene783;Name=azo0773;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0773
AM406670.1	EMBL	CDS	827040	827819	.	-	0	ID=cds771;Parent=gene783;Dbxref=EnsemblGenomes-Gn:azo0773,EnsemblGenomes-Tr:CAL93390,InterPro:IPR013557,UniProtKB/TrEMBL:A1K3I5,NCBI_GP:CAL93390.1;Name=CAL93390.1;Note=Hypothetical protein %2C 32%25 identity to TrEMBL%3BQ8NZP4 No domains%2C repeats%2C motifs or features present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL93390.1;transl_table=11
AM406670.1	EMBL	gene	828127	828822	.	-	.	ID=gene784;Name=azo0774;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0774
AM406670.1	EMBL	CDS	828127	828822	.	-	0	ID=cds772;Parent=gene784;Dbxref=EnsemblGenomes-Gn:azo0774,EnsemblGenomes-Tr:CAL93391,UniProtKB/TrEMBL:A1K3I6,NCBI_GP:CAL93391.1;Name=CAL93391.1;gbkey=CDS;inference=nucleotide motif:Gismo;product=hypothetical protein;protein_id=CAL93391.1;transl_table=11
AM406670.1	EMBL	gene	829733	830302	.	-	.	ID=gene785;Name=azo0775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0775
AM406670.1	EMBL	CDS	829733	830302	.	-	0	ID=cds773;Parent=gene785;Dbxref=EnsemblGenomes-Gn:azo0775,EnsemblGenomes-Tr:CAL93392,GOA:A1K3I7,InterPro:IPR006118,InterPro:IPR006119,UniProtKB/TrEMBL:A1K3I7,NCBI_GP:CAL93392.1;Name=CAL93392.1;Note=Putative DNA-invertase from lambdoid prophage Rac. InterPro: Site-specific recombinase Pfam: Resolvase%3B~Family membership;gbkey=CDS;product=putative resolvase;protein_id=CAL93392.1;transl_table=11
AM406670.1	EMBL	gene	830685	832355	.	-	.	ID=gene786;Name=azo0776;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0776
AM406670.1	EMBL	CDS	830685	832355	.	-	0	ID=cds774;Parent=gene786;Dbxref=EnsemblGenomes-Gn:azo0776,EnsemblGenomes-Tr:CAL93393,GOA:A1K3I8,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,UniProtKB/TrEMBL:A1K3I8,NCBI_GP:CAL93393.1;Name=CAL93393.1;Note=Family membership;gbkey=CDS;product=putative integrase;protein_id=CAL93393.1;transl_table=11
AM406670.1	EMBL	gene	832451	832527	.	-	.	ID=gene787;Name=tRNA-Met;gbkey=Gene;gene=tRNA-Met;gene_biotype=tRNA;locus_tag=azo_tRNA_0009
AM406670.1	EMBL	tRNA	832451	832527	.	-	.	ID=rna12;Parent=gene787;anticodon=(pos:complement(832491..832493));gbkey=tRNA;gene=tRNA-Met;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Met
AM406670.1	EMBL	exon	832451	832527	.	-	.	ID=id13;Parent=rna12;anticodon=(pos:complement(832491..832493));gbkey=tRNA;gene=tRNA-Met;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Met
AM406670.1	EMBL	gene	832729	833076	.	+	.	ID=gene788;Name=azo0777;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0777
AM406670.1	EMBL	CDS	832729	833076	.	+	0	ID=cds775;Parent=gene788;Dbxref=EnsemblGenomes-Gn:azo0777,EnsemblGenomes-Tr:CAL93394,UniProtKB/TrEMBL:A1K3I9,NCBI_GP:CAL93394.1;Name=CAL93394.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93394.1;transl_table=11
AM406670.1	EMBL	gene	833091	834440	.	+	.	ID=gene789;Name=azo0778;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0778
AM406670.1	EMBL	CDS	833091	834440	.	+	0	ID=cds776;Parent=gene789;Dbxref=EnsemblGenomes-Gn:azo0778,EnsemblGenomes-Tr:CAL93395,GOA:A1K3J0,InterPro:IPR002792,InterPro:IPR005839,InterPro:IPR006463,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013848,InterPro:IPR020612,InterPro:IPR023404,InterPro:IPR023970,NCBI_GP:CAL93395.1;Name=CAL93395.1;Note=Conserved Hypothetical protein%2C 72%25 idetity (82%25 similarity) to TrEMBL%3BQ7NQI8.TrEMBL%3BQ8Y206(71%25 Identity). Has Elp3%2C Elongator protein 3%2C MiaB family%2C Radical SAM%3BThis superfamily contains MoaA%2C NifB%2C PqqE%2Ccoproporphyrinogen III oxidase%2C biotin synthase and MiaB families%2C and includes a representative in the eukaryotic elongator subunit%2C Elp-3. Some members of the family are methyltransferases.SMART%3BSM00729. Has PF01938%2C TRAM domain%3BIPR002792%3B This small domain has no known function. However it may perform a nucleic acid binding role. Has PF00919%3B Uncharacterized protein family UPF0004%3BIPR005839%3BThis family is the N terminal half of the Prosite family. The C-terminal half has been shown to be related to MiaB proteins. This domain is a nearly always found in conjunction with Radical_SAM and TRAM although its function is uncertain.%3B~Family membership;gbkey=CDS;product=Conserved Hypothetical protein;protein_id=CAL93395.1;transl_table=11
AM406670.1	EMBL	gene	834440	835423	.	+	.	ID=gene790;Name=ybeZ;gbkey=Gene;gene=ybeZ;gene_biotype=protein_coding;locus_tag=azo0779
AM406670.1	EMBL	CDS	834440	835423	.	+	0	ID=cds777;Parent=gene790;Dbxref=EnsemblGenomes-Gn:azo0779,EnsemblGenomes-Tr:CAL93396,GOA:A1K3J1,InterPro:IPR003714,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3J1,NCBI_GP:CAL93396.1;Name=CAL93396.1;Note=PhoH-like protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=ybeZ;product=PhoH-like protein;protein_id=CAL93396.1;transl_table=11
AM406670.1	EMBL	gene	835416	836174	.	+	.	ID=gene791;Name=azo0780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0780
AM406670.1	EMBL	CDS	835416	836174	.	+	0	ID=cds778;Parent=gene791;Dbxref=EnsemblGenomes-Gn:azo0780,EnsemblGenomes-Tr:CAL93397,GOA:A1K3J2,InterPro:IPR002036,InterPro:IPR023091,NCBI_GP:CAL93397.1;Name=CAL93397.1;Note=Conserved hypothetical protein. Homology to rso4939 of R. solanacearum of 40%25 (rso:RS04939). Pfam: Uncharacterized protein family UPF005 Tigrfam: TIGR00043: conserved hypothetical protein no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93397.1;transl_table=11
AM406670.1	EMBL	gene	836270	837115	.	+	.	ID=gene792;Name=corC;gbkey=Gene;gene=corC;gene_biotype=protein_coding;locus_tag=azo0781
AM406670.1	EMBL	CDS	836270	837115	.	+	0	ID=cds779;Parent=gene792;Dbxref=EnsemblGenomes-Gn:azo0781,EnsemblGenomes-Tr:CAL93398,GOA:A1K3J3,InterPro:IPR000644,InterPro:IPR005170,InterPro:IPR016166,InterPro:IPR016169,UniProtKB/TrEMBL:A1K3J3,NCBI_GP:CAL93398.1;Name=CAL93398.1;Note=Magnesium and cobalt efflux protein corC. Plays a role in the transport of magnesium and cobalt ions. Also mediates transport of cobalt and nickel. 43%25 CBS_domain.IPR005170%3B CorC_transpt-asc. Pfam:PF00571%3B CBS%3B 2.PF03471%3B CorC_HlyC%3B 1. Belongs to the UPF0053 family.Contains 2 cbs domains.%3B~High confidence in function and specificity;gbkey=CDS;gene=corC;product=putative magnesium and cobalt efflux protein;protein_id=CAL93398.1;transl_table=11
AM406670.1	EMBL	gene	837115	838629	.	+	.	ID=gene793;Name=lnt;gbkey=Gene;gene=lnt;gene_biotype=protein_coding;locus_tag=azo0782
AM406670.1	EMBL	CDS	837115	838629	.	+	0	ID=cds780;Parent=gene793;Dbxref=EnsemblGenomes-Gn:azo0782,EnsemblGenomes-Tr:CAL93399,GOA:A1K3J4,InterPro:IPR003010,InterPro:IPR004563,UniProtKB/TrEMBL:A1K3J4,NCBI_GP:CAL93399.1;Name=CAL93399.1;Note=Putative apolipoprotein N-acyltransferase. Homology to cutE of E. coli of 36%25 (sprot|LNT_ECOLI). Transfers the fatty acyl group on membrane lipoproteins. InterPro: Apolipoprotein N-acyltransferase (IPR004563)%3B Carbon-nitrogen hydrolase (IPR003010) Tigrfam: lnt: apolipoprotein N-acyltransferase Pfam: Carbon-nitrogen hydrolase signal peptide 6 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=lnt;product=putative apolipoprotein N-acyltransferase;protein_id=CAL93399.1;transl_table=11
AM406670.1	EMBL	gene	838754	839893	.	+	.	ID=gene794;Name=azo0783;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0783
AM406670.1	EMBL	CDS	838754	839893	.	+	0	ID=cds781;Parent=gene794;Dbxref=EnsemblGenomes-Gn:azo0783,EnsemblGenomes-Tr:CAL93400,GOA:A1K3J5,InterPro:IPR006143,InterPro:IPR006311,UniProtKB/TrEMBL:A1K3J5,NCBI_GP:CAL93400.1;Name=CAL93400.1;Note=HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C TREMBL:Q7NHP0 (27%25 identity)%3B SignalP predicting signal peptide. TC (8.A.1): The Membrane Fusion Protein (MFP) Family.%3B~Family membership;gbkey=CDS;product=membrane fusion protein;protein_id=CAL93400.1;transl_table=11
AM406670.1	EMBL	gene	839904	842957	.	+	.	ID=gene795;Name=azo0784;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0784
AM406670.1	EMBL	CDS	839904	842957	.	+	0	ID=cds782;Parent=gene795;Dbxref=EnsemblGenomes-Gn:azo0784,EnsemblGenomes-Tr:CAL93401,GOA:A1K3J6,InterPro:IPR001036,InterPro:IPR027463,UniProtKB/TrEMBL:A1K3J6,NCBI_GP:CAL93401.1;Name=CAL93401.1;Note=AcrB/AcrD/AcrF family protein. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q9A3K6 (38%25 identity)%3B TREMBL:Q89XF8 (40%25 identity). InterPro (IPR001036): Acriflavin resistance protein. Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TMHMM predicting 12 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear;gbkey=CDS;product=RND efflux transporter%2C permease protein;protein_id=CAL93401.1;transl_table=11
AM406670.1	EMBL	gene	843084	844010	.	+	.	ID=gene796;Name=azo0785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0785
AM406670.1	EMBL	CDS	843084	844010	.	+	0	ID=cds783;Parent=gene796;Dbxref=EnsemblGenomes-Gn:azo0785,EnsemblGenomes-Tr:CAL93402,GOA:A1K3J7,InterPro:IPR002310,InterPro:IPR006194,UniProtKB/TrEMBL:A1K3J7,NCBI_GP:CAL93402.1;Name=CAL93402.1;Note=Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) (Glycine--tRNA ligase alpha chain) (GlyRS).%3B~High confidence in function and specificity;gbkey=CDS;product=Glycyl-tRNA synthetase alpha chain;protein_id=CAL93402.1;transl_table=11
AM406670.1	EMBL	gene	844007	846094	.	+	.	ID=gene797;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=azo0786
AM406670.1	EMBL	CDS	844007	846094	.	+	0	ID=cds784;Parent=gene797;Dbxref=EnsemblGenomes-Gn:azo0786,EnsemblGenomes-Tr:CAL93403,GOA:A1K3J8,InterPro:IPR006194,InterPro:IPR008909,InterPro:IPR009080,InterPro:IPR015944,NCBI_GP:CAL93403.1;Name=CAL93403.1;Note=Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) (Glycine--tRNA ligase beta chain) (GlyRS).%3B~High confidence in function and specificity;gbkey=CDS;gene=glyS;product=Glycyl-tRNA synthetase%2C beta chain;protein_id=CAL93403.1;transl_table=11
AM406670.1	EMBL	gene	846144	846677	.	+	.	ID=gene798;Name=azo0787;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0787
AM406670.1	EMBL	CDS	846144	846677	.	+	0	ID=cds785;Parent=gene798;Dbxref=EnsemblGenomes-Gn:azo0787,EnsemblGenomes-Tr:CAL93404,GOA:A1K3J9,InterPro:IPR004446,InterPro:IPR006543,InterPro:IPR006549,InterPro:IPR023214,UniProtKB/TrEMBL:A1K3J9,NCBI_GP:CAL93404.1;Name=CAL93404.1;Note=Putative haloacid dehalogenase-like hydrolase%2C 60%25 Identity to TrEMBL%3BQ7W4K4%2CQ7WG29%2CQ7W0Q4. Has PF00702%2Chaloacid dehalogenase-like hydrolase%3B IPR005834 Dehal_like_hydro%3B This family are structurally different from the alpha/ beta hydrolase family (Abhydrolase_1). This family includes L-2-haloacid dehalogenase%2C epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle%2C which is the least well conserved region of the alignment%2C between residues 16 and 96 of P24069. The rest of the fold is composed of the core alpha/beta domain.;gbkey=CDS;product=putative haloacid dehalogenase-like hydrolase;protein_id=CAL93404.1;transl_table=11
AM406670.1	EMBL	gene	846695	847453	.	+	.	ID=gene799;Name=azo0788;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0788
AM406670.1	EMBL	CDS	846695	847453	.	+	0	ID=cds786;Parent=gene799;Dbxref=EnsemblGenomes-Gn:azo0788,EnsemblGenomes-Tr:CAL93405,GOA:A1K3K0,InterPro:IPR002123,UniProtKB/TrEMBL:A1K3K0,NCBI_GP:CAL93405.1;Name=CAL93405.1;Note=Acyl-[acyl-carrier protein] can also acts as acyl donor.The animal enzyme is specific for the transfer of unsaturated fatty acyl groups. Catalytic Activity:-Acyl-CoA + 1-acyl-sn-glycerol 3-phosphate %3D CoA + 1%2C2-diacyl-sn-glycerol 3-phosphate. Entry name TREMBL:Q82VB2 Prim. accession # Q82VB2 InterPro:-IPR002123%3B Acyltransferase. Pfam:- PF01553%3B Acyltransferase%3B 1. Identity:- 56%25 Prediction: Signal peptide Signal peptide probability: 0.907 Number of predicted TMHs: 1%3B~Family membership;gbkey=CDS;product=probable acyltransferase;protein_id=CAL93405.1;transl_table=11
AM406670.1	EMBL	gene	847542	848102	.	-	.	ID=gene800;Name=azo0789;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0789
AM406670.1	EMBL	CDS	847542	848102	.	-	0	ID=cds787;Parent=gene800;Dbxref=EnsemblGenomes-Gn:azo0789,EnsemblGenomes-Tr:CAL93406,InterPro:IPR010127,InterPro:IPR018968,UniProtKB/TrEMBL:A1K3K1,NCBI_GP:CAL93406.1;Name=CAL93406.1;Note=Probable phasin. Homology to p8 of Sphingomonas sp. A1 of 69%25 (gi|51773776|dbj|BAD38885.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.%3B~Family membership;gbkey=CDS;product=probable phasin;protein_id=CAL93406.1;transl_table=11
AM406670.1	EMBL	gene	848399	849175	.	-	.	ID=gene801;Name=paaF1;gbkey=Gene;gene=paaF1;gene_biotype=protein_coding;locus_tag=azo0790
AM406670.1	EMBL	CDS	848399	849175	.	-	0	ID=cds788;Parent=gene801;Dbxref=EnsemblGenomes-Gn:azo0790,EnsemblGenomes-Tr:CAL93407,GOA:A1K3K2,InterPro:IPR001753,InterPro:IPR018376,InterPro:IPR029045,UniProtKB/TrEMBL:A1K3K2,NCBI_GP:CAL93407.1;Name=CAL93407.1;Note=COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). CATALYTIC ACTIVITY: (3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H2O. Entry name :- SWISSPROT:PAAF_ECOLI Prim. accession # P76082 InterPro :- IPR001753%3B EnCoA_hydrtse. Pfam :- PF00378%3B ECH%3B 1. Identities %3D 109/250 (43%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=paaF1;product=probable enoyl-CoA hydratase;protein_id=CAL93407.1;transl_table=11
AM406670.1	EMBL	gene	849202	849774	.	-	.	ID=gene802;Name=azo0791;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0791
AM406670.1	EMBL	CDS	849202	849774	.	-	0	ID=cds789;Parent=gene802;Dbxref=EnsemblGenomes-Gn:azo0791,EnsemblGenomes-Tr:CAL93408,GOA:A1K3K3,InterPro:IPR005653,InterPro:IPR014340,UniProtKB/TrEMBL:A1K3K3,NCBI_GP:CAL93408.1;Name=CAL93408.1;Note=Conserved hypothetical secreted protein. Homology to rsc0410 of R. solanacearum of 42%25 (trembl|Q8Y2C6(SRS)) Pfam: OstA-like protein This family of proteins are mostly uncharacterised. However the family does include E. coli OstA P31554 that has been characterised as an organic solvent tolerance protein. signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93408.1;transl_table=11
AM406670.1	EMBL	gene	849771	850349	.	-	.	ID=gene803;Name=azo0792;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0792
AM406670.1	EMBL	CDS	849771	850349	.	-	0	ID=cds790;Parent=gene803;Dbxref=EnsemblGenomes-Gn:azo0792,EnsemblGenomes-Tr:CAL93409,InterPro:IPR010664,UniProtKB/TrEMBL:A1K3K4,NCBI_GP:CAL93409.1;Name=CAL93409.1;Note=Conserved hypothetical secreted protein. Homology to ebA1318 of Azoarcus sp. EbN1 of 47%25 (gnl|keqq|eba:ebA1318(KEGG)). Has PF06835%2C Protein of unknown function (DUF1239)%3BIPR010664%3BThis family consists of several hypothetical bacterial proteins of around 190 residues in length. The function of this family is unknown. No TMHs. Signal peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93409.1;transl_table=11
AM406670.1	EMBL	gene	850359	850880	.	-	.	ID=gene804;Name=azo0793;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0793
AM406670.1	EMBL	CDS	850359	850880	.	-	0	ID=cds791;Parent=gene804;Dbxref=EnsemblGenomes-Gn:azo0793,EnsemblGenomes-Tr:CAL93410,GOA:A1K3K5,InterPro:IPR010023,InterPro:IPR023214,UniProtKB/TrEMBL:A1K3K5,NCBI_GP:CAL93410.1;Name=CAL93410.1;Note=Catalyzes the hydrolysis of KDO 8-P to KDO and inorganic phosphate TREMBL:Q9JSU3: 43%25 identity%2C 59%25 similarity InterPro: IPR006549%3B HAD-SF-IIIA. IPR005834%3B Hydrolase. IPR008230%3B Sugar_Ptase. IPR010023%3B YrbI_phosphatas. Pfam: PF00702%3B Hydrolase TIGR00099: conserved hypothetical prote Absence of transmembrane helices.%3B~Specificity unclear;gbkey=CDS;product=probable phosphatase (HAD superfamily);protein_id=CAL93410.1;transl_table=11
AM406670.1	EMBL	gene	850880	851875	.	-	.	ID=gene805;Name=azo0794;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0794
AM406670.1	EMBL	CDS	850880	851875	.	-	0	ID=cds792;Parent=gene805;Dbxref=EnsemblGenomes-Gn:azo0794,EnsemblGenomes-Tr:CAL93411,GOA:A1K3K6,InterPro:IPR000644,InterPro:IPR001347,InterPro:IPR004800,UniProtKB/TrEMBL:A1K3K6,NCBI_GP:CAL93411.1;Name=CAL93411.1;Note=Arabinose 5-phosphate isomerase (EC 5.3.1.13). Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate (By similarity). InterPro: KpsF/GutQ family protein kpsF: KpsF/GutQ family protein%3B~High confidence in function and specificity;gbkey=CDS;product=sugar-phosphate isomerase;protein_id=CAL93411.1;transl_table=11
AM406670.1	EMBL	gene	852075	854042	.	+	.	ID=gene806;Name=azo0795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0795
AM406670.1	EMBL	CDS	852075	854042	.	+	0	ID=cds793;Parent=gene806;Dbxref=EnsemblGenomes-Gn:azo0795,EnsemblGenomes-Tr:CAL93412,GOA:A1K3K7,InterPro:IPR003148,InterPro:IPR004771,InterPro:IPR006037,InterPro:IPR006153,InterPro:IPR016040,UniProtKB/TrEMBL:A1K3K7,NCBI_GP:CAL93412.1;Name=CAL93412.1;Note=Probable glutathione-regulated potassium-efflux system protein (K(+)/H(+) antiporter). Transport system that facilitate potassium-efflux possibly by potassium-proton antiport. 50%25 Na_H_porter.IPR006037%3B TrkAC.IPR003148%3B TrkA_N. Pfam: PF00999%3B Na_H_Exchanger%3B 1.PF02080%3B TrkA_C%3B 1.PF02254%3B TrkA_N%3B 1. TMhelix: 11.%3B~High confidence in function and specificity;gbkey=CDS;product=putative glutathione-regulated potassium-efflux system protein;protein_id=CAL93412.1;transl_table=11
AM406670.1	EMBL	gene	854050	854697	.	-	.	ID=gene807;Name=azo0796;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0796
AM406670.1	EMBL	CDS	854050	854697	.	-	0	ID=cds794;Parent=gene807;Dbxref=EnsemblGenomes-Gn:azo0796,EnsemblGenomes-Tr:CAL93413,InterPro:IPR012902,UniProtKB/TrEMBL:A1K3K8,NCBI_GP:CAL93413.1;Name=CAL93413.1;Note=Conserved hypothetical membrabe protein. Homology to Mflag03002444 of Methylobacillus flagellatus of 48%25 (gi|46120631|ref|ZP_00201765.1|(NBCI ENTREZ)). no domains predicted. No signal peptide. 1 TMHs;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93413.1;transl_table=11
AM406670.1	EMBL	gene	854732	855430	.	-	.	ID=gene808;Name=azo0797;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0797
AM406670.1	EMBL	CDS	854732	855430	.	-	0	ID=cds795;Parent=gene808;Dbxref=EnsemblGenomes-Gn:azo0797,EnsemblGenomes-Tr:CAL93414,InterPro:IPR012902,UniProtKB/TrEMBL:A1K3K9,NCBI_GP:CAL93414.1;Name=CAL93414.1;Note=Conserved hypothetical secreted protein. Homology to Daro03002886 of Dechloromonas aromatica of 31%25 (gi|53729825|ref|ZP_00150246.2|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide.;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93414.1;transl_table=11
AM406670.1	EMBL	gene	855418	856656	.	-	.	ID=gene809;Name=azo0798;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0798
AM406670.1	EMBL	CDS	855418	856656	.	-	0	ID=cds796;Parent=gene809;Dbxref=EnsemblGenomes-Gn:azo0798,EnsemblGenomes-Tr:CAL93415,UniProtKB/TrEMBL:A1K3L0,NCBI_GP:CAL93415.1;Name=CAL93415.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93415.1;transl_table=11
AM406670.1	EMBL	gene	856671	857057	.	-	.	ID=gene810;Name=azo0799;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0799
AM406670.1	EMBL	CDS	856671	857057	.	-	0	ID=cds797;Parent=gene810;Dbxref=EnsemblGenomes-Gn:azo0799,EnsemblGenomes-Tr:CAL93416,UniProtKB/TrEMBL:A1K3L1,NCBI_GP:CAL93416.1;Name=CAL93416.1;Note=Hypothetical secreted protein. no homology with the data bank. no domains predicted. signal peptide. no TMHS;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93416.1;transl_table=11
AM406670.1	EMBL	gene	857054	857644	.	-	.	ID=gene811;Name=azo0800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0800
AM406670.1	EMBL	CDS	857054	857644	.	-	0	ID=cds798;Parent=gene811;Dbxref=EnsemblGenomes-Gn:azo0800,EnsemblGenomes-Tr:CAL93417,UniProtKB/TrEMBL:A1K3L2,NCBI_GP:CAL93417.1;Name=CAL93417.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93417.1;transl_table=11
AM406670.1	EMBL	gene	857641	859065	.	-	.	ID=gene812;Name=azo0801;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0801
AM406670.1	EMBL	CDS	857641	859065	.	-	0	ID=cds799;Parent=gene812;Dbxref=EnsemblGenomes-Gn:azo0801,EnsemblGenomes-Tr:CAL93418,UniProtKB/TrEMBL:A1K3L3,NCBI_GP:CAL93418.1;Name=CAL93418.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide present. 1 TMH present.;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93418.1;transl_table=11
AM406670.1	EMBL	gene	859072	860277	.	-	.	ID=gene813;Name=gspF1;gbkey=Gene;gene=gspF1;gene_biotype=protein_coding;locus_tag=azo0802
AM406670.1	EMBL	CDS	859072	860277	.	-	0	ID=cds800;Parent=gene813;Dbxref=EnsemblGenomes-Gn:azo0802,EnsemblGenomes-Tr:CAL93419,InterPro:IPR003004,InterPro:IPR018076,UniProtKB/TrEMBL:A1K3L4,NCBI_GP:CAL93419.1;Name=CAL93419.1;Note=Type II secretory pathway component F%2C%3B~Specificity unclear;gbkey=CDS;gene=gspF1;product=general secretion pathway protein F;protein_id=CAL93419.1;transl_table=11
AM406670.1	EMBL	gene	860274	861974	.	-	.	ID=gene814;Name=gspE1;gbkey=Gene;gene=gspE1;gene_biotype=protein_coding;locus_tag=azo0803
AM406670.1	EMBL	CDS	860274	861974	.	-	0	ID=cds801;Parent=gene814;Dbxref=EnsemblGenomes-Gn:azo0803,EnsemblGenomes-Tr:CAL93420,GOA:A1K3L5,InterPro:IPR001482,InterPro:IPR003593,InterPro:IPR007831,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3L5,NCBI_GP:CAL93420.1;Name=CAL93420.1;Note=Bacterial type II secretion system protein E%2C%3B~Specificity unclear;gbkey=CDS;gene=gspE1;product=general secretion pathway protein E;protein_id=CAL93420.1;transl_table=11
AM406670.1	EMBL	gene	861980	862615	.	-	.	ID=gene815;Name=azo0804;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0804
AM406670.1	EMBL	CDS	861980	862615	.	-	0	ID=cds802;Parent=gene815;Dbxref=EnsemblGenomes-Gn:azo0804,EnsemblGenomes-Tr:CAL93421,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR019734,UniProtKB/TrEMBL:A1K3L6,NCBI_GP:CAL93421.1;Name=CAL93421.1;Note=Hypothetical protein. No homology to a protein of similar size. No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=hypothetical protein;protein_id=CAL93421.1;transl_table=11
AM406670.1	EMBL	gene	862681	864423	.	-	.	ID=gene816;Name=gspD1;gbkey=Gene;gene=gspD1;gene_biotype=protein_coding;locus_tag=azo0805
AM406670.1	EMBL	CDS	862681	864423	.	-	0	ID=cds803;Parent=gene816;Dbxref=EnsemblGenomes-Gn:azo0805,EnsemblGenomes-Tr:CAL93422,GOA:A1K3L7,InterPro:IPR001775,InterPro:IPR004845,InterPro:IPR004846,InterPro:IPR011514,UniProtKB/TrEMBL:A1K3L7,NCBI_GP:CAL93422.1;Name=CAL93422.1;Note=Type II secretory pathway component D%2C weak similarity to SWISSPROT:HOFQ_ECOLI (18%25). A number of proteins are involved in the general secretion pathway (GSP)%3B one of these is known as protein D (GSPD protein). Protein D is involved in the type II general secretion pathway within Gram-negative bacteria%2C a signal sequence-dependent process responsible for protein export. InterPro (PF00263): General (type II) secretion pathway (GSP) D protein%3B~Specificity unclear;gbkey=CDS;gene=gspD1;product=general secretion pathway protein D;protein_id=CAL93422.1;transl_table=11
AM406670.1	EMBL	gene	864497	865330	.	+	.	ID=gene817;Name=azo0806;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0806
AM406670.1	EMBL	CDS	864497	865330	.	+	0	ID=cds804;Parent=gene817;Dbxref=EnsemblGenomes-Gn:azo0806,EnsemblGenomes-Tr:CAL93423,GOA:A1K3L8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3L8,NCBI_GP:CAL93423.1;Name=CAL93423.1;Note=Conserved hypothetical ABC transporter ATP-binding protein. Homology to rs01335 of R. solanacearum of 67%25 (trembl|Q8XV69). ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. They are minimally composed of four domains%2C with two transmembrane domains (TMDs) responsible for allocrite binding and transport and two nucleotide-binding domains (NBDs) responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Both NBDs are capable of ATP hydrolysis. Pfam: ABC transporter (PF00005). No signal peptide. No TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical ABC transporter ATP-binding protein;protein_id=CAL93423.1;transl_table=11
AM406670.1	EMBL	gene	865327	866118	.	+	.	ID=gene818;Name=azo0807;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0807
AM406670.1	EMBL	CDS	865327	866118	.	+	0	ID=cds805;Parent=gene818;Dbxref=EnsemblGenomes-Gn:azo0807,EnsemblGenomes-Tr:CAL93424,InterPro:IPR003453,UniProtKB/TrEMBL:A1K3L9,NCBI_GP:CAL93424.1;Name=CAL93424.1;Note=Conserved hypothetical membrane protein Similar to TREMBL:Q7P0W7 (65%25 identity)%3B TREMBL:Q82SF6 (65%25 identity)%3B TREMBL:Q7VSZ9 (57%25 identity). InterPro (IPR003453): Domain of unknown function DUF140. Pfam (PF02405): Domain of unknown function DUF140. TIGRFAM (TIGR00056): Conserved hypothetical protein. TMHMM reporting five transmembrane helices.;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93424.1;transl_table=11
AM406670.1	EMBL	gene	866118	866591	.	+	.	ID=gene819;Name=azo0808;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0808
AM406670.1	EMBL	CDS	866118	866591	.	+	0	ID=cds806;Parent=gene819;Dbxref=EnsemblGenomes-Gn:azo0808,EnsemblGenomes-Tr:CAL93425,InterPro:IPR003399,UniProtKB/TrEMBL:A1K3M0,NCBI_GP:CAL93425.1;Name=CAL93425.1;Note=Conserved hypothetical secreted protein. Similar to TREMBL:Q8XV71 (59%25 identity)%3B TREMBL:Q82SF7 (55%25 identity)%3B TREMBL:Q7VSZ8 (55%25 identity). Pfam (PF02470): mce related protein. This family of proteins contains the mce (mycobacterial cell entry) proteins from Mycobacterium tuberculosis. The archetype (Rv0169)%2C was isolated as being necessary for colonisation of%2C and survival within%2Cthe macrophage. This family contains proteins of unknown function from other bacteria. SignalP reoprting signal peptide. TMH in signal peptide%3B~Family membership;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93425.1;transl_table=11
AM406670.1	EMBL	gene	866632	867492	.	+	.	ID=gene820;Name=vacJ;gbkey=Gene;gene=vacJ;gene_biotype=protein_coding;locus_tag=azo0809
AM406670.1	EMBL	CDS	866632	867492	.	+	0	ID=cds807;Parent=gene820;Dbxref=EnsemblGenomes-Gn:azo0809,EnsemblGenomes-Tr:CAL93426,GOA:A1K3M1,InterPro:IPR007428,UniProtKB/TrEMBL:A1K3M1,NCBI_GP:CAL93426.1;Name=CAL93426.1;Note=Putative surface lipoprotein. Homology to vacJ of S. flexneri of 26%25 (sprot|VACJ_SHIFL) Required for intercellular spreading. Pfam: VacJ like lipoprotein signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=vacJ;product=putative surface lipoprotein;protein_id=CAL93426.1;transl_table=11
AM406670.1	EMBL	gene	867498	868145	.	+	.	ID=gene821;Name=azo0810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0810
AM406670.1	EMBL	CDS	867498	868145	.	+	0	ID=cds808;Parent=gene821;Dbxref=EnsemblGenomes-Gn:azo0810,EnsemblGenomes-Tr:CAL93427,InterPro:IPR008869,InterPro:IPR023094,UniProtKB/TrEMBL:A1K3M2,NCBI_GP:CAL93427.1;Name=CAL93427.1;Note=Conserved hypothetical secreted protein. Similar to TREMBL:Q82SF8 (54%25 identity)%3B TREMBL:Q8XV73 (42%25 identity)%3B TREMBL:Q7VSZ6 (40%25 identity). SignalP reporting signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93427.1;transl_table=11
AM406670.1	EMBL	gene	868216	868497	.	+	.	ID=gene822;Name=azo0811;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0811
AM406670.1	EMBL	CDS	868216	868497	.	+	0	ID=cds809;Parent=gene822;Dbxref=EnsemblGenomes-Gn:azo0811,EnsemblGenomes-Tr:CAL93428,InterPro:IPR002645,UniProtKB/TrEMBL:A1K3M3,NCBI_GP:CAL93428.1;Name=CAL93428.1;Note=Conserved hypothetical protein. Homology to rsc2957 of R. solanacearum of 42%25 (trembl|Q8XV74). Pfam: STAS domain The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93428.1;transl_table=11
AM406670.1	EMBL	gene	868505	869401	.	+	.	ID=gene823;Name=azo0812;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0812
AM406670.1	EMBL	CDS	868505	869401	.	+	0	ID=cds810;Parent=gene823;Dbxref=EnsemblGenomes-Gn:azo0812,EnsemblGenomes-Tr:CAL93429,GOA:A1K3M4,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3M4,NCBI_GP:CAL93429.1;Name=CAL93429.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q7P0X8 (62%25 identity)%3B TREMBL:Q82SG0 (58%25 identity). InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003439): ABC transporter. Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Family membership;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL93429.1;transl_table=11
AM406670.1	EMBL	gene	869394	870194	.	+	.	ID=gene824;Name=azo0813;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0813
AM406670.1	EMBL	CDS	869394	870194	.	+	0	ID=cds811;Parent=gene824;Dbxref=EnsemblGenomes-Gn:azo0813,EnsemblGenomes-Tr:CAL93430,GOA:A1K3M5,InterPro:IPR000412,InterPro:IPR013525,UniProtKB/TrEMBL:A1K3M5,NCBI_GP:CAL93430.1;Name=CAL93430.1;Note=Similar to TREMBL:Q8XV76 (69%25 identity)%3B TREMBL:Q7P0X7 (66%25 identity)%3B TREMBL:Q82SG1 (64%25 identity). InterPro (IPR000412): ABC transporter%2C family 2. Pfam (PF01061): ABC-2 type transporter. TMHMM reporting seven transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Specificity unclear;gbkey=CDS;product=ABC-2 type transporter permease protein;protein_id=CAL93430.1;transl_table=11
AM406670.1	EMBL	gene	870223	870480	.	+	.	ID=gene825;Name=azo0814;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0814
AM406670.1	EMBL	CDS	870223	870480	.	+	0	ID=cds812;Parent=gene825;Dbxref=EnsemblGenomes-Gn:azo0814,EnsemblGenomes-Tr:CAL93431,InterPro:IPR002634,UniProtKB/TrEMBL:A1K3M6,NCBI_GP:CAL93431.1;Name=CAL93431.1;Note=Conserved hypothetical BolA-like protein. Homology to ne2377 of N. europaea of 47%25 (trembl|Q82SG2). InterPro: BolA-like protein This family consist of the morphoprotein BolA from E. coli and its various homologues. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5. Pfam: BolA-like binding protein no signal peptide no TMHs%3B~Function unclear;gbkey=CDS;product=conserved hypothetical BolA-like protein;protein_id=CAL93431.1;transl_table=11
AM406670.1	EMBL	gene	870517	871767	.	+	.	ID=gene826;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;locus_tag=azo0815
AM406670.1	EMBL	CDS	870517	871767	.	+	0	ID=cds813;Parent=gene826;Dbxref=EnsemblGenomes-Gn:azo0815,EnsemblGenomes-Tr:CAL93432,GOA:A1K3M7,InterPro:IPR001986,InterPro:IPR005750,InterPro:IPR013792,UniProtKB/TrEMBL:A1K3M7,NCBI_GP:CAL93432.1;Name=CAL93432.1;Note=UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT). Cell wall formation. Adds enolpyruvyl to UDP-N-acetylglucosamine (By similarity). tim: triosephosphate isomerase%3B~High confidence in function and specificity;gbkey=CDS;gene=murA;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=CAL93432.1;transl_table=11
AM406670.1	EMBL	gene	871799	872206	.	-	.	ID=gene827;Name=rnk;gbkey=Gene;gene=rnk;gene_biotype=protein_coding;locus_tag=azo0816
AM406670.1	EMBL	CDS	871799	872206	.	-	0	ID=cds814;Parent=gene827;Dbxref=EnsemblGenomes-Gn:azo0816,EnsemblGenomes-Tr:CAL93433,GOA:A1K3M8,InterPro:IPR001437,InterPro:IPR023459,InterPro:IPR029462,UniProtKB/TrEMBL:A1K3M8,NCBI_GP:CAL93433.1;Name=CAL93433.1;Note=Regulator of nucleoside diphosphate kinase. RNK AND SSPA CAN FUNCTIONALLY REPLACE P.AERUGINOSA ALGINATE REGULATORY GENE ALGR2. 49%25 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=rnk;product=putative regulator of nucleoside diphosphate kinase;protein_id=CAL93433.1;transl_table=11
AM406670.1	EMBL	gene	872316	872990	.	+	.	ID=gene828;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=azo0817
AM406670.1	EMBL	CDS	872316	872990	.	+	0	ID=cds815;Parent=gene828;Dbxref=EnsemblGenomes-Gn:azo0817,EnsemblGenomes-Tr:CAL93434,GOA:A1K3M9,InterPro:IPR001348,InterPro:IPR013820,InterPro:IPR018198,InterPro:IPR024893,NCBI_GP:CAL93434.1;Name=CAL93434.1;Note=ATP phosphoribosyltransferase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=hisG;product=HisG protein;protein_id=CAL93434.1;transl_table=11
AM406670.1	EMBL	gene	872987	874297	.	+	.	ID=gene829;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=azo0818
AM406670.1	EMBL	CDS	872987	874297	.	+	0	ID=cds816;Parent=gene829;Dbxref=EnsemblGenomes-Gn:azo0818,EnsemblGenomes-Tr:CAL93435,GOA:A1K3N0,InterPro:IPR001692,InterPro:IPR012131,InterPro:IPR016161,InterPro:IPR022695,UniProtKB/TrEMBL:A1K3N0,NCBI_GP:CAL93435.1;Name=CAL93435.1;Note=Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria%2C fungi%2C and plants%2C the four-electron oxidation of L-histidinol to histidine. Similar to sprot|HISX_PSEAE (66%25) and to sprot|HISX_ECOLI (41%25). Pfam (PF00815): Histidinol dehydrogenase TIGRfam (TIGR00069): Histidinol dehydrogenase%3B~High confidence in function and specificity;gbkey=CDS;gene=hisD;product=HisD protein;protein_id=CAL93435.1;transl_table=11
AM406670.1	EMBL	gene	874352	875542	.	-	.	ID=gene830;Name=aspC;gbkey=Gene;gene=aspC;gene_biotype=protein_coding;locus_tag=azo0819
AM406670.1	EMBL	CDS	874352	875542	.	-	0	ID=cds817;Parent=gene830;Dbxref=EnsemblGenomes-Gn:azo0819,EnsemblGenomes-Tr:CAL93436,GOA:A1K3N1,InterPro:IPR004838,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K3N1,NCBI_GP:CAL93436.1;Name=CAL93436.1;Note=Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes%2Csuch as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity%2C these various enzymes can be grouped into subfamilies%3B these sequences are defined by the aminotransferases class-I pyridoxal-phosphate attachment site signature%2C which contains the lysine residue involved in pyridoxal-phosphate binding. Similar to pir|D83057 (55%25) and to trembl|Q8P544 (55%25). Pfam (PF00155): Aminotransferases class-I pyridoxal-phosphate-binding site HTH reporting nucleic acid binding motif.%3B~Specificity unclear;gbkey=CDS;gene=aspC;product=probable aminotransferase;protein_id=CAL93436.1;transl_table=11
AM406670.1	EMBL	gene	875655	877499	.	-	.	ID=gene831;Name=pckG;gbkey=Gene;gene=pckG;gene_biotype=protein_coding;locus_tag=azo0820
AM406670.1	EMBL	CDS	875655	877499	.	-	0	ID=cds818;Parent=gene831;Dbxref=EnsemblGenomes-Gn:azo0820,EnsemblGenomes-Tr:CAL93437,GOA:A1K3N2,InterPro:IPR008209,InterPro:IPR008210,InterPro:IPR013035,InterPro:IPR018091,UniProtKB/TrEMBL:A1K3N2,NCBI_GP:CAL93437.1;Name=CAL93437.1;Note=Probable phosphoenolpyruvate carboxykinase. Homology to pckG of M. smegmatis of 60%25 (sprot|PPCK_MYCSM). Phosphoenolpyruvate carboxykinase (GTP) (EC: 4.1.1.32) (PEPCK) [1] catalyzes the formation of phosphoenolpyruvate by decarboxylation of oxaloacetate while hydrolyzing GTP: GTP + oxaloacetate %3D GDP + phosphoenolpyruvate + CO2.This is a rate limiting step in gluconeogenesis (the biosynthesis of glucose). InterPro: Phosphoenolpyruvate carboxykinase (GTP)(IPR008209) Pfam: Phosphoenolpyruvate carboxykinase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=pckG;product=probable phosphoenolpyruvate carboxykinase;protein_id=CAL93437.1;transl_table=11
AM406670.1	EMBL	gene	877831	880107	.	+	.	ID=gene832;Name=maeB1;gbkey=Gene;gene=maeB1;gene_biotype=protein_coding;locus_tag=azo0821
AM406670.1	EMBL	CDS	877831	880107	.	+	0	ID=cds819;Parent=gene832;Dbxref=EnsemblGenomes-Gn:azo0821,EnsemblGenomes-Tr:CAL93438,GOA:A1K3N3,InterPro:IPR002505,InterPro:IPR012188,InterPro:IPR012301,InterPro:IPR012302,InterPro:IPR016040,UniProtKB/TrEMBL:A1K3N3,NCBI_GP:CAL93438.1;Name=CAL93438.1;Note=Probable malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) (EC 1.1.1.40) (NADP-ME). Homology to dme of S. meliloti of 60%25 (sprot|MAO1_RHIME). Required for symbiotic nitrogen fixation. Plays a key role in the conversion of malate to acetyl-CoA for efficient tricarboxylic acid cycle function in nitrogen-fixating bacteria. Tigrfam: pta: phosphotransacetylase Pfam: Malic enzyme%3B Phosphate acetyl/butaryltransferase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=maeB1;product=probable malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+);protein_id=CAL93438.1;transl_table=11
AM406670.1	EMBL	gene	880162	881298	.	+	.	ID=gene833;Name=azo0822;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0822
AM406670.1	EMBL	CDS	880162	881298	.	+	0	ID=cds820;Parent=gene833;Dbxref=EnsemblGenomes-Gn:azo0822,EnsemblGenomes-Tr:CAL93439,GOA:A1K3N4,InterPro:IPR002641,InterPro:IPR016035,UniProtKB/TrEMBL:A1K3N4,NCBI_GP:CAL93439.1;Name=CAL93439.1;Note=Probable Hypothetical UPF0028 family protein YML059C. TREMBL:Q82SM1: 50%25 identity%2C 68%25 similariry InterPro:IPR002641%3B Patatin. Pfam:PF01734%3B Patatin bioF: 8-amino-7-oxononanoate synthase Signal peptide present (SinalP predicted) TMHMM predicted TMH's%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93439.1;transl_table=11
AM406670.1	EMBL	gene	881699	882541	.	+	.	ID=gene834;Name=pbpG;gbkey=Gene;gene=pbpG;gene_biotype=protein_coding;locus_tag=azo0823
AM406670.1	EMBL	CDS	881699	882541	.	+	0	ID=cds821;Parent=gene834;Dbxref=EnsemblGenomes-Gn:azo0823,EnsemblGenomes-Tr:CAL93440,GOA:A1K3N5,InterPro:IPR001967,InterPro:IPR012338,InterPro:IPR018044,UniProtKB/TrEMBL:A1K3N5,NCBI_GP:CAL93440.1;Name=CAL93440.1;Note=Penicillin-binding protein 5 precursor (PBP-5) (D-alanyl-D-alanine- endopeptidase) (DD-endopeptidase).%3B~High confidence in function and specificity;gbkey=CDS;gene=pbpG;product=D-alanyl-D-alanine carboxypeptidase;protein_id=CAL93440.1;transl_table=11
AM406670.1	EMBL	gene	882604	883407	.	-	.	ID=gene835;Name=allR;gbkey=Gene;gene=allR;gene_biotype=protein_coding;locus_tag=azo0824
AM406670.1	EMBL	CDS	882604	883407	.	-	0	ID=cds822;Parent=gene835;Dbxref=EnsemblGenomes-Gn:azo0824,EnsemblGenomes-Tr:CAL93441,GOA:A1K3N6,InterPro:IPR005471,InterPro:IPR011991,InterPro:IPR014757,InterPro:IPR029016,UniProtKB/TrEMBL:A1K3N6,NCBI_GP:CAL93441.1;Name=CAL93441.1;Note=Probable negative regulator of allantoin and glyoxylate utilization operons%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=allR;product=probable negative regulator of allantoin and glyoxylate utilization operons;protein_id=CAL93441.1;transl_table=11
AM406670.1	EMBL	gene	883506	883727	.	+	.	ID=gene836;Name=azo0825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0825
AM406670.1	EMBL	CDS	883506	883727	.	+	0	ID=cds823;Parent=gene836;Dbxref=EnsemblGenomes-Gn:azo0825,EnsemblGenomes-Tr:CAL93442,UniProtKB/TrEMBL:A1K3N7,NCBI_GP:CAL93442.1;Name=CAL93442.1;Note=Hypothetical protein. No homology to the data bank. No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=hypothetical protein;protein_id=CAL93442.1;transl_table=11
AM406670.1	EMBL	gene	883724	884674	.	+	.	ID=gene837;Name=azo0826;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0826
AM406670.1	EMBL	CDS	883724	884674	.	+	0	ID=cds824;Parent=gene837;Dbxref=EnsemblGenomes-Gn:azo0826,EnsemblGenomes-Tr:CAL93443,GOA:A1K3N8,InterPro:IPR006139,InterPro:IPR006140,InterPro:IPR016040,InterPro:IPR029753,UniProtKB/TrEMBL:A1K3N8,NCBI_GP:CAL93443.1;Name=CAL93443.1;Note=Glycerate dehydrogenase (EC 1.1.1.29) (NADH-dependent hydroxypyruvate reductase) (HPR) (GDH) (Hydroxypyruvate dehydrogenase) (Glyoxylate reductase) (HPR-A). PLAYS A CENTRAL ROLE IN ASSIMILATION OF CARBON. IT CONVERTS HYDROXYPYRUVATE TO GLYCERATE AS A KEY STEP IN THE SERINE CYCLE AND MAY ALSO PLAY AN IMPORTANT ROLE IN C2 REACTIONS BY INTERCONVERTING GLYOXYLATE AND GLYCOLATE.%3B~Specificity unclear;gbkey=CDS;product=glycerate dehydrogenase;protein_id=CAL93443.1;transl_table=11
AM406670.1	EMBL	gene	884876	886135	.	+	.	ID=gene838;Name=azo0827;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0827
AM406670.1	EMBL	CDS	884876	886135	.	+	0	ID=cds825;Parent=gene838;Dbxref=EnsemblGenomes-Gn:azo0827,EnsemblGenomes-Tr:CAL93444,InterPro:IPR009978,UniProtKB/TrEMBL:A1K3N9,NCBI_GP:CAL93444.1;Name=CAL93444.1;Note=Conserved hypothetical membrane protein. Homology to ORF428 of Roseateles depolymerans of 64%25 (tremble:BAB1967) Has PF07399:(IPR009978)Protein of unknown function (DUF1504)%3B This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93444.1;transl_table=11
AM406670.1	EMBL	gene	886288	887790	.	+	.	ID=gene839;Name=azo0828;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0828
AM406670.1	EMBL	CDS	886288	887790	.	+	0	ID=cds826;Parent=gene839;Dbxref=EnsemblGenomes-Gn:azo0828,EnsemblGenomes-Tr:CAL93445,GOA:A1K3P0,InterPro:IPR000748,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR020103,UniProtKB/TrEMBL:A1K3P0,NCBI_GP:CAL93445.1;Name=CAL93445.1;Note=Putative RNA pseudouridylate synthase. Homology with hits in the database only for the first half of protein. Has PF00849%2C RNA pseudouridylate synthase%3B IPR006145%2C PseudoU_synth%3B Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes RluD P33643%2C a pseudouridylate synthase that converts specific uracils to pseudouridine in 23S rRNA. RluA from E. coli converts bases in both rRNA and tRNA. Has SMART%3BSM00363%2C S4 RNA-binding domain%3BIPR002942%3BThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4%2C eukaryotic ribosomal S9%2C two families of pseudouridine synthases%2C a novel family of predicted RNA methylases%2C a yeast protein containing a pseudouridine synthetase and a deaminase domain%2C bacterial tyrosyl-tRNA synthetases%2C and a number of uncharacterized%2C small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.%3B~Family membership;gbkey=CDS;product=pseudouridylate synthase;protein_id=CAL93445.1;transl_table=11
AM406670.1	EMBL	gene	887858	888337	.	-	.	ID=gene840;Name=nuoB1;gbkey=Gene;gene=nuoB1;gene_biotype=protein_coding;locus_tag=azo0829
AM406670.1	EMBL	CDS	887858	888337	.	-	0	ID=cds827;Parent=gene840;Dbxref=EnsemblGenomes-Gn:azo0829,EnsemblGenomes-Tr:CAL93446,GOA:A1K3P1,InterPro:IPR006137,InterPro:IPR006138,NCBI_GP:CAL93446.1;Name=CAL93446.1;Note=Conderved hypothetical NADH-quinone oxidoreductase chain B. Homology to nuoB of C. violaceum of 77%25 (trembl|Q7NUE5). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient (By similarity). Pfam: NADH ubiquinone oxidoreductase%2C 20 kd no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=nuoB1;product=conserved hypothetical NADH-quinone oxidoreductase chain B;protein_id=CAL93446.1;transl_table=11
AM406670.1	EMBL	gene	888370	889254	.	-	.	ID=gene841;Name=azo0830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0830
AM406670.1	EMBL	CDS	888370	889254	.	-	0	ID=cds828;Parent=gene841;Dbxref=EnsemblGenomes-Gn:azo0830,EnsemblGenomes-Tr:CAL93447,GOA:A1K3P2,InterPro:IPR018060,UniProtKB/TrEMBL:A1K3P2,NCBI_GP:CAL93447.1;Name=CAL93447.1;Note=Putative AraC-family transcriptional regulator%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative AraC-family transcriptional regulator;protein_id=CAL93447.1;transl_table=11
AM406670.1	EMBL	gene	889332	889562	.	-	.	ID=gene842;Name=azo0831;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0831
AM406670.1	EMBL	CDS	889332	889562	.	-	0	ID=cds829;Parent=gene842;Dbxref=EnsemblGenomes-Gn:azo0831,EnsemblGenomes-Tr:CAL93448,UniProtKB/TrEMBL:A1K3P3,NCBI_GP:CAL93448.1;Name=CAL93448.1;Note=Conserved hypothetical protein. Homology to Daro03000467 of Dechloromonas aromatica of 50%25 (gi|41725519|ref|ZP_00152277.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93448.1;transl_table=11
AM406670.1	EMBL	gene	890060	891259	.	-	.	ID=gene843;Name=azo0832;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0832
AM406670.1	EMBL	CDS	890060	891259	.	-	0	ID=cds830;Parent=gene843;Dbxref=EnsemblGenomes-Gn:azo0832,EnsemblGenomes-Tr:CAL93449,GOA:A1K3P4,InterPro:IPR003838,InterPro:IPR025857,UniProtKB/TrEMBL:A1K3P4,NCBI_GP:CAL93449.1;Name=CAL93449.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q8DJ46 (29%25 identity)%3B TREMBL:Q8YZK5 (29%25 identity). InterPro (IPR003838): Protein of unknown function DUF214. Pfam (DUF214): Predicted permease. TMHMM reporting four transmembrane helices. TC (3.A.1.122.): The Macrolide Exporter (MacB) Family.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease protein;protein_id=CAL93449.1;transl_table=11
AM406670.1	EMBL	gene	891269	892477	.	-	.	ID=gene844;Name=azo0833;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0833
AM406670.1	EMBL	CDS	891269	892477	.	-	0	ID=cds831;Parent=gene844;Dbxref=EnsemblGenomes-Gn:azo0833,EnsemblGenomes-Tr:CAL93450,GOA:A1K3P5,InterPro:IPR003838,InterPro:IPR025857,UniProtKB/TrEMBL:A1K3P5,NCBI_GP:CAL93450.1;Name=CAL93450.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q8YZK5 (28%25 identity)%3B TREMBL:Q8DJ46 (29%25 identity). Pfam (DUF214): Predicted permease. TMHMM reporting five transmembrane helices. TC (3.A.1.122.): The Macrolide Exporter (MacB) Family.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease protein;protein_id=CAL93450.1;transl_table=11
AM406670.1	EMBL	gene	892474	893181	.	-	.	ID=gene845;Name=azo0834;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0834
AM406670.1	EMBL	CDS	892474	893181	.	-	0	ID=cds832;Parent=gene845;Dbxref=EnsemblGenomes-Gn:azo0834,EnsemblGenomes-Tr:CAL93451,GOA:A1K3P6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3P6,NCBI_GP:CAL93451.1;Name=CAL93451.1;Note=Putative efflux transporter for macrolide antibiotics (MacB-family). Acts in conjunction with MacA. Similar to TREMBL:Q82W68 (59%25 identity)%3B TREMBL:Q8RAL4 (46%25 identity)%3B SWISSPROT:P75831 (41%25 identity). InterPro (IPR003593): AAA ATPase. InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). Pfam (PF00005): ABC transporter. TC (3.A.1.122): The Macrolide Exporter (MacB) Family.%3B~Family membership;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL93451.1;transl_table=11
AM406670.1	EMBL	gene	893195	894343	.	-	.	ID=gene846;Name=azo0835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0835
AM406670.1	EMBL	CDS	893195	894343	.	-	0	ID=cds833;Parent=gene846;Dbxref=EnsemblGenomes-Gn:azo0835,EnsemblGenomes-Tr:CAL93452,GOA:A1K3P7,InterPro:IPR006143,UniProtKB/TrEMBL:A1K3P7,NCBI_GP:CAL93452.1;Name=CAL93452.1;Note=The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C%3B~Family membership;gbkey=CDS;product=membrane fusion protein;protein_id=CAL93452.1;transl_table=11
AM406670.1	EMBL	gene	894555	896288	.	-	.	ID=gene847;Name=glnS;gbkey=Gene;gene=glnS;gene_biotype=protein_coding;locus_tag=azo0836
AM406670.1	EMBL	CDS	894555	896288	.	-	0	ID=cds834;Parent=gene847;Dbxref=EnsemblGenomes-Gn:azo0836,EnsemblGenomes-Tr:CAL93453,GOA:A1K3P8,InterPro:IPR000924,InterPro:IPR004514,InterPro:IPR011035,InterPro:IPR014729,InterPro:IPR020056,InterPro:IPR020058,InterPro:IPR020059,InterPro:IPR020061,InterPro:IPR022861,UniProtKB/TrEMBL:A1K3P8,NCBI_GP:CAL93453.1;Name=CAL93453.1;Note=Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA ligase) (GlnRS). glnS: glutaminyl-tRNA synthetase%3B~High confidence in function and specificity;gbkey=CDS;gene=glnS;product=glutaminyl-tRNA synthetase;protein_id=CAL93453.1;transl_table=11
AM406670.1	EMBL	gene	896453	896836	.	+	.	ID=gene848;Name=azo0837;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0837
AM406670.1	EMBL	CDS	896453	896836	.	+	0	ID=cds835;Parent=gene848;Dbxref=EnsemblGenomes-Gn:azo0837,EnsemblGenomes-Tr:CAL93454,GOA:A1K3P9,InterPro:IPR003691,UniProtKB/TrEMBL:A1K3P9,NCBI_GP:CAL93454.1;Name=CAL93454.1;Note=Conserved hypothetical crcB family protein. Homology to ebA4067 of Azoarcus sp. EbN1 of 65%25 (gnl|keqq|eba:ebA4067(KEGG)). InterPro: CRCB protein. CRCB is a putative integral membrane protein possibly involved in chromosome condensation. Over expression in E. Coli also leads to camphor resistance. signal peptide. 2 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical CrcB family protein;protein_id=CAL93454.1;transl_table=11
AM406670.1	EMBL	gene	896956	897630	.	+	.	ID=gene849;Name=azo0838;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0838
AM406670.1	EMBL	CDS	896956	897630	.	+	0	ID=cds836;Parent=gene849;Dbxref=EnsemblGenomes-Gn:azo0838,EnsemblGenomes-Tr:CAL93455,GOA:A1K3Q0,InterPro:IPR006664,InterPro:IPR006665,UniProtKB/TrEMBL:A1K3Q0,NCBI_GP:CAL93455.1;Name=CAL93455.1;Note=Conserved hypothetical puter membrane protein Homology to cv1891 of c. violaceum of 64%25 (trembl|Q7NWT8) InterPro: Bacterial outer membrane protein (IPR006664) Pfam: OmpA family signal peptide 2 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical outer membrane protein;protein_id=CAL93455.1;transl_table=11
AM406670.1	EMBL	gene	897685	900981	.	-	.	ID=gene850;Name=azo0839;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0839
AM406670.1	EMBL	CDS	897685	900981	.	-	0	ID=cds837;Parent=gene850;Dbxref=EnsemblGenomes-Gn:azo0839,EnsemblGenomes-Tr:CAL93456,GOA:A1K3Q1,InterPro:IPR000330,InterPro:IPR001650,InterPro:IPR007527,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3Q1,NCBI_GP:CAL93456.1;Name=CAL93456.1;Note=SWI/SNF family helicase Pfam: Helicase conserved C-terminal domain%3B~Specificity unclear;gbkey=CDS;product=SWI/SNF family helicase;protein_id=CAL93456.1;transl_table=11
AM406670.1	EMBL	gene	901163	903079	.	-	.	ID=gene851;Name=thiC;gbkey=Gene;gene=thiC;gene_biotype=protein_coding;locus_tag=azo0840
AM406670.1	EMBL	CDS	901163	903079	.	-	0	ID=cds838;Parent=gene851;Dbxref=EnsemblGenomes-Gn:azo0840,EnsemblGenomes-Tr:CAL93457,GOA:A1K3Q2,InterPro:IPR002817,InterPro:IPR025747,NCBI_GP:CAL93457.1;Name=CAL93457.1;Note=Thiamine biosynthesis protein thiC. Required for the synthesis of the hydromethylpyrimidine (HMP) moiety of thiamine (4-amino-2-methyl-5- hydroxymethylpyrimidine) (By similarity). TIGRFAM: thiC: thiamine biosynthesis protein ThiC%3B~High confidence in function and specificity;gbkey=CDS;gene=thiC;product=thiamine biosynthesis protein;protein_id=CAL93457.1;transl_table=11
AM406670.1	EMBL	gene	903169	904023	.	-	.	ID=gene852;Name=thiD1;gbkey=Gene;gene=thiD1;gene_biotype=protein_coding;locus_tag=azo0841
AM406670.1	EMBL	CDS	903169	904023	.	-	0	ID=cds839;Parent=gene852;Dbxref=EnsemblGenomes-Gn:azo0841,EnsemblGenomes-Tr:CAL93458,GOA:A1K3Q3,InterPro:IPR004399,InterPro:IPR013749,InterPro:IPR029056,UniProtKB/TrEMBL:A1K3Q3,NCBI_GP:CAL93458.1;Name=CAL93458.1;Note=Phosphomethylpyrimidine kinase (EC 2.7.4.7) (HMP-phosphate kinase) (HMP-P kinase). CATALYZES THE PHOSPHORYLATION OF HMP-P TO HMP-PP. TIGRFAM: HMP-P_kinase: phosphomethylpyrimidine kinase%3B~High confidence in function and specificity;gbkey=CDS;gene=thiD1;product=phosphomethylpyrimidine kinase;protein_id=CAL93458.1;transl_table=11
AM406670.1	EMBL	gene	904277	905893	.	+	.	ID=gene853;Name=ecaA;gbkey=Gene;gene=ecaA;gene_biotype=protein_coding;locus_tag=azo0842
AM406670.1	EMBL	CDS	904277	905893	.	+	0	ID=cds840;Parent=gene853;Dbxref=EnsemblGenomes-Gn:azo0842,EnsemblGenomes-Tr:CAL93459,GOA:A1K3Q4,InterPro:IPR001148,InterPro:IPR023561,UniProtKB/TrEMBL:A1K3Q4,NCBI_GP:CAL93459.1;Name=CAL93459.1;Note=Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase).Involved in the reversible hydration of carbon dioxide. 40%25 Euk_COanhd.IPR000437%3B Prok_lipoprot_S.IPR006311%3BTat. InterPro: belongs to the eukaryotic-type carbonic anhydrase family. Pfam:PF00194%3B carb_anhydrase%3B 1. TIGRFAMs:TIGR01409%3B TAT_signal_seq%3B 1. Signal peptide present.%3B~High confidence in function and specificity;gbkey=CDS;gene=ecaA;product=putative carbonic anhydrase precursor;protein_id=CAL93459.1;transl_table=11
AM406670.1	EMBL	gene	905906	907309	.	-	.	ID=gene854;Name=azo0843;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0843
AM406670.1	EMBL	CDS	905906	907309	.	-	0	ID=cds841;Parent=gene854;Dbxref=EnsemblGenomes-Gn:azo0843,EnsemblGenomes-Tr:CAL93460,GOA:A1K3Q5,InterPro:IPR000524,InterPro:IPR004839,InterPro:IPR011991,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K3Q5,NCBI_GP:CAL93460.1;Name=CAL93460.1;Note=Conserved hypothetical transcriptional regulator. Homology to rsc0989 of r. solanacearum of 47%25 (CAD14691). Pfam: Bacterial regulatory proteins%2C gntR family%3B Aminotransferase class I and II no signal peptide no TMHs bioF: 8-amino-7-oxononanoate synthase%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical transcriptional regulator;protein_id=CAL93460.1;transl_table=11
AM406670.1	EMBL	gene	907471	907926	.	+	.	ID=gene855;Name=azo0844;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0844
AM406670.1	EMBL	CDS	907471	907926	.	+	0	ID=cds842;Parent=gene855;Dbxref=EnsemblGenomes-Gn:azo0844,EnsemblGenomes-Tr:CAL93461,UniProtKB/TrEMBL:A1K3Q6,NCBI_GP:CAL93461.1;Name=CAL93461.1;Note=Hypothetical secreted protein. No homology to the data base. No domain predicted. No TMHs. Signal peptide.;gbkey=CDS;product=hypothetical secreted protein.;protein_id=CAL93461.1;transl_table=11
AM406670.1	EMBL	gene	908009	908686	.	+	.	ID=gene856;Name=azo0845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0845
AM406670.1	EMBL	CDS	908009	908686	.	+	0	ID=cds843;Parent=gene856;Dbxref=EnsemblGenomes-Gn:azo0845,EnsemblGenomes-Tr:CAL93462,GOA:A1K3Q7,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:A1K3Q7,NCBI_GP:CAL93462.1;Name=CAL93462.1;Note=Conserved hypothetical transcriptional regulator. Homology to RSc0698 of alstonia solanacearum of 48%25 (gnl|keqq|rso:RS01603(KEGG)). InterPro: IPR001647 HTH_TetR. Pfam: PF00440 Bacterial regulatory proteins%2CtetR family. HTH reporting nucleic acid binding motif. No signal peptide. No TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical transcriptional regulator;protein_id=CAL93462.1;transl_table=11
AM406670.1	EMBL	gene	908683	909771	.	+	.	ID=gene857;Name=azo0846;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0846
AM406670.1	EMBL	CDS	908683	909771	.	+	0	ID=cds844;Parent=gene857;Dbxref=EnsemblGenomes-Gn:azo0846,EnsemblGenomes-Tr:CAL93463,GOA:A1K3Q8,InterPro:IPR006143,UniProtKB/TrEMBL:A1K3Q8,NCBI_GP:CAL93463.1;Name=CAL93463.1;Note=Similar to TREMBL:Q7NR61 (35%25 identity)%3B TREMBL:Q8XYV3 (33%25 identity)%3B TREMBL:Q88MQ4 (32%25 identity). InterPro (IPR006143): Secretion protein HlyD. SignalP predicting signal peptide. TC (2.A.6.1): The Heavy Metal Efflux (HME) Family.%3B~Family membership;gbkey=CDS;product=membrane fusion protein;protein_id=CAL93463.1;transl_table=11
AM406670.1	EMBL	gene	909768	912986	.	+	.	ID=gene858;Name=azo0847;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0847
AM406670.1	EMBL	CDS	909768	912986	.	+	0	ID=cds845;Parent=gene858;Dbxref=EnsemblGenomes-Gn:azo0847,EnsemblGenomes-Tr:CAL93464,GOA:A1K3Q9,InterPro:IPR001036,InterPro:IPR027463,UniProtKB/TrEMBL:A1K3Q9,NCBI_GP:CAL93464.1;Name=CAL93464.1;Note=AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q9A7D5 (35%25 identity)%3B TREMBL:Q9HXW4 (55%25 identity). Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TMHMM predicting 12 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear;gbkey=CDS;product=RND efflux transporter%2C permease protein;protein_id=CAL93464.1;transl_table=11
AM406670.1	EMBL	gene	913062	913715	.	+	.	ID=gene859;Name=pcm1;gbkey=Gene;gene=pcm1;gene_biotype=protein_coding;locus_tag=azo0848
AM406670.1	EMBL	CDS	913062	913715	.	+	0	ID=cds846;Parent=gene859;Dbxref=EnsemblGenomes-Gn:azo0848,EnsemblGenomes-Tr:CAL93465,GOA:A1K3R0,InterPro:IPR000682,InterPro:IPR029063,UniProtKB/TrEMBL:A1K3R0,NCBI_GP:CAL93465.1;Name=CAL93465.1;Note=Putative protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins (By similarity). InterPro: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (IPR000682)%2C SAM binding motif (IPR000051) Tigrfam: pimt: protein-L-isoaspartate O-methyltransfase Pfam: Protein-L-isoaspartate (D-aspartate) O-methyltransferase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=pcm1;product=putative protein-L-isoaspartate O-methyltransferase;protein_id=CAL93465.1;transl_table=11
AM406670.1	EMBL	gene	913724	914047	.	+	.	ID=gene860;Name=azo0849;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0849
AM406670.1	EMBL	CDS	913724	914047	.	+	0	ID=cds847;Parent=gene860;Dbxref=EnsemblGenomes-Gn:azo0849,EnsemblGenomes-Tr:CAL93466,GOA:A1K3R1,InterPro:IPR001763,UniProtKB/TrEMBL:A1K3R1,NCBI_GP:CAL93466.1;Name=CAL93466.1;Note=Putative rhodanese-related sulfurtransferase. TIGR:NMB1884. InterPro:IPR001763%3B Rhodanese-like. InterPro: Rhodanese/cdc25 fold. Pfam:PF00581%3B Rhodanese%3B 1.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical sulfurtransferase protein;protein_id=CAL93466.1;transl_table=11
AM406670.1	EMBL	gene	914066	915382	.	+	.	ID=gene861;Name=tolC;gbkey=Gene;gene=tolC;gene_biotype=protein_coding;locus_tag=azo0850
AM406670.1	EMBL	CDS	914066	915382	.	+	0	ID=cds848;Parent=gene861;Dbxref=EnsemblGenomes-Gn:azo0850,EnsemblGenomes-Tr:CAL93467,GOA:A1K3R2,InterPro:IPR003423,InterPro:IPR010130,UniProtKB/TrEMBL:A1K3R2,NCBI_GP:CAL93467.1;Name=CAL93467.1;Note=Putative outer membrane effluxe protein protein. Homology to tolC from E. coli of 33%25. The OEP family (outer membreane effluxe protein) allow export of a variety of substrates in Gram negative bacteria. TolC is believed to be a membre af an ABC transporter system for protein secretion without cleavage of a signal sequence. Pfam: Outer membrane efflux protein Signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=tolC;product=putative outer membrane efflux protein;protein_id=CAL93467.1;transl_table=11
AM406670.1	EMBL	gene	915379	916623	.	-	.	ID=gene862;Name=waaA;gbkey=Gene;gene=waaA;gene_biotype=protein_coding;locus_tag=azo0851
AM406670.1	EMBL	CDS	915379	916623	.	-	0	ID=cds849;Parent=gene862;Dbxref=EnsemblGenomes-Gn:azo0851,EnsemblGenomes-Tr:CAL93468,GOA:A1K3R3,InterPro:IPR001296,InterPro:IPR007507,UniProtKB/TrEMBL:A1K3R3,NCBI_GP:CAL93468.1;Name=CAL93468.1;Note=3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) (KDO transferase). TRANSFERS THREE 3-DEOXY-D-MONO OCTULONIC ACID (KDO) INDIVIDUALLY FROM CMP-KDO TO A TETRAACYLDISACCHARIDE 14- BISPHOSPHATE PRECURSOR OF LIPID A (LIPID IVA). InterPro: Glycosyl transferases group 1 2A0115: benzoate transport%3B~High confidence in function and specificity;gbkey=CDS;gene=waaA;product=3-deoxy-D-manno-octulosonic-acid transferase;protein_id=CAL93468.1;transl_table=11
AM406670.1	EMBL	gene	916809	917816	.	+	.	ID=gene863;Name=wbnF;gbkey=Gene;gene=wbnF;gene_biotype=protein_coding;locus_tag=azo0852
AM406670.1	EMBL	CDS	916809	917816	.	+	0	ID=cds850;Parent=gene863;Dbxref=EnsemblGenomes-Gn:azo0852,EnsemblGenomes-Tr:CAL93469,GOA:A1K3R4,InterPro:IPR001509,InterPro:IPR008089,InterPro:IPR016040,UniProtKB/TrEMBL:A1K3R4,NCBI_GP:CAL93469.1;Name=CAL93469.1;Note=Probably involved in the biosynthesis of exopolysaccharides. 68%25 Epimerase_Dh.IPR008089%3B Nuc_sugar_epim. Pfam:PF01370%3B Epimerase%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=wbnF;product=putative nucleotide sugar epimerase;protein_id=CAL93469.1;transl_table=11
AM406670.1	EMBL	gene	917838	918635	.	+	.	ID=gene864;Name=apaH;gbkey=Gene;gene=apaH;gene_biotype=protein_coding;locus_tag=azo0853
AM406670.1	EMBL	CDS	917838	918635	.	+	0	ID=cds851;Parent=gene864;Dbxref=EnsemblGenomes-Gn:azo0853,EnsemblGenomes-Tr:CAL93470,GOA:A1K3R5,InterPro:IPR004617,InterPro:IPR004843,InterPro:IPR029052,UniProtKB/TrEMBL:A1K3R5,NCBI_GP:CAL93470.1;Name=CAL93470.1;Note=Bis(5-nucleosyl)-tetraphosphatase symmetrical (EC 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 55- P1P4-tetraphosphate pyrophosphohydrolase). Hydrolyzes diadenosine 55-P1P4-tetraphosphate to yield ADP (By similarity). Similar to TREMBL: trembl|Q7NQS0 InterPro:(IPR004617) ApaH.(IPR004843) M-ppestrase. Pfam (PF00149): Metallophos. TIGRFAM (TIGR00668): apaH. apaH: bis(5-nucleosyl)-tetraphosphata%3B~Family membership;gbkey=CDS;gene=apaH;product=bis(5'-nucleosyl)-tetraphosphatase (symmetrical);protein_id=CAL93470.1;transl_table=11
AM406670.1	EMBL	gene	918645	919436	.	-	.	ID=gene865;Name=plsC;gbkey=Gene;gene=plsC;gene_biotype=protein_coding;locus_tag=azo0854
AM406670.1	EMBL	CDS	918645	919436	.	-	0	ID=cds852;Parent=gene865;Dbxref=EnsemblGenomes-Gn:azo0854,EnsemblGenomes-Tr:CAL93471,GOA:A1K3R6,InterPro:IPR002123,UniProtKB/TrEMBL:A1K3R6,NCBI_GP:CAL93471.1;Name=CAL93471.1;Note=Function:-Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating acyl moiety at the 2 position (By similarity). CATALYTIC ACTIVITY: Acyl-CoA + 1-acyl-sn-glycerol 3-phosphate %3D CoA + 1%2C2-diacyl-sn-glycerol 3-phosphate. Entry name:- PLSC_NEIGO Primary accession number :- Q59601 InterPro IPR002123%3B Acyltransferase. IPR004552%3B AGP_acyltrn. Pfam PF01553%3B Acyltransferase%3B 1. Identities %3D 68/182 (37%25) Prediction: Non-secretory protein Signal peptide probability: 0.096 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=plsC;product=putative 1-acyl-sn-glycerol-3-phosphate acyltransferase;protein_id=CAL93471.1;transl_table=11
AM406670.1	EMBL	gene	919508	920266	.	-	.	ID=gene866;Name=azo0855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0855
AM406670.1	EMBL	CDS	919508	920266	.	-	0	ID=cds853;Parent=gene866;Dbxref=EnsemblGenomes-Gn:azo0855,EnsemblGenomes-Tr:CAL93472,InterPro:IPR016181,UniProtKB/TrEMBL:A1K3R7,NCBI_GP:CAL93472.1;Name=CAL93472.1;Note=Conserved hypothetical protein. Homology to cv0660 of C. violaceum of 59%25 (trembl|Q7P0A7) no domains predicted no singal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93472.1;transl_table=11
AM406670.1	EMBL	gene	920383	921654	.	+	.	ID=gene867;Name=azo0856;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0856
AM406670.1	EMBL	CDS	920383	921654	.	+	0	ID=cds854;Parent=gene867;Dbxref=EnsemblGenomes-Gn:azo0856,EnsemblGenomes-Tr:CAL93473,GOA:A1K3R8,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:A1K3R8,NCBI_GP:CAL93473.1;Name=CAL93473.1;Note=Similar to amylovoran biosynthesis glycosyl transferase amsK (EC 2.-.-.-). INVOLVED IN THE BIOSYNTHESIS OF AMYLOVORAN WHICH FUNCTIONS AS A VIRULENCE FACTOR. Similar to protein annotated as sulfolipid sulfoquinovosyldiacylglycerol biosynthesis proteins.%3B~Family membership;gbkey=CDS;product=glycosyltransferase;protein_id=CAL93473.1;transl_table=11
AM406670.1	EMBL	gene	921718	922653	.	+	.	ID=gene868;Name=azo0857;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0857
AM406670.1	EMBL	CDS	921718	922653	.	+	0	ID=cds855;Parent=gene868;Dbxref=EnsemblGenomes-Gn:azo0857,EnsemblGenomes-Tr:CAL93474,GOA:A1K3R9,InterPro:IPR002173,InterPro:IPR011611,InterPro:IPR029056,UniProtKB/TrEMBL:A1K3R9,NCBI_GP:CAL93474.1;Name=CAL93474.1;Note=38%25 PfkB.Family of carbohydrate kinases Pfam:PF00294%3B PfkB%3B 1.%3B~Specificity unclear;gbkey=CDS;product=putative carbohydrate kinase;protein_id=CAL93474.1;transl_table=11
AM406670.1	EMBL	gene	922647	923120	.	+	.	ID=gene869;Name=slyB;gbkey=Gene;gene=slyB;gene_biotype=protein_coding;locus_tag=azo0858
AM406670.1	EMBL	CDS	922647	923120	.	+	0	ID=cds856;Parent=gene869;Dbxref=EnsemblGenomes-Gn:azo0858,EnsemblGenomes-Tr:CAL93475,GOA:A1K3S0,InterPro:IPR008816,UniProtKB/TrEMBL:A1K3S0,NCBI_GP:CAL93475.1;Name=CAL93475.1;Note=Outer membrane lipoprotein SlyB. Homology to slyB of E. coli of 32%25 (sprot|SLYB_ECOLI) no domains predicted signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=slyB;product=putative outer membrane protein SlyB;protein_id=CAL93475.1;transl_table=11
AM406670.1	EMBL	gene	923122	923514	.	-	.	ID=gene870;Name=dgkA;gbkey=Gene;gene=dgkA;gene_biotype=protein_coding;locus_tag=azo0859
AM406670.1	EMBL	CDS	923122	923514	.	-	0	ID=cds857;Parent=gene870;Dbxref=EnsemblGenomes-Gn:azo0859,EnsemblGenomes-Tr:CAL93476,GOA:A1K3S1,InterPro:IPR000829,UniProtKB/TrEMBL:A1K3S1,NCBI_GP:CAL93476.1;Name=CAL93476.1;Note=Probable Diacylglycerol kinase. Homology to dgkA of E. coli of 40%25 (sprot|KDGL_ECOLI) RECYCLING OF DIACYLGLYCEROL PRODUCED DURING THE TURNOVER OF MEMBRANE PHOSPHOLIPID (BY SIMILARITY). Pfam: prokaryotic diacylglycerol kinase no signal peptide 2 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=dgkA;product=probable diacylglycerol kinase;protein_id=CAL93476.1;transl_table=11
AM406670.1	EMBL	gene	923623	924912	.	-	.	ID=gene871;Name=azo0860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0860
AM406670.1	EMBL	CDS	923623	924912	.	-	0	ID=cds858;Parent=gene871;Dbxref=EnsemblGenomes-Gn:azo0860,EnsemblGenomes-Tr:CAL93477,InterPro:IPR011723,InterPro:IPR021834,UniProtKB/TrEMBL:A1K3S2,NCBI_GP:CAL93477.1;Name=CAL93477.1;Note=Hypothetical protein. No Domains%2CFeatures%2CSignal Pepetide or TMH reported Present. Most top hits suggest the possibillity of Transmembrane protein%2C but due to non existance of any TMH's domains it cant be considered as a choice.%3B~Specificity unclear;gbkey=CDS;product=Hypothetical protein;protein_id=CAL93477.1;transl_table=11
AM406670.1	EMBL	gene	924919	925803	.	-	.	ID=gene872;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=azo0861
AM406670.1	EMBL	CDS	924919	925803	.	-	0	ID=cds859;Parent=gene872;Dbxref=EnsemblGenomes-Gn:azo0861,EnsemblGenomes-Tr:CAL93478,GOA:A1K3S3,InterPro:IPR004498,InterPro:IPR010456,InterPro:IPR029063,UniProtKB/TrEMBL:A1K3S3,NCBI_GP:CAL93478.1;Name=CAL93478.1;Note=Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11 Mtase). Methylates ribosomal protein L11%3B~High confidence in function and specificity;gbkey=CDS;gene=prmA;product=ribosomal protein L11 methyltransferase;protein_id=CAL93478.1;transl_table=11
AM406670.1	EMBL	gene	925814	927175	.	-	.	ID=gene873;Name=accC1;gbkey=Gene;gene=accC1;gene_biotype=protein_coding;locus_tag=azo0862
AM406670.1	EMBL	CDS	925814	927175	.	-	0	ID=cds860;Parent=gene873;Dbxref=EnsemblGenomes-Gn:azo0862,EnsemblGenomes-Tr:CAL93479,GOA:A1K3S4,InterPro:IPR004549,InterPro:IPR005479,InterPro:IPR005481,InterPro:IPR005482,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR011764,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,UniProtKB/TrEMBL:A1K3S4,NCBI_GP:CAL93479.1;Name=CAL93479.1;Note=Function:-THIS PROTEIN IS A COMPONENT OF THE ACETYL COENZYME A CARBOXYLASE COMPLEX%3B FIRST BIOTIN CARBOXYLASE CATALYZES THE CARBOXYLATION OF THE CARRIER PROTEIN AND THEN THE TRANSCARBOXYLASE TRANSFERS THE CARBOXYL GROUP TO FORM MALONYL-COA (BY SIMILARITY). Identities %3D 312/444 (70%25) InterPro IPR004549%3B AccC. IPR005482%3B Biotin_carb_C. IPR005479%3B CPase_L_D2. IPR005481%3B CPase_L_N. Pfam PF02785%3B Biotin_carb_C%3B 1. PF00289%3B CPSase_L_chain%3B 1. PF02786%3B CPSase_L_D2%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=accC1;product=probable biotin carboxylase (a subunit of acetyl-coa carboxylase);protein_id=CAL93479.1;transl_table=11
AM406670.1	EMBL	gene	927168	927296	.	-	.	ID=gene874;Name=azo0863;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0863
AM406670.1	EMBL	CDS	927168	927296	.	-	0	ID=cds861;Parent=gene874;Dbxref=EnsemblGenomes-Gn:azo0863,EnsemblGenomes-Tr:CAL93480,UniProtKB/TrEMBL:A1K3S5,NCBI_GP:CAL93480.1;Name=CAL93480.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL93480.1;transl_table=11
AM406670.1	EMBL	gene	927305	927757	.	-	.	ID=gene875;Name=accB;gbkey=Gene;gene=accB;gene_biotype=protein_coding;locus_tag=azo0864
AM406670.1	EMBL	CDS	927305	927757	.	-	0	ID=cds862;Parent=gene875;Dbxref=EnsemblGenomes-Gn:azo0864,EnsemblGenomes-Tr:CAL93481,GOA:A1K3S6,InterPro:IPR000089,InterPro:IPR001249,InterPro:IPR001882,InterPro:IPR011053,UniProtKB/TrEMBL:A1K3S6,NCBI_GP:CAL93481.1;Name=CAL93481.1;Note=Function:-Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP). THIS PROTEIN IS A COMPONENT OF THE ACETYL COENZYME A CARBOXYLASE COMPLEX%3B FIRST BIOTIN CARBOXYLASE CATALYZES THE CARBOXYLATION OF THE CARRIER PROTEIN AND THEN THE TRANSCARBOXYLASE TRANSFERS THE CARBOXYL GROUP TO FORM MALONYL-COA. Entry name:-SWISSPROT:BCCP_ECOLI Prim. accession # P02905 InterPro :-IPR001249%3B AcCoA_biotinCC. IPR001882%3B Biotin_BS. IPR000089%3B Biotin_lipoyl. Pfam:- PF00364%3B Biotin_lipoyl%3B 1. Number of predicted TMHs: 0 Identity:- 94/157 (59%25)%3B~High confidence in function and specificity;gbkey=CDS;gene=accB;product=probable biotin carboxyl carrier protein of acetyl-CoA carboxylase;protein_id=CAL93481.1;transl_table=11
AM406670.1	EMBL	gene	927813	928310	.	-	.	ID=gene876;Name=aroQ;gbkey=Gene;gene=aroQ;gene_biotype=protein_coding;locus_tag=azo0865
AM406670.1	EMBL	CDS	927813	928310	.	-	0	ID=cds863;Parent=gene876;Dbxref=EnsemblGenomes-Gn:azo0865,EnsemblGenomes-Tr:CAL93482,GOA:A1K3S7,InterPro:IPR001874,InterPro:IPR018509,UniProtKB/TrEMBL:A1K3S7,NCBI_GP:CAL93482.1;Name=CAL93482.1;Note=Probable 3-dehydroquinate dehydratase 1 (EC 4.2.1.10). Homology to aroQ of A. pleuropneumoniae of 58%25 (sprot|AROQ_ACTPL) Catalyzes a trans-dehydration via an enolate intermediate (By similarity). Pfam: Dihydroquinase II no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=aroQ;product=probable 3-dehydroquinate dehydratase;protein_id=CAL93482.1;transl_table=11
AM406670.1	EMBL	gene	928372	928908	.	-	.	ID=gene877;Name=azo0866;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0866
AM406670.1	EMBL	CDS	928372	928908	.	-	0	ID=cds864;Parent=gene877;Dbxref=EnsemblGenomes-Gn:azo0866,EnsemblGenomes-Tr:CAL93483,GOA:A1K3S8,InterPro:IPR000866,InterPro:IPR012336,InterPro:IPR017937,UniProtKB/TrEMBL:A1K3S8,NCBI_GP:CAL93483.1;Name=CAL93483.1;Note=Hypothetical thioredoxin. Homology with BPP3919 of B. parapertussis of 38%25. Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. Tigrfam: dsbE: periplasmic protein thiol:disulfi signal peptide probable 1 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical thioredoxin;protein_id=CAL93483.1;transl_table=11
AM406670.1	EMBL	gene	928905	929594	.	-	.	ID=gene878;Name=azo0867;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0867
AM406670.1	EMBL	CDS	928905	929594	.	-	0	ID=cds865;Parent=gene878;Dbxref=EnsemblGenomes-Gn:azo0867,EnsemblGenomes-Tr:CAL93484,UniProtKB/TrEMBL:A1K3S9,NCBI_GP:CAL93484.1;Name=CAL93484.1;Note=Conserved hypothetical protein%2C 39%25 identity to TrEMBL%3BQ8XVP7%3B Signal Peptide present. Coils2 program reporting presence of coiled coil. No TMH present. TIGR00004: endoribonuclease L-PSP putat;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93484.1;transl_table=11
AM406670.1	EMBL	gene	929650	930996	.	+	.	ID=gene879;Name=mpl;gbkey=Gene;gene=mpl;gene_biotype=protein_coding;locus_tag=azo0868
AM406670.1	EMBL	CDS	929650	930996	.	+	0	ID=cds866;Parent=gene879;Dbxref=EnsemblGenomes-Gn:azo0868,EnsemblGenomes-Tr:CAL93485,GOA:A1K3T0,InterPro:IPR000713,InterPro:IPR004101,InterPro:IPR005757,InterPro:IPR013221,InterPro:IPR016040,UniProtKB/TrEMBL:A1K3T0,NCBI_GP:CAL93485.1;Name=CAL93485.1;Note=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) (Murein peptide ligase). REUTILIZES THE INTACT TRIPEPTIDE L-ALANYL-GAMMA-D-GLUTAMYL-MESO-DIAMINOPIMELATE BY LINKING IT TO UDP-N-ACETYLMURAMIC ACID. InterPro: Cytoplasmic peptidoglycan synthetases N-terminal ispD: 4-diphosphocytidyl-2C-methyl-D-er%3B~High confidence in function and specificity;gbkey=CDS;gene=mpl;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase;protein_id=CAL93485.1;transl_table=11
AM406670.1	EMBL	gene	931018	931668	.	-	.	ID=gene880;Name=azo0869;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0869
AM406670.1	EMBL	CDS	931018	931668	.	-	0	ID=cds867;Parent=gene880;Dbxref=EnsemblGenomes-Gn:azo0869,EnsemblGenomes-Tr:CAL93486,InterPro:IPR007055,InterPro:IPR014004,UniProtKB/TrEMBL:A1K3T1,NCBI_GP:CAL93486.1;Name=CAL93486.1;Note=Conserved hypothetical secreted protein. Homology to rsc3264 of R. solanacearum (trembl|Q8XUC7). Smart: Bacterial OsmY and nodulation domain (BON) The BON domain is typically ~~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins%2C typically of the OsmY-type proteins%3B outside of this group the distribution is more disparate. signal peptide TMH in signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93486.1;transl_table=11
AM406670.1	EMBL	gene	931665	932258	.	-	.	ID=gene881;Name=gmhA;gbkey=Gene;gene=gmhA;gene_biotype=protein_coding;locus_tag=azo0870
AM406670.1	EMBL	CDS	931665	932258	.	-	0	ID=cds868;Parent=gene881;Dbxref=EnsemblGenomes-Gn:azo0870,EnsemblGenomes-Tr:CAL93487,GOA:A1K3T2,InterPro:IPR001347,InterPro:IPR004515,NCBI_GP:CAL93487.1;Name=CAL93487.1;Note=Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis%2C and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi. 54%25 GmhA.IPR001347%3B SIS. Pfam:PF01380%3B SIS%3B 1. TIGRFAMs:TIGR00441%3B gmhA%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=gmhA;product=putative phosphoheptose isomerase;protein_id=CAL93487.1;transl_table=11
AM406670.1	EMBL	gene	932374	932787	.	-	.	ID=gene882;Name=azo0871;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0871
AM406670.1	EMBL	CDS	932374	932787	.	-	0	ID=cds869;Parent=gene882;Dbxref=EnsemblGenomes-Gn:azo0871,EnsemblGenomes-Tr:CAL93488,GOA:A1K3T3,InterPro:IPR003509,InterPro:IPR011335,InterPro:IPR011856,NCBI_GP:CAL93488.1;Name=CAL93488.1;Note=Conserved hypothetical protein. Homology to pa4424 of P. aeruginosa of 44%25 (pir|H83091). Pfam: Uncharacterised protein family UPF0102 (PF02021). Interpro: Protein of unkown function UPF0102 (IPR003509). no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93488.1;transl_table=11
AM406670.1	EMBL	gene	932786	933673	.	+	.	ID=gene883;Name=azo0872;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0872
AM406670.1	EMBL	CDS	932786	933673	.	+	0	ID=cds870;Parent=gene883;Dbxref=EnsemblGenomes-Gn:azo0872,EnsemblGenomes-Tr:CAL93489,GOA:A1K3T4,InterPro:IPR000878,InterPro:IPR008189,InterPro:IPR014776,InterPro:IPR014777,UniProtKB/TrEMBL:A1K3T4,NCBI_GP:CAL93489.1;Name=CAL93489.1;Note=Conserved hypothetical protein. Homology to pp1326 of P. putida of 56%25 ((AAN66950). InterPro: Uncharacterized protein family UPF0011 (IPR008189) TIGR00096: conserved hypothetical protein Pfam: Tetropyrrole (Crrin/Porphyrin) methyltransferase no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93489.1;transl_table=11
AM406670.1	EMBL	gene	933728	934762	.	+	.	ID=gene884;Name=pyrC;gbkey=Gene;gene=pyrC;gene_biotype=protein_coding;locus_tag=azo0873
AM406670.1	EMBL	CDS	933728	934762	.	+	0	ID=cds871;Parent=gene884;Dbxref=EnsemblGenomes-Gn:azo0873,EnsemblGenomes-Tr:CAL93490,GOA:A1K3T5,InterPro:IPR002195,InterPro:IPR004721,InterPro:IPR006680,NCBI_GP:CAL93490.1;Name=CAL93490.1;Note=Probable dihydroorotase (EC 3.5.2.3) (DHOase). Homology to pyrC of E. coli of 57%25 (sprot|PYRC_ECOLI(SRS)) Is involeved in the pyrimidine biosynthesis. CATALYTIC ACTIVITY: (S)-dihydroorotate + H(2)O %3D N-carbamoyl-L-aspartate. Needs 2 zinc ions per subunit. InterPro: Dihydroorotase homodimeric type (IPR004721)%3B Dihydroorotase (IPR002195) Tigrfam: pyrC_dimer: dihydroorotase homodimeric type no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=pyrC;product=probable dihydroorotase;protein_id=CAL93490.1;transl_table=11
AM406670.1	EMBL	gene	934759	935190	.	+	.	ID=gene885;Name=azo0874;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0874
AM406670.1	EMBL	CDS	934759	935190	.	+	0	ID=cds872;Parent=gene885;Dbxref=EnsemblGenomes-Gn:azo0874,EnsemblGenomes-Tr:CAL93491,UniProtKB/TrEMBL:A1K3T6,NCBI_GP:CAL93491.1;Name=CAL93491.1;Note=Conserved hypothetical secreted protein. Homology to Daro03003273 of Dechloromonas aromatica of 35%25 (gi|41723286|ref|ZP_00150229.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93491.1;transl_table=11
AM406670.1	EMBL	gene	935993	936436	.	+	.	ID=gene886;Name=mraZ;gbkey=Gene;gene=mraZ;gene_biotype=protein_coding;locus_tag=azo0875
AM406670.1	EMBL	CDS	935993	936436	.	+	0	ID=cds873;Parent=gene886;Dbxref=EnsemblGenomes-Gn:azo0875,EnsemblGenomes-Tr:CAL93492,GOA:A1K3T7,InterPro:IPR003444,InterPro:IPR020603,NCBI_GP:CAL93492.1;Name=CAL93492.1;Note=Protein mraZ.%3B~High confidence in function and specificity;gbkey=CDS;gene=mraZ;product=protein mraZ;protein_id=CAL93492.1;transl_table=11
AM406670.1	EMBL	gene	936433	937371	.	+	.	ID=gene887;Name=mraW;gbkey=Gene;gene=mraW;gene_biotype=protein_coding;locus_tag=azo0876
AM406670.1	EMBL	CDS	936433	937371	.	+	0	ID=cds874;Parent=gene887;Dbxref=EnsemblGenomes-Gn:azo0876,EnsemblGenomes-Tr:CAL93493,GOA:A1K3T8,InterPro:IPR002903,InterPro:IPR023397,InterPro:IPR029063,NCBI_GP:CAL93493.1;Name=CAL93493.1;Note=S-adenosyl-methyltransferase mraW (EC 2.1.1.-). Exhibits a S-adenosyl-dependent methyltransferase activity (By similarity). TIGR00006: conserved hypothetical prote%3B~High confidence in function and specificity;gbkey=CDS;gene=mraW;product=SAM dependent methyltransferase;protein_id=CAL93493.1;transl_table=11
AM406670.1	EMBL	gene	937368	937631	.	+	.	ID=gene888;Name=FtsL;gbkey=Gene;gene=FtsL;gene_biotype=protein_coding;locus_tag=azo0877
AM406670.1	EMBL	CDS	937368	937631	.	+	0	ID=cds875;Parent=gene888;Dbxref=EnsemblGenomes-Gn:azo0877,EnsemblGenomes-Tr:CAL93494,GOA:A1K3T9,InterPro:IPR011922,UniProtKB/TrEMBL:A1K3T9,NCBI_GP:CAL93494.1;Name=CAL93494.1;Note=Putative cell division protein FtsL. Homology to ftsL of E. coli of 32%25 (sprot|FTSL_ECOLI). Protein involved in cell division and cell growth. May play some role in coupling cell division and peptidoglycan physiology. Pfam: Cell division protein FtsL signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=FtsL;product=putative cell division protein FtsL;protein_id=CAL93494.1;transl_table=11
AM406670.1	EMBL	gene	937628	939388	.	+	.	ID=gene889;Name=FtsI;gbkey=Gene;gene=FtsI;gene_biotype=protein_coding;locus_tag=azo0878
AM406670.1	EMBL	CDS	937628	939388	.	+	0	ID=cds876;Parent=gene889;Dbxref=EnsemblGenomes-Gn:azo0878,EnsemblGenomes-Tr:CAL93495,GOA:A1K3U0,InterPro:IPR001460,InterPro:IPR005311,InterPro:IPR012338,UniProtKB/TrEMBL:A1K3U0,NCBI_GP:CAL93495.1;Name=CAL93495.1;Note=Probable peptidoglycan glycosyltransferase. Homology to ftsI of E. coli of 43%25 (sprot|FTSI_ECOLI) Cell wall formation. Essential for the formation of a septum of the murein sacculus. Synthesis of cross-linked peptidoglycan from the lipid intermediates. InterPro: Penicillin binding protein transpeptidase domain (IPR001460) Pfam: Penicillin-binding protein dimerisation domain%3B Penicillin binding proetin transpeptidas domain signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=FtsI;product=probable peptidoglycan glycosyltransferase;protein_id=CAL93495.1;transl_table=11
AM406670.1	EMBL	gene	939385	940890	.	+	.	ID=gene890;Name=murE;gbkey=Gene;gene=murE;gene_biotype=protein_coding;locus_tag=azo0879
AM406670.1	EMBL	CDS	939385	940890	.	+	0	ID=cds877;Parent=gene890;Dbxref=EnsemblGenomes-Gn:azo0879,EnsemblGenomes-Tr:CAL93496,GOA:A1K3U1,InterPro:IPR000713,InterPro:IPR004101,InterPro:IPR005761,InterPro:IPR013221,UniProtKB/TrEMBL:A1K3U1,NCBI_GP:CAL93496.1;Name=CAL93496.1;Note=Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-diaminopimelate ligase Homology to murE of E. coli of 40%25 (sprot|MURE_ECOLI) Cell wall formation. Diaminopimelic acid adding enzyme (By similarity). Pfam: Mur ligase family%2C catalytic domain%3B Mur ligase family%2C glutamate ligase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=murE;product=probable UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-diaminopimelate ligase;protein_id=CAL93496.1;transl_table=11
AM406670.1	EMBL	gene	940863	942299	.	+	.	ID=gene891;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=azo0880
AM406670.1	EMBL	CDS	940863	942299	.	+	0	ID=cds878;Parent=gene891;Dbxref=EnsemblGenomes-Gn:azo0880,EnsemblGenomes-Tr:CAL93497,GOA:A1K3U2,InterPro:IPR000713,InterPro:IPR004101,InterPro:IPR005863,InterPro:IPR013221,UniProtKB/TrEMBL:A1K3U2,NCBI_GP:CAL93497.1;Name=CAL93497.1;Note=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D- alanine-adding enzyme). Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide the precursor of murein (By similarity). InterPro: Cytoplasmic peptidoglycan synthetases N-terminal mobB: molybdopterin-guanine dinucleot%3B~High confidence in function and specificity;gbkey=CDS;gene=murF;product=UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C 6-diaminopimelate-D-alanyl-D-alanine ligase;protein_id=CAL93497.1;transl_table=11
AM406670.1	EMBL	gene	942301	943389	.	+	.	ID=gene892;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=azo0881
AM406670.1	EMBL	CDS	942301	943389	.	+	0	ID=cds879;Parent=gene892;Dbxref=EnsemblGenomes-Gn:azo0881,EnsemblGenomes-Tr:CAL93498,GOA:A1K3U3,InterPro:IPR000715,InterPro:IPR003524,InterPro:IPR018480,NCBI_GP:CAL93498.1;Name=CAL93498.1;Note=Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) (UDP- MurNAc-pentapeptide phosphotransferase). First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (By similarity). mraY: phospho-N-acetylmuramoyl-pentape%3B~High confidence in function and specificity;gbkey=CDS;gene=mraY;product=phospho-N-acetylmuramoyl-pentapeptide transferase;protein_id=CAL93498.1;transl_table=11
AM406670.1	EMBL	gene	943386	944804	.	+	.	ID=gene893;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=azo0882
AM406670.1	EMBL	CDS	943386	944804	.	+	0	ID=cds880;Parent=gene893;Dbxref=EnsemblGenomes-Gn:azo0882,EnsemblGenomes-Tr:CAL93499,GOA:A1K3U4,InterPro:IPR004101,InterPro:IPR005762,InterPro:IPR013221,InterPro:IPR016040,UniProtKB/TrEMBL:A1K3U4,NCBI_GP:CAL93499.1;Name=CAL93499.1;Note=Probable UDP-N-acetylmuramoylalanine-D-glutamate ligase. Homology to murD of P. aeruginosa of 45%25 (Sprot:MURD_PSEAE) Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) (By similarity). InterPro: Cytoplasmic peptidoglycan synthetases N-terminal (IPR000713)%3B Cytoplasmic peptidoglycan synthetases C-terminal (IPR004101) Pfam: Mur ligase family%2C catalytic domain%3B Mur ligase family%2C glutamate ligase domain no signal peptide no TMHs rpiB: ribose 5-phosphate isomerase B%3B~High confidence in function and specificity;gbkey=CDS;gene=murD;product=probable UDP-N-acetylmuramoylalanine-D-glutamate ligase;protein_id=CAL93499.1;transl_table=11
AM406670.1	EMBL	gene	944801	946033	.	+	.	ID=gene894;Name=FtsW;gbkey=Gene;gene=FtsW;gene_biotype=protein_coding;locus_tag=azo0883
AM406670.1	EMBL	CDS	944801	946033	.	+	0	ID=cds881;Parent=gene894;Dbxref=EnsemblGenomes-Gn:azo0883,EnsemblGenomes-Tr:CAL93500,GOA:A1K3U5,InterPro:IPR001182,InterPro:IPR013437,UniProtKB/TrEMBL:A1K3U5,NCBI_GP:CAL93500.1;Name=CAL93500.1;Note=This is a septum-peptidoglycan biosynthetic protein involved in cell wall formation. Plays a role in the stabilization of the ftsZ ring during cell division.%3B~High confidence in function and specificity;gbkey=CDS;gene=FtsW;product=cell division protein FtsW;protein_id=CAL93500.1;transl_table=11
AM406670.1	EMBL	gene	946030	947100	.	+	.	ID=gene895;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=azo0884
AM406670.1	EMBL	CDS	946030	947100	.	+	0	ID=cds882;Parent=gene895;Dbxref=EnsemblGenomes-Gn:azo0884,EnsemblGenomes-Tr:CAL93501,GOA:A1K3U6,InterPro:IPR004276,InterPro:IPR006009,InterPro:IPR007235,NCBI_GP:CAL93501.1;Name=CAL93501.1;Note=Probable undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. Homology to murG of e. coli of 47%25 (Sprote:MURG_ECOLI) Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc-(pentapeptide)GlcNAc (lipid intermediate II) (By similarity). InterPro: Glycosyltransferase family 28 (IPR004276) Pfam: Glycosyltransferase family singal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=murG;product=probable undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase;protein_id=CAL93501.1;transl_table=11
AM406670.1	EMBL	gene	947097	948500	.	+	.	ID=gene896;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=azo0885
AM406670.1	EMBL	CDS	947097	948500	.	+	0	ID=cds883;Parent=gene896;Dbxref=EnsemblGenomes-Gn:azo0885,EnsemblGenomes-Tr:CAL93502,GOA:A1K3U7,InterPro:IPR000713,InterPro:IPR004101,InterPro:IPR005758,InterPro:IPR013221,InterPro:IPR016040,NCBI_GP:CAL93502.1;Name=CAL93502.1;Note=Probable UDP-N-acetylmuramate-L-alanine ligase. Homology to murC of P. aeruginosa of 58%25 (sprot:MURC_PSEAE) Cell wall formation. Pfam: Mur ligase family%2C catalytic domain%3B Mur ligase family%2C glutamate ligase domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=murC;product=probable UDP-N-acetylmuramate-L-alanine ligase;protein_id=CAL93502.1;transl_table=11
AM406670.1	EMBL	gene	948497	949411	.	+	.	ID=gene897;Name=ddlB;gbkey=Gene;gene=ddlB;gene_biotype=protein_coding;locus_tag=azo0886
AM406670.1	EMBL	CDS	948497	949411	.	+	0	ID=cds884;Parent=gene897;Dbxref=EnsemblGenomes-Gn:azo0886,EnsemblGenomes-Tr:CAL93503,GOA:A1K3U8,InterPro:IPR000291,InterPro:IPR005905,InterPro:IPR011095,InterPro:IPR011127,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,NCBI_GP:CAL93503.1;Name=CAL93503.1;Note=Probable D-alanine-D-alanine ligase. Homology to ddlB of E. coli of 54%25 (sprot|DDLB_ECOLI) Cell wall formation (By similarity). InterPro: D-alanine--D-alanine ligase (IPR005905) Pfam: D_ala D_ala liganse signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ddlB;product=probable D-alanine-D-alanine ligase;protein_id=CAL93503.1;transl_table=11
AM406670.1	EMBL	gene	949404	950234	.	+	.	ID=gene898;Name=FtsQ;gbkey=Gene;gene=FtsQ;gene_biotype=protein_coding;locus_tag=azo0887
AM406670.1	EMBL	CDS	949404	950234	.	+	0	ID=cds885;Parent=gene898;Dbxref=EnsemblGenomes-Gn:azo0887,EnsemblGenomes-Tr:CAL93504,GOA:A1K3U9,InterPro:IPR005548,InterPro:IPR013685,InterPro:IPR026579,UniProtKB/TrEMBL:A1K3U9,NCBI_GP:CAL93504.1;Name=CAL93504.1;Note=Putative cell division protein FtsQ. Homology to ftsQ of E. coli of 23%25 (Sprot:FTSQ_ECOLI) This protein may be involved in septum formation. Pfam: Cell division protein FtsQ no signal peptide 1 TMHs%3B~Family membership;gbkey=CDS;gene=FtsQ;product=putative cell division protein FtsQ;protein_id=CAL93504.1;transl_table=11
AM406670.1	EMBL	gene	950231	951460	.	+	.	ID=gene899;Name=FtsA;gbkey=Gene;gene=FtsA;gene_biotype=protein_coding;locus_tag=azo0888
AM406670.1	EMBL	CDS	950231	951460	.	+	0	ID=cds886;Parent=gene899;Dbxref=EnsemblGenomes-Gn:azo0888,EnsemblGenomes-Tr:CAL93505,GOA:A1K3V0,InterPro:IPR003494,InterPro:IPR020823,UniProtKB/TrEMBL:A1K3V0,NCBI_GP:CAL93505.1;Name=CAL93505.1;Note=This protein may be involved in anomalous filament growth. May be a component of the septum. It may interact with ftsZ. InterPro: Cell division protein FtsA%3B~High confidence in function and specificity;gbkey=CDS;gene=FtsA;product=cell division protein FtsA;protein_id=CAL93505.1;transl_table=11
AM406670.1	EMBL	gene	951602	952744	.	+	.	ID=gene900;Name=FtsZ;gbkey=Gene;gene=FtsZ;gene_biotype=protein_coding;locus_tag=azo0889
AM406670.1	EMBL	CDS	951602	952744	.	+	0	ID=cds887;Parent=gene900;Dbxref=EnsemblGenomes-Gn:azo0889,EnsemblGenomes-Tr:CAL93506,GOA:A1K3V1,InterPro:IPR000158,InterPro:IPR003008,InterPro:IPR008280,InterPro:IPR018316,InterPro:IPR024757,UniProtKB/TrEMBL:A1K3V1,NCBI_GP:CAL93506.1;Name=CAL93506.1;Note=This protein is essential to the cell-division process. It seems to assemble into a dynamic ring on the inner surface of the cytoplasmic membrane at the place where division will occur and the formation of the ring is the signal for septation to begin. Binds to and hydrolyzes GTP. ftsZ: cell division protein FtsZ%3B~High confidence in function and specificity;gbkey=CDS;gene=FtsZ;product=cell division protein FtsZ;protein_id=CAL93506.1;transl_table=11
AM406670.1	EMBL	gene	952910	953833	.	+	.	ID=gene901;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=azo0890
AM406670.1	EMBL	CDS	952910	953833	.	+	0	ID=cds888;Parent=gene901;Dbxref=EnsemblGenomes-Gn:azo0890,EnsemblGenomes-Tr:CAL93507,GOA:A1K3V2,InterPro:IPR004463,InterPro:IPR011334,InterPro:IPR015870,InterPro:IPR020568,NCBI_GP:CAL93507.1;Name=CAL93507.1;Note=Probable UDP-3-O-acyl N-acetylglucosamine deacetylase. Homology to lpxC of P. aeruginosa of 58%25 (Sprot:LPXC_PSEAE) Involved in the biosynthesis of lipid A a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (By similarity). InterPro: UDP-3-0-acyl N-acetylglucosamine deacetylase (IPR004463) tigrfam: lpxC: UDP-3-0-acyl N-acetylglucosamine deacetylase Pfam: UDP-3-0-acyl N-acetylglucosamine deacetylase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=lpxC;product=probable UDP-3-O-acyl N-acetylglycosmaine deacetylase;protein_id=CAL93507.1;transl_table=11
AM406670.1	EMBL	gene	953868	954056	.	+	.	ID=gene902;Name=azo0891;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0891
AM406670.1	EMBL	CDS	953868	954056	.	+	0	ID=cds889;Parent=gene902;Dbxref=EnsemblGenomes-Gn:azo0891,EnsemblGenomes-Tr:CAL93508,UniProtKB/TrEMBL:A1K3V3,NCBI_GP:CAL93508.1;Name=CAL93508.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. signal peptide. 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93508.1;transl_table=11
AM406670.1	EMBL	gene	954061	954489	.	-	.	ID=gene903;Name=azo0892;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0892
AM406670.1	EMBL	CDS	954061	954489	.	-	0	ID=cds890;Parent=gene903;Dbxref=EnsemblGenomes-Gn:azo0892,EnsemblGenomes-Tr:CAL93509,InterPro:IPR007922,UniProtKB/TrEMBL:A1K3V4,NCBI_GP:CAL93509.1;Name=CAL93509.1;Note=Conserved hypothetical protein. Homology to CV4285 of C.violaceum of 32%25 (tremble:Q7NQ55). No domains predicted. No TMHs No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93509.1;transl_table=11
AM406670.1	EMBL	gene	954595	957324	.	+	.	ID=gene904;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=azo0893
AM406670.1	EMBL	CDS	954595	957324	.	+	0	ID=cds891;Parent=gene904;Dbxref=EnsemblGenomes-Gn:azo0893,EnsemblGenomes-Tr:CAL93510,GOA:A1K3V5,InterPro:IPR000185,InterPro:IPR004027,InterPro:IPR011115,InterPro:IPR011116,InterPro:IPR011130,InterPro:IPR014018,InterPro:IPR020937,InterPro:IPR027417,NCBI_GP:CAL93510.1;Name=CAL93510.1;Note=Preprotein translocase secA subunit. Involved in protein export. Interacts with the secY/secE subunits. SecA has a central role in coupling the hydrolysis of ATP to the transfer of pre-secretory periplasmic and outer membrane proteins across the membrane. InterPro: SecA protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=secA;product=preprotein translocase SecA subunit;protein_id=CAL93510.1;transl_table=11
AM406670.1	EMBL	gene	957401	958882	.	+	.	ID=gene905;Name=azo0894;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0894
AM406670.1	EMBL	CDS	957401	958882	.	+	0	ID=cds892;Parent=gene905;Dbxref=EnsemblGenomes-Gn:azo0894,EnsemblGenomes-Tr:CAL93511,InterPro:IPR003018,InterPro:IPR013976,InterPro:IPR029016,UniProtKB/TrEMBL:A1K3V6,NCBI_GP:CAL93511.1;Name=CAL93511.1;Note=GAF-domain containing protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=GAF-domain containing protein;protein_id=CAL93511.1;transl_table=11
AM406670.1	EMBL	gene	958968	960209	.	+	.	ID=gene906;Name=argJ;gbkey=Gene;gene=argJ;gene_biotype=protein_coding;locus_tag=azo0895
AM406670.1	EMBL	CDS	958968	960209	.	+	0	ID=cds893;Parent=gene906;Dbxref=EnsemblGenomes-Gn:azo0895,EnsemblGenomes-Tr:CAL93512,GOA:A1K3V7,InterPro:IPR002813,InterPro:IPR016117,UniProtKB/TrEMBL:A1K3V7,NCBI_GP:CAL93512.1;Name=CAL93512.1;Note=Arginine biosynthesis bifunctional protein argJ. Homology to argJ of N. gonorrhoeae of 55%25 (AAA25447). Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetlyglutamate from glutamate (EC 2.3.1.35) and acetyl-CoA and of ornithine by transacetylation between acetylornithine and glutamate (EC 2.3.1.1) (By similarity). Tigrfam: ArgJ: glutamate N-acetyltransferase/amino acid biosynthesis Pfam: ArgJ family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=argJ;product=probable arginine biosynthesis bifunctional protein ArgJ;protein_id=CAL93512.1;transl_table=11
AM406670.1	EMBL	gene	960324	961154	.	+	.	ID=gene907;Name=azo0896;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0896
AM406670.1	EMBL	CDS	960324	961154	.	+	0	ID=cds894;Parent=gene907;Dbxref=EnsemblGenomes-Gn:azo0896,EnsemblGenomes-Tr:CAL93513,GOA:A1K3V8,InterPro:IPR001932,InterPro:IPR015655,UniProtKB/TrEMBL:A1K3V8,NCBI_GP:CAL93513.1;Name=CAL93513.1;Note=Putative phosphoprotein phosphatase%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative phosphoprotein phosphatase;protein_id=CAL93513.1;transl_table=11
AM406670.1	EMBL	gene	961167	962186	.	+	.	ID=gene908;Name=azo0897;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0897
AM406670.1	EMBL	CDS	961167	962186	.	+	0	ID=cds895;Parent=gene908;Dbxref=EnsemblGenomes-Gn:azo0897,EnsemblGenomes-Tr:CAL93514,InterPro:IPR001440,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR013105,InterPro:IPR018392,InterPro:IPR019734,UniProtKB/TrEMBL:A1K3V9,NCBI_GP:CAL93514.1;Name=CAL93514.1;Note=Hypothetical secreted protein. Homology to pp3428 of P. putida of 26%25 (tremble:Q88HD2). Domain structure: 111 aa - 157 aa LysM%3B 232 aa - 313 aa TRP. Pfam: LysM domain%3B TRP. signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93514.1;transl_table=11
AM406670.1	EMBL	gene	962191	963855	.	-	.	ID=gene909;Name=azo0898;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0898
AM406670.1	EMBL	CDS	962191	963855	.	-	0	ID=cds896;Parent=gene909;Dbxref=EnsemblGenomes-Gn:azo0898,EnsemblGenomes-Tr:CAL93515,GOA:A1K3W0,InterPro:IPR000719,InterPro:IPR003660,InterPro:IPR011009,InterPro:IPR029151,UniProtKB/TrEMBL:A1K3W0,NCBI_GP:CAL93515.1;Name=CAL93515.1;Note=Putative serine/threonine protein kinase%2C%3B~Family membership;gbkey=CDS;product=putative serine/threonine protein kinase;protein_id=CAL93515.1;transl_table=11
AM406670.1	EMBL	gene	963863	964384	.	-	.	ID=gene910;Name=azo0899;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0899
AM406670.1	EMBL	CDS	963863	964384	.	-	0	ID=cds897;Parent=gene910;Dbxref=EnsemblGenomes-Gn:azo0899,EnsemblGenomes-Tr:CAL93516,InterPro:IPR000253,InterPro:IPR008984,UniProtKB/TrEMBL:A1K3W1,NCBI_GP:CAL93516.1;Name=CAL93516.1;Note=Hypothetical membrane protein. No good homology to a protein of similar size of the data bank. Pfam: FHA domain (PF00498). The forkhead-associated (FHA) domain is a putative nuclear signalling domain found in a variety of otherwise unrelated proteins. The FHA domain comprise approximately 55 to 75 amino acids and contains three highly conserved blocks separated by divergent spacer regions.To date%2C genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins%2C such as kinases%2C phosphatases%2C kinesins%2Ctranscription factors%2C RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair%2C signal transduction%2C vesicular transport and protein degradation are just a few examples. Interpro: Forkhead-associated (IPR000253). no signal peptide. 1 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93516.1;transl_table=11
AM406670.1	EMBL	gene	964488	964871	.	-	.	ID=gene911;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;locus_tag=azo0900
AM406670.1	EMBL	CDS	964488	964871	.	-	0	ID=cds898;Parent=gene911;Dbxref=EnsemblGenomes-Gn:azo0900,EnsemblGenomes-Tr:CAL93517,InterPro:IPR007474,InterPro:IPR023065,NCBI_GP:CAL93517.1;Name=CAL93517.1;Note=ApaG protein. In S.typhimurium mutations in apaG/corD give a phenotype of low-level Co(2+) resistance. They also decrease Mg(2+) efflux but not influx via the corA Mg(2+) transport system. 57%25 DUF525. Pfam:PF04379%3B DUF525%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=apaG;product=conserved hypothetical protein;protein_id=CAL93517.1;transl_table=11
AM406670.1	EMBL	gene	965057	966433	.	+	.	ID=gene912;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=azo0901
AM406670.1	EMBL	CDS	965057	966433	.	+	0	ID=cds899;Parent=gene912;Dbxref=EnsemblGenomes-Gn:azo0901,EnsemblGenomes-Tr:CAL93518,GOA:A1K3W3,InterPro:IPR000362,InterPro:IPR004769,InterPro:IPR008948,InterPro:IPR013539,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,UniProtKB/TrEMBL:A1K3W3,NCBI_GP:CAL93518.1;Name=CAL93518.1;Note=Adenylosuccinate lyase (Adenylosuccinase) (ASL).%3B~High confidence in function and specificity;gbkey=CDS;gene=purB;product=adenylosuccinate lyase;protein_id=CAL93518.1;transl_table=11
AM406670.1	EMBL	gene	966512	966829	.	+	.	ID=gene913;Name=azo0902;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0902
AM406670.1	EMBL	CDS	966512	966829	.	+	0	ID=cds900;Parent=gene913;Dbxref=EnsemblGenomes-Gn:azo0902,EnsemblGenomes-Tr:CAL93519,InterPro:IPR016755,UniProtKB/TrEMBL:A1K3W4,NCBI_GP:CAL93519.1;Name=CAL93519.1;Note=Conserved hypothetical protein. Homology to RS03757 of R.solanacearum of 44%25 (tremble:Q8XS71). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93519.1;transl_table=11
AM406670.1	EMBL	gene	966923	967855	.	-	.	ID=gene914;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;locus_tag=azo0903
AM406670.1	EMBL	CDS	966923	967855	.	-	0	ID=cds901;Parent=gene914;Dbxref=EnsemblGenomes-Gn:azo0903,EnsemblGenomes-Tr:CAL93520,GOA:A1K3W5,InterPro:IPR005665,InterPro:IPR022645,InterPro:IPR022646,InterPro:IPR022813,UniProtKB/TrEMBL:A1K3W5,NCBI_GP:CAL93520.1;Name=CAL93520.1;Note=Protein-export membrane protein secF. Involved in protein export. Part of the prokaryotic protein translocation apparatus which comprise secA%2C secB%2C secD%2CsecE%2C secF%2C secG and secY. InterPro: SecD/SecF/SecDF export membrane proteins 2A0604s01: protein-export membrane prot (Tigerfam) probable 6 TMHS no signal peptide Pfam: SecD-SecF%3B~High confidence in function and specificity;gbkey=CDS;gene=secF;product=protein-export membrane protein SecF;protein_id=CAL93520.1;transl_table=11
AM406670.1	EMBL	gene	967876	969750	.	-	.	ID=gene915;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=azo0904
AM406670.1	EMBL	CDS	967876	969750	.	-	0	ID=cds902;Parent=gene915;Dbxref=EnsemblGenomes-Gn:azo0904,EnsemblGenomes-Tr:CAL93521,GOA:A1K3W6,InterPro:IPR005791,InterPro:IPR022645,InterPro:IPR022646,InterPro:IPR022813,InterPro:IPR027398,UniProtKB/TrEMBL:A1K3W6,NCBI_GP:CAL93521.1;Name=CAL93521.1;Note=Protein-export membrane protein secD. Involved in protein export. InterPro: SecD/SecF/SecDF export membrane proteins 2A0604s01: protein-export membrane pr (tigrfam) probable 4 TMHs%2C no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=secD;product=protein-export membrane protein SecD;protein_id=CAL93521.1;transl_table=11
AM406670.1	EMBL	gene	969851	970180	.	-	.	ID=gene916;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=azo0905
AM406670.1	EMBL	CDS	969851	970180	.	-	0	ID=cds903;Parent=gene916;Dbxref=EnsemblGenomes-Gn:azo0905,EnsemblGenomes-Tr:CAL93522,InterPro:IPR003849,UniProtKB/TrEMBL:A1K3W7,NCBI_GP:CAL93522.1;Name=CAL93522.1;Note=Probable preprotein translocase subunit YajC. Homology to yajC of E. coli of 41%25 (sprot|YAJC_ECOLI) Involved in the sec-dependent protein transport through the inner membrane of bacteria. Tigrfam: yajC: preprotein translocase%2C YajC subunit Pfam: Uncharcterized secreted protein%2C YajC family (PF02699) Interpro: YajC (IPR003849) no signal peptide. 1 TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=yajC;product=probable preprotein translocase subunit YajC;protein_id=CAL93522.1;transl_table=11
AM406670.1	EMBL	gene	970362	971201	.	+	.	ID=gene917;Name=azo0906;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0906
AM406670.1	EMBL	CDS	970362	971201	.	+	0	ID=cds904;Parent=gene917;Dbxref=EnsemblGenomes-Gn:azo0906,EnsemblGenomes-Tr:CAL93523,InterPro:IPR013976,UniProtKB/TrEMBL:A1K3W8,NCBI_GP:CAL93523.1;Name=CAL93523.1;Note=Conserved hypothetical signal transduction protein. Homology to Daro03002984 of Dechloromonas aromatica of 39%25 (gi|53729872|ref|ZP_00150342.2|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical signal transduction protein;protein_id=CAL93523.1;transl_table=11
AM406670.1	EMBL	gene	971214	972326	.	-	.	ID=gene918;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=azo0907
AM406670.1	EMBL	CDS	971214	972326	.	-	0	ID=cds905;Parent=gene918;Dbxref=EnsemblGenomes-Gn:azo0907,EnsemblGenomes-Tr:CAL93524,GOA:A1K3W9,InterPro:IPR002616,InterPro:IPR004803,NCBI_GP:CAL93524.1;Name=CAL93524.1;Note=Queuine tRNA-ribosyltransferase (EC 2.4.2.29) (tRNA-guanine transglycosylase) (Guanine insertion enzyme). Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAS with GU(N) anticodons (tRNA-Asp -Asn -His and -Tyr). After this exchange a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine resulting in the hypermodified nucleoside queuosine (Q) (7-(((45-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)%3B~High confidence in function and specificity;gbkey=CDS;gene=tgt;product=queuine tRNA-ribosyltransferase;protein_id=CAL93524.1;transl_table=11
AM406670.1	EMBL	gene	972316	973353	.	-	.	ID=gene919;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=azo0908
AM406670.1	EMBL	CDS	972316	973353	.	-	0	ID=cds906;Parent=gene919;Dbxref=EnsemblGenomes-Gn:azo0908,EnsemblGenomes-Tr:CAL93525,GOA:A1K3X0,InterPro:IPR003699,NCBI_GP:CAL93525.1;Name=CAL93525.1;Note=S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) (Queuosine biosynthesis protein queA). Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step. The ribosyl moiety of AdoMet is transferred and isomerized to the epoxycyclopentane residue of oQ.%3B~High confidence in function and specificity;gbkey=CDS;gene=queA;product=S-adenosylmethionine:tRNA ribosyltransferase-isomerase;protein_id=CAL93525.1;transl_table=11
AM406670.1	EMBL	gene	973414	973498	.	+	.	ID=gene920;Name=tRNA-Leu;gbkey=Gene;gene=tRNA-Leu;gene_biotype=tRNA;locus_tag=azo_tRNA_0010
AM406670.1	EMBL	tRNA	973414	973498	.	+	.	ID=rna13;Parent=gene920;anticodon=(pos:973448..973450);gbkey=tRNA;gene=tRNA-Leu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Leu
AM406670.1	EMBL	exon	973414	973498	.	+	.	ID=id14;Parent=rna13;anticodon=(pos:973448..973450);gbkey=tRNA;gene=tRNA-Leu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Leu
AM406670.1	EMBL	gene	973554	974405	.	-	.	ID=gene921;Name=nhaR;gbkey=Gene;gene=nhaR;gene_biotype=protein_coding;locus_tag=azo0909
AM406670.1	EMBL	CDS	973554	974405	.	-	0	ID=cds907;Parent=gene921;Dbxref=EnsemblGenomes-Gn:azo0909,EnsemblGenomes-Tr:CAL93526,GOA:A1K3X1,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K3X1,NCBI_GP:CAL93526.1;Name=CAL93526.1;Note=Transcriptional activator protein nhaR (Na+/H+ antiporter regulatory protein). Plays a role in the positive regulation of nhaA. Similar to SWISSPROT: sprot|NHAR_ECOLI (34%25 Escherichia coli%2C and Shigella flexneri%2C transcriptional activator protein NhaR (na+/h+ antiporter regulatory protein)) InterPro: IPR000847 HTH_LysR. IPR009058 Winged helix DNA-binding. Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2ClysR family.%3B~High confidence in function and specificity;gbkey=CDS;gene=nhaR;product=transcriptional regulator%2C LysR family;protein_id=CAL93526.1;transl_table=11
AM406670.1	EMBL	gene	974584	974925	.	+	.	ID=gene922;Name=azo0910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0910
AM406670.1	EMBL	CDS	974584	974925	.	+	0	ID=cds908;Parent=gene922;Dbxref=EnsemblGenomes-Gn:azo0910,EnsemblGenomes-Tr:CAL93527,GOA:A1K3X2,InterPro:IPR003489,UniProtKB/TrEMBL:A1K3X2,NCBI_GP:CAL93527.1;Name=CAL93527.1;Note=Conserved hypothetical protein. Homology to ebD81 Azoarcus sp. EbN1 of 64%25 (gnl|keqq|eba:ebD81(KEGG)). No domains predicted. No signal peptid. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93527.1;transl_table=11
AM406670.1	EMBL	gene	974987	975652	.	+	.	ID=gene923;Name=yccA;gbkey=Gene;gene=yccA;gene_biotype=protein_coding;locus_tag=azo0911
AM406670.1	EMBL	CDS	974987	975652	.	+	0	ID=cds909;Parent=gene923;Dbxref=EnsemblGenomes-Gn:azo0911,EnsemblGenomes-Tr:CAL93528,GOA:A1K3X3,InterPro:IPR006214,UniProtKB/TrEMBL:A1K3X3,NCBI_GP:CAL93528.1;Name=CAL93528.1;Note=Hypothetical protein PA2604. pir:D85624: 57%25 identity.73%25 similarity SIMILARITY:Belongs to the BI1 family. InterPro:Uncharacterized protein family UPF0005 IPR006213%3B Bax_inhbtr1. IPR006214%3B UPF0005. Pfam:ZIP: Zinc transporter Probable glutamatereceptor Signal peptide present (SignalP predicted) and transmembrane helices 7 (TMHMM predicted) Pfam:PF01027%3B UPF0005%3B InterPro: Uncharacterized protein family UPF0005 2_A_01_02: Multidrug resistance protein%3B~Specificity unclear;gbkey=CDS;gene=yccA;product=probable carrier/transport protein;protein_id=CAL93528.1;transl_table=11
AM406670.1	EMBL	gene	975796	977517	.	+	.	ID=gene924;Name=rosB;gbkey=Gene;gene=rosB;gene_biotype=protein_coding;locus_tag=azo0912
AM406670.1	EMBL	CDS	975796	977517	.	+	0	ID=cds910;Parent=gene924;Dbxref=EnsemblGenomes-Gn:azo0912,EnsemblGenomes-Tr:CAL93529,GOA:A1K3X4,InterPro:IPR003148,InterPro:IPR006153,InterPro:IPR016040,UniProtKB/TrEMBL:A1K3X4,NCBI_GP:CAL93529.1;Name=CAL93529.1;Note=Probable potassium antiporter%2C rosB. 38%25 HPr_SerP_S.IPR004771%3B K_eff.IPR006153%3B Na_H_porter. IPR003148%3B TrkA_N. Pfam:PF00999%3B Na_H_Exchanger%3B 1.PF02254%3B TrkA_N%3B 1. TIGRFAMs:TIGR00932%3B 2a37%3B 1. TMhelix: 12.%3B~High confidence in function and specificity;gbkey=CDS;gene=rosB;product=putative Potassium/proton antiporter;protein_id=CAL93529.1;transl_table=11
AM406670.1	EMBL	gene	977524	978858	.	-	.	ID=gene925;Name=ytfL2;gbkey=Gene;gene=ytfL2;gene_biotype=protein_coding;locus_tag=azo0913
AM406670.1	EMBL	CDS	977524	978858	.	-	0	ID=cds911;Parent=gene925;Dbxref=EnsemblGenomes-Gn:azo0913,EnsemblGenomes-Tr:CAL93530,GOA:A1K3X5,InterPro:IPR000644,InterPro:IPR002550,InterPro:IPR005170,InterPro:IPR016166,InterPro:IPR016169,UniProtKB/TrEMBL:A1K3X5,NCBI_GP:CAL93530.1;Name=CAL93530.1;Note=Hypothetical protein sll0260. CBS domains are found in the intracellular regions of a number of different integral membrane proteins. Two CBS domains are found in intracellular loops of several voltage gated chloride channels. A family of magnesium transporters also contain CBS domains. TREMBL:Q8KEZ1: 61%25 identity%2C 74%25 similarity InterPro: Domain of unknown function DUF21 InterPro:IPR002550%3B CBS. IPR000644: CBS_domain. IPR005170: CorC_transpt-asc. Pfam: PF00571%3B CBS%3B 2. PF03471: CorC_HlyC%3B 1. PF01595: DUF21%3B gntP: gluconate transporter Signal peptide present Transmembrane helices 3%3B~Specificity unclear;gbkey=CDS;gene=ytfL2;product=probable hemolysin;protein_id=CAL93530.1;transl_table=11
AM406670.1	EMBL	gene	979395	980357	.	+	.	ID=gene926;Name=terC;gbkey=Gene;gene=terC;gene_biotype=protein_coding;locus_tag=azo0914
AM406670.1	EMBL	CDS	979395	980357	.	+	0	ID=cds912;Parent=gene926;Dbxref=EnsemblGenomes-Gn:azo0914,EnsemblGenomes-Tr:CAL93531,GOA:A1K3X6,InterPro:IPR005496,InterPro:IPR022369,UniProtKB/TrEMBL:A1K3X6,NCBI_GP:CAL93531.1;Name=CAL93531.1;Note=Tellurium resistance protein terC. Could conceivably alter the intracellular level of tellurium in a manner leading to resistance. Alternatively its presence in the membrane may provide a barrier to entry of the tellurium ions.32%25 TerC. Pfam: PF03741%3B TerC%3B 1. TMHelix:9.%3B~High confidence in function and specificity;gbkey=CDS;gene=terC;product=putative tellurium resistance protein;protein_id=CAL93531.1;transl_table=11
AM406670.1	EMBL	gene	980435	981400	.	+	.	ID=gene927;Name=accA;gbkey=Gene;gene=accA;gene_biotype=protein_coding;locus_tag=azo0915
AM406670.1	EMBL	CDS	980435	981400	.	+	0	ID=cds913;Parent=gene927;Dbxref=EnsemblGenomes-Gn:azo0915,EnsemblGenomes-Tr:CAL93532,GOA:A1K3X7,InterPro:IPR001095,InterPro:IPR011763,InterPro:IPR029045,NCBI_GP:CAL93532.1;Name=CAL93532.1;Note=Function:-THIS PROTEIN IS A COMPONENT OF THE ACETYL COENZYME A CARBOXYLASE COMPLEX%3B FIRST BIOTIN CARBOXYLASE CATALYZES THE CARBOXYLATION OF THE CARRIER PROTEIN AND THEN THE TRANSCARBOXYLASE TRANSFERS THE CARBOXYL GROUP TO FORM MALONYL-COA (BY SIMILARITY). Identities %3D 207/313 (66%25) Entry name:- SWISSPROT:ACCA_ECOLI Prim. accession # P30867 InterPro:- IPR001095%3B Ac-CoA_carboxylA. Pfam :-PF03255%3B ACCA%3B 1. Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=accA;product=probable acetyl-coenzyme a carboxylase carboxyl transferase subunit alpha;protein_id=CAL93532.1;transl_table=11
AM406670.1	EMBL	gene	981412	982758	.	+	.	ID=gene928;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=azo0916
AM406670.1	EMBL	CDS	981412	982758	.	+	0	ID=cds914;Parent=gene928;Dbxref=EnsemblGenomes-Gn:azo0916,EnsemblGenomes-Tr:CAL93533,GOA:A1K3X8,InterPro:IPR011063,InterPro:IPR012094,InterPro:IPR012795,InterPro:IPR012796,InterPro:IPR014729,InterPro:IPR015262,InterPro:IPR020825,NCBI_GP:CAL93533.1;Name=CAL93533.1;Note=Putative tRNA(Ile)-lysidine synthetase. Homology to tils of E.coli of 34%25 (gnl|keqq|eco:b0188(KEGG)). Pfam: PP-loop family. Tigrfam: tRNA(Ile)-lysidine synthetase. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria%2C the wobble position of the tRNA(Ile) recognizing AUA is lysidine%2C a lysine derivative of cytidine. This family describes a protein domain found%2C apparently%2C in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable%3B some%2C including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase%2C include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( PF01171). It appears in the literature and protein databases as TilS%2C YacA%2C and putative cell cycle protein MesJ (a misnomer). No signal peptide. No TMHs.%3B~Family membership;gbkey=CDS;gene=tilS;product=putative tRNA(Ile)-lysidine synthetase;protein_id=CAL93533.1;transl_table=11
AM406670.1	EMBL	gene	982714	983319	.	-	.	ID=gene929;Name=azo0917;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0917
AM406670.1	EMBL	CDS	982714	983319	.	-	0	ID=cds915;Parent=gene929;Dbxref=EnsemblGenomes-Gn:azo0917,EnsemblGenomes-Tr:CAL93534,GOA:A1K3X9,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K3X9,NCBI_GP:CAL93534.1;Name=CAL93534.1;Note=C4-dicarboxylate transport transcriptional regulatory protein%2C%3B~High confidence in function and specificity;gbkey=CDS;product=two-component response regulator;protein_id=CAL93534.1;transl_table=11
AM406670.1	EMBL	gene	983320	985311	.	-	.	ID=gene930;Name=dctS;gbkey=Gene;gene=dctS;gene_biotype=protein_coding;locus_tag=azo0918
AM406670.1	EMBL	CDS	983320	985311	.	-	0	ID=cds916;Parent=gene930;Dbxref=EnsemblGenomes-Gn:azo0918,EnsemblGenomes-Tr:CAL93535,GOA:A1K3Y0,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR013767,UniProtKB/TrEMBL:A1K3Y0,NCBI_GP:CAL93535.1;Name=CAL93535.1;Note=C4-dicarboxylate transport sensor protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=dctS;product=two-component sensor kinase;protein_id=CAL93535.1;transl_table=11
AM406670.1	EMBL	gene	985540	986544	.	+	.	ID=gene931;Name=dctP2;gbkey=Gene;gene=dctP2;gene_biotype=protein_coding;locus_tag=azo0919
AM406670.1	EMBL	CDS	985540	986544	.	+	0	ID=cds917;Parent=gene931;Dbxref=EnsemblGenomes-Gn:azo0919,EnsemblGenomes-Tr:CAL93536,GOA:A1K3Y1,InterPro:IPR004682,InterPro:IPR018389,UniProtKB/TrEMBL:A1K3Y1,NCBI_GP:CAL93536.1;Name=CAL93536.1;Note=TRAP-dicarboxylate transporter. Binds c4-dicarboxylates%3B part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 70%25 TRAP_transptDctP. Pfam:PF03480%3B SBP_bac_7%3B 1. TIGRFAMs:TIGR00787%3B dctP%3B 1. Signal peptide: present. TMhelix:1%3B~High confidence in function and specificity;gbkey=CDS;gene=dctP2;product=probable c4-dicarboxylate-binding periplasmic protein;protein_id=CAL93536.1;transl_table=11
AM406670.1	EMBL	gene	986612	987310	.	+	.	ID=gene932;Name=dctQ2;gbkey=Gene;gene=dctQ2;gene_biotype=protein_coding;locus_tag=azo0920
AM406670.1	EMBL	CDS	986612	987310	.	+	0	ID=cds918;Parent=gene932;Dbxref=EnsemblGenomes-Gn:azo0920,EnsemblGenomes-Tr:CAL93537,InterPro:IPR007387,UniProtKB/TrEMBL:A1K3Y2,NCBI_GP:CAL93537.1;Name=CAL93537.1;Note=The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 45%25 DctQ. Pfam:PF04290%3B DctQ%3B 1. TMhelix:4.%3B~High confidence in function and specificity;gbkey=CDS;gene=dctQ2;product=putative TRAP-type C4-dicarboxylate transport system%2C small permease;protein_id=CAL93537.1;transl_table=11
AM406670.1	EMBL	gene	987325	988611	.	+	.	ID=gene933;Name=dctM2;gbkey=Gene;gene=dctM2;gene_biotype=protein_coding;locus_tag=azo0921
AM406670.1	EMBL	CDS	987325	988611	.	+	0	ID=cds919;Parent=gene933;Dbxref=EnsemblGenomes-Gn:azo0921,EnsemblGenomes-Tr:CAL93538,GOA:A1K3Y3,InterPro:IPR004681,InterPro:IPR010656,UniProtKB/TrEMBL:A1K3Y3,NCBI_GP:CAL93538.1;Name=CAL93538.1;Note=The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 60%25 DctM.IPR000252%3B DedA.IPR004681%3B TRAP_transptDctM. Pfam:PF06808%3B DctM%3B 1.PF00597%3B DedA%3B 1. TIGRFAMs:TIGR00786%3B dctM%3B 1. TMhelix:13. Signal peptide: present.%3B~High confidence in function and specificity;gbkey=CDS;gene=dctM2;product=putative TRAP-type C4-dicarboxylate transport system%2C large permease;protein_id=CAL93538.1;transl_table=11
AM406670.1	EMBL	gene	988762	989409	.	+	.	ID=gene934;Name=dedA;gbkey=Gene;gene=dedA;gene_biotype=protein_coding;locus_tag=azo0922
AM406670.1	EMBL	CDS	988762	989409	.	+	0	ID=cds920;Parent=gene934;Dbxref=EnsemblGenomes-Gn:azo0922,EnsemblGenomes-Tr:CAL93539,InterPro:IPR015414,UniProtKB/TrEMBL:A1K3Y4,NCBI_GP:CAL93539.1;Name=CAL93539.1;Note=DedA family protein%2C 57%25 identity(75%25 similarity) to TrEMBL%3BQ88QF4. TrEMBl%3BQ889M5(57%25 identity). SwissProt%3BP09548(55%25 identity) Has PF00597%2C DedA family%3BIPR000252%3BThis family combines the DedA related proteins and YIAN/YGIK family. Members of this family are not functionally characterised. These proteins contain multiple predicted transmembrane regions.%3B~High confidence in function and specificity;gbkey=CDS;gene=dedA;product=DedA protein;protein_id=CAL93539.1;transl_table=11
AM406670.1	EMBL	gene	989496	989921	.	+	.	ID=gene935;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=azo0923
AM406670.1	EMBL	CDS	989496	989921	.	+	0	ID=cds921;Parent=gene935;Dbxref=EnsemblGenomes-Gn:azo0923,EnsemblGenomes-Tr:CAL93540,GOA:A1K3Y5,InterPro:IPR001564,InterPro:IPR023005,NCBI_GP:CAL93540.1;Name=CAL93540.1;Note=Nucleoside diphosphate kinase (NDP kinase) (Nucleoside-2-P kinase). InterPro: Nucleoside diphosphate kinase%3B~High confidence in function and specificity;gbkey=CDS;gene=ndk;product=Nucleoside-diphosphate kinase;protein_id=CAL93540.1;transl_table=11
AM406670.1	EMBL	gene	990009	991136	.	+	.	ID=gene936;Name=azo0924;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0924
AM406670.1	EMBL	CDS	990009	991136	.	+	0	ID=cds922;Parent=gene936;Dbxref=EnsemblGenomes-Gn:azo0924,EnsemblGenomes-Tr:CAL93541,GOA:A1K3Y6,InterPro:IPR004383,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR027492,NCBI_GP:CAL93541.1;Name=CAL93541.1;Note=Hypothetical protein yfgB. putative fe-s-cluster redox enzyme TREMBL:Q7NS85: 70%25 identity%3B 80%25 similarity. InterPro:IPR004383%3B Cons_hypoth48. IPR007197: Radical_SAM. Pfam:PF04055%3B Radical_SAM%3B No signal peptide. No transmembrane helices. TIGR00048: conserved hypothetical prote%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93541.1;transl_table=11
AM406670.1	EMBL	gene	991136	991951	.	+	.	ID=gene937;Name=pilF;gbkey=Gene;gene=pilF;gene_biotype=protein_coding;locus_tag=azo0925
AM406670.1	EMBL	CDS	991136	991951	.	+	0	ID=cds923;Parent=gene937;Dbxref=EnsemblGenomes-Gn:azo0925,EnsemblGenomes-Tr:CAL93542,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR013360,InterPro:IPR019734,UniProtKB/TrEMBL:A1K3Y7,NCBI_GP:CAL93542.1;Name=CAL93542.1;Note=Type 4 pilus biogenesis protein%2C%3B~Function unclear;gbkey=CDS;gene=pilF;product=putative type 4 pilus biogenesis protein;protein_id=CAL93542.1;transl_table=11
AM406670.1	EMBL	gene	991948	992856	.	+	.	ID=gene938;Name=azo0926;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0926
AM406670.1	EMBL	CDS	991948	992856	.	+	0	ID=cds924;Parent=gene938;Dbxref=EnsemblGenomes-Gn:azo0926,EnsemblGenomes-Tr:CAL93543,GOA:A1K3Y8,InterPro:IPR010982,InterPro:IPR025194,UniProtKB/TrEMBL:A1K3Y8,NCBI_GP:CAL93543.1;Name=CAL93543.1;Note=Transcriptional regulator %2C 36%25 identity to TrEMBL%3BQ88PJ8. Weak homology with other proteins spanning entire length. Prosite%2CPS50943%3B HTH_CROC1%3B The cro/C1-type HTH domain is a DNA-binding%2C helix-turn-helix (HTH) domain of about 50-60 residues present in transcriptional regulators. The domain is named after the transcriptional repressors cro and C1 of temperate bacteriophages 434 and lambda%2C respectively.%3B~Specificity unclear;gbkey=CDS;product=transcriptional regulator;protein_id=CAL93543.1;transl_table=11
AM406670.1	EMBL	gene	992856	994103	.	+	.	ID=gene939;Name=gcpE;gbkey=Gene;gene=gcpE;gene_biotype=protein_coding;locus_tag=azo0927
AM406670.1	EMBL	CDS	992856	994103	.	+	0	ID=cds925;Parent=gene939;Dbxref=EnsemblGenomes-Gn:azo0927,EnsemblGenomes-Tr:CAL93544,GOA:A1K3Y9,InterPro:IPR004588,InterPro:IPR016425,UniProtKB/TrEMBL:A1K3Y9,NCBI_GP:CAL93544.1;Name=CAL93544.1;Note=Probable 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC 1.17.4.3). Homology to gcpE of T. thermophilus of 61%25 (trembl|Q84GJ3(SRS)). Converts 2C-methyl-D-erythritol 24-cyclodiphosphate (ME-24cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (By similarity). Tigrfam: gcpE: gcpE protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=gcpE;product=probable 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;protein_id=CAL93544.1;transl_table=11
AM406670.1	EMBL	gene	994138	995439	.	+	.	ID=gene940;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=azo0928
AM406670.1	EMBL	CDS	994138	995439	.	+	0	ID=cds926;Parent=gene940;Dbxref=EnsemblGenomes-Gn:azo0928,EnsemblGenomes-Tr:CAL93545,GOA:A1K3Z0,InterPro:IPR004154,InterPro:IPR004516,InterPro:IPR006195,InterPro:IPR015807,NCBI_GP:CAL93545.1;Name=CAL93545.1;Note=Histidyl-tRNA synthetase. hisS%2C 75%25 idemtity to TrEMBL%3BQ5P7B4. Has Pfam%3BPF00587%2C tRNA synthetase class II core domain (G%2C H%2C P%2C S and T).Other tRNA synthetase sub-families are too disIPR002314%2CtRNA-synt_2b. Has Pfam%3BPF03129%2CAnticodon binding domain. This domain is found in histidyl%2C glycyl%2C threonyl and prolyl tRNA synthetases it is probably the anticodon binding domain%3B~High confidence in function and specificity;gbkey=CDS;gene=hisS;product=Histidine--tRNA ligase.;protein_id=CAL93545.1;transl_table=11
AM406670.1	EMBL	gene	995426	996070	.	+	.	ID=gene941;Name=azo0929;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0929
AM406670.1	EMBL	CDS	995426	996070	.	+	0	ID=cds927;Parent=gene941;Dbxref=EnsemblGenomes-Gn:azo0929,EnsemblGenomes-Tr:CAL93546,InterPro:IPR018704,InterPro:IPR026039,UniProtKB/TrEMBL:A1K3Z1,NCBI_GP:CAL93546.1;Name=CAL93546.1;Note=Putative membrane protein%2C 32%25 identity to TrEMBL%3BQ7WHN2. Signal Peptide present.%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93546.1;transl_table=11
AM406670.1	EMBL	gene	996074	997216	.	+	.	ID=gene942;Name=azo0930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0930
AM406670.1	EMBL	CDS	996074	997216	.	+	0	ID=cds928;Parent=gene942;Dbxref=EnsemblGenomes-Gn:azo0930,EnsemblGenomes-Tr:CAL93547,GOA:A1K3Z2,InterPro:IPR011047,InterPro:IPR017687,InterPro:IPR018391,InterPro:IPR027295,UniProtKB/TrEMBL:A1K3Z2,NCBI_GP:CAL93547.1;Name=CAL93547.1;Note=PQQ enzyme repeat protein%2C 40%25 identical(60%25 similarity)to TrEMBL%3BQ82XU7. Signal Peptide present. Has 6 copies SMART%3BSM00564%2C PQQ%2C beta-propeller repeat%3BIPR002372%3B Beta-propeller repeat occurrs in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor%2C in Ire1p-like Ser/Thr kinases%2C and in prokaryotic dehydrogenases.%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93547.1;transl_table=11
AM406670.1	EMBL	gene	997232	998560	.	+	.	ID=gene943;Name=engA;gbkey=Gene;gene=engA;gene_biotype=protein_coding;locus_tag=azo0931
AM406670.1	EMBL	CDS	997232	998560	.	+	0	ID=cds929;Parent=gene943;Dbxref=EnsemblGenomes-Gn:azo0931,EnsemblGenomes-Tr:CAL93548,GOA:A1K3Z3,InterPro:IPR003593,InterPro:IPR005225,InterPro:IPR006073,InterPro:IPR015946,InterPro:IPR016484,InterPro:IPR027417,NCBI_GP:CAL93548.1;Name=CAL93548.1;Note=GTP-binding protein engA. SPROT:Q8Y026: 65%25 identity%2C 78%25 similarity. GTPase of unknown physiological role. InterPro: GTP-binding protein (HSR1-related) FUNCTION: GTPase of unknown physiological role. SIMILARITY: Belongs to the era/trmE family of GTP-binding proteins. EngA subfamily InterPro:IPR003593%3B AAA_ATPase. IPR005289%3B GTP-bindding_dom. IPR006073%3B GTP1_OBG. IPR002917%3B MMR_HSR1. IPR005225%3B Small_GTP. Pfam: PF01926%3B MMR_HSR1%3B 1. thdF: tRNA modification GTPase TrmE No signal peptide. Absence of transmembrane helices%3B~Specificity unclear;gbkey=CDS;gene=engA;product=probable GTP-binding protein;protein_id=CAL93548.1;transl_table=11
AM406670.1	EMBL	gene	998667	998909	.	+	.	ID=gene944;Name=hfq;gbkey=Gene;gene=hfq;gene_biotype=protein_coding;locus_tag=azo0932
AM406670.1	EMBL	CDS	998667	998909	.	+	0	ID=cds930;Parent=gene944;Dbxref=EnsemblGenomes-Gn:azo0932,EnsemblGenomes-Tr:CAL93549,GOA:A1K3Z4,InterPro:IPR001163,InterPro:IPR005001,InterPro:IPR010920,NCBI_GP:CAL93549.1;Name=CAL93549.1;Note=Hfq protein. RNA-binding protein that stimulates the elongation of poly(A) tails (By similarity). TREMBL:Q7NS93: 87%25 identity%2C 94%25 similarity InterPro:IPR005001%3B Hfq. IPR001163%3B snRNP_Sm. Pfam: PF01423%3B LSM No transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;gene=hfq;product=RNA-binding regulatory protein;protein_id=CAL93549.1;transl_table=11
AM406670.1	EMBL	gene	998991	1000130	.	+	.	ID=gene945;Name=hflX1;gbkey=Gene;gene=hflX1;gene_biotype=protein_coding;locus_tag=azo0933
AM406670.1	EMBL	CDS	998991	1000130	.	+	0	ID=cds931;Parent=gene945;Dbxref=EnsemblGenomes-Gn:azo0933,EnsemblGenomes-Tr:CAL93550,GOA:A1K3Z5,InterPro:IPR006073,InterPro:IPR016496,InterPro:IPR025121,InterPro:IPR027417,UniProtKB/TrEMBL:A1K3Z5,NCBI_GP:CAL93550.1;Name=CAL93550.1;Note=GTP-binding protein hflX. trembl:Q7NS94: 66%25 identity%3B 78%25 similarity. InterPro:IPR006073%3B GTP1_OBG. These proteins contain GTP-binding motifs and are GTP1OBG Pfam:MMR_HSR1:GTPase of unknown function thdF: tRNA modification GTPase TrmE No Signal peptide present (SignalP predicted) Absence of transmembrane helices (TMHMM predicted)%3B~Family membership;gbkey=CDS;gene=hflX1;product=probable GTP-binding subunit of protease specific for phage lambda;protein_id=CAL93550.1;transl_table=11
AM406670.1	EMBL	gene	1000148	1001389	.	+	.	ID=gene946;Name=hflK;gbkey=Gene;gene=hflK;gene_biotype=protein_coding;locus_tag=azo0934
AM406670.1	EMBL	CDS	1000148	1001389	.	+	0	ID=cds932;Parent=gene946;Dbxref=EnsemblGenomes-Gn:azo0934,EnsemblGenomes-Tr:CAL93551,GOA:A1K3Z6,InterPro:IPR001107,InterPro:IPR001972,InterPro:IPR010201,InterPro:IPR020980,UniProtKB/TrEMBL:A1K3Z6,NCBI_GP:CAL93551.1;Name=CAL93551.1;Note=Putative HflK protein. Homology to hflK of E. coli of 40%25 (sprot|HFLK_ECOLI). hflc and hflk govern the stability of phage lambda cii protein and have been proposed to encode or regulate a cii- specific protease. Pfam: SPFH domain/band 7 family no signal peptide 1 TMH%3B~Family membership;gbkey=CDS;gene=hflK;product=putative Hflk protein;protein_id=CAL93551.1;transl_table=11
AM406670.1	EMBL	gene	1001389	1002270	.	+	.	ID=gene947;Name=hflC;gbkey=Gene;gene=hflC;gene_biotype=protein_coding;locus_tag=azo0935
AM406670.1	EMBL	CDS	1001389	1002270	.	+	0	ID=cds933;Parent=gene947;Dbxref=EnsemblGenomes-Gn:azo0935,EnsemblGenomes-Tr:CAL93552,GOA:A1K3Z7,InterPro:IPR001107,InterPro:IPR001972,InterPro:IPR010200,UniProtKB/TrEMBL:A1K3Z7,NCBI_GP:CAL93552.1;Name=CAL93552.1;Note=Conserved hypothetical protein. Homology to hflC of E. coli of 37%25 (sprot|HFLC_ECOLI). hflc and hflk govern the stability of phage lambda cii protein and have been proposed to encode or regulate a cii- specific protease. Pfam: SPFH domain/ Band 7 family signal peptide%3B~Family membership;gbkey=CDS;gene=hflC;product=conserved hypothetical protein HflC;protein_id=CAL93552.1;transl_table=11
AM406670.1	EMBL	gene	1002278	1002463	.	+	.	ID=gene948;Name=azo0936;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0936
AM406670.1	EMBL	CDS	1002278	1002463	.	+	0	ID=cds934;Parent=gene948;Dbxref=EnsemblGenomes-Gn:azo0936,EnsemblGenomes-Tr:CAL93553,InterPro:IPR019201,UniProtKB/TrEMBL:A1K3Z8,NCBI_GP:CAL93553.1;Name=CAL93553.1;Note=Conserved hypothetical membrane protein. Homology to NE1283 of Nitrosomonas europaea of 60%25 (trembl|Q82V27). No domains predicted. Signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93553.1;transl_table=11
AM406670.1	EMBL	gene	1002471	1003625	.	+	.	ID=gene949;Name=hisZ;gbkey=Gene;gene=hisZ;gene_biotype=protein_coding;locus_tag=azo0937
AM406670.1	EMBL	CDS	1002471	1003625	.	+	0	ID=cds935;Parent=gene949;Dbxref=EnsemblGenomes-Gn:azo0937,EnsemblGenomes-Tr:CAL93554,GOA:A1K3Z9,InterPro:IPR004516,InterPro:IPR004517,NCBI_GP:CAL93554.1;Name=CAL93554.1;Note=Conserved hypothetical ATP phosphoribosyltransferase regulatory subunit Homology to hisZ of R. solanacearum of 57%25 (sprot|HISZ_RALSO). May allow the regulation of ATP phosphoribosyltransferase activity by histidine (By similarity). Tigrfam: hisS_second: histidyl-tRNA synthetase 2%2C putative no TNHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hisZ;product=conserved hypothetical ATP phosphoribosyltransferase regulatory subunit;protein_id=CAL93554.1;transl_table=11
AM406670.1	EMBL	gene	1003629	1004939	.	+	.	ID=gene950;Name=purA;gbkey=Gene;gene=purA;gene_biotype=protein_coding;locus_tag=azo0938
AM406670.1	EMBL	CDS	1003629	1004939	.	+	0	ID=cds936;Parent=gene950;Dbxref=EnsemblGenomes-Gn:azo0938,EnsemblGenomes-Tr:CAL93555,GOA:A1K400,InterPro:IPR001114,InterPro:IPR018220,InterPro:IPR027417,NCBI_GP:CAL93555.1;Name=CAL93555.1;Note=Adenylosuccinate synthetase (IMP--aspartate ligase) (AdSS) (AMPSase). InterPro: Adenylosuccinate synthetase%3B~High confidence in function and specificity;gbkey=CDS;gene=purA;product=adenylosuccinate synthase;protein_id=CAL93555.1;transl_table=11
AM406670.1	EMBL	gene	1005095	1005179	.	-	.	ID=gene951;Name=tRNA-Leu;gbkey=Gene;gene=tRNA-Leu;gene_biotype=tRNA;locus_tag=azo_tRNA_0011
AM406670.1	EMBL	tRNA	1005095	1005179	.	-	.	ID=rna14;Parent=gene951;anticodon=(pos:complement(1005143..1005145));gbkey=tRNA;gene=tRNA-Leu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Leu
AM406670.1	EMBL	exon	1005095	1005179	.	-	.	ID=id15;Parent=rna14;anticodon=(pos:complement(1005143..1005145));gbkey=tRNA;gene=tRNA-Leu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Leu
AM406670.1	EMBL	gene	1005353	1005437	.	-	.	ID=gene952;Name=tRNA-Leu;gbkey=Gene;gene=tRNA-Leu;gene_biotype=tRNA;locus_tag=azo_tRNA_0012
AM406670.1	EMBL	tRNA	1005353	1005437	.	-	.	ID=rna15;Parent=gene952;anticodon=(pos:complement(1005401..1005403));gbkey=tRNA;gene=tRNA-Leu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Leu
AM406670.1	EMBL	exon	1005353	1005437	.	-	.	ID=id16;Parent=rna15;anticodon=(pos:complement(1005401..1005403));gbkey=tRNA;gene=tRNA-Leu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Leu
AM406670.1	EMBL	gene	1005674	1008655	.	+	.	ID=gene953;Name=vacB;gbkey=Gene;gene=vacB;gene_biotype=protein_coding;locus_tag=azo0939
AM406670.1	EMBL	CDS	1005674	1008655	.	+	0	ID=cds937;Parent=gene953;Dbxref=EnsemblGenomes-Gn:azo0939,EnsemblGenomes-Tr:CAL93556,GOA:A1K401,InterPro:IPR003029,InterPro:IPR004476,InterPro:IPR011129,InterPro:IPR011805,InterPro:IPR012340,InterPro:IPR013223,InterPro:IPR022966,InterPro:IPR022967,UniProtKB/TrEMBL:A1K401,NCBI_GP:CAL93556.1;Name=CAL93556.1;Note=Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein homolog). 3-exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A) poly(U) and ribosomal RNAs. Similar to SWISSPROT: sprot|RNR_ECOLI (38%25 Escherichia coli%2C ribonuclease R%3B RNase R / VacB protein) InterPro: IPR004476 3_prime_RNase. IPR003029 RNA binding S1. Pfam: PF00773 RNB-like protein. TIGRFAM: TIGR00358 VacB and RNase II family 3'-5' exoribonucleases.%3B~High confidence in function and specificity;gbkey=CDS;gene=vacB;product=exoribonuclease II;protein_id=CAL93556.1;transl_table=11
AM406670.1	EMBL	gene	1008648	1009412	.	+	.	ID=gene954;Name=azo0940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0940
AM406670.1	EMBL	CDS	1008648	1009412	.	+	0	ID=cds938;Parent=gene954;Dbxref=EnsemblGenomes-Gn:azo0940,EnsemblGenomes-Tr:CAL93557,GOA:A1K402,InterPro:IPR001537,InterPro:IPR004441,InterPro:IPR013123,InterPro:IPR024915,InterPro:IPR029026,InterPro:IPR029028,InterPro:IPR029064,UniProtKB/TrEMBL:A1K402,NCBI_GP:CAL93557.1;Name=CAL93557.1;Note=Specificity unclear;gbkey=CDS;product=tRNA/rRNA methyltransferase;protein_id=CAL93557.1;transl_table=11
AM406670.1	EMBL	gene	1009579	1010880	.	+	.	ID=gene955;Name=azo0941;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0941
AM406670.1	EMBL	CDS	1009579	1010880	.	+	0	ID=cds939;Parent=gene955;Dbxref=EnsemblGenomes-Gn:azo0941,EnsemblGenomes-Tr:CAL93558,GOA:A1K403,InterPro:IPR005561,InterPro:IPR010910,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR013587,UniProtKB/TrEMBL:A1K403,NCBI_GP:CAL93558.1;Name=CAL93558.1;Note=Probable nitrate regulatory protein%2C%3B~High confidence in function and specificity;gbkey=CDS;product=probable nitrate regulatory protein;protein_id=CAL93558.1;transl_table=11
AM406670.1	EMBL	gene	1011215	1012474	.	+	.	ID=gene956;Name=nasF;gbkey=Gene;gene=nasF;gene_biotype=protein_coding;locus_tag=azo0942
AM406670.1	EMBL	CDS	1011215	1012474	.	+	0	ID=cds940;Parent=gene956;Dbxref=EnsemblGenomes-Gn:azo0942,EnsemblGenomes-Tr:CAL93559,InterPro:IPR006311,InterPro:IPR019546,UniProtKB/TrEMBL:A1K404,NCBI_GP:CAL93559.1;Name=CAL93559.1;Note=Part of the ABC transporter complex NasFED involved in nitrate import. 59%25 Similar to the putative periplasmic-binding protein NasF in Klebsiella oxytoca. TREMBL:Q48466 InterPro:IPR010067%3B SsuA_fam.IPR006311%3B Tat. TIGRFAMs:TIGR01728%3B SsuA_fam%3B 1.TIGR01409%3B TAT_signal_seq%3B 1. Signal peptide present.%3B~High confidence in function and specificity;gbkey=CDS;gene=nasF;product=nitrate transport system%2C periplasmic-binding protein;protein_id=CAL93559.1;transl_table=11
AM406670.1	EMBL	gene	1012491	1013423	.	+	.	ID=gene957;Name=nasE;gbkey=Gene;gene=nasE;gene_biotype=protein_coding;locus_tag=azo0943
AM406670.1	EMBL	CDS	1012491	1013423	.	+	0	ID=cds941;Parent=gene957;Dbxref=EnsemblGenomes-Gn:azo0943,EnsemblGenomes-Tr:CAL93560,GOA:A1K405,InterPro:IPR000515,InterPro:IPR005889,UniProtKB/TrEMBL:A1K405,NCBI_GP:CAL93560.1;Name=CAL93560.1;Note=Nitrate transport permease protein nasE. 41%25 Similar to the nitrate permease protein%2C nrtB in Synechococcus sp.Part of the ABC transporter complex nrtBCD involved in nitrate import.Probably responsible for the translocation of the substrate across the membrane. SWISSPROT:NRTB_SYNP7.P38044. InterPro:IPR000515%3B BPD_transp.IPR005889%3B NtrB. Pfam:PF00528%3B BPD_transp%3B 1. TIGRFAMs:TIGR01183%3B ntrB%3B 1. TMHelix: 4.%3B~High confidence in function and specificity;gbkey=CDS;gene=nasE;product=putative nitrate transport system%2C permease protein;protein_id=CAL93560.1;transl_table=11
AM406670.1	EMBL	gene	1013436	1014230	.	+	.	ID=gene958;Name=nasD;gbkey=Gene;gene=nasD;gene_biotype=protein_coding;locus_tag=azo0944
AM406670.1	EMBL	CDS	1013436	1014230	.	+	0	ID=cds942;Parent=gene958;Dbxref=EnsemblGenomes-Gn:azo0944,EnsemblGenomes-Tr:CAL93561,GOA:A1K406,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005890,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K406,NCBI_GP:CAL93561.1;Name=CAL93561.1;Note=Part of the ABC transporter complex nasFED involved in nitrate import. 64%25 Similar to the nitrate transport membrane protein%2C nasD in Klebsella oxytoca. Probably responsible for energy coupling to the transport system. SWISSPROT:NASD_KLEOX.P39459. InterPro:IPR003593%3B AAA_ATPase.IPR003439%3B ABC_transporter.IPR005890%3B NtrCD. Pfam:PF00005%3B ABC_tran%3B 1. TIGRFAMs:TIGR01184%3B ntrCD%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=nasD;product=putative nitrate transport system%2C ATP-binding protein;protein_id=CAL93561.1;transl_table=11
AM406670.1	EMBL	gene	1014601	1015365	.	+	.	ID=gene959;Name=cobA1;gbkey=Gene;gene=cobA1;gene_biotype=protein_coding;locus_tag=azo0945
AM406670.1	EMBL	CDS	1014601	1015365	.	+	0	ID=cds943;Parent=gene959;Dbxref=EnsemblGenomes-Gn:azo0945,EnsemblGenomes-Tr:CAL93562,GOA:A1K407,InterPro:IPR000878,InterPro:IPR003043,InterPro:IPR006366,InterPro:IPR014776,InterPro:IPR014777,UniProtKB/TrEMBL:A1K407,NCBI_GP:CAL93562.1;Name=CAL93562.1;Note=Uroporphyrin-III C-methyltransferase (EC 2.1.1.107) (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM). CATALYZES BOTH METHYLATIONS AT C-2 AND C-7 OF UROGEN III LEADING TO PRECORRIN-1 AND PRECORRIN-2%3B THEIR OXIDATIVE ESTERIFICATION GIVES RESPECTIVELY FACTOR I OCTAMETHYL ESTER AND SIROHYDROCHLORIN (BY SIMILARITY). dph5: diphthine synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=cobA1;product=Uroporphyrin-III C-methyltransferase.;protein_id=CAL93562.1;transl_table=11
AM406670.1	EMBL	gene	1015380	1016627	.	+	.	ID=gene960;Name=nasC;gbkey=Gene;gene=nasC;gene_biotype=protein_coding;locus_tag=azo0946
AM406670.1	EMBL	CDS	1015380	1016627	.	+	0	ID=cds944;Parent=gene960;Dbxref=EnsemblGenomes-Gn:azo0946,EnsemblGenomes-Tr:CAL93563,GOA:A1K408,InterPro:IPR001327,InterPro:IPR013027,InterPro:IPR023753,UniProtKB/TrEMBL:A1K408,NCBI_GP:CAL93563.1;Name=CAL93563.1;Note=Putative nitrate reducatse small subunit. Homology to nasC of K. oxytoca of 38%25 (trembl|Q48467). NasC probably mediates electron transfer from NADH to NasA%2C the nitrate reductase. InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disulfide oxidoreductase no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=nasC;product=putative nitrate reductase small subunit;protein_id=CAL93563.1;transl_table=11
AM406670.1	EMBL	gene	1016664	1019438	.	+	.	ID=gene961;Name=nasA;gbkey=Gene;gene=nasA;gene_biotype=protein_coding;locus_tag=azo0947
AM406670.1	EMBL	CDS	1016664	1019438	.	+	0	ID=cds945;Parent=gene961;Dbxref=EnsemblGenomes-Gn:azo0947,EnsemblGenomes-Tr:CAL93564,GOA:A1K409,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR007419,InterPro:IPR009010,UniProtKB/TrEMBL:A1K409,NCBI_GP:CAL93564.1;Name=CAL93564.1;Note=Probable Nitrate reductase. Homology to nasA of K. oxytoca of 41%25 (sprot|NASA_KLEOX). Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants fungi and bacteria. InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655) Pfam: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain no signal peptide no TMH Helixturnhelix motif%3B~High confidence in function and specificity;gbkey=CDS;gene=nasA;product=probable nitrate reductase;protein_id=CAL93564.1;transl_table=11
AM406670.1	EMBL	gene	1019477	1020664	.	+	.	ID=gene962;Name=azo0948;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0948
AM406670.1	EMBL	CDS	1019477	1020664	.	+	0	ID=cds946;Parent=gene962;Dbxref=EnsemblGenomes-Gn:azo0948,EnsemblGenomes-Tr:CAL93565,GOA:A1K410,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,UniProtKB/TrEMBL:A1K410,NCBI_GP:CAL93565.1;Name=CAL93565.1;Note=Putative methyl-accepting chemotaxis protein%2C%3B~Specificity unclear;gbkey=CDS;product=putative methyl-accepting chemotaxis protein;protein_id=CAL93565.1;transl_table=11
AM406670.1	EMBL	gene	1020736	1021629	.	+	.	ID=gene963;Name=azo0949;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0949
AM406670.1	EMBL	CDS	1020736	1021629	.	+	0	ID=cds947;Parent=gene963;Dbxref=EnsemblGenomes-Gn:azo0949,EnsemblGenomes-Tr:CAL93566,InterPro:IPR013587,UniProtKB/TrEMBL:A1K411,NCBI_GP:CAL93566.1;Name=CAL93566.1;Note=Conserved hypothetical secreted protein. Homology to Daro03002329 of Dechloromonas aromatica of 40%25 (gi|53730441|ref|ZP_00348795.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93566.1;transl_table=11
AM406670.1	EMBL	gene	1021632	1023464	.	+	.	ID=gene964;Name=azo0950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0950
AM406670.1	EMBL	CDS	1021632	1023464	.	+	0	ID=cds948;Parent=gene964;Dbxref=EnsemblGenomes-Gn:azo0950,EnsemblGenomes-Tr:CAL93567,GOA:A1K412,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR029787,UniProtKB/TrEMBL:A1K412,NCBI_GP:CAL93567.1;Name=CAL93567.1;Note=GGEF/EAL/PAS/PAC-domain containing protein;gbkey=CDS;product=GGEF/EAL/PAS/PAC-domain containing protein;protein_id=CAL93567.1;transl_table=11
AM406670.1	EMBL	gene	1023516	1023875	.	+	.	ID=gene965;Name=azo0951;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0951
AM406670.1	EMBL	CDS	1023516	1023875	.	+	0	ID=cds949;Parent=gene965;Dbxref=EnsemblGenomes-Gn:azo0951,EnsemblGenomes-Tr:CAL93568,GOA:A1K413,InterPro:IPR011051,InterPro:IPR013096,InterPro:IPR014710,UniProtKB/TrEMBL:A1K413,NCBI_GP:CAL93568.1;Name=CAL93568.1;Note=50%25Cupin.IPR007113%3B Cupin_sup. Pfam:PF00190%3B Cupin%3B 1. 28%25;gbkey=CDS;product=conserved hypothetical phosphomannose protein;protein_id=CAL93568.1;transl_table=11
AM406670.1	EMBL	gene	1024028	1024933	.	+	.	ID=gene966;Name=azo0952;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0952
AM406670.1	EMBL	CDS	1024028	1024933	.	+	0	ID=cds950;Parent=gene966;Dbxref=EnsemblGenomes-Gn:azo0952,EnsemblGenomes-Tr:CAL93569,GOA:A1K414,InterPro:IPR007560,InterPro:IPR011335,InterPro:IPR011856,InterPro:IPR013498,UniProtKB/TrEMBL:A1K414,NCBI_GP:CAL93569.1;Name=CAL93569.1;Note=Conserved hypothetical protein%2C 38%25 identity (50%25 similarity) to TrEMBL%3BQ7WXG4 Signal Peptide Present.TMH not Present. Has PF04471:Restriction endonuclease%3B(IPR007560:Mrr_cat):Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA. PF01396:Topoisomerase DNA binding C4 zinc finger%3B(IPR000380 DNA_tpisomrase):Prokaryotic topoisomerase I %2C otherwise known as relaxing enzyme%2Cuntwisting enzyme or swivelase%2C catalyses the ATP-independent breakage of single- stranded DNA%2C followed by passage and rejoining of another single-stranded DNA region [4]. This reaction brings about the conversion of one topological isomer of DNA into another: e.g.%2Crelaxation of superhelical turns%3B interconversion of simple and knotted rings of single-stranded DNA%3B and intertwisting of single-stranded rings of complementary sequences.%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93569.1;transl_table=11
AM406670.1	EMBL	gene	1024961	1025785	.	-	.	ID=gene967;Name=nfsA;gbkey=Gene;gene=nfsA;gene_biotype=protein_coding;locus_tag=azo0953
AM406670.1	EMBL	CDS	1024961	1025785	.	-	0	ID=cds951;Parent=gene967;Dbxref=EnsemblGenomes-Gn:azo0953,EnsemblGenomes-Tr:CAL93570,GOA:A1K415,InterPro:IPR000415,InterPro:IPR016446,InterPro:IPR029479,UniProtKB/TrEMBL:A1K415,NCBI_GP:CAL93570.1;Name=CAL93570.1;Note=Putative oxygen-insensitive NADPH nitroreductase. Homology to snrA of S. typhimurium of 37%25 (sprot|NFSA_SALTY) REDUCTION OF NITROAROMATIC COMPOUNDS USING NADH. REDUCES NITROFURAZONE BY A PING-PONG BI-BI MECHANISM POSSIBLY TO GENERATE A TWO-ELECTRON TRANSFER PRODUCT. MAJOR COMPONENT OF THE OXYGEN- INSENSITIVE NITROREDUCTASE ACTIVITY IN E.COLI. Pfam: Nitroreductase family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=nfsA;product=putative oxygen-insentive NADPH nitroreductase;protein_id=CAL93570.1;transl_table=11
AM406670.1	EMBL	gene	1025891	1026424	.	-	.	ID=gene968;Name=isiB;gbkey=Gene;gene=isiB;gene_biotype=protein_coding;locus_tag=azo0954
AM406670.1	EMBL	CDS	1025891	1026424	.	-	0	ID=cds952;Parent=gene968;Dbxref=EnsemblGenomes-Gn:azo0954,EnsemblGenomes-Tr:CAL93571,GOA:A1K416,InterPro:IPR001094,InterPro:IPR001226,InterPro:IPR008254,InterPro:IPR010086,InterPro:IPR029039,UniProtKB/TrEMBL:A1K416,NCBI_GP:CAL93571.1;Name=CAL93571.1;Note=Probable flavodoxin. Homology to isiB of Synechococcus sp. of 45%25 (pir|B47673) Flavodoxins are electron-transfer proteins that function in various electron transport systems. Flavodoxins bind one FMN molecule%2C which serves as a redox-active prosthetic group and are functionally interchangeable with ferredoxins. Pfam: Flavodoxin no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=isiB;product=probable flavodoxin;protein_id=CAL93571.1;transl_table=11
AM406670.1	EMBL	gene	1026770	1027678	.	-	.	ID=gene969;Name=gufA;gbkey=Gene;gene=gufA;gene_biotype=protein_coding;locus_tag=azo0955
AM406670.1	EMBL	CDS	1026770	1027678	.	-	0	ID=cds953;Parent=gene969;Dbxref=EnsemblGenomes-Gn:azo0955,EnsemblGenomes-Tr:CAL93572,GOA:A1K417,InterPro:IPR003689,UniProtKB/TrEMBL:A1K417,NCBI_GP:CAL93572.1;Name=CAL93572.1;Note=Putative GufA protein. 31%25 Zn_transpt_Zip.InterPro: ZIP Zinc transporter Pfam: PF02535%3B Zip%3B 1. TMHelix: 9. Signal peptide present.%3B~Specificity unclear;gbkey=CDS;gene=gufA;product=putative cation transporter protein;protein_id=CAL93572.1;transl_table=11
AM406670.1	EMBL	gene	1027781	1029013	.	-	.	ID=gene970;Name=cfa1;gbkey=Gene;gene=cfa1;gene_biotype=protein_coding;locus_tag=azo0956
AM406670.1	EMBL	CDS	1027781	1029013	.	-	0	ID=cds954;Parent=gene970;Dbxref=EnsemblGenomes-Gn:azo0956,EnsemblGenomes-Tr:CAL93573,GOA:A1K418,InterPro:IPR003333,InterPro:IPR029063,UniProtKB/TrEMBL:A1K418,NCBI_GP:CAL93573.1;Name=CAL93573.1;Note=Probable cyclopropane-fatty-acyl-phospholipid synthase. Homology to cfa of E. coli of 54%25 (Sprot:CFA_ECOLI) TRANSFERS A METHYLENE GROUP FROM S-ADENOSYL-L-METHIONINE TO THE CIS DOUBLE BOND OF AN UNSATURATED FATTY ACID CHAIN RESULTING IN THE REPLACEMENT OF THE DOUBLE BOND WITH A METHYLENE BRIDGE. Pfam: Cyclopropane-fatty-acyl-phosphotlipid no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=cfa1;product=probable cyclopropane-fatty-acyl-phospholipid synthase;protein_id=CAL93573.1;transl_table=11
AM406670.1	EMBL	gene	1029315	1031303	.	+	.	ID=gene971;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;locus_tag=azo0957
AM406670.1	EMBL	CDS	1029315	1031303	.	+	0	ID=cds955;Parent=gene971;Dbxref=EnsemblGenomes-Gn:azo0957,EnsemblGenomes-Tr:CAL93574,GOA:A1K419,InterPro:IPR003593,InterPro:IPR008921,InterPro:IPR012763,InterPro:IPR022754,InterPro:IPR027417,UniProtKB/TrEMBL:A1K419,NCBI_GP:CAL93574.1;Name=CAL93574.1;Note=DNA polymerase III subunit tau (EC 2.7.7.7) [Contains: DNA polymerase III subunit gamma]. The gamma chain seems to interact with the delta subunit to transfer the beta subunit on the DNA. InterPro: AAA-protein (ATPases associated with various cellular activities)%3B~High confidence in function and specificity;gbkey=CDS;gene=dnaX;product=DNA polymerase III subunit Tau;protein_id=CAL93574.1;transl_table=11
AM406670.1	EMBL	gene	1031349	1031678	.	+	.	ID=gene972;Name=azo0958;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0958
AM406670.1	EMBL	CDS	1031349	1031678	.	+	0	ID=cds956;Parent=gene972;Dbxref=EnsemblGenomes-Gn:azo0958,EnsemblGenomes-Tr:CAL93575,GOA:A1K420,InterPro:IPR004401,UniProtKB/TrEMBL:A1K420,NCBI_GP:CAL93575.1;Name=CAL93575.1;Note=conserved hypothetical protein Pfam: Uncharacterized BCR%2C YbaB family;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93575.1;transl_table=11
AM406670.1	EMBL	gene	1031759	1032358	.	+	.	ID=gene973;Name=azo0959;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0959
AM406670.1	EMBL	CDS	1031759	1032358	.	+	0	ID=cds957;Parent=gene973;Dbxref=EnsemblGenomes-Gn:azo0959,EnsemblGenomes-Tr:CAL93576,GOA:A1K421,InterPro:IPR000093,InterPro:IPR006171,InterPro:IPR023627,InterPro:IPR023628,NCBI_GP:CAL93576.1;Name=CAL93576.1;Note=Region start changed from 1031918 to 1031759 (159 bases);gbkey=CDS;product=recombination protein RecR;protein_id=CAL93576.1;transl_table=11
AM406670.1	EMBL	gene	1032540	1033133	.	+	.	ID=gene974;Name=petA1;gbkey=Gene;gene=petA1;gene_biotype=protein_coding;locus_tag=azo0960
AM406670.1	EMBL	CDS	1032540	1033133	.	+	0	ID=cds958;Parent=gene974;Dbxref=EnsemblGenomes-Gn:azo0960,EnsemblGenomes-Tr:CAL93577,GOA:A1K422,InterPro:IPR005805,InterPro:IPR006311,InterPro:IPR006317,InterPro:IPR014349,InterPro:IPR017941,InterPro:IPR019470,UniProtKB/TrEMBL:A1K422,NCBI_GP:CAL93577.1;Name=CAL93577.1;Note=Probable ubiquinol-cytochrome c reductase iron-sulfur protein (Rieske iron-sulfur protein) (RISP). Homology to petA of R. gelantinosus of 63%25 (trembl|Q93SY7). Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. Pfam: Rieske [2Fe-2S] domain singal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=petA1;product=probable ubiquinol-cytochrome c reductase iron-sulfur protein;protein_id=CAL93577.1;transl_table=11
AM406670.1	EMBL	gene	1033137	1034405	.	+	.	ID=gene975;Name=petB;gbkey=Gene;gene=petB;gene_biotype=protein_coding;locus_tag=azo0961
AM406670.1	EMBL	CDS	1033137	1034405	.	+	0	ID=cds959;Parent=gene975;Dbxref=EnsemblGenomes-Gn:azo0961,EnsemblGenomes-Tr:CAL93578,GOA:A1K423,InterPro:IPR005797,InterPro:IPR005798,InterPro:IPR016174,InterPro:IPR027387,UniProtKB/TrEMBL:A1K423,NCBI_GP:CAL93578.1;Name=CAL93578.1;Note=Ubiquinol-cytochrome c reductase cytochrome b protein. Homology to petB of R. gelatinosus of 72%25 (trembl|Q93SY6). Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity). Pfam: Cytochrome b (N-terminal)/b6/petB%3B cytochrome b (C-terminal)/b6/petD no signal peptide 10 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=petB;product=ubiquinol-cytochrome c reductase cytochrome b protein;protein_id=CAL93578.1;transl_table=11
AM406670.1	EMBL	gene	1034402	1035157	.	+	.	ID=gene976;Name=petC;gbkey=Gene;gene=petC;gene_biotype=protein_coding;locus_tag=azo0962
AM406670.1	EMBL	CDS	1034402	1035157	.	+	0	ID=cds960;Parent=gene976;Dbxref=EnsemblGenomes-Gn:azo0962,EnsemblGenomes-Tr:CAL93579,GOA:A1K424,InterPro:IPR002326,InterPro:IPR009056,UniProtKB/TrEMBL:A1K424,NCBI_GP:CAL93579.1;Name=CAL93579.1;Note=Conserved hypothetical ubiquinol-cytochrome c reductase cytochrome c1 protein. Homology to petC of R. solanacearum of 52%25 (trembl|Q8XVA4). Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. c1 functions as an electron donor to cytochrome c. InterPro: Cytochrome c1 (IPR002326) Pfam: Cytochrome_c1 signal peptide 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;gene=petC;product=conserved hypothetical ubiquinol-cytochrome c reductase cytochrome c1 protein;protein_id=CAL93579.1;transl_table=11
AM406670.1	EMBL	gene	1035265	1035861	.	+	.	ID=gene977;Name=sspA2;gbkey=Gene;gene=sspA2;gene_biotype=protein_coding;locus_tag=azo0963
AM406670.1	EMBL	CDS	1035265	1035861	.	+	0	ID=cds961;Parent=gene977;Dbxref=EnsemblGenomes-Gn:azo0963,EnsemblGenomes-Tr:CAL93580,InterPro:IPR004045,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:A1K425,NCBI_GP:CAL93580.1;Name=CAL93580.1;Note=Probable Stringent starvation protein A. Homology to sspA of E. coli of 43%25 (sprot|SSPA_ECOLI). FORMS AN EQUIMOLAR COMPLEX WITH THE RNA POLYMERASE HOLOENZYME (RNAP) BUT NOT WITH THE CORE ENZYME. IT IS SYNTHESIZED PREDOMINANTLY WHEN CELLS ARE EXPOSED TO AMINO ACID STARVATION AT WHICH TIME IT ACCOUNTS FOR OVER 50%25 OF THE TOTAL PROTEIN SYNTHESIZED. Pfam: Glutatione S-transferase%2CN-terminale domaine no TMHs%3B~Family membership;gbkey=CDS;gene=sspA2;product=probable stringent starvation protein A;protein_id=CAL93580.1;transl_table=11
AM406670.1	EMBL	gene	1035915	1036355	.	+	.	ID=gene978;Name=sspB;gbkey=Gene;gene=sspB;gene_biotype=protein_coding;locus_tag=azo0964
AM406670.1	EMBL	CDS	1035915	1036355	.	+	0	ID=cds962;Parent=gene978;Dbxref=EnsemblGenomes-Gn:azo0964,EnsemblGenomes-Tr:CAL93581,InterPro:IPR007481,UniProtKB/TrEMBL:A1K426,NCBI_GP:CAL93581.1;Name=CAL93581.1;Note=Putative stringent starvation protein B. Homology to sspB of E. coli of 38%25 (sprot|SSPB_ECOLI) Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known. Pfam: Stringent starvation protein B no signal peptide no TMHs;gbkey=CDS;gene=sspB;product=putative stringent starvation protein B;protein_id=CAL93581.1;transl_table=11
AM406670.1	EMBL	gene	1036339	1037562	.	-	.	ID=gene979;Name=azo0965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0965
AM406670.1	EMBL	CDS	1036339	1037562	.	-	0	ID=cds963;Parent=gene979;Dbxref=EnsemblGenomes-Gn:azo0965,EnsemblGenomes-Tr:CAL93582,GOA:A1K427,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:A1K427,NCBI_GP:CAL93582.1;Name=CAL93582.1;Note=InterPro: Glycosyl transferases group 1%3B~Family membership;gbkey=CDS;product=glycosyltransferase;protein_id=CAL93582.1;transl_table=11
AM406670.1	EMBL	gene	1037729	1038217	.	+	.	ID=gene980;Name=azo0966;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0966
AM406670.1	EMBL	CDS	1037729	1038217	.	+	0	ID=cds964;Parent=gene980;Dbxref=EnsemblGenomes-Gn:azo0966,EnsemblGenomes-Tr:CAL93583,GOA:A1K428,InterPro:IPR012312,InterPro:IPR012827,UniProtKB/TrEMBL:A1K428,NCBI_GP:CAL93583.1;Name=CAL93583.1;Note=Hemerythrin-like protein%2C 49%25 Identity to SProt%3BQ8Y1B3. Has PF01814%2C Hemerythrin HHE cation binding domain%3B IPR002063%2C Hemerythrin%3B Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance%2C in Nereis diversicolor P80255 binds Cadmium so as to protect the organism from toxicity . However Hemerythrin is classically described as Oxygen-binding through two attached Fe2+ ions. And the bacterial Q7WX96 is a regulator of response to NO%2C which suggests yet another set-up for its metal ligands. In Staphylococcus aureus P72360 has been noted to be important when the organism switches to living in environments with low oxygen concentrations%3B perhaps this protein acts as an oxygen store or scavenger.;gbkey=CDS;product=Hemerythrin-like protein;protein_id=CAL93583.1;transl_table=11
AM406670.1	EMBL	gene	1038235	1039485	.	-	.	ID=gene981;Name=dadA1;gbkey=Gene;gene=dadA1;gene_biotype=protein_coding;locus_tag=azo0967
AM406670.1	EMBL	CDS	1038235	1039485	.	-	0	ID=cds965;Parent=gene981;Dbxref=EnsemblGenomes-Gn:azo0967,EnsemblGenomes-Tr:CAL93584,GOA:A1K429,InterPro:IPR006076,UniProtKB/TrEMBL:A1K429,NCBI_GP:CAL93584.1;Name=CAL93584.1;Note=The L-alanine catabolic pathway proceeds in two steps: racemization of the L-isomer to D-alanine by alanine racemase and oxidative deamination of D-alanine to pyruvate and ammonia by D- amino acid dehydrogenase. Similar to trembl|Q7NRT8 (52%25) and to sprot|DADA_ECOLI (40%25). Pfam (PF01266): D-amino acid oxidase%3B~Specificity unclear;gbkey=CDS;gene=dadA1;product=probable D-amino acid dehydrogenase small subunit;protein_id=CAL93584.1;transl_table=11
AM406670.1	EMBL	gene	1039663	1040664	.	+	.	ID=gene982;Name=cbbF;gbkey=Gene;gene=cbbF;gene_biotype=protein_coding;locus_tag=azo0968
AM406670.1	EMBL	CDS	1039663	1040664	.	+	0	ID=cds966;Parent=gene982;Dbxref=EnsemblGenomes-Gn:azo0968,EnsemblGenomes-Tr:CAL93585,GOA:A1K430,InterPro:IPR000146,InterPro:IPR028343,NCBI_GP:CAL93585.1;Name=CAL93585.1;Note=Fructose-16-bisphosphatase cytosolic(D-fructose-16-bisphosphate 1-phosphohydrolase) (FBPase).Involved in the reaction: D-fructose 1%2C6-bisphosphate + H(2)O %3D D-fructose 6-phosphate + phosphate.%2C 62%25 In_FB_phphtase. Pfam:PF00316%3B FBPase%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=cbbF;product=putative fructose-1%2C6-bisphosphatase;protein_id=CAL93585.1;transl_table=11
AM406670.1	EMBL	gene	1040676	1042403	.	+	.	ID=gene983;Name=azo0969;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0969
AM406670.1	EMBL	CDS	1040676	1042403	.	+	0	ID=cds967;Parent=gene983;Dbxref=EnsemblGenomes-Gn:azo0969,EnsemblGenomes-Tr:CAL93586,GOA:A1K431,InterPro:IPR000184,InterPro:IPR010827,UniProtKB/TrEMBL:A1K431,NCBI_GP:CAL93586.1;Name=CAL93586.1;Note=conserved hypothetical outer membrane protein. Homology to ne0930 of N. europaea of 44%25 (trembl|Q82VX0) Pfam: Bacterial surface protein signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical outer membrane protein;protein_id=CAL93586.1;transl_table=11
AM406670.1	EMBL	gene	1042491	1043462	.	+	.	ID=gene984;Name=azo0970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0970
AM406670.1	EMBL	CDS	1042491	1043462	.	+	0	ID=cds968;Parent=gene984;Dbxref=EnsemblGenomes-Gn:azo0970,EnsemblGenomes-Tr:CAL93587,InterPro:IPR007487,InterPro:IPR028082,UniProtKB/TrEMBL:A1K432,NCBI_GP:CAL93587.1;Name=CAL93587.1;Note=Conserved hypothetical secreted protein. Homology to bb3356 of B. bronchiseptica of 83%25 (trembl|Q7WH54). Pfam: DUF534 This is a family of putative secreted proteins of unknown function. signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93587.1;transl_table=11
AM406670.1	EMBL	gene	1043538	1044428	.	+	.	ID=gene985;Name=azo0971;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0971
AM406670.1	EMBL	CDS	1043538	1044428	.	+	0	ID=cds969;Parent=gene985;Dbxref=EnsemblGenomes-Gn:azo0971,EnsemblGenomes-Tr:CAL93588,GOA:A1K433,InterPro:IPR001851,UniProtKB/TrEMBL:A1K433,NCBI_GP:CAL93588.1;Name=CAL93588.1;Note=Conserved hypothetical ABC transporter%2C permease protein. PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM. PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE. InterPro: Binding-system dependent bacterial transporters (araH livH/limM families) (IPR001851) Pfam: Branched-chain amino acid transport system/permease component no signal peptide 8 TMHs 2A78: Carboxylate/Amino Acid/Amine Tran%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical ABC transporter%2C permease protein;protein_id=CAL93588.1;transl_table=11
AM406670.1	EMBL	gene	1044430	1045224	.	+	.	ID=gene986;Name=azo0972;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0972
AM406670.1	EMBL	CDS	1044430	1045224	.	+	0	ID=cds970;Parent=gene986;Dbxref=EnsemblGenomes-Gn:azo0972,EnsemblGenomes-Tr:CAL93589,GOA:A1K434,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K434,NCBI_GP:CAL93589.1;Name=CAL93589.1;Note=Thiamine transport ATP-binding protein thiQ. PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM TBPA-THIPQ FOR THIAMINE AND TPP. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. TREMBL:Q7WH56: 84%25 identity%2C 92%25 similarity Description:putative abc-transporter atp-binding component InterPro: IPR003593%3B AAA_ATPase. IPR003439%3B ABC_transporter. Pfam:PF00005%3B ABC_tran%3B ProDom PD000006%3B ABC_transporter%3B 1. SMART SM00382%3B AAA recf: DNA replication and repair protein NO transmembrane helices%3B~Function unclear;gbkey=CDS;product=probable ABC transporter%2C ATP-binding protein;protein_id=CAL93589.1;transl_table=11
AM406670.1	EMBL	gene	1045436	1045726	.	+	.	ID=gene987;Name=groES1;gbkey=Gene;gene=groES1;gene_biotype=protein_coding;locus_tag=azo0973
AM406670.1	EMBL	CDS	1045436	1045726	.	+	0	ID=cds971;Parent=gene987;Dbxref=EnsemblGenomes-Gn:azo0973,EnsemblGenomes-Tr:CAL93590,GOA:A1K435,InterPro:IPR011032,InterPro:IPR018369,InterPro:IPR020818,UniProtKB/TrEMBL:A1K435,NCBI_GP:CAL93590.1;Name=CAL93590.1;Note=Chaperonin GroES. Homolgy to groES of B. japonicum of 61%25 (sprot|CH11_BRAJA) Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. InterPro: Chaperonins cpn10 (10 Kd subunit)(IPR001476) Pfam: Chaperonin 10 kd subunit no signal peptide no TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=groES1;product=chaperonin GroES;protein_id=CAL93590.1;transl_table=11
AM406670.1	EMBL	gene	1045775	1047424	.	+	.	ID=gene988;Name=groEL1;gbkey=Gene;gene=groEL1;gene_biotype=protein_coding;locus_tag=azo0974
AM406670.1	EMBL	CDS	1045775	1047424	.	+	0	ID=cds972;Parent=gene988;Dbxref=EnsemblGenomes-Gn:azo0974,EnsemblGenomes-Tr:CAL93591,GOA:A1K436,InterPro:IPR001844,InterPro:IPR002423,InterPro:IPR018370,InterPro:IPR027409,InterPro:IPR027413,NCBI_GP:CAL93591.1;Name=CAL93591.1;Note=Chaperonin GroEL. Homology to groEL of B. japonicum of 62%25 (SWISSPROT:CH61_BRAJA). Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (By similarity). no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=groEL1;product=chaperonin GroEL;protein_id=CAL93591.1;transl_table=11
AM406670.1	EMBL	gene	1047710	1048396	.	+	.	ID=gene989;Name=basR;gbkey=Gene;gene=basR;gene_biotype=protein_coding;locus_tag=azo0975
AM406670.1	EMBL	CDS	1047710	1048396	.	+	0	ID=cds973;Parent=gene989;Dbxref=EnsemblGenomes-Gn:azo0975,EnsemblGenomes-Tr:CAL93592,GOA:A1K437,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K437,NCBI_GP:CAL93592.1;Name=CAL93592.1;Note=Probable two-component response regulatory protein%2CResponse_reg. IPR001867%3B Trans_reg_C. Pfam: PF00072%3B response_reg. PF00486%3B trans_reg_C. SMART: SM00448%3B REC.%3B~Specificity unclear;gbkey=CDS;gene=basR;product=probable two-component response regulatory protein;protein_id=CAL93592.1;transl_table=11
AM406670.1	EMBL	gene	1048371	1049858	.	+	.	ID=gene990;Name=basS;gbkey=Gene;gene=basS;gene_biotype=protein_coding;locus_tag=azo0976
AM406670.1	EMBL	CDS	1048371	1049858	.	+	0	ID=cds974;Parent=gene990;Dbxref=EnsemblGenomes-Gn:azo0976,EnsemblGenomes-Tr:CAL93593,GOA:A1K438,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR013727,UniProtKB/TrEMBL:A1K438,NCBI_GP:CAL93593.1;Name=CAL93593.1;Note=Putative two-component system histidine kinase%2C%3B~Specificity unclear;gbkey=CDS;gene=basS;product=putative two-component system histidine kinase;protein_id=CAL93593.1;transl_table=11
AM406670.1	EMBL	gene	1050037	1050345	.	+	.	ID=gene991;Name=azo0977;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0977
AM406670.1	EMBL	CDS	1050037	1050345	.	+	0	ID=cds975;Parent=gene991;Dbxref=EnsemblGenomes-Gn:azo0977,EnsemblGenomes-Tr:CAL93594,InterPro:IPR007436,UniProtKB/TrEMBL:A1K439,NCBI_GP:CAL93594.1;Name=CAL93594.1;Note=Conserved hypothetical membrane protein. Homology to XCC4058 of Xanthomonas campestris of 55%25 (trembl|Q8P3L3) Has PF04341%2C Protein of unknown function%2CDUF485%3B IPR007436%3BThis family includes several putative integral membrane proteins. no signal peptide 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93594.1;transl_table=11
AM406670.1	EMBL	gene	1050342	1052060	.	+	.	ID=gene992;Name=azo0978;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0978
AM406670.1	EMBL	CDS	1050342	1052060	.	+	0	ID=cds976;Parent=gene992;Dbxref=EnsemblGenomes-Gn:azo0978,EnsemblGenomes-Tr:CAL93595,GOA:A1K440,InterPro:IPR001734,InterPro:IPR018212,InterPro:IPR019900,UniProtKB/TrEMBL:A1K440,NCBI_GP:CAL93595.1;Name=CAL93595.1;Note=Conserved hypothetical sodium:solute symporter. Homology to an orf of R. capsulata of 81%25 (trembl|O68042). Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force%2C SMF) is used to drive solute accumulation against a concentration gradient. The solutes transported may be sugars%2C amino acids%2C nucleosides%2Cinositols%2C vitamins%2C urea or anions%2C depending on the system. Tigrfam: sss: SSS sodium solute transporter superfamily Pfam: Sodium:solute transporter family signal peptide 13 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical sodium:solute symporter;protein_id=CAL93595.1;transl_table=11
AM406670.1	EMBL	gene	1052174	1052845	.	-	.	ID=gene993;Name=tctD;gbkey=Gene;gene=tctD;gene_biotype=protein_coding;locus_tag=azo0979
AM406670.1	EMBL	CDS	1052174	1052845	.	-	0	ID=cds977;Parent=gene993;Dbxref=EnsemblGenomes-Gn:azo0979,EnsemblGenomes-Tr:CAL93596,GOA:A1K441,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:A1K441,NCBI_GP:CAL93596.1;Name=CAL93596.1;Note=Probable transcriptional regulatory protein%2CResponse_reg. IPR001867%3B Trans_reg_C. Pfam: PF00072%3B response_reg. PF00486%3B trans_reg_C. SMART: SM00448%3B REC. Transcriptional regulatory protein tctD. TRANSCRIPTIONAL ACTIVATOR OF THE TCTI TRICARBOXYLATE TRANSPORT SYSTEM OPERON.%3B~Specificity unclear;gbkey=CDS;gene=tctD;product=probable transcriptional regulatory protein;protein_id=CAL93596.1;transl_table=11
AM406670.1	EMBL	gene	1052967	1053042	.	+	.	ID=gene994;Name=tRNA-Phe;gbkey=Gene;gene=tRNA-Phe;gene_biotype=tRNA;locus_tag=azo_tRNA_0013
AM406670.1	EMBL	tRNA	1052967	1053042	.	+	.	ID=rna16;Parent=gene994;anticodon=(pos:1053000..1053002);gbkey=tRNA;gene=tRNA-Phe;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Phe
AM406670.1	EMBL	exon	1052967	1053042	.	+	.	ID=id17;Parent=rna16;anticodon=(pos:1053000..1053002);gbkey=tRNA;gene=tRNA-Phe;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Phe
AM406670.1	EMBL	gene	1053183	1054436	.	+	.	ID=gene995;Name=azo0980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0980
AM406670.1	EMBL	CDS	1053183	1054436	.	+	0	ID=cds978;Parent=gene995;Dbxref=EnsemblGenomes-Gn:azo0980,EnsemblGenomes-Tr:CAL93597,GOA:A1K442,InterPro:IPR000343,InterPro:IPR006151,InterPro:IPR015895,InterPro:IPR015896,InterPro:IPR016040,InterPro:IPR018214,NCBI_GP:CAL93597.1;Name=CAL93597.1;Note=Glutamyl-tRNA reductase (EC 1.2.1.-) (GluTR). catalytic activity: glutamyl-trna(glu) + nadph %3D glutamate-1- semialdehyde + nadp(+) + trna(glu). pathway: porphyrin biosynthesis by the c5 pathway%3B first step. similarity: belongs to the glutamyl-trna reductase family.%3B~High confidence in function and specificity;gbkey=CDS;product=HemA protein;protein_id=CAL93597.1;transl_table=11
AM406670.1	EMBL	gene	1054469	1055554	.	+	.	ID=gene996;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=azo0981
AM406670.1	EMBL	CDS	1054469	1055554	.	+	0	ID=cds979;Parent=gene996;Dbxref=EnsemblGenomes-Gn:azo0981,EnsemblGenomes-Tr:CAL93598,GOA:A1K443,InterPro:IPR000352,InterPro:IPR004373,InterPro:IPR005139,InterPro:IPR014720,NCBI_GP:CAL93598.1;Name=CAL93598.1;Note=Peptide chain release factor 1 (RF-1). Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.%3B~High confidence in function and specificity;gbkey=CDS;gene=prfA;product=peptide chain release factor;protein_id=CAL93598.1;transl_table=11
AM406670.1	EMBL	gene	1055551	1056387	.	+	.	ID=gene997;Name=hemK;gbkey=Gene;gene=hemK;gene_biotype=protein_coding;locus_tag=azo0982
AM406670.1	EMBL	CDS	1055551	1056387	.	+	0	ID=cds980;Parent=gene997;Dbxref=EnsemblGenomes-Gn:azo0982,EnsemblGenomes-Tr:CAL93599,GOA:A1K444,InterPro:IPR002052,InterPro:IPR004556,InterPro:IPR007848,InterPro:IPR019874,InterPro:IPR029063,UniProtKB/TrEMBL:A1K444,NCBI_GP:CAL93599.1;Name=CAL93599.1;Note=Protein methyltransferase hemK (EC 2.1.1.-) (Protein-glutamine N- methyltransferase hemK) (Protein-(glutamine-N5) MTase hemK) (M.StyLTHemKP). Methylates the translation termination release factor RF1 on Gln-235 and RF2 on Gln-252.%3B~Family membership;gbkey=CDS;gene=hemK;product=HemK protein;protein_id=CAL93599.1;transl_table=11
AM406670.1	EMBL	gene	1056474	1056797	.	+	.	ID=gene998;Name=azo0983;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0983
AM406670.1	EMBL	CDS	1056474	1056797	.	+	0	ID=cds981;Parent=gene998;Dbxref=EnsemblGenomes-Gn:azo0983,EnsemblGenomes-Tr:CAL93600,GOA:A1K445,InterPro:IPR002109,InterPro:IPR004480,InterPro:IPR012336,InterPro:IPR014434,UniProtKB/TrEMBL:A1K445,NCBI_GP:CAL93600.1;Name=CAL93600.1;Note=Conserved hypothetical protein. Homology to ne1911 of N. europaea of 67%25. InterPro: Glutaredoxin-related protein (IPR004480) TIGR00365: glutaredoxin-related protein no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93600.1;transl_table=11
AM406670.1	EMBL	gene	1056828	1057925	.	-	.	ID=gene999;Name=azo0984;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0984
AM406670.1	EMBL	CDS	1056828	1057925	.	-	0	ID=cds982;Parent=gene999;Dbxref=EnsemblGenomes-Gn:azo0984,EnsemblGenomes-Tr:CAL93601,UniProtKB/TrEMBL:A1K446,NCBI_GP:CAL93601.1;Name=CAL93601.1;Note=Conserved hypothetical secreted protein. Homology to NE1634 of Nitrosomonas europaea of 34%25 (trembl|Q82U71(SRS)) No domains predicted. No TMHs Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93601.1;transl_table=11
AM406670.1	EMBL	gene	1057916	1058776	.	-	.	ID=gene1000;Name=azo0985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0985
AM406670.1	EMBL	CDS	1057916	1058776	.	-	0	ID=cds983;Parent=gene1000;Dbxref=EnsemblGenomes-Gn:azo0985,EnsemblGenomes-Tr:CAL93602,InterPro:IPR027417,InterPro:IPR027600,UniProtKB/TrEMBL:A1K447,NCBI_GP:CAL93602.1;Name=CAL93602.1;Note=Conserved hypothetical protein%2C 35%25 identity (56%25 similarity) to TrEMBL%3BQ82U70. Signal peptide Present. No TMH reported Present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93602.1;transl_table=11
AM406670.1	EMBL	gene	1058789	1059091	.	-	.	ID=gene1001;Name=azo0986;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0986
AM406670.1	EMBL	CDS	1058789	1059091	.	-	0	ID=cds984;Parent=gene1001;Dbxref=EnsemblGenomes-Gn:azo0986,EnsemblGenomes-Tr:CAL93603,InterPro:IPR027599,UniProtKB/TrEMBL:A1K448,NCBI_GP:CAL93603.1;Name=CAL93603.1;Note=Hypothetical Protein. No Good functional or similar proteins matching in the database. No domains%2C repeats%2Cmotifs or features present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL93603.1;transl_table=11
AM406670.1	EMBL	gene	1059121	1059837	.	-	.	ID=gene1002;Name=azo0987;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0987
AM406670.1	EMBL	CDS	1059121	1059837	.	-	0	ID=cds985;Parent=gene1002;Dbxref=EnsemblGenomes-Gn:azo0987,EnsemblGenomes-Tr:CAL93604,UniProtKB/TrEMBL:A1K449,NCBI_GP:CAL93604.1;Name=CAL93604.1;Note=Hypothetical protein predicted by Glimmer/Critica. No homology to data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL93604.1;transl_table=11
AM406670.1	EMBL	gene	1060017	1061303	.	-	.	ID=gene1003;Name=azo0988;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0988
AM406670.1	EMBL	CDS	1060017	1061303	.	-	0	ID=cds986;Parent=gene1003;Dbxref=EnsemblGenomes-Gn:azo0988,EnsemblGenomes-Tr:CAL93605,GOA:A1K450,InterPro:IPR000595,InterPro:IPR000719,InterPro:IPR008271,InterPro:IPR011009,InterPro:IPR014710,InterPro:IPR017441,InterPro:IPR018488,InterPro:IPR018490,UniProtKB/TrEMBL:A1K450,NCBI_GP:CAL93605.1;Name=CAL93605.1;Note=Putative serine/threonine protein kinase%2C%3B~Family membership;gbkey=CDS;product=putative serine/threonine protein kinase;protein_id=CAL93605.1;transl_table=11
AM406670.1	EMBL	gene	1061310	1062752	.	-	.	ID=gene1004;Name=argH;gbkey=Gene;gene=argH;gene_biotype=protein_coding;locus_tag=azo0989
AM406670.1	EMBL	CDS	1061310	1062752	.	-	0	ID=cds987;Parent=gene1004;Dbxref=EnsemblGenomes-Gn:azo0989,EnsemblGenomes-Tr:CAL93606,GOA:A1K451,InterPro:IPR000362,InterPro:IPR008948,InterPro:IPR009049,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,InterPro:IPR029419,NCBI_GP:CAL93606.1;Name=CAL93606.1;Note=Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase) (ASAL).%3B~High confidence in function and specificity;gbkey=CDS;gene=argH;product=ArgH protein;protein_id=CAL93606.1;transl_table=11
AM406670.1	EMBL	gene	1062841	1063866	.	+	.	ID=gene1005;Name=algZ;gbkey=Gene;gene=algZ;gene_biotype=protein_coding;locus_tag=azo0990
AM406670.1	EMBL	CDS	1062841	1063866	.	+	0	ID=cds988;Parent=gene1005;Dbxref=EnsemblGenomes-Gn:azo0990,EnsemblGenomes-Tr:CAL93607,GOA:A1K452,InterPro:IPR003594,InterPro:IPR010559,UniProtKB/TrEMBL:A1K452,NCBI_GP:CAL93607.1;Name=CAL93607.1;Note=Putative alginate biosynthesis protein AlgZ/FimS%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=algZ;product=putative alginate biosynthesis protein AlgZ/FimS;protein_id=CAL93607.1;transl_table=11
AM406670.1	EMBL	gene	1063863	1064624	.	+	.	ID=gene1006;Name=algR;gbkey=Gene;gene=algR;gene_biotype=protein_coding;locus_tag=azo0991
AM406670.1	EMBL	CDS	1063863	1064624	.	+	0	ID=cds989;Parent=gene1006;Dbxref=EnsemblGenomes-Gn:azo0991,EnsemblGenomes-Tr:CAL93608,GOA:A1K453,InterPro:IPR001789,InterPro:IPR007492,InterPro:IPR011006,UniProtKB/TrEMBL:A1K453,NCBI_GP:CAL93608.1;Name=CAL93608.1;Note=Probable alginate biosynthesis regulatory protein AlgR%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=algR;product=probable alginate biosynthesis regulatory protein AlgR;protein_id=CAL93608.1;transl_table=11
AM406670.1	EMBL	gene	1064654	1067407	.	-	.	ID=gene1007;Name=ppc;gbkey=Gene;gene=ppc;gene_biotype=protein_coding;locus_tag=azo0992
AM406670.1	EMBL	CDS	1064654	1067407	.	-	0	ID=cds990;Parent=gene1007;Dbxref=EnsemblGenomes-Gn:azo0992,EnsemblGenomes-Tr:CAL93609,GOA:A1K454,InterPro:IPR015813,InterPro:IPR018129,InterPro:IPR021135,InterPro:IPR022805,NCBI_GP:CAL93609.1;Name=CAL93609.1;Note=Probable phosphoenolpyruvate carboxylase. Homology to ppc of R. palustris of 61%25 (sprot|CAPP_RHOPA). Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. Pfam: Phosphonenolpyruvate carboxylase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ppc;product=probable phosphoenolpyruvate carboxylase;protein_id=CAL93609.1;transl_table=11
AM406670.1	EMBL	gene	1067713	1068663	.	+	.	ID=gene1008;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=azo0993
AM406670.1	EMBL	CDS	1067713	1068663	.	+	0	ID=cds991;Parent=gene1008;Dbxref=EnsemblGenomes-Gn:azo0993,EnsemblGenomes-Tr:CAL93610,GOA:A1K455,InterPro:IPR000860,InterPro:IPR022417,InterPro:IPR022418,InterPro:IPR022419,UniProtKB/TrEMBL:A1K455,NCBI_GP:CAL93610.1;Name=CAL93610.1;Note=Porphobilinogen deaminase (HMBS). Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane preuroporphyrinogen in several discrete steps. InterPro: Porphobilinogen deaminase hemC: porphobilinogen deaminase%3B~High confidence in function and specificity;gbkey=CDS;gene=hemC;product=hydroxymethylbilane synthase;protein_id=CAL93610.1;transl_table=11
AM406670.1	EMBL	gene	1068679	1069476	.	+	.	ID=gene1009;Name=hemD;gbkey=Gene;gene=hemD;gene_biotype=protein_coding;locus_tag=azo0994
AM406670.1	EMBL	CDS	1068679	1069476	.	+	0	ID=cds992;Parent=gene1009;Dbxref=EnsemblGenomes-Gn:azo0994,EnsemblGenomes-Tr:CAL93611,GOA:A1K456,InterPro:IPR003754,UniProtKB/TrEMBL:A1K456,NCBI_GP:CAL93611.1;Name=CAL93611.1;Note=Uroporphyrinogen-III synthase (Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane hydrolyase [cyclizing]). catalytic activity: hydroxymethylbilane %3D uroporphyrinogen-iii + h(2)o. pathway:porphyrin biosynthesis%3B fourth step. ribH: riboflavin synthase beta subunit%3B~Specificity unclear;gbkey=CDS;gene=hemD;product=HemD protein;protein_id=CAL93611.1;transl_table=11
AM406670.1	EMBL	gene	1069486	1070682	.	+	.	ID=gene1010;Name=hemX;gbkey=Gene;gene=hemX;gene_biotype=protein_coding;locus_tag=azo0995
AM406670.1	EMBL	CDS	1069486	1070682	.	+	0	ID=cds993;Parent=gene1010;Dbxref=EnsemblGenomes-Gn:azo0995,EnsemblGenomes-Tr:CAL93612,GOA:A1K457,InterPro:IPR007470,UniProtKB/TrEMBL:A1K457,NCBI_GP:CAL93612.1;Name=CAL93612.1;Note=Putative uroporphyrin-III C-methyltransferase. catalytic activity: 2 s-adenosyl-l-methionine + uroporphyrin iii %3D 2 s-adenosyl-l-homocysteine + sirohydrochlorin. pathway: siroheme and cobalamin biosynthesis.%3B~Specificity unclear;gbkey=CDS;gene=hemX;product=Uroporphyrin-III C-methyltransferase;protein_id=CAL93612.1;transl_table=11
AM406670.1	EMBL	gene	1070695	1071894	.	+	.	ID=gene1011;Name=hemY;gbkey=Gene;gene=hemY;gene_biotype=protein_coding;locus_tag=azo0996
AM406670.1	EMBL	CDS	1070695	1071894	.	+	0	ID=cds994;Parent=gene1011;Dbxref=EnsemblGenomes-Gn:azo0996,EnsemblGenomes-Tr:CAL93613,GOA:A1K458,InterPro:IPR000048,InterPro:IPR005254,InterPro:IPR010817,InterPro:IPR011990,UniProtKB/TrEMBL:A1K458,NCBI_GP:CAL93613.1;Name=CAL93613.1;Note=HemY protein. involved in a late step of protoheme ix synthesis.%3B~High confidence in function and specificity;gbkey=CDS;gene=hemY;product=HemY protein;protein_id=CAL93613.1;transl_table=11
AM406670.1	EMBL	gene	1072050	1072769	.	+	.	ID=gene1012;Name=glcC;gbkey=Gene;gene=glcC;gene_biotype=protein_coding;locus_tag=azo0997
AM406670.1	EMBL	CDS	1072050	1072769	.	+	0	ID=cds995;Parent=gene1012;Dbxref=EnsemblGenomes-Gn:azo0997,EnsemblGenomes-Tr:CAL93614,GOA:A1K459,InterPro:IPR000524,InterPro:IPR008920,InterPro:IPR011711,InterPro:IPR011991,UniProtKB/TrEMBL:A1K459,NCBI_GP:CAL93614.1;Name=CAL93614.1;Note=Glc operon transcriptional activator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=glcC;product=glc operon transcriptional activator;protein_id=CAL93614.1;transl_table=11
AM406670.1	EMBL	gene	1072863	1074362	.	+	.	ID=gene1013;Name=glcD1;gbkey=Gene;gene=glcD1;gene_biotype=protein_coding;locus_tag=azo0998
AM406670.1	EMBL	CDS	1072863	1074362	.	+	0	ID=cds996;Parent=gene1013;Dbxref=EnsemblGenomes-Gn:azo0998,EnsemblGenomes-Tr:CAL93615,GOA:A1K460,InterPro:IPR004113,InterPro:IPR006094,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,InterPro:IPR016171,UniProtKB/TrEMBL:A1K460,NCBI_GP:CAL93615.1;Name=CAL93615.1;Note=Probable glycolate oxidase subunit glcD. Homology to glcD of E. coli of 64%25 (sprot|GLCD_ECOLI) InterPro: FAD linked oxidase C-terminal (IPR004113)%3B FAD linked oxidase N-terminal (IPR006093) Pfam: FAD binding domain%3B FAD linked oxidase%2C C-terminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=glcD1;product=probable glycolate oxidase subunit GlcD;protein_id=CAL93615.1;transl_table=11
AM406670.1	EMBL	gene	1074367	1074513	.	+	.	ID=gene1014;Name=azo0999;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo0999
AM406670.1	EMBL	CDS	1074367	1074513	.	+	0	ID=cds997;Parent=gene1014;Dbxref=EnsemblGenomes-Gn:azo0999,EnsemblGenomes-Tr:CAL93616,UniProtKB/TrEMBL:A1K461,NCBI_GP:CAL93616.1;Name=CAL93616.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal pepitde. 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93616.1;transl_table=11
AM406670.1	EMBL	gene	1074510	1075571	.	+	.	ID=gene1015;Name=glcE;gbkey=Gene;gene=glcE;gene_biotype=protein_coding;locus_tag=azo1000
AM406670.1	EMBL	CDS	1074510	1075571	.	+	0	ID=cds998;Parent=gene1015;Dbxref=EnsemblGenomes-Gn:azo1000,EnsemblGenomes-Tr:CAL93617,GOA:A1K462,InterPro:IPR004113,InterPro:IPR006094,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016169,InterPro:IPR016171,UniProtKB/TrEMBL:A1K462,NCBI_GP:CAL93617.1;Name=CAL93617.1;Note=Probable glycolate oxidase subunit GlcE. Homology to glcE of E. coli of 47%25 (sprot|GLCE_ECOLI) InterPro: FAD linked oxidase N-terminal (IPR006093) Pfam: FAD binding domain Tigrfam: glcD: glycolate oxidase subunit GlcD no singla peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=glcE;product=probable glycolate oxidase subunit GlcE;protein_id=CAL93617.1;transl_table=11
AM406670.1	EMBL	gene	1075575	1076819	.	+	.	ID=gene1016;Name=glcF;gbkey=Gene;gene=glcF;gene_biotype=protein_coding;locus_tag=azo1001
AM406670.1	EMBL	CDS	1075575	1076819	.	+	0	ID=cds999;Parent=gene1016;Dbxref=EnsemblGenomes-Gn:azo1001,EnsemblGenomes-Tr:CAL93618,GOA:A1K463,InterPro:IPR004017,InterPro:IPR012257,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K463,NCBI_GP:CAL93618.1;Name=CAL93618.1;Note=Probable glycolate oxidase iron-sulfur subunit. Homology to glcF of E. coli of 56%25 (sprot|GLCF_ECOLI) Pfam: Domain of unknown function (DUF224) (192-256 aa%3B 329-391 aa) no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=glcF;product=probable glycolate oxidase iron-sulfur subunit;protein_id=CAL93618.1;transl_table=11
AM406670.1	EMBL	gene	1076945	1077721	.	+	.	ID=gene1017;Name=azo1002;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1002
AM406670.1	EMBL	CDS	1076945	1077721	.	+	0	ID=cds1000;Parent=gene1017;Dbxref=EnsemblGenomes-Gn:azo1002,EnsemblGenomes-Tr:CAL93619,GOA:A1K464,InterPro:IPR001932,InterPro:IPR015655,UniProtKB/TrEMBL:A1K464,NCBI_GP:CAL93619.1;Name=CAL93619.1;Note=Putative phosphoprotein phosphatase%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative phosphoprotein phosphatase;protein_id=CAL93619.1;transl_table=11
AM406670.1	EMBL	gene	1077900	1079021	.	+	.	ID=gene1018;Name=pntAA;gbkey=Gene;gene=pntAA;gene_biotype=protein_coding;locus_tag=azo1003
AM406670.1	EMBL	CDS	1077900	1079021	.	+	0	ID=cds1001;Parent=gene1018;Dbxref=EnsemblGenomes-Gn:azo1003,EnsemblGenomes-Tr:CAL93620,GOA:A1K465,InterPro:IPR007698,InterPro:IPR007886,InterPro:IPR008143,InterPro:IPR016040,InterPro:IPR026255,UniProtKB/TrEMBL:A1K465,NCBI_GP:CAL93620.1;Name=CAL93620.1;Note=Probable NAD(P) transhydrogenase%2C subunit alpha part 1. Homology to pntAA of R. rubrum of 44%25 (sprot|PNAA_RHORU). The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane. Tirfam: pntA: NAD(P) transhydrogenase alpha subunit Pfam: Alanine dehydrogenase/pyridine nucleotide dehydrogenase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=pntAA;product=probable NAD(P) transhydrogenase%2C subunit alpha part 1;protein_id=CAL93620.1;transl_table=11
AM406670.1	EMBL	gene	1079035	1079343	.	+	.	ID=gene1019;Name=pntAB;gbkey=Gene;gene=pntAB;gene_biotype=protein_coding;locus_tag=azo1004
AM406670.1	EMBL	CDS	1079035	1079343	.	+	0	ID=cds1002;Parent=gene1019;Dbxref=EnsemblGenomes-Gn:azo1004,EnsemblGenomes-Tr:CAL93621,InterPro:IPR024605,UniProtKB/TrEMBL:A1K466,NCBI_GP:CAL93621.1;Name=CAL93621.1;Note=Conserved hypothetical NAD(P) transhydrogenase%2Csubunit alpha part 2. Homology to pntA of X. axonopodis of 74%25 (trembl|Q8PNW6). The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane. 3 TMHs no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=pntAB;product=conserved hypothetical NAD(P) transhydrogenase%2Csubunit alpha part 2;protein_id=CAL93621.1;transl_table=11
AM406670.1	EMBL	gene	1079340	1080719	.	+	.	ID=gene1020;Name=pntB;gbkey=Gene;gene=pntB;gene_biotype=protein_coding;locus_tag=azo1005
AM406670.1	EMBL	CDS	1079340	1080719	.	+	0	ID=cds1003;Parent=gene1020;Dbxref=EnsemblGenomes-Gn:azo1005,EnsemblGenomes-Tr:CAL93622,GOA:A1K467,InterPro:IPR012136,InterPro:IPR029035,UniProtKB/TrEMBL:A1K467,NCBI_GP:CAL93622.1;Name=CAL93622.1;Note=Probable NAD(P) transhydrogenase%2C subunit beta. Homology to pntB of R. rubrum of 46%25 (sprot|PNTB_RHORU) The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane. Pfam: NAD(P) transhydrogenase beta subunit signal peptide 7 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=pntB;product=probable NAD(P) transhydrogenase%2C subunit beta;protein_id=CAL93622.1;transl_table=11
AM406670.1	EMBL	gene	1080834	1081184	.	+	.	ID=gene1021;Name=azo1006;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1006
AM406670.1	EMBL	CDS	1080834	1081184	.	+	0	ID=cds1004;Parent=gene1021;Dbxref=EnsemblGenomes-Gn:azo1006,EnsemblGenomes-Tr:CAL93623,UniProtKB/TrEMBL:A1K468,NCBI_GP:CAL93623.1;Name=CAL93623.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93623.1;transl_table=11
AM406670.1	EMBL	gene	1081178	1083613	.	-	.	ID=gene1022;Name=azo1007;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1007
AM406670.1	EMBL	CDS	1081178	1083613	.	-	0	ID=cds1005;Parent=gene1022;Dbxref=EnsemblGenomes-Gn:azo1007,EnsemblGenomes-Tr:CAL93624,GOA:A1K469,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR029787,UniProtKB/TrEMBL:A1K469,NCBI_GP:CAL93624.1;Name=CAL93624.1;Note=Hypothetical signaling protein;gbkey=CDS;product=hypothetical signaling protein;protein_id=CAL93624.1;transl_table=11
AM406670.1	EMBL	gene	1083711	1085195	.	-	.	ID=gene1023;Name=rhlE2;gbkey=Gene;gene=rhlE2;gene_biotype=protein_coding;locus_tag=azo1008
AM406670.1	EMBL	CDS	1083711	1085195	.	-	0	ID=cds1006;Parent=gene1023;Dbxref=EnsemblGenomes-Gn:azo1008,EnsemblGenomes-Tr:CAL93625,GOA:A1K470,InterPro:IPR000629,InterPro:IPR001650,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR014014,InterPro:IPR027417,UniProtKB/TrEMBL:A1K470,NCBI_GP:CAL93625.1;Name=CAL93625.1;Note=Putative ATP-dependent RNA helicase rhlE.%3B~Family membership;gbkey=CDS;gene=rhlE2;product=putative ATP-dependent RNA helicase;protein_id=CAL93625.1;transl_table=11
AM406670.1	EMBL	gene	1085393	1086487	.	-	.	ID=gene1024;Name=azo1009;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1009
AM406670.1	EMBL	CDS	1085393	1086487	.	-	0	ID=cds1007;Parent=gene1024;Dbxref=EnsemblGenomes-Gn:azo1009,EnsemblGenomes-Tr:CAL93626,GOA:A1K471,InterPro:IPR002877,InterPro:IPR011224,InterPro:IPR029063,NCBI_GP:CAL93626.1;Name=CAL93626.1;Note=Conserved hypothetical protein. Homology to xcc0816 of X. campestris of 49%25 (trembl|Q8PCB8) Pfam: FtsJ-like methyltransferase no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93626.1;transl_table=11
AM406670.1	EMBL	gene	1086606	1087658	.	+	.	ID=gene1025;Name=tas;gbkey=Gene;gene=tas;gene_biotype=protein_coding;locus_tag=azo1010
AM406670.1	EMBL	CDS	1086606	1087658	.	+	0	ID=cds1008;Parent=gene1025;Dbxref=EnsemblGenomes-Gn:azo1010,EnsemblGenomes-Tr:CAL93627,InterPro:IPR001395,InterPro:IPR023210,UniProtKB/TrEMBL:A1K472,NCBI_GP:CAL93627.1;Name=CAL93627.1;Note=Probable oxidoreductase Tas. Homology to tas of E. coli of 51%25 (sprot|TAS_ECOLI). InterPro: Aldo/keto reductase family (IPR001395) Pfam: Aldo/keto reductase family no signal peptide no TMHs%3B~Function unclear;gbkey=CDS;gene=tas;product=probable oxidoreductase Tas;protein_id=CAL93627.1;transl_table=11
AM406670.1	EMBL	gene	1087666	1088040	.	-	.	ID=gene1026;Name=azo1011;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1011
AM406670.1	EMBL	CDS	1087666	1088040	.	-	0	ID=cds1009;Parent=gene1026;Dbxref=EnsemblGenomes-Gn:azo1011,EnsemblGenomes-Tr:CAL93628,UniProtKB/TrEMBL:A1K473,NCBI_GP:CAL93628.1;Name=CAL93628.1;Note=Conserved hypothetical secreted protein. Homology to Rgel02001790 of Rubrivivax gelatinosus of 45%25 (gi|47573892|ref|ZP_00243929.1|(NBCI ENTREZ)) . No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93628.1;transl_table=11
AM406670.1	EMBL	gene	1088233	1089531	.	+	.	ID=gene1027;Name=ugpB;gbkey=Gene;gene=ugpB;gene_biotype=protein_coding;locus_tag=azo1012
AM406670.1	EMBL	CDS	1088233	1089531	.	+	0	ID=cds1010;Parent=gene1027;Dbxref=EnsemblGenomes-Gn:azo1012,EnsemblGenomes-Tr:CAL93629,UniProtKB/TrEMBL:A1K474,NCBI_GP:CAL93629.1;Name=CAL93629.1;Note=Glycerol-3-phosphate-binding periplasmic protein precursor. SN-glycerol-3-phosphate and glycerophosphoryl diester-binding protein interacts with the binding protein-dependent transport system ugpACE. 30%25 SBP_bac_1.IPR006061%3B SBP_dom1. Pfam:PF01547%3B SBP_bac_1%3B 1. Signal peptide:present.%3B~High confidence in function and specificity;gbkey=CDS;gene=ugpB;product=putative glycerol-3-phosphate-binding periplasmic protein;protein_id=CAL93629.1;transl_table=11
AM406670.1	EMBL	gene	1089536	1090285	.	+	.	ID=gene1028;Name=ugpQ;gbkey=Gene;gene=ugpQ;gene_biotype=protein_coding;locus_tag=azo1013
AM406670.1	EMBL	CDS	1089536	1090285	.	+	0	ID=cds1011;Parent=gene1028;Dbxref=EnsemblGenomes-Gn:azo1013,EnsemblGenomes-Tr:CAL93630,GOA:A1K475,InterPro:IPR000909,InterPro:IPR004129,InterPro:IPR017946,UniProtKB/TrEMBL:A1K475,NCBI_GP:CAL93630.1;Name=CAL93630.1;Note=Probable glycerophosphodiester phosphodiesterase. Homology to ugpQ of E. coli of 45%25 (sprot|UGPQ_ECOLI). GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE HYDROLYZES DEACYLATED PHOSPHOLIPIDS TO G3P AND THE CORRESPONDING ALCOHOLS. Pfam: Glycerophosporyl diester phosphodiesterase no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=ugpQ;product=probable glycerophosphodiester phosphodiesterase;protein_id=CAL93630.1;transl_table=11
AM406670.1	EMBL	gene	1090402	1091427	.	+	.	ID=gene1029;Name=ispB;gbkey=Gene;gene=ispB;gene_biotype=protein_coding;locus_tag=azo1014
AM406670.1	EMBL	CDS	1090402	1091427	.	+	0	ID=cds1012;Parent=gene1029;Dbxref=EnsemblGenomes-Gn:azo1014,EnsemblGenomes-Tr:CAL93631,GOA:A1K476,InterPro:IPR000092,InterPro:IPR008949,InterPro:IPR017446,UniProtKB/TrEMBL:A1K476,NCBI_GP:CAL93631.1;Name=CAL93631.1;Note=Polyprenyl synthetase%2C82%25 identity to TrEMBL%3BQ5P1Y1. Has Pfam%3BPF00348%2C Polyprenyl synthetase.(IPR000092%2CPolyprenyl_synt)A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol%2C dolichol%2C ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA%2C isoprenoid quinones%2C and sugar carrier lipids. Among the enzymes that participate in that pathway%2C are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.%3B~High confidence in function and specificity;gbkey=CDS;gene=ispB;product=octaprenyl-diphosphate synthase;protein_id=CAL93631.1;transl_table=11
AM406670.1	EMBL	gene	1091451	1091527	.	+	.	ID=gene1030;Name=tRNA-Pro;gbkey=Gene;gene=tRNA-Pro;gene_biotype=tRNA;locus_tag=azo_tRNA_0014
AM406670.1	EMBL	tRNA	1091451	1091527	.	+	.	ID=rna17;Parent=gene1030;anticodon=(pos:1091485..1091487);gbkey=tRNA;gene=tRNA-Pro;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Pro
AM406670.1	EMBL	exon	1091451	1091527	.	+	.	ID=id18;Parent=rna17;anticodon=(pos:1091485..1091487);gbkey=tRNA;gene=tRNA-Pro;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Pro
AM406670.1	EMBL	gene	1091631	1092566	.	+	.	ID=gene1031;Name=azo1015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1015
AM406670.1	EMBL	CDS	1091631	1092566	.	+	0	ID=cds1013;Parent=gene1031;Dbxref=EnsemblGenomes-Gn:azo1015,EnsemblGenomes-Tr:CAL93632,GOA:A1K477,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K477,NCBI_GP:CAL93632.1;Name=CAL93632.1;Note=Probable transcriptional regulator%2C LysR family%2C%3B~Family membership;gbkey=CDS;product=probable transcriptional regulator%2C LysR family;protein_id=CAL93632.1;transl_table=11
AM406670.1	EMBL	gene	1092645	1093793	.	+	.	ID=gene1032;Name=lldA;gbkey=Gene;gene=lldA;gene_biotype=protein_coding;locus_tag=azo1016
AM406670.1	EMBL	CDS	1092645	1093793	.	+	0	ID=cds1014;Parent=gene1032;Dbxref=EnsemblGenomes-Gn:azo1016,EnsemblGenomes-Tr:CAL93633,GOA:A1K478,InterPro:IPR000262,InterPro:IPR008259,InterPro:IPR012133,InterPro:IPR013785,UniProtKB/TrEMBL:A1K478,NCBI_GP:CAL93633.1;Name=CAL93633.1;Note=L-lactate dehydrogenase. Homology to lldA of N. meningitidis of 72%25 (trembl|Q51135). InterPro: FMN-dependent alpha-hydroxy acid dehydrogenases (IPR000262)%3B Proteins binding FMN and related compounds core region (IPR003009 Pfam: FMN-dependent dehydrogenase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=lldA;product=L-lactate dehydrogenase;protein_id=CAL93633.1;transl_table=11
AM406670.1	EMBL	gene	1093840	1094649	.	-	.	ID=gene1033;Name=comL;gbkey=Gene;gene=comL;gene_biotype=protein_coding;locus_tag=azo1017
AM406670.1	EMBL	CDS	1093840	1094649	.	-	0	ID=cds1015;Parent=gene1033;Dbxref=EnsemblGenomes-Gn:azo1017,EnsemblGenomes-Tr:CAL93634,GOA:A1K479,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR017689,UniProtKB/TrEMBL:A1K479,NCBI_GP:CAL93634.1;Name=CAL93634.1;Note=probable competence lipoprotein comL precursor. Homology to comL of N. gonorrhoeae of 47%25 (sprot|COML_NEIGO(SRS)) REQUIRED FOR EFFICIENT TRANSFORMATION OF NEISSERIA MENINGITIDIS BY SPECIES-RELATED DNA (By similarity). InterPro: TPR repeat (IPR001440) no signal peptide no TMH ccoS: cytochrome oxidase maturation pro%3B~High confidence in function and specificity;gbkey=CDS;gene=comL;product=probable competence lipoprotein precursor;protein_id=CAL93634.1;transl_table=11
AM406670.1	EMBL	gene	1094663	1095637	.	+	.	ID=gene1034;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;locus_tag=azo1018
AM406670.1	EMBL	CDS	1094663	1095637	.	+	0	ID=cds1016;Parent=gene1034;Dbxref=EnsemblGenomes-Gn:azo1018,EnsemblGenomes-Tr:CAL93635,GOA:A1K480,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR006225,InterPro:IPR020103,UniProtKB/TrEMBL:A1K480,NCBI_GP:CAL93635.1;Name=CAL93635.1;Note=Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil at positions 1911 1915 and 1917 in 23S ribosomal RNA.%3B~Family membership;gbkey=CDS;gene=rluD;product=pseudouridylate synthase;protein_id=CAL93635.1;transl_table=11
AM406670.1	EMBL	gene	1095700	1096395	.	+	.	ID=gene1035;Name=azo1019;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1019
AM406670.1	EMBL	CDS	1095700	1096395	.	+	0	ID=cds1017;Parent=gene1035;Dbxref=EnsemblGenomes-Gn:azo1019,EnsemblGenomes-Tr:CAL93636,InterPro:IPR003730,InterPro:IPR011324,UniProtKB/TrEMBL:A1K481,NCBI_GP:CAL93636.1;Name=CAL93636.1;Note=Conserved hypothetical protein. Homology to CV2191 of C.violaceum of 64%25 (tremble:Q7NVZ9). Has PF02578%2CUncharacterised ACR%2C YfiH family COG1496. InterPro%3BIPR003730. No signal peptide. No TMHs. TIGR00726: conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93636.1;transl_table=11
AM406670.1	EMBL	gene	1096434	1096655	.	-	.	ID=gene1036;Name=azo1020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1020
AM406670.1	EMBL	CDS	1096434	1096655	.	-	0	ID=cds1018;Parent=gene1036;Dbxref=EnsemblGenomes-Gn:azo1020,EnsemblGenomes-Tr:CAL93637,UniProtKB/TrEMBL:A1K482,NCBI_GP:CAL93637.1;Name=CAL93637.1;Note=Conserved hypothetical membrane protein. Homology to RS03993 of R.solanacearum of 48%25 (trembl|Q8XYX6(SRS)). No domains. No signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93637.1;transl_table=11
AM406670.1	EMBL	gene	1096743	1098485	.	+	.	ID=gene1037;Name=phaC;gbkey=Gene;gene=phaC;gene_biotype=protein_coding;locus_tag=azo1021
AM406670.1	EMBL	CDS	1096743	1098485	.	+	0	ID=cds1019;Parent=gene1037;Dbxref=EnsemblGenomes-Gn:azo1021,EnsemblGenomes-Tr:CAL93638,GOA:A1K483,InterPro:IPR000073,InterPro:IPR010941,InterPro:IPR010963,InterPro:IPR029058,UniProtKB/TrEMBL:A1K483,NCBI_GP:CAL93638.1;Name=CAL93638.1;Note=Entry name :- TREMBL:Q9ZB54 Prim. accession # Q9ZB54 Identities %3D 290/560 (51%25) InterPro:- IPR000073%3B A/b_hydrolase. IPR010941%3B PhaC_N. Pfam:- PF00561%3B Abhydrolase_1%3B 1. PF07167%3B PhaC_N%3B 1. Prediction: Signal peptide Signal peptide probability: 0.999 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=phaC;product=probable polyhydroxyalkanoate synthase;protein_id=CAL93638.1;transl_table=11
AM406670.1	EMBL	gene	1098596	1099336	.	+	.	ID=gene1038;Name=phbB1;gbkey=Gene;gene=phbB1;gene_biotype=protein_coding;locus_tag=azo1022
AM406670.1	EMBL	CDS	1098596	1099336	.	+	0	ID=cds1020;Parent=gene1038;Dbxref=EnsemblGenomes-Gn:azo1022,EnsemblGenomes-Tr:CAL93639,GOA:A1K484,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR011283,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K484,NCBI_GP:CAL93639.1;Name=CAL93639.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CSWISSPROT:P14697 (60%25 identity)%3B TREMBL:Q8XYX3 (59%25 identity). Pfam (PF00106): Short chain dehydrogenase.%3B~High confidence in function and specificity;gbkey=CDS;gene=phbB1;product=Acetoacetyl-CoA reductase;protein_id=CAL93639.1;transl_table=11
AM406670.1	EMBL	gene	1099528	1100268	.	+	.	ID=gene1039;Name=phbB2;gbkey=Gene;gene=phbB2;gene_biotype=protein_coding;locus_tag=azo1023
AM406670.1	EMBL	CDS	1099528	1100268	.	+	0	ID=cds1021;Parent=gene1039;Dbxref=EnsemblGenomes-Gn:azo1023,EnsemblGenomes-Tr:CAL93640,GOA:A1K485,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR011283,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K485,NCBI_GP:CAL93640.1;Name=CAL93640.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CSWISSPROT:P14697 (62%25 identity)%3B TREMBL:Q8XYX3 (62%25 identiy). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase. SignalP reporting signal peptide.%3B~High confidence in function and specificity;gbkey=CDS;gene=phbB2;product=Acetoacetyl-CoA reductase;protein_id=CAL93640.1;transl_table=11
AM406670.1	EMBL	gene	1100389	1101018	.	+	.	ID=gene1040;Name=phbF;gbkey=Gene;gene=phbF;gene_biotype=protein_coding;locus_tag=azo1024
AM406670.1	EMBL	CDS	1100389	1101018	.	+	0	ID=cds1022;Parent=gene1040;Dbxref=EnsemblGenomes-Gn:azo1024,EnsemblGenomes-Tr:CAL93641,InterPro:IPR007897,InterPro:IPR010134,InterPro:IPR012909,UniProtKB/TrEMBL:A1K486,NCBI_GP:CAL93641.1;Name=CAL93641.1;Note=phbF protein%2C 57%25 identity to TrEMBL%3BQ7NYA7. Has 2 copies of PF05233%2C PHB accumulation regulatory domain%3BIPR007897%2C PHB_accumulat: The proteins this domain is found in are typically involved in regulating polymer accumulation in bacteria%2C particularly poly-beta-hydroxybutyrate (PHB)%3B~High confidence in function and specificity;gbkey=CDS;gene=phbF;product=conserved hypothetical protein;protein_id=CAL93641.1;transl_table=11
AM406670.1	EMBL	gene	1101080	1102411	.	+	.	ID=gene1041;Name=azo1025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1025
AM406670.1	EMBL	CDS	1101080	1102411	.	+	0	ID=cds1023;Parent=gene1041;Dbxref=EnsemblGenomes-Gn:azo1025,EnsemblGenomes-Tr:CAL93642,GOA:A1K487,InterPro:IPR002792,InterPro:IPR005839,InterPro:IPR005840,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR012340,InterPro:IPR013848,InterPro:IPR020612,InterPro:IPR023404,InterPro:IPR023970,NCBI_GP:CAL93642.1;Name=CAL93642.1;Note=conserved hypothetical protein%3B~Family membership%3B~ORF2;gbkey=CDS;product=hypothetical protein;protein_id=CAL93642.1;transl_table=11
AM406670.1	EMBL	gene	1102525	1103373	.	+	.	ID=gene1042;Name=ychK;gbkey=Gene;gene=ychK;gene_biotype=protein_coding;locus_tag=azo1026
AM406670.1	EMBL	CDS	1102525	1103373	.	+	0	ID=cds1024;Parent=gene1042;Dbxref=EnsemblGenomes-Gn:azo1026,EnsemblGenomes-Tr:CAL93643,GOA:A1K488,InterPro:IPR002641,InterPro:IPR016035,UniProtKB/TrEMBL:A1K488,NCBI_GP:CAL93643.1;Name=CAL93643.1;Note=Hypothetical protein ychK. TREMBL:Q89IT4: 42%25 identity%2C 58%25 similarity InterPro: Uncharacterized protein family UPF0028 InterPro:IPR002641%3B Patatin. Pfam:PF01734%3B Patatin hypA: hydrogenase expression/formation Non-secretory protein with signalpeptide probability:0.141 (SignalP predicted) Absence of TMH's%3B~Family membership;gbkey=CDS;gene=ychK;product=probable esterase;protein_id=CAL93643.1;transl_table=11
AM406670.1	EMBL	gene	1103397	1104803	.	+	.	ID=gene1043;Name=glcD2;gbkey=Gene;gene=glcD2;gene_biotype=protein_coding;locus_tag=azo1027
AM406670.1	EMBL	CDS	1103397	1104803	.	+	0	ID=cds1025;Parent=gene1043;Dbxref=EnsemblGenomes-Gn:azo1027,EnsemblGenomes-Tr:CAL93644,GOA:A1K489,InterPro:IPR004113,InterPro:IPR006094,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,InterPro:IPR016171,UniProtKB/TrEMBL:A1K489,NCBI_GP:CAL93644.1;Name=CAL93644.1;Note=Putative glycolate oxidase subunit GlcD. Homology to glcD of E. coli of 32%25 (sprot|GLCD_ECOLI). InterPro: FAD linked oxidase C-terminal (IPR004113)%3Bm FAD linked oxidas%2C N-terminal (IPR006093) Pfam: FAD binding domain%3B FAD linked oxidase%2C C-terminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=glcD2;product=putative glycolate oxidase subunit GlcD;protein_id=CAL93644.1;transl_table=11
AM406670.1	EMBL	gene	1104890	1104965	.	+	.	ID=gene1044;Name=tRNA-Ala;gbkey=Gene;gene=tRNA-Ala;gene_biotype=tRNA;locus_tag=azo_tRNA_0015
AM406670.1	EMBL	tRNA	1104890	1104965	.	+	.	ID=rna18;Parent=gene1044;anticodon=(pos:1104923..1104925);gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	exon	1104890	1104965	.	+	.	ID=id19;Parent=rna18;anticodon=(pos:1104923..1104925);gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	gene	1104986	1105061	.	+	.	ID=gene1045;Name=tRNA-Glu;gbkey=Gene;gene=tRNA-Glu;gene_biotype=tRNA;locus_tag=azo_tRNA_0016
AM406670.1	EMBL	tRNA	1104986	1105061	.	+	.	ID=rna19;Parent=gene1045;anticodon=(pos:1105020..1105022);gbkey=tRNA;gene=tRNA-Glu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Glu
AM406670.1	EMBL	exon	1104986	1105061	.	+	.	ID=id20;Parent=rna19;anticodon=(pos:1105020..1105022);gbkey=tRNA;gene=tRNA-Glu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Glu
AM406670.1	EMBL	gene	1105124	1105200	.	+	.	ID=gene1046;Name=tRNA-Asp;gbkey=Gene;gene=tRNA-Asp;gene_biotype=tRNA;locus_tag=azo_tRNA_0017
AM406670.1	EMBL	tRNA	1105124	1105200	.	+	.	ID=rna20;Parent=gene1046;anticodon=(pos:1105158..1105160);gbkey=tRNA;gene=tRNA-Asp;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Asp
AM406670.1	EMBL	exon	1105124	1105200	.	+	.	ID=id21;Parent=rna20;anticodon=(pos:1105158..1105160);gbkey=tRNA;gene=tRNA-Asp;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Asp
AM406670.1	EMBL	gene	1105287	1105362	.	+	.	ID=gene1047;Name=tRNA-Ala;gbkey=Gene;gene=tRNA-Ala;gene_biotype=tRNA;locus_tag=azo_tRNA_0018
AM406670.1	EMBL	tRNA	1105287	1105362	.	+	.	ID=rna21;Parent=gene1047;anticodon=(pos:1105320..1105322);gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	exon	1105287	1105362	.	+	.	ID=id22;Parent=rna21;anticodon=(pos:1105320..1105322);gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	gene	1105372	1105447	.	+	.	ID=gene1048;Name=tRNA-Glu;gbkey=Gene;gene=tRNA-Glu;gene_biotype=tRNA;locus_tag=azo_tRNA_0019
AM406670.1	EMBL	tRNA	1105372	1105447	.	+	.	ID=rna22;Parent=gene1048;anticodon=(pos:1105406..1105408);gbkey=tRNA;gene=tRNA-Glu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Glu
AM406670.1	EMBL	exon	1105372	1105447	.	+	.	ID=id23;Parent=rna22;anticodon=(pos:1105406..1105408);gbkey=tRNA;gene=tRNA-Glu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Glu
AM406670.1	EMBL	gene	1105508	1105584	.	+	.	ID=gene1049;Name=tRNA-Asp;gbkey=Gene;gene=tRNA-Asp;gene_biotype=tRNA;locus_tag=azo_tRNA_0020
AM406670.1	EMBL	tRNA	1105508	1105584	.	+	.	ID=rna23;Parent=gene1049;anticodon=(pos:1105542..1105544);gbkey=tRNA;gene=tRNA-Asp;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Asp
AM406670.1	EMBL	exon	1105508	1105584	.	+	.	ID=id24;Parent=rna23;anticodon=(pos:1105542..1105544);gbkey=tRNA;gene=tRNA-Asp;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Asp
AM406670.1	EMBL	gene	1105799	1106650	.	+	.	ID=gene1050;Name=hbdA;gbkey=Gene;gene=hbdA;gene_biotype=protein_coding;locus_tag=azo1028
AM406670.1	EMBL	CDS	1105799	1106650	.	+	0	ID=cds1026;Parent=gene1050;Dbxref=EnsemblGenomes-Gn:azo1028,EnsemblGenomes-Tr:CAL93645,GOA:A1K490,InterPro:IPR006108,InterPro:IPR006176,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR016040,InterPro:IPR022694,UniProtKB/TrEMBL:A1K490,NCBI_GP:CAL93645.1;Name=CAL93645.1;Note=Activity:- (S)-3-hydroxybutanoyl-CoA + NADP+ %3D 3-acetoacetyl-CoA + NADPH + H+ Entry name :- TREMBL:Q89GX2 Prim. accession # Q89GX2 Identities %3D 177/280 (63%25) InterPro:- IPR006108%3B 3HCDH_C. IPR006176%3B 3HCDH_N. IPR008927%3B 6DGDH_C_like. IPR000205%3B NAD_BS. Pfam :-PF00725%3B 3HCDH%3B 1. PF02737%3B 3HCDH_N%3B 1. Prediction: Signal peptide Signal peptide probability: 0.873 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=hbdA;product=probable 3-hydroxybutyryl-CoA dehydrogenase;protein_id=CAL93645.1;transl_table=11
AM406670.1	EMBL	gene	1106727	1108178	.	-	.	ID=gene1051;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=azo1029
AM406670.1	EMBL	CDS	1106727	1108178	.	-	0	ID=cds1027;Parent=gene1051;Dbxref=EnsemblGenomes-Gn:azo1029,EnsemblGenomes-Tr:CAL93646,GOA:A1K491,InterPro:IPR000194,InterPro:IPR003593,InterPro:IPR004665,InterPro:IPR011112,InterPro:IPR011113,InterPro:IPR011129,InterPro:IPR012340,InterPro:IPR027417,UniProtKB/TrEMBL:A1K491,NCBI_GP:CAL93646.1;Name=CAL93646.1;Note=Transcription termination factor rho. Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA activation of Rhos RNA-dependent ATPase activity and release of the mRNA from the DNA template. Similar to SWISSPROT: sprot|RHO_ECOLI (60%25 Escherichia coli%2C transcription termination factor Rho) InterPro: IPR000194 ATPase_a/bcentre. IPR003593 AAA_ATPase. IPR004665 Term_rho. IPR002059 Cold_shock. Pfam: PF00006 ATP-synt_ab. TIGRFAM: TIGR00767 transcription termination factor Rho.%3B~High confidence in function and specificity;gbkey=CDS;gene=rho;product=transcription termination factor Rho;protein_id=CAL93646.1;transl_table=11
AM406670.1	EMBL	gene	1108162	1108488	.	-	.	ID=gene1052;Name=trxA1;gbkey=Gene;gene=trxA1;gene_biotype=protein_coding;locus_tag=azo1030
AM406670.1	EMBL	CDS	1108162	1108488	.	-	0	ID=cds1028;Parent=gene1052;Dbxref=EnsemblGenomes-Gn:azo1030,EnsemblGenomes-Tr:CAL93647,GOA:A1K492,InterPro:IPR005746,InterPro:IPR012336,InterPro:IPR013766,InterPro:IPR017937,UniProtKB/TrEMBL:A1K492,NCBI_GP:CAL93647.1;Name=CAL93647.1;Note=Thioredoxin-disulfide reductase. Homology to trxA of T. ferrooxidans of 69%25 (THIO_THIFE). Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide. InterPro: Thioredoxin (IPR006662) Pfam: Thioredoxin no signal peptide no TMHs%3B~Specificity unclear;gbkey=CDS;gene=trxA1;product=thioredoxin-disulfide reductase;protein_id=CAL93647.1;transl_table=11
AM406670.1	EMBL	gene	1108784	1109107	.	+	.	ID=gene1053;Name=fdxA;gbkey=Gene;gene=fdxA;gene_biotype=protein_coding;locus_tag=azo1031
AM406670.1	EMBL	CDS	1108784	1109107	.	+	0	ID=cds1029;Parent=gene1053;Dbxref=EnsemblGenomes-Gn:azo1031,EnsemblGenomes-Tr:CAL93648,GOA:A1K493,InterPro:IPR000813,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR022569,UniProtKB/TrEMBL:A1K493,NCBI_GP:CAL93648.1;Name=CAL93648.1;Note=Probable ferredoxin. Homology to fdxA of A. vineladii of 66%25 (sprot|FER1_AZOVI(SRS)). FERREDOXINS ARE IRON-SULFUR PROTEINS THAT TRANSFER ELECTRONS IN A WIDE VARIETY OF METABOLIC REACTIONS. THIS FERREDOXIN COULD PLAY A ROLE IN REGULATING GENE EXPRESSION BY INTERACTING DIRECTLY WITH DNA. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain IPR001450)%3B 7Fe ferredoxin (IPR000813) Pfam: 4Fe-4S binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fdxA;product=probable ferredoxin;protein_id=CAL93648.1;transl_table=11
AM406670.1	EMBL	gene	1109179	1109628	.	+	.	ID=gene1054;Name=azo1032;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1032
AM406670.1	EMBL	CDS	1109179	1109628	.	+	0	ID=cds1030;Parent=gene1054;Dbxref=EnsemblGenomes-Gn:azo1032,EnsemblGenomes-Tr:CAL93649,GOA:A1K494,InterPro:IPR000644,UniProtKB/TrEMBL:A1K494,NCBI_GP:CAL93649.1;Name=CAL93649.1;Note=TREMBL:Q8XZ43%3B 52%25 identity%2C 70%25 similarity. TREMBL:Q8F5Y8%3B 30%25 identity%2C 56%25 similarity. Protein At5g10860 mitochondrial precursor. IPR000644: CBS domain Pfam:PF00571 - GARS_N TIGRFAM: rrf2 family%2C KpsF/GutQ family (by similarity) kpsF: KpsF/GutQ family protein%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93649.1;transl_table=11
AM406670.1	EMBL	gene	1109767	1111458	.	+	.	ID=gene1055;Name=fadD1;gbkey=Gene;gene=fadD1;gene_biotype=protein_coding;locus_tag=azo1033
AM406670.1	EMBL	CDS	1109767	1111458	.	+	0	ID=cds1031;Parent=gene1055;Dbxref=EnsemblGenomes-Gn:azo1033,EnsemblGenomes-Tr:CAL93650,GOA:A1K495,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:A1K495,NCBI_GP:CAL93650.1;Name=CAL93650.1;Note=Esterification concomitant with transport of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids%2C TREMBL:Q7NY16 (61%25 identity)%3B TREMBL:Q7WLG0 (63%25 identity). InterPro (IPR000873): AMP-dependent synthetase and ligase Pfam (PF00501): AMP-binding enzyme.%3B~High confidence in function and specificity;gbkey=CDS;gene=fadD1;product=Long-chain-fatty-acid-CoA ligase;protein_id=CAL93650.1;transl_table=11
AM406670.1	EMBL	gene	1111730	1113397	.	+	.	ID=gene1056;Name=ilvB;gbkey=Gene;gene=ilvB;gene_biotype=protein_coding;locus_tag=azo1034
AM406670.1	EMBL	CDS	1111730	1113397	.	+	0	ID=cds1032;Parent=gene1056;Dbxref=EnsemblGenomes-Gn:azo1034,EnsemblGenomes-Tr:CAL93651,GOA:A1K496,InterPro:IPR000399,InterPro:IPR011766,InterPro:IPR012000,InterPro:IPR012001,InterPro:IPR012846,InterPro:IPR029035,InterPro:IPR029061,UniProtKB/TrEMBL:A1K496,NCBI_GP:CAL93651.1;Name=CAL93651.1;Note=Acetolactate synthase isozyme I large subunit (AHAS-I) (Acetohydroxy-acid synthase I large subunit) (ALS-I). InterPro: Acetolactate synthase large subunit biosynthetic type acolac_lg: acetolactate synthase large subunit%2Cbiosynthetic type%3B~High confidence in function and specificity;gbkey=CDS;gene=ilvB;product=acetolactate synthase;protein_id=CAL93651.1;transl_table=11
AM406670.1	EMBL	gene	1113400	1113714	.	+	.	ID=gene1057;Name=ilvN;gbkey=Gene;gene=ilvN;gene_biotype=protein_coding;locus_tag=azo1035
AM406670.1	EMBL	CDS	1113400	1113714	.	+	0	ID=cds1033;Parent=gene1057;Dbxref=EnsemblGenomes-Gn:azo1035,EnsemblGenomes-Tr:CAL93652,GOA:A1K497,InterPro:IPR002912,UniProtKB/TrEMBL:A1K497,NCBI_GP:CAL93652.1;Name=CAL93652.1;Note=Acetolactate synthase isozyme I small subunit (EC 2.2.1.6) (AHAS-I) (Acetohydroxy-acid synthase I small subunit) (ALS-I). InterPro: Acetolactate synthase small subunit acolac_sm: acetolactate synthase small subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=ilvN;product=acetolactate synthase;protein_id=CAL93652.1;transl_table=11
AM406670.1	EMBL	gene	1113825	1114961	.	+	.	ID=gene1058;Name=aroC;gbkey=Gene;gene=aroC;gene_biotype=protein_coding;locus_tag=azo1036
AM406670.1	EMBL	CDS	1113825	1114961	.	+	0	ID=cds1034;Parent=gene1058;Dbxref=EnsemblGenomes-Gn:azo1036,EnsemblGenomes-Tr:CAL93653,GOA:A1K498,InterPro:IPR000453,InterPro:IPR020541,NCBI_GP:CAL93653.1;Name=CAL93653.1;Note=Chorismate synthase%2C AroC. It catalyzes the 1%2C4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine%2C tyrosine or tryptophan biosynthesis. Similar to sprot|AROC_VIBAN (60%25) and to sprot|AROC_ECOLI (61%25). TIGRFAM: chorismate synthase%2C aroC Pfam : Chorismate synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=aroC;product=AroC protein;protein_id=CAL93653.1;transl_table=11
AM406670.1	EMBL	gene	1114958	1116148	.	+	.	ID=gene1059;Name=azo1037;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1037
AM406670.1	EMBL	CDS	1114958	1116148	.	+	0	ID=cds1035;Parent=gene1059;Dbxref=EnsemblGenomes-Gn:azo1037,EnsemblGenomes-Tr:CAL93654,InterPro:IPR016196,InterPro:IPR026032,UniProtKB/TrEMBL:A1K499,NCBI_GP:CAL93654.1;Name=CAL93654.1;Note=Putative transport protein. Similarity to sugar transporters (lacY): lactose permease 2A0105.Similar to POT family of proteins with DUF domains and 12 transmembrane helices. 31%25 identity and 47%25 similarity to putative MFS metabolite transporter from Pseudomonas aeruginosa PA01%3B~Family membership;gbkey=CDS;product=putative MFS metabolite transporter;protein_id=CAL93654.1;transl_table=11
AM406670.1	EMBL	gene	1116163	1116984	.	+	.	ID=gene1060;Name=azo1038;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1038
AM406670.1	EMBL	CDS	1116163	1116984	.	+	0	ID=cds1036;Parent=gene1060;Dbxref=EnsemblGenomes-Gn:azo1038,EnsemblGenomes-Tr:CAL93655,GOA:A1K4A0,InterPro:IPR001915,UniProtKB/TrEMBL:A1K4A0,NCBI_GP:CAL93655.1;Name=CAL93655.1;Note=Conserved hypothetical secreted protein. Homology to bb2112 of B. bronchiseptica of 55%25 (trembl|Q7WKJ4). Pfam: Peptidase family M48 signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93655.1;transl_table=11
AM406670.1	EMBL	gene	1117079	1118488	.	+	.	ID=gene1061;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=azo1039
AM406670.1	EMBL	CDS	1117079	1118488	.	+	0	ID=cds1037;Parent=gene1061;Dbxref=EnsemblGenomes-Gn:azo1039,EnsemblGenomes-Tr:CAL93656,GOA:A1K4A1,InterPro:IPR001030,InterPro:IPR004430,InterPro:IPR015931,InterPro:IPR015932,InterPro:IPR015937,InterPro:IPR018136,NCBI_GP:CAL93656.1;Name=CAL93656.1;Note=3-isopropylmalate dehydratase large subunit%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=leuC;product=LeuC protein;protein_id=CAL93656.1;transl_table=11
AM406670.1	EMBL	gene	1118505	1119143	.	+	.	ID=gene1062;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=azo1040
AM406670.1	EMBL	CDS	1118505	1119143	.	+	0	ID=cds1038;Parent=gene1062;Dbxref=EnsemblGenomes-Gn:azo1040,EnsemblGenomes-Tr:CAL93657,GOA:A1K4A2,InterPro:IPR000573,InterPro:IPR004431,InterPro:IPR015928,InterPro:IPR015937,NCBI_GP:CAL93657.1;Name=CAL93657.1;Note=3-isopropylmalate dehydratase small subunit%2C leuD. Similar to sprot|LEUD_AZOVI (78%25). 3-isopropylmalate dehydratase bind a Fe-4S iron-sulphur cluster and is split into large (leuC) and small chains in eubacteria. TIGRFAM: 3-isopropylmalate dehydratase%2C small%2C leuD Pfam: Aconitase C-terminal domain%3B~High confidence in function and specificity;gbkey=CDS;gene=leuD;product=LeuD protein;protein_id=CAL93657.1;transl_table=11
AM406670.1	EMBL	gene	1119180	1120244	.	+	.	ID=gene1063;Name=leuB;gbkey=Gene;gene=leuB;gene_biotype=protein_coding;locus_tag=azo1041
AM406670.1	EMBL	CDS	1119180	1120244	.	+	0	ID=cds1039;Parent=gene1063;Dbxref=EnsemblGenomes-Gn:azo1041,EnsemblGenomes-Tr:CAL93658,GOA:A1K4A3,InterPro:IPR001804,InterPro:IPR004429,InterPro:IPR019818,InterPro:IPR024084,UniProtKB/TrEMBL:A1K4A3,NCBI_GP:CAL93658.1;Name=CAL93658.1;Note=3-isopropylmalate dehydrogenase%2C leuB. Similar to sprot|LEU3_PSEAE (70%25). 3-isopropylmalate dehydrogenase (IMDH) catalyzes the third step in the biosynthesis of leucine in bacteria and fungi%2C the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. InterPro (PF00180): Isocitrate and isopropylmalate dehydrogenases TIGRFAM : 3-isopropylmalate dehydrogenase%2C leuB%3B~High confidence in function and specificity;gbkey=CDS;gene=leuB;product=3-isopropylmalate dehydrogenase;protein_id=CAL93658.1;transl_table=11
AM406670.1	EMBL	gene	1120327	1121427	.	+	.	ID=gene1064;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=azo1042
AM406670.1	EMBL	CDS	1120327	1121427	.	+	0	ID=cds1040;Parent=gene1064;Dbxref=EnsemblGenomes-Gn:azo1042,EnsemblGenomes-Tr:CAL93659,GOA:A1K4A4,InterPro:IPR000319,InterPro:IPR000534,InterPro:IPR011534,InterPro:IPR012080,InterPro:IPR012280,InterPro:IPR016040,UniProtKB/TrEMBL:A1K4A4,NCBI_GP:CAL93659.1;Name=CAL93659.1;Note=Aspartate-semialdehyde dehydrogenase%2C an enzyme involved in the biosynthesis of various amino acids from aspartate. Similar to sprot|DHAS_ECOLI (67%25) and to trembl|Q845W2 (75%25). Pfam: Semialdehyde dehydrogenase%2Cdimerisation Pfam: Semialdehyde dehydrogenase%2C NAD binding%3B~High confidence in function and specificity;gbkey=CDS;gene=asd;product=Asd protein;protein_id=CAL93659.1;transl_table=11
AM406670.1	EMBL	gene	1121643	1124558	.	+	.	ID=gene1065;Name=fimV1;gbkey=Gene;gene=fimV1;gene_biotype=protein_coding;locus_tag=azo1043
AM406670.1	EMBL	CDS	1121643	1124558	.	+	0	ID=cds1041;Parent=gene1065;Dbxref=EnsemblGenomes-Gn:azo1043,EnsemblGenomes-Tr:CAL93660,InterPro:IPR011990,InterPro:IPR020011,InterPro:IPR020012,UniProtKB/TrEMBL:A1K4A5,NCBI_GP:CAL93660.1;Name=CAL93660.1;Note=In Pseudomonas aeruginosa%2C FimV ist probable involved in remodelling of the peptidoglycan layer to enable assembly of the type IV fimbrial structure and machinery. And it is also required for twitching motility. Similar to trembl|O87015 (28%25). Pfam (PF01476): LysM domain Pfam (PF04102): SlyX%2C may be a coiled-coil structure SignalP reporting Signal peptide%3B~Function unclear;gbkey=CDS;gene=fimV1;product=putative type 4 pilus biogenesis;protein_id=CAL93660.1;transl_table=11
AM406670.1	EMBL	gene	1124621	1125232	.	+	.	ID=gene1066;Name=azo1044;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1044
AM406670.1	EMBL	CDS	1124621	1125232	.	+	0	ID=cds1042;Parent=gene1066;Dbxref=EnsemblGenomes-Gn:azo1044,EnsemblGenomes-Tr:CAL93661,InterPro:IPR003339,UniProtKB/TrEMBL:A1K4A6,NCBI_GP:CAL93661.1;Name=CAL93661.1;Note=Conserved hypothetical membrane protein. Homology to ebA4769 of Azoarcus sp. EbN1 of 53%25 (gnl|keqq|eba:ebA4769(KEGG)). Pfam: Cobalt transport protein. signal peptide. 3 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93661.1;transl_table=11
AM406670.1	EMBL	gene	1125226	1126023	.	+	.	ID=gene1067;Name=azo1045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1045
AM406670.1	EMBL	CDS	1125226	1126023	.	+	0	ID=cds1043;Parent=gene1067;Dbxref=EnsemblGenomes-Gn:azo1045,EnsemblGenomes-Tr:CAL93662,GOA:A1K4A7,InterPro:IPR001406,InterPro:IPR020094,InterPro:IPR020095,InterPro:IPR020097,InterPro:IPR020103,UniProtKB/TrEMBL:A1K4A7,NCBI_GP:CAL93662.1;Name=CAL93662.1;Note=Formation of pseudouridine at positions 38 39 and 40 in the anticodon stem and loop of transfer RNAs. InterPro: tRNA pseudouridine synthase%3B~High confidence in function and specificity;gbkey=CDS;product=pseudouridine synthase A;protein_id=CAL93662.1;transl_table=11
AM406670.1	EMBL	gene	1126024	1126647	.	+	.	ID=gene1068;Name=trpF;gbkey=Gene;gene=trpF;gene_biotype=protein_coding;locus_tag=azo1046
AM406670.1	EMBL	CDS	1126024	1126647	.	+	0	ID=cds1044;Parent=gene1068;Dbxref=EnsemblGenomes-Gn:azo1046,EnsemblGenomes-Tr:CAL93663,GOA:A1K4A8,InterPro:IPR001240,InterPro:IPR011060,InterPro:IPR013785,UniProtKB/TrEMBL:A1K4A8,NCBI_GP:CAL93663.1;Name=CAL93663.1;Note=N-(5-phosphoribosyl)anthranilate isomerase (PRAI) catalyzes the third step of tryptophan biosynthesis. Similar to sprot|TRPF_RALSO (56%25) and to sprot|TRPF_PSEAE (58%25). Pfam (PF00697): N-(5'phosphoribosyl)anthranilate isomerase (PRAI)%3B~High confidence in function and specificity;gbkey=CDS;gene=trpF;product=N-(5'-phosphoribosyl)anthranilate isomerase;protein_id=CAL93663.1;transl_table=11
AM406670.1	EMBL	gene	1126595	1127848	.	+	.	ID=gene1069;Name=trpB;gbkey=Gene;gene=trpB;gene_biotype=protein_coding;locus_tag=azo1047
AM406670.1	EMBL	CDS	1126595	1127848	.	+	0	ID=cds1045;Parent=gene1069;Dbxref=EnsemblGenomes-Gn:azo1047,EnsemblGenomes-Tr:CAL93664,GOA:A1K4A9,InterPro:IPR001926,InterPro:IPR006653,InterPro:IPR006654,InterPro:IPR023026,UniProtKB/TrEMBL:A1K4A9,NCBI_GP:CAL93664.1;Name=CAL93664.1;Note=Tryptophan synthase beta chain is for the synthesis of tryptophan from indole and serine. Similar to sprot|TRPB_RALSO (83%25) and to sprot|TRPB_PSEAE (68%25). TIGRFAM: trpB%2C tryptophan synthase%2C beta subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=trpB;product=TrpB protein;protein_id=CAL93664.1;transl_table=11
AM406670.1	EMBL	gene	1127891	1128706	.	+	.	ID=gene1070;Name=trpA;gbkey=Gene;gene=trpA;gene_biotype=protein_coding;locus_tag=azo1048
AM406670.1	EMBL	CDS	1127891	1128706	.	+	0	ID=cds1046;Parent=gene1070;Dbxref=EnsemblGenomes-Gn:azo1048,EnsemblGenomes-Tr:CAL93665,GOA:A1K4B0,InterPro:IPR002028,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR018204,NCBI_GP:CAL93665.1;Name=CAL93665.1;Note=Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan: L-serine + 1-(indol-3-yl)glycerol 3-phosphate %3D L-tryptophan + glyceraldehyde 3-phosphate + H2O. Alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Similar to trembl|Q8XXY2 (68%25) and to sprot|TRPA_PSEPU (42%25). Pfam (PF00290): Tryptophan synthase alpha chain TIGRfam (TIGR00262): Tryptophan synthase alpha chain InterPro (PS50264): Proteins binding FMN and related compounds core region%3B~High confidence in function and specificity;gbkey=CDS;gene=trpA;product=TrpA protein;protein_id=CAL93665.1;transl_table=11
AM406670.1	EMBL	gene	1128703	1129575	.	+	.	ID=gene1071;Name=accD;gbkey=Gene;gene=accD;gene_biotype=protein_coding;locus_tag=azo1049
AM406670.1	EMBL	CDS	1128703	1129575	.	+	0	ID=cds1047;Parent=gene1071;Dbxref=EnsemblGenomes-Gn:azo1049,EnsemblGenomes-Tr:CAL93666,GOA:A1K4B1,InterPro:IPR000022,InterPro:IPR000438,InterPro:IPR011762,InterPro:IPR029045,UniProtKB/TrEMBL:A1K4B1,NCBI_GP:CAL93666.1;Name=CAL93666.1;Note=Function:-THIS PROTEIN IS A COMPONENT OF THE ACETYL COENZYME A CARBOXYLASE COMPLEX%3B FIRST BIOTIN CARBOXYLASE CATALYZES THE CARBOXYLATION OF THE CARRIER PROTEIN AND THEN THE TRANSCARBOXYLASE TRANSFERS THE CARBOXYL GROUP TO FORM MALONYL-COA (BY SIMILARITY). Entry name :-SWISSPROT:ACCD_ECOLI Prim. accession # P08193 Identities %3D 178/287 (62%25) InterPro:- IPR000438%3B ACoACC_transB. IPR000022%3B Carboxyl_trans. Pfam:- PF01039%3B Carboxyl_trans%3B 1. Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=accD;product=probable acetyl-coenzyme A carboxylase carboxyl transferase subunit b;protein_id=CAL93666.1;transl_table=11
AM406670.1	EMBL	gene	1129592	1130890	.	+	.	ID=gene1072;Name=folC;gbkey=Gene;gene=folC;gene_biotype=protein_coding;locus_tag=azo1050
AM406670.1	EMBL	CDS	1129592	1130890	.	+	0	ID=cds1048;Parent=gene1072;Dbxref=EnsemblGenomes-Gn:azo1050,EnsemblGenomes-Tr:CAL93667,GOA:A1K4B2,InterPro:IPR001645,InterPro:IPR004101,InterPro:IPR013221,UniProtKB/TrEMBL:A1K4B2,NCBI_GP:CAL93667.1;Name=CAL93667.1;Note=FolC bifunctional protein [Includes: Folylpolyglutamate synthase (EC 6.3.2.17) (Folylpoly-gamma-glutamate synthetase) (FPGS)%3B Dihydrofolate synthase (EC 6.3.2.12)]. Conversion of folates to polyglutamate derivatives.%3B~High confidence in function and specificity;gbkey=CDS;gene=folC;product=dihydrofolate synthase / Tetrahydrofolylpolyglutamate synthase;protein_id=CAL93667.1;transl_table=11
AM406670.1	EMBL	gene	1130902	1131543	.	+	.	ID=gene1073;Name=azo1051;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1051
AM406670.1	EMBL	CDS	1130902	1131543	.	+	0	ID=cds1049;Parent=gene1073;Dbxref=EnsemblGenomes-Gn:azo1051,EnsemblGenomes-Tr:CAL93668,InterPro:IPR007730,UniProtKB/TrEMBL:A1K4B3,NCBI_GP:CAL93668.1;Name=CAL93668.1;Note=Conserved hypothetical membrane proteine. Homology to BB2598 of Bordetella bronchiseptica of 37%25 (trembl|Q7WJA1(SRS)). Has 2 copies of PF05036%2C Sporulation related repeat%3BIPR007730%2C SPOR%3B This 35 residue repeat is found in proteins involved in sporulation and cell division such as FtsN%2C DedD%2C and CwlM. This repeat might be involved in binding peptidoglycan (Bateman A pers obs). FtsN is an essential cell division protein with a simple bitopic topology%2C a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localises to the septum ring complex. The CwlM gene is a cell wall hydrolase so this repeat may help localise the protein to the cell wall. no signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93668.1;transl_table=11
AM406670.1	EMBL	gene	1131554	1132045	.	+	.	ID=gene1074;Name=cvpA;gbkey=Gene;gene=cvpA;gene_biotype=protein_coding;locus_tag=azo1052
AM406670.1	EMBL	CDS	1131554	1132045	.	+	0	ID=cds1050;Parent=gene1074;Dbxref=EnsemblGenomes-Gn:azo1052,EnsemblGenomes-Tr:CAL93669,GOA:A1K4B4,InterPro:IPR003825,UniProtKB/TrEMBL:A1K4B4,NCBI_GP:CAL93669.1;Name=CAL93669.1;Note=Colicin V production protein (dedE protein) (Pur regulon 18 kDa protein). REQUIRED FOR COLICIN V PRODUCTION FROM PLASMID INCFI COLV3-K30. TREMBL:Q82WH7: 29%25 identity%2C38%25 similarity InterPro:IPR003825%3B Colicin_V. Pfam:PF02674%3B Colicin_V TIGR00304: conserved hypothetical protei Signal peptide present (Signal P predicted) TMH's 4 (TMHMM predicted)%3B~High confidence in function and specificity;gbkey=CDS;gene=cvpA;product=putative colicin V production protein;protein_id=CAL93669.1;transl_table=11
AM406670.1	EMBL	gene	1132057	1133586	.	+	.	ID=gene1075;Name=purF;gbkey=Gene;gene=purF;gene_biotype=protein_coding;locus_tag=azo1053
AM406670.1	EMBL	CDS	1132057	1133586	.	+	0	ID=cds1051;Parent=gene1075;Dbxref=EnsemblGenomes-Gn:azo1053,EnsemblGenomes-Tr:CAL93670,GOA:A1K4B5,InterPro:IPR000583,InterPro:IPR000836,InterPro:IPR005854,InterPro:IPR017932,InterPro:IPR029055,InterPro:IPR029057,UniProtKB/TrEMBL:A1K4B5,NCBI_GP:CAL93670.1;Name=CAL93670.1;Note=amidophosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (Q51342)%3B~High confidence in function and specificity;gbkey=CDS;gene=purF;product=amidophosphoribosyltransferase;protein_id=CAL93670.1;transl_table=11
AM406670.1	EMBL	gene	1133594	1134763	.	+	.	ID=gene1076;Name=metZ;gbkey=Gene;gene=metZ;gene_biotype=protein_coding;locus_tag=azo1054
AM406670.1	EMBL	CDS	1133594	1134763	.	+	0	ID=cds1052;Parent=gene1076;Dbxref=EnsemblGenomes-Gn:azo1054,EnsemblGenomes-Tr:CAL93671,GOA:A1K4B6,InterPro:IPR000277,InterPro:IPR006234,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K4B6,NCBI_GP:CAL93671.1;Name=CAL93671.1;Note=A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine%2C homocysteine and methionine have been shown to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes. Similar to trembl|Q82WH6 (72%25) and to sprot|CGL_MOUSE (36%25). Pfam (PF01053): Cys/Met metabolism pyridoxal-phosphate-dependent enzymes%3B~Family membership;gbkey=CDS;gene=metZ;product=Cys/Met metabolism pyridoxal-phosphate-dependent enzyme;protein_id=CAL93671.1;transl_table=11
AM406670.1	EMBL	gene	1134854	1135654	.	-	.	ID=gene1077;Name=lpxH;gbkey=Gene;gene=lpxH;gene_biotype=protein_coding;locus_tag=azo1055
AM406670.1	EMBL	CDS	1134854	1135654	.	-	0	ID=cds1053;Parent=gene1077;Dbxref=EnsemblGenomes-Gn:azo1055,EnsemblGenomes-Tr:CAL93672,GOA:A1K4B7,InterPro:IPR010138,InterPro:IPR024654,InterPro:IPR029052,UniProtKB/TrEMBL:A1K4B7,NCBI_GP:CAL93672.1;Name=CAL93672.1;Note=UDP-2%2C3-diacylglucosamine hydrolase [lpxH]%2C 54%25 identity to TrEMBL%3BQ5P1I2 Has Pfam%3BPF00149%2CCalcineurin-like phosphoesterase%3B This family includes a diverse range of phosphoesterases%2C including protein phosphoserine phosphatases%2C nucleotidases%2C sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD P13457 or yeast MRE11 P32829. The most conserved regions in this superfamily centre around the metal chelating residues. InterPro%3BIPR004843%2C M-pesterase.;gbkey=CDS;gene=lpxH;product=putative UDP-2%2C3-diacylglucosamine hydrolase;protein_id=CAL93672.1;transl_table=11
AM406670.1	EMBL	gene	1135647	1136141	.	-	.	ID=gene1078;Name=ppiB;gbkey=Gene;gene=ppiB;gene_biotype=protein_coding;locus_tag=azo1056
AM406670.1	EMBL	CDS	1135647	1136141	.	-	0	ID=cds1054;Parent=gene1078;Dbxref=EnsemblGenomes-Gn:azo1056,EnsemblGenomes-Tr:CAL93673,GOA:A1K4B8,InterPro:IPR002130,InterPro:IPR020892,InterPro:IPR029000,UniProtKB/TrEMBL:A1K4B8,NCBI_GP:CAL93673.1;Name=CAL93673.1;Note=Peptidyl-prolyl cis-trans isomerase B. Homology to ppiB of E.coli of 71%25 (sprot|PPIB_ECOLI). PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. InterPro: Cyclophilin-type peptidyl-prolyl cis-trans isomerase(IPR002130) Pfam: Cyclophilin-type peptidyl-prolyl cis-trans isomerase no signal peptide no TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=ppiB;product=peptidyl-prolyl cis-trans isomerase B;protein_id=CAL93673.1;transl_table=11
AM406670.1	EMBL	gene	1136158	1136739	.	-	.	ID=gene1079;Name=ppiA;gbkey=Gene;gene=ppiA;gene_biotype=protein_coding;locus_tag=azo1057
AM406670.1	EMBL	CDS	1136158	1136739	.	-	0	ID=cds1055;Parent=gene1079;Dbxref=EnsemblGenomes-Gn:azo1057,EnsemblGenomes-Tr:CAL93674,GOA:A1K4B9,InterPro:IPR002130,InterPro:IPR020892,InterPro:IPR029000,UniProtKB/TrEMBL:A1K4B9,NCBI_GP:CAL93674.1;Name=CAL93674.1;Note=Probable peptidyl-prolyl cis-trans isomerase. Homology to ppiA of E. coli of 56%25 (SWISSPROT:PPIA_ECOLI) PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. InterPro: Cyclophilin-type peptidyl-prolyl cis-trans isomerase (IPR002130) Pfam: Cyclophilin-type peptidyl-prolyl cis-trans isomerase Signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ppiA;product=probable peptidyl-prolyl cis-trans isomerase A;protein_id=CAL93674.1;transl_table=11
AM406670.1	EMBL	gene	1136784	1137980	.	-	.	ID=gene1080;Name=azo1058;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1058
AM406670.1	EMBL	CDS	1136784	1137980	.	-	0	ID=cds1056;Parent=gene1080;Dbxref=EnsemblGenomes-Gn:azo1058,EnsemblGenomes-Tr:CAL93675,GOA:A1K4C0,InterPro:IPR005490,UniProtKB/TrEMBL:A1K4C0,NCBI_GP:CAL93675.1;Name=CAL93675.1;Note=Conserved hypothetical secreted proteins. Homology to of Dechloromonas aromatica of 56%25 (gi|41723709|ref|ZP_00150619.1|(NBCI ENTREZ)). Signal Peptide Present. No TMH present. Has PF03734:(IPR005490)ErfK/YbiS/YcfS/YnhG%3BThis family of proteins are found in a range of bacteria. The conserved region contains a conserved histidine and cysteine%2Csuggesting that these proteins have an enzymatic activity. Several members of this family contain peptidoglycan binding domains. So these proteins may use peptidoglycan or a precursor as a substrate.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93675.1;transl_table=11
AM406670.1	EMBL	gene	1137983	1139239	.	-	.	ID=gene1081;Name=azo1059;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1059
AM406670.1	EMBL	CDS	1137983	1139239	.	-	0	ID=cds1057;Parent=gene1081;Dbxref=EnsemblGenomes-Gn:azo1059,EnsemblGenomes-Tr:CAL93676,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR019734,InterPro:IPR027843,UniProtKB/TrEMBL:A1K4C1,NCBI_GP:CAL93676.1;Name=CAL93676.1;Note=Conserved hypothetical secreted protein. Homology to Daro03002816 of Dechloromonas aromatica of 42%25 (gi|53730051|ref|ZP_00348646.1|(NBCI ENTREZ)). domain structure: 59 aa - 92 aa TRP%3B 93 aa- 126 aa TRP%3B 127 aa -155 aa TRP. InterPro: TPR repeat (IPR001440)%3B Type I antifreeze protein (IPR000104). Pfam: TRP Domain. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93676.1;transl_table=11
AM406670.1	EMBL	gene	1139410	1140792	.	+	.	ID=gene1082;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=azo1060
AM406670.1	EMBL	CDS	1139410	1140792	.	+	0	ID=cds1058;Parent=gene1082;Dbxref=EnsemblGenomes-Gn:azo1060,EnsemblGenomes-Tr:CAL93677,GOA:A1K4C2,InterPro:IPR009080,InterPro:IPR014729,InterPro:IPR015273,InterPro:IPR015803,InterPro:IPR024909,UniProtKB/TrEMBL:A1K4C2,NCBI_GP:CAL93677.1;Name=CAL93677.1;Note=Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA ligase) (CysRS). InterPro: Cysteinyl-tRNA synthetase cysS: cysteinyl-tRNA synthetase%3B~High confidence in function and specificity;gbkey=CDS;gene=cysS;product=CysS protein;protein_id=CAL93677.1;transl_table=11
AM406670.1	EMBL	gene	1140857	1142011	.	-	.	ID=gene1083;Name=azo1061;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1061
AM406670.1	EMBL	CDS	1140857	1142011	.	-	0	ID=cds1059;Parent=gene1083;Dbxref=EnsemblGenomes-Gn:azo1061,EnsemblGenomes-Tr:CAL93678,GOA:A1K4C3,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1K4C3,NCBI_GP:CAL93678.1;Name=CAL93678.1;Note=This family includes extracellular ligand binding domains of a wide range of receptors and it also includes the bacterial amino acid binding proteins of known structure. Similar to trembl|Q8XQ39 (40%25) and to trembl|Q89G00 (32%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Family membership;gbkey=CDS;product=extracellular ligand binding protein;protein_id=CAL93678.1;transl_table=11
AM406670.1	EMBL	gene	1142201	1143328	.	-	.	ID=gene1084;Name=dnaJ1;gbkey=Gene;gene=dnaJ1;gene_biotype=protein_coding;locus_tag=azo1062
AM406670.1	EMBL	CDS	1142201	1143328	.	-	0	ID=cds1060;Parent=gene1084;Dbxref=EnsemblGenomes-Gn:azo1062,EnsemblGenomes-Tr:CAL93679,GOA:A1K4C4,InterPro:IPR001305,InterPro:IPR001623,InterPro:IPR002939,InterPro:IPR008971,InterPro:IPR012724,InterPro:IPR018253,NCBI_GP:CAL93679.1;Name=CAL93679.1;Note=Chaperone protein dnaJ (Heat shock protein J) (HSP40). Homology to dnaJ of E. coli of 61%25 (sprot|DNAJ_ECOLI) Acts as a co-chaperone. Stimulates jointly with grpE the ATPase activity of dnaK (By similarity). Pfam: DnaJ domain%3B DnaJ central domain (4 repeats)%3B DnaJ terminal region no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=dnaJ1;product=chaperone protein DnaJ;protein_id=CAL93679.1;transl_table=11
AM406670.1	EMBL	gene	1143424	1145349	.	-	.	ID=gene1085;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=azo1063
AM406670.1	EMBL	CDS	1143424	1145349	.	-	0	ID=cds1061;Parent=gene1085;Dbxref=EnsemblGenomes-Gn:azo1063,EnsemblGenomes-Tr:CAL93680,GOA:A1K4C5,InterPro:IPR012725,InterPro:IPR013126,InterPro:IPR018181,InterPro:IPR029047,InterPro:IPR029048,NCBI_GP:CAL93680.1;Name=CAL93680.1;Note=Chaperone protein dnaK. Homology to dnaK of E. coli of 74%25 (sprot|DNAK_ECOLI). Acts as a chaperone (By similarity). InterPro: Heat shock protein hsp70 (IPR001023) Hsp70 protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=dnaK;product=chaperone protein DnaK;protein_id=CAL93680.1;transl_table=11
AM406670.1	EMBL	gene	1145464	1146030	.	-	.	ID=gene1086;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;locus_tag=azo1064
AM406670.1	EMBL	CDS	1145464	1146030	.	-	0	ID=cds1062;Parent=gene1086;Dbxref=EnsemblGenomes-Gn:azo1064,EnsemblGenomes-Tr:CAL93681,GOA:A1K4C6,InterPro:IPR000740,InterPro:IPR009012,InterPro:IPR013805,NCBI_GP:CAL93681.1;Name=CAL93681.1;Note=Probable heat shock protein GrpE. Homology to grpE of L. pneumophila of 42%25 (sprot|GRPE_LEGPN) Stimulates jointly with dnaJ the ATPAse activity of dnaK. Helps to release ADP from dnaK thus allowing dnaK to recycle more efficiently (By similarity). Pfam: GrpE no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=grpE;product=probable heat shock protein GrpE;protein_id=CAL93681.1;transl_table=11
AM406670.1	EMBL	gene	1146167	1146412	.	+	.	ID=gene1087;Name=azo1065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1065
AM406670.1	EMBL	CDS	1146167	1146412	.	+	0	ID=cds1063;Parent=gene1087;Dbxref=EnsemblGenomes-Gn:azo1065,EnsemblGenomes-Tr:CAL93682,InterPro:IPR019180,UniProtKB/TrEMBL:A1K4C7,NCBI_GP:CAL93682.1;Name=CAL93682.1;Note=Conserved hypothetical protein. Homology to an orf of Polaromonas sp. JS666 of 43%25 ( ZP_00361754). No domains predicted. No singal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93682.1;transl_table=11
AM406670.1	EMBL	gene	1146520	1149153	.	+	.	ID=gene1088;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;locus_tag=azo1066
AM406670.1	EMBL	CDS	1146520	1149153	.	+	0	ID=cds1064;Parent=gene1088;Dbxref=EnsemblGenomes-Gn:azo1066,EnsemblGenomes-Tr:CAL93683,GOA:A1K4C8,InterPro:IPR002205,InterPro:IPR005743,InterPro:IPR006691,InterPro:IPR013757,InterPro:IPR013758,InterPro:IPR013760,InterPro:IPR024946,UniProtKB/TrEMBL:A1K4C8,NCBI_GP:CAL93683.1;Name=CAL93683.1;Note=DNA gyrase subunit A (EC 5.99.1.3). DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings including catenanes and knotted rings. recN: DNA repair protein RecN%3B~High confidence in function and specificity;gbkey=CDS;gene=gyrA;product=DNA topoisomerase (ATP-hydrolysing);protein_id=CAL93683.1;transl_table=11
AM406670.1	EMBL	gene	1149150	1150247	.	+	.	ID=gene1089;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;locus_tag=azo1067
AM406670.1	EMBL	CDS	1149150	1150247	.	+	0	ID=cds1065;Parent=gene1089;Dbxref=EnsemblGenomes-Gn:azo1067,EnsemblGenomes-Tr:CAL93684,GOA:A1K4C9,InterPro:IPR000192,InterPro:IPR003248,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR020578,InterPro:IPR022278,UniProtKB/TrEMBL:A1K4C9,NCBI_GP:CAL93684.1;Name=CAL93684.1;Note=Phosphoserine transaminase. catalytic activity: o-phospho-l-serine + 2-oxoglutarate %3D 3-phosphonooxypyruvate + l-glutamate (by similarity). cofactor: pyridoxal phosphate (by similarity). pathway: required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine (by similarity). similarity: belongs to the class-v pyridoxal-phosphate-dependent aminotransferase family. InterPro: Aminotransferase class-V%3B~High confidence in function and specificity;gbkey=CDS;gene=serC;product=phosphoserine transaminase.;protein_id=CAL93684.1;transl_table=11
AM406670.1	EMBL	gene	1150262	1151326	.	+	.	ID=gene1090;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=protein_coding;locus_tag=azo1068
AM406670.1	EMBL	CDS	1150262	1151326	.	+	0	ID=cds1066;Parent=gene1090;Dbxref=EnsemblGenomes-Gn:azo1068,EnsemblGenomes-Tr:CAL93685,GOA:A1K4D0,InterPro:IPR001086,InterPro:IPR002701,InterPro:IPR002912,InterPro:IPR008242,InterPro:IPR010957,InterPro:IPR018528,InterPro:IPR020822,UniProtKB/TrEMBL:A1K4D0,NCBI_GP:CAL93685.1;Name=CAL93685.1;Note=Bifunctional chorismate mutase/prephenate dehydratase P-protein%2C pheA%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=pheA;product=chorismate mutase/prephenate dehydratase;protein_id=CAL93685.1;transl_table=11
AM406670.1	EMBL	gene	1151344	1152441	.	+	.	ID=gene1091;Name=hisC1;gbkey=Gene;gene=hisC1;gene_biotype=protein_coding;locus_tag=azo1069
AM406670.1	EMBL	CDS	1151344	1152441	.	+	0	ID=cds1067;Parent=gene1091;Dbxref=EnsemblGenomes-Gn:azo1069,EnsemblGenomes-Tr:CAL93686,GOA:A1K4D1,InterPro:IPR004839,InterPro:IPR005861,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K4D1,NCBI_GP:CAL93686.1;Name=CAL93686.1;Note=Histidinol-phosphate aminotransferase 2%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=hisC1;product=histidinol-phosphate aminotransferase;protein_id=CAL93686.1;transl_table=11
AM406670.1	EMBL	gene	1152457	1153347	.	+	.	ID=gene1092;Name=tyrA;gbkey=Gene;gene=tyrA;gene_biotype=protein_coding;locus_tag=azo1070
AM406670.1	EMBL	CDS	1152457	1153347	.	+	0	ID=cds1068;Parent=gene1092;Dbxref=EnsemblGenomes-Gn:azo1070,EnsemblGenomes-Tr:CAL93687,GOA:A1K4D2,InterPro:IPR003099,InterPro:IPR008927,InterPro:IPR016040,UniProtKB/TrEMBL:A1K4D2,NCBI_GP:CAL93687.1;Name=CAL93687.1;Note=Prephenate dehydrogenases are involved in tyrosine biosynthesis. Similar to trembl|Q7NSL5 (54%25) and to trembl|Q82XD9 (47%25). Pfam: PDH%2C Prephenate dehydrogenase. TMHMM reporting one Tmhelix. SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=tyrA;product=probable prephenate dehydrogenase;protein_id=CAL93687.1;transl_table=11
AM406670.1	EMBL	gene	1153344	1155305	.	+	.	ID=gene1093;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;locus_tag=azo1071
AM406670.1	EMBL	CDS	1153344	1155305	.	+	0	ID=cds1069;Parent=gene1093;Dbxref=EnsemblGenomes-Gn:azo1071,EnsemblGenomes-Tr:CAL93688,GOA:A1K4D3,InterPro:IPR001986,InterPro:IPR003136,InterPro:IPR006264,InterPro:IPR011994,InterPro:IPR013792,InterPro:IPR023193,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4D3,NCBI_GP:CAL93688.1;Name=CAL93688.1;Note=EPSP synthase catalyzes the sixth step in the biosynthesis from chorismate of the aromatic amino acids (the shikimate pathway) in bacteria. Similar to sprot|AROA_RALSO (46%25) and to trembl|Q7NTK6 (47%25). TIGRfam: (TIGR00017): Cytidylate kinase Pfam (PF02224): Cytidylate kinase Pfam (PF00275): EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)%3B~Specificity unclear;gbkey=CDS;gene=aroA;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=CAL93688.1;transl_table=11
AM406670.1	EMBL	gene	1155409	1157115	.	+	.	ID=gene1094;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=azo1072
AM406670.1	EMBL	CDS	1155409	1157115	.	+	0	ID=cds1070;Parent=gene1094;Dbxref=EnsemblGenomes-Gn:azo1072,EnsemblGenomes-Tr:CAL93689,GOA:A1K4D4,InterPro:IPR000110,InterPro:IPR003029,InterPro:IPR012340,InterPro:IPR022967,UniProtKB/TrEMBL:A1K4D4,NCBI_GP:CAL93689.1;Name=CAL93689.1;Note=30S ribosomal protein S1. BINDS MRNA%3B THUS FACILITATING RECOGNITION OF THE INITIATION POINT. IT IS NEEDED TO TRANSLATE MRNA WITH A SHORT SHINE-DALGARNO (SD) PURINE-RICH SEQUENCE.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsA;product=30S ribosomal protein S1;protein_id=CAL93689.1;transl_table=11
AM406670.1	EMBL	gene	1157126	1157410	.	+	.	ID=gene1095;Name=ihfB;gbkey=Gene;gene=ihfB;gene_biotype=protein_coding;locus_tag=azo1073
AM406670.1	EMBL	CDS	1157126	1157410	.	+	0	ID=cds1071;Parent=gene1095;Dbxref=EnsemblGenomes-Gn:azo1073,EnsemblGenomes-Tr:CAL93690,GOA:A1K4D5,InterPro:IPR000119,InterPro:IPR005685,InterPro:IPR010992,NCBI_GP:CAL93690.1;Name=CAL93690.1;Note=Probable integration host factor%2C beta-subunit (IHF-beta). Homology to ihfB of P. aeruginosa of 64%25 (sprot|IHFB_PSEAE(SRS)) Bacteria synthesize a set of small%2C usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins. The exact function os these proteins is not yet clear but they are capable of wrapping DNA and stabilizing it from denaturation under extreme environmental conditions. Theprotein exists as a dimer and two beta-arms function as the non-specific binding site for bacterial DNA. InterPro: Bacterial histone-like DNA-binding protein (IPR000119) Pfam: Pacterial DNA-binding protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ihfB;product=probable integration host factor%2C beta-subunit;protein_id=CAL93690.1;transl_table=11
AM406670.1	EMBL	gene	1157501	1157806	.	+	.	ID=gene1096;Name=azo1074;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1074
AM406670.1	EMBL	CDS	1157501	1157806	.	+	0	ID=cds1072;Parent=gene1096;Dbxref=EnsemblGenomes-Gn:azo1074,EnsemblGenomes-Tr:CAL93691,InterPro:IPR010445,UniProtKB/TrEMBL:A1K4D6,NCBI_GP:CAL93691.1;Name=CAL93691.1;Note=38%25 identity with Hypothetical protein from Chromobacterium violaceum TrEMBL:Q7NTL0%2CGenename CV3044 Signal Peptide present TMHMM reporting for transmembrane helices:2 present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93691.1;transl_table=11
AM406670.1	EMBL	gene	1157814	1158989	.	+	.	ID=gene1097;Name=azo1075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1075
AM406670.1	EMBL	CDS	1157814	1158989	.	+	0	ID=cds1073;Parent=gene1097;Dbxref=EnsemblGenomes-Gn:azo1075,EnsemblGenomes-Tr:CAL93692,GOA:A1K4D7,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR019734,UniProtKB/TrEMBL:A1K4D7,NCBI_GP:CAL93692.1;Name=CAL93692.1;Note=Putative N-acetylglucosaminyl transferase. Enzyme that is involved in the catalysis of the reaction: UDP-N-acetyl-D-glucosamine + N-acetyl-D-glucosaminyl-diphosphodolichol %3D UDP + N%2CN''-diacetylchitobiosyldiphosphodolichol. 36%25 Cas_TM1810_C.IPR001574%3B RIP.IPR001440%3B TPR.IPR008941%3B TPR-like.InterPro: TPR repeat TIGRFAMs:TIGR01870%3B cas_TM1810%3B 1. TMHx:1%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical transferase protein;protein_id=CAL93692.1;transl_table=11
AM406670.1	EMBL	gene	1159107	1160429	.	+	.	ID=gene1098;Name=ugd;gbkey=Gene;gene=ugd;gene_biotype=protein_coding;locus_tag=azo1076
AM406670.1	EMBL	CDS	1159107	1160429	.	+	0	ID=cds1074;Parent=gene1098;Dbxref=EnsemblGenomes-Gn:azo1076,EnsemblGenomes-Tr:CAL93693,GOA:A1K4D8,InterPro:IPR001732,InterPro:IPR008927,InterPro:IPR014026,InterPro:IPR014027,InterPro:IPR016040,InterPro:IPR017476,InterPro:IPR028357,UniProtKB/TrEMBL:A1K4D8,NCBI_GP:CAL93693.1;Name=CAL93693.1;Note=UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH).%3B~High confidence in function and specificity;gbkey=CDS;gene=ugd;product=UDP-glucose 6-dehydrogenase;protein_id=CAL93693.1;transl_table=11
AM406670.1	EMBL	gene	1160583	1161473	.	+	.	ID=gene1099;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=protein_coding;locus_tag=azo1077
AM406670.1	EMBL	CDS	1160583	1161473	.	+	0	ID=cds1075;Parent=gene1099;Dbxref=EnsemblGenomes-Gn:azo1077,EnsemblGenomes-Tr:CAL93694,GOA:A1K4D9,InterPro:IPR001216,InterPro:IPR001926,InterPro:IPR005856,InterPro:IPR005858,UniProtKB/TrEMBL:A1K4D9,NCBI_GP:CAL93694.1;Name=CAL93694.1;Note=Cysteine synthase chloroplast precursor%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=cysM;product=cysteine synthase B;protein_id=CAL93694.1;transl_table=11
AM406670.1	EMBL	gene	1161512	1162306	.	+	.	ID=gene1100;Name=azo1078;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1078
AM406670.1	EMBL	CDS	1161512	1162306	.	+	0	ID=cds1076;Parent=gene1100;Dbxref=EnsemblGenomes-Gn:azo1078,EnsemblGenomes-Tr:CAL93695,GOA:A1K4E0,InterPro:IPR012337,InterPro:IPR019288,UniProtKB/TrEMBL:A1K4E0,NCBI_GP:CAL93695.1;Name=CAL93695.1;Note=Probable DNA polymerase epsilon catalytic subunit A (EC 2.7.7.7) (DNA polymerase II subunit A). TIGR00099: conserved hypothetical protein.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93695.1;transl_table=11
AM406670.1	EMBL	gene	1162391	1162467	.	+	.	ID=gene1101;Name=tRNA-Val;gbkey=Gene;gene=tRNA-Val;gene_biotype=tRNA;locus_tag=azo_tRNA_0021
AM406670.1	EMBL	tRNA	1162391	1162467	.	+	.	ID=rna24;Parent=gene1101;anticodon=(pos:1162425..1162427);gbkey=tRNA;gene=tRNA-Val;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Val
AM406670.1	EMBL	exon	1162391	1162467	.	+	.	ID=id25;Parent=rna24;anticodon=(pos:1162425..1162427);gbkey=tRNA;gene=tRNA-Val;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Val
AM406670.1	EMBL	gene	1162660	1164576	.	+	.	ID=gene1102;Name=azo1079;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1079
AM406670.1	EMBL	CDS	1162660	1164576	.	+	0	ID=cds1077;Parent=gene1102;Dbxref=EnsemblGenomes-Gn:azo1079,EnsemblGenomes-Tr:CAL93696,GOA:A1K4E1,InterPro:IPR002314,InterPro:IPR002320,InterPro:IPR004095,InterPro:IPR004154,InterPro:IPR006195,InterPro:IPR012675,InterPro:IPR012676,InterPro:IPR012947,InterPro:IPR018163,NCBI_GP:CAL93696.1;Name=CAL93696.1;Note=Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS).%3B~High confidence in function and specificity;gbkey=CDS;product=ThrS protein;protein_id=CAL93696.1;transl_table=11
AM406670.1	EMBL	gene	1164657	1165127	.	+	.	ID=gene1103;Name=infC;gbkey=Gene;gene=infC;gene_biotype=protein_coding;locus_tag=azo1080
AM406670.1	EMBL	CDS	1164657	1165127	.	+	0	ID=cds1078;Parent=gene1103;Dbxref=EnsemblGenomes-Gn:azo1080,EnsemblGenomes-Tr:CAL93697,GOA:A1K4E2,InterPro:IPR001288,InterPro:IPR019813,InterPro:IPR019814,InterPro:IPR019815,UniProtKB/TrEMBL:A1K4E2,NCBI_GP:CAL93697.1;Name=CAL93697.1;Note=Translation initiation factor IF-3. IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.%3B~High confidence in function and specificity;gbkey=CDS;gene=infC;product=translation initiation factor IF-3;protein_id=CAL93697.1;transl_table=11
AM406670.1	EMBL	gene	1165275	1165472	.	+	.	ID=gene1104;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=azo1081
AM406670.1	EMBL	CDS	1165275	1165472	.	+	0	ID=cds1079;Parent=gene1104;Dbxref=EnsemblGenomes-Gn:azo1081,EnsemblGenomes-Tr:CAL93698,GOA:A1K4E3,InterPro:IPR001706,InterPro:IPR018265,InterPro:IPR021137,NCBI_GP:CAL93698.1;Name=CAL93698.1;Note=50S ribosomal protein L35.%3B~Family membership;gbkey=CDS;gene=rpmI;product=50S ribosomal protein L35;protein_id=CAL93698.1;transl_table=11
AM406670.1	EMBL	gene	1165485	1165844	.	+	.	ID=gene1105;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=azo1082
AM406670.1	EMBL	CDS	1165485	1165844	.	+	0	ID=cds1080;Parent=gene1105;Dbxref=EnsemblGenomes-Gn:azo1082,EnsemblGenomes-Tr:CAL93699,GOA:A1K4E4,InterPro:IPR005813,NCBI_GP:CAL93699.1;Name=CAL93699.1;Note=50S ribosomal protein L20. This protein binds directly to 23s ribosomal RNA and is necessary for the in vitro assembly process of the 50s ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=rplT;product=50S ribosomal protein L20;protein_id=CAL93699.1;transl_table=11
AM406670.1	EMBL	gene	1165911	1166942	.	+	.	ID=gene1106;Name=pheS;gbkey=Gene;gene=pheS;gene_biotype=protein_coding;locus_tag=azo1083
AM406670.1	EMBL	CDS	1165911	1166942	.	+	0	ID=cds1081;Parent=gene1106;Dbxref=EnsemblGenomes-Gn:azo1083,EnsemblGenomes-Tr:CAL93700,GOA:A1K4E5,InterPro:IPR002319,InterPro:IPR004188,InterPro:IPR004529,InterPro:IPR006195,InterPro:IPR010978,InterPro:IPR022911,NCBI_GP:CAL93700.1;Name=CAL93700.1;Note=Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase alpha chain) (PheRS). InterPro: Phenylalanyl-tRNA synthetase alpha subunit pheS: phenylalanyl-tRNA synthetase a%3B~High confidence in function and specificity;gbkey=CDS;gene=pheS;product=phenylalanyl-tRNA synthetase alpha chain;protein_id=CAL93700.1;transl_table=11
AM406670.1	EMBL	gene	1166949	1169339	.	+	.	ID=gene1107;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=azo1084
AM406670.1	EMBL	CDS	1166949	1169339	.	+	0	ID=cds1082;Parent=gene1107;Dbxref=EnsemblGenomes-Gn:azo1084,EnsemblGenomes-Tr:CAL93701,GOA:A1K4E6,InterPro:IPR002547,InterPro:IPR004532,InterPro:IPR005121,InterPro:IPR005146,InterPro:IPR005147,InterPro:IPR009061,InterPro:IPR012340,InterPro:IPR020825,UniProtKB/TrEMBL:A1K4E6,NCBI_GP:CAL93701.1;Name=CAL93701.1;Note=Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase beta chain) (PheRS)%3B~High confidence in function and specificity;gbkey=CDS;gene=pheT;product=phenylalanyl-tRNA synthetase beta chain;protein_id=CAL93701.1;transl_table=11
AM406670.1	EMBL	gene	1169336	1169647	.	+	.	ID=gene1108;Name=ihfA;gbkey=Gene;gene=ihfA;gene_biotype=protein_coding;locus_tag=azo1085
AM406670.1	EMBL	CDS	1169336	1169647	.	+	0	ID=cds1083;Parent=gene1108;Dbxref=EnsemblGenomes-Gn:azo1085,EnsemblGenomes-Tr:CAL93702,GOA:A1K4E7,InterPro:IPR000119,InterPro:IPR005684,InterPro:IPR010992,InterPro:IPR020816,NCBI_GP:CAL93702.1;Name=CAL93702.1;Note=Integration host factor alpha-subunit (IHF-alpha). This protein is one of the two subunits of integration host factor a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control (By similarity). InterPro: Bacterial histone-like DNA-binding protein.%3B~High confidence in function and specificity;gbkey=CDS;gene=ihfA;product=integration host factor alpha-subunit;protein_id=CAL93702.1;transl_table=11
AM406670.1	EMBL	gene	1169628	1170008	.	+	.	ID=gene1109;Name=azo1086;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1086
AM406670.1	EMBL	CDS	1169628	1170008	.	+	0	ID=cds1084;Parent=gene1109;Dbxref=EnsemblGenomes-Gn:azo1086,EnsemblGenomes-Tr:CAL93703,GOA:A1K4E8,InterPro:IPR000551,InterPro:IPR009061,UniProtKB/TrEMBL:A1K4E8,NCBI_GP:CAL93703.1;Name=CAL93703.1;Note=Putative MerR-family transcriptional regulator%2Csimilar toTREMBL: trembl|Q83C17 (51%25 Coxiella burnetii%2Ccbu1319) Pfam: PF00376 MerR family regulatory protein. HTH reporting nucleic acid binding motif.;gbkey=CDS;product=putative MerR-family transcriptional regulator;protein_id=CAL93703.1;transl_table=11
AM406670.1	EMBL	gene	1170058	1170134	.	+	.	ID=gene1110;Name=tRNA-Pro;gbkey=Gene;gene=tRNA-Pro;gene_biotype=tRNA;locus_tag=azo_tRNA_0022
AM406670.1	EMBL	tRNA	1170058	1170134	.	+	.	ID=rna25;Parent=gene1110;anticodon=(pos:1170092..1170094);gbkey=tRNA;gene=tRNA-Pro;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Pro
AM406670.1	EMBL	exon	1170058	1170134	.	+	.	ID=id26;Parent=rna25;anticodon=(pos:1170092..1170094);gbkey=tRNA;gene=tRNA-Pro;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Pro
AM406670.1	EMBL	gene	1170324	1171067	.	+	.	ID=gene1111;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=azo1087
AM406670.1	EMBL	CDS	1170324	1171067	.	+	0	ID=cds1085;Parent=gene1111;Dbxref=EnsemblGenomes-Gn:azo1087,EnsemblGenomes-Tr:CAL93704,GOA:A1K4E9,InterPro:IPR002828,NCBI_GP:CAL93704.1;Name=CAL93704.1;Note=Acid phosphatase surE (EC 3.1.3.2). sprot|SURE_NITEU (Q82VV9) Acid phosphatase surE -70%25 identity%2C 80%25 similarity. Interpro:Members of this family are acid phosphatases%2C EC: 3.1.3.2 [1]. In bacteria they may be involved in the stress response [2]. Escherichia coli cells with the surE gene disrupted are found to survive poorly in stationary phase surE: stationary-phase survival protein S TIGRFAM: taut (tautomerase)%2C MIP (family of channel proteins)%2C CynX (Cyanate transport system proteins) TMHMM predicted transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;gene=surE;product=phosphoric-monoester phosphohydrolase;protein_id=CAL93704.1;transl_table=11
AM406670.1	EMBL	gene	1171112	1171717	.	+	.	ID=gene1112;Name=pcm2;gbkey=Gene;gene=pcm2;gene_biotype=protein_coding;locus_tag=azo1088
AM406670.1	EMBL	CDS	1171112	1171717	.	+	0	ID=cds1086;Parent=gene1112;Dbxref=EnsemblGenomes-Gn:azo1088,EnsemblGenomes-Tr:CAL93705,GOA:A1K4F0,InterPro:IPR000682,InterPro:IPR029063,NCBI_GP:CAL93705.1;Name=CAL93705.1;Note=Protein-L-isoaspartate O-methyltransferase%2C 56%25 Identity to TrEMBL%3BQ7VXN1.51%25 Identity to TrEMBL%3BQ82VW0%2CQ7NRV0. SProt%3BQ886L4(52%25 Idnetity)%2C Q87LQ6(51%25)%2CP24206(47%25) Has PF01135%2C Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)%3BIPR000682%2C PCMT%3B Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MEDLINE: (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins%3B the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues.;gbkey=CDS;gene=pcm2;product=protein-L-isoaspartate (D-aspartate) O-methyltransferase;protein_id=CAL93705.1;transl_table=11
AM406670.1	EMBL	gene	1171714	1172622	.	+	.	ID=gene1113;Name=nlpD;gbkey=Gene;gene=nlpD;gene_biotype=protein_coding;locus_tag=azo1089
AM406670.1	EMBL	CDS	1171714	1172622	.	+	0	ID=cds1087;Parent=gene1113;Dbxref=EnsemblGenomes-Gn:azo1089,EnsemblGenomes-Tr:CAL93706,InterPro:IPR011055,InterPro:IPR016047,InterPro:IPR018392,UniProtKB/TrEMBL:A1K4F1,NCBI_GP:CAL93706.1;Name=CAL93706.1;Note=Conserved hypothetical lipoprotein. Homology to nlpD of R. gelatinosus of 43%25 (trembl|Q9JP90) InterPro: Peptidase family M23/M37 (IPR002886)%3B LysM motif (IPR002482) Pfam: LysM domain%3B Peptidase family m23/M27 signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=nlpD;product=conserved hypothetical lipoprotein;protein_id=CAL93706.1;transl_table=11
AM406670.1	EMBL	gene	1172633	1173568	.	+	.	ID=gene1114;Name=rpoS;gbkey=Gene;gene=rpoS;gene_biotype=protein_coding;locus_tag=azo1090
AM406670.1	EMBL	CDS	1172633	1173568	.	+	0	ID=cds1088;Parent=gene1114;Dbxref=EnsemblGenomes-Gn:azo1090,EnsemblGenomes-Tr:CAL93707,GOA:A1K4F2,InterPro:IPR000943,InterPro:IPR007624,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR009042,InterPro:IPR011991,InterPro:IPR012761,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:A1K4F2,NCBI_GP:CAL93707.1;Name=CAL93707.1;Note=RNA polymerase sigma factor RpoS Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in acid resistance. Belongs to the sigma-70 factor family 50%25 1. PF04542 Sigma70_r2%3B 1. helixturnhelix HTH: reporting nucleic acid binding motif%3B~High confidence in function and specificity;gbkey=CDS;gene=rpoS;product=putative RNA polymerase sigma factor;protein_id=CAL93707.1;transl_table=11
AM406670.1	EMBL	gene	1173565	1174575	.	-	.	ID=gene1115;Name=mltB;gbkey=Gene;gene=mltB;gene_biotype=protein_coding;locus_tag=azo1091
AM406670.1	EMBL	CDS	1173565	1174575	.	-	0	ID=cds1089;Parent=gene1115;Dbxref=EnsemblGenomes-Gn:azo1091,EnsemblGenomes-Tr:CAL93708,GOA:A1K4F3,InterPro:IPR011757,InterPro:IPR023346,UniProtKB/TrEMBL:A1K4F3,NCBI_GP:CAL93708.1;Name=CAL93708.1;Note=Putative membrane-bound lytic murein transglycosylase. homology to mltb of E. coli of 38%25 (sprot|MLTB_ECOLI) Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division. no domains prediced signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=mltB;product=putative membrane-bound lytic murein transglycosylase;protein_id=CAL93708.1;transl_table=11
AM406670.1	EMBL	gene	1174572	1176551	.	-	.	ID=gene1116;Name=azo1092;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1092
AM406670.1	EMBL	CDS	1174572	1176551	.	-	0	ID=cds1090;Parent=gene1116;Dbxref=EnsemblGenomes-Gn:azo1092,EnsemblGenomes-Tr:CAL93709,InterPro:IPR002931,InterPro:IPR021878,InterPro:IPR025403,UniProtKB/TrEMBL:A1K4F4,NCBI_GP:CAL93709.1;Name=CAL93709.1;Note=Conserved hypotetical membrane protein. Homology to RSp0111 of R. solanacearum of 41%25 (trembl|Q8XTJ7(SRS)) Pfam: Transglutaminase-like superfamily signal peptide probable 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93709.1;transl_table=11
AM406670.1	EMBL	gene	1176544	1177527	.	-	.	ID=gene1117;Name=azo1093;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1093
AM406670.1	EMBL	CDS	1176544	1177527	.	-	0	ID=cds1091;Parent=gene1117;Dbxref=EnsemblGenomes-Gn:azo1093,EnsemblGenomes-Tr:CAL93710,InterPro:IPR002881,UniProtKB/TrEMBL:A1K4F5,NCBI_GP:CAL93710.1;Name=CAL93710.1;Note=Conserved hypothetical membrane protein. Homology to RS03012 of Ralstonia solanacearum of 40%25 (trembl|Q8XTJ8) InterPro: Protein of unknown function DUF58 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor%2C type A domain InterterPro: IPR002881%3B DUF58. Pfam: PF01882%3B DUF58%3B Non-secretory with low signal peptide probability (Signal P predicted). TMHMM predicted 2 transmembrane helices.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93710.1;transl_table=11
AM406670.1	EMBL	gene	1177527	1178444	.	-	.	ID=gene1118;Name=moxR1;gbkey=Gene;gene=moxR1;gene_biotype=protein_coding;locus_tag=azo1094
AM406670.1	EMBL	CDS	1177527	1178444	.	-	0	ID=cds1092;Parent=gene1118;Dbxref=EnsemblGenomes-Gn:azo1094,EnsemblGenomes-Tr:CAL93711,GOA:A1K4F6,InterPro:IPR003593,InterPro:IPR011703,InterPro:IPR016366,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4F6,NCBI_GP:CAL93711.1;Name=CAL93711.1;Note=MoxR protein (MxaR protein). MAY BE INVOLVED IN THE REGULATION OF FORMATION OF ACTIVE METHANOL DEHYDROGENASE. TREMBL:Q883V0: 60%25 identity%2C 73%25 similarity SMART: SM00382%3B AAA InterPro: IPR003593%3B AAA_ATPase. IPR001270%3B Chaprnin_clpA/B. IPR003442%3B UPF0079. Pfam: PF02367%3B UPF0079%3B Pfam: Mg_chelatase:Magnesium chelatase%2C subunit ChlI ruvB: Holliday junction DNA helicase Ru No signal peptide and transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;gene=moxR1;product=MoxR protein;protein_id=CAL93711.1;transl_table=11
AM406670.1	EMBL	gene	1178599	1179525	.	+	.	ID=gene1119;Name=azo1095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1095
AM406670.1	EMBL	CDS	1178599	1179525	.	+	0	ID=cds1093;Parent=gene1119;Dbxref=EnsemblGenomes-Gn:azo1095,EnsemblGenomes-Tr:CAL93712,InterPro:IPR000286,InterPro:IPR023801,UniProtKB/TrEMBL:A1K4F7,NCBI_GP:CAL93712.1;Name=CAL93712.1;Note=Histone deacetylases%2C acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of an ancient protein superfamily%2C TREMBL:Q7VZF1 (58%25 identity)%3B TREMBL:Q7NRU4 (57%25 identity). InterPro (IPR000286): Histone deacetylase family Pfam (PF00850): Histone deacetylase domain.%3B~Family membership;gbkey=CDS;product=histone deacetylase family protein;protein_id=CAL93712.1;transl_table=11
AM406670.1	EMBL	gene	1179632	1180510	.	+	.	ID=gene1120;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=azo1096
AM406670.1	EMBL	CDS	1179632	1180510	.	+	0	ID=cds1094;Parent=gene1120;Dbxref=EnsemblGenomes-Gn:azo1096,EnsemblGenomes-Tr:CAL93713,GOA:A1K4F8,InterPro:IPR002220,InterPro:IPR005263,InterPro:IPR013785,InterPro:IPR020624,InterPro:IPR020625,NCBI_GP:CAL93713.1;Name=CAL93713.1;Note=Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway. It catalyzes the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue. Similar to trembl|Q82SD7 (63%25) and to sprot|DAPA_ECOLI (51%25). Pfam (PF00701): Dihydrodipicolinate synthetase family%3B~High confidence in function and specificity;gbkey=CDS;gene=dapA;product=dihydrodipicolinate synthase;protein_id=CAL93713.1;transl_table=11
AM406670.1	EMBL	gene	1180537	1181676	.	+	.	ID=gene1121;Name=nlpB;gbkey=Gene;gene=nlpB;gene_biotype=protein_coding;locus_tag=azo1097
AM406670.1	EMBL	CDS	1180537	1181676	.	+	0	ID=cds1095;Parent=gene1121;Dbxref=EnsemblGenomes-Gn:azo1097,EnsemblGenomes-Tr:CAL93714,InterPro:IPR010653,UniProtKB/TrEMBL:A1K4F9,NCBI_GP:CAL93714.1;Name=CAL93714.1;Note=Putative lipoprotein. Homology to nlpB of E. coli of 20%25 (sprot|NLPB_ECOLI) This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential. Pfam: NlpB/DapX lipoprotein singal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=nlpB;product=putative lipoprotein;protein_id=CAL93714.1;transl_table=11
AM406670.1	EMBL	gene	1181789	1182073	.	-	.	ID=gene1122;Name=azo1098;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1098
AM406670.1	EMBL	CDS	1181789	1182073	.	-	0	ID=cds1096;Parent=gene1122;Dbxref=EnsemblGenomes-Gn:azo1098,EnsemblGenomes-Tr:CAL93715,UniProtKB/TrEMBL:A1K4G0,NCBI_GP:CAL93715.1;Name=CAL93715.1;Note=Conserved hypothetical secreted protein. Homology to NMB1523 of N.meningitidis of 50%25 (tremble:Q9JYL7) No domains predicted. No TMHs Signal Peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93715.1;transl_table=11
AM406670.1	EMBL	gene	1182332	1183447	.	-	.	ID=gene1123;Name=azo1099;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1099
AM406670.1	EMBL	CDS	1182332	1183447	.	-	0	ID=cds1097;Parent=gene1123;Dbxref=EnsemblGenomes-Gn:azo1099,EnsemblGenomes-Tr:CAL93716,InterPro:IPR003347,UniProtKB/TrEMBL:A1K4G1,NCBI_GP:CAL93716.1;Name=CAL93716.1;Note=Conserved hypothetical protein. Homology to CV3581 of C.violaceum of 48%25 (tremble:Q7NS46) SM00558%3BJmjC:Probable enzymes%2C but of unknown functions%2Cthat regulate chromatin reorganisation processes. No signal peptide or TMH present. lytR_cpsA_psr: cell envelope-related fu;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93716.1;transl_table=11
AM406670.1	EMBL	gene	1183539	1184840	.	+	.	ID=gene1124;Name=azo1100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1100
AM406670.1	EMBL	CDS	1183539	1184840	.	+	0	ID=cds1098;Parent=gene1124;Dbxref=EnsemblGenomes-Gn:azo1100,EnsemblGenomes-Tr:CAL93717,GOA:A1K4G2,InterPro:IPR001566,InterPro:IPR002792,InterPro:IPR010280,InterPro:IPR012340,InterPro:IPR029063,NCBI_GP:CAL93717.1;Name=CAL93717.1;Note=Putative 23S rRNA (Uracil-5-)-methyltransferase rumA (EC 2.1.1.-) (23S rRNA(M-5-U1939)-methyltransferase). Homology to ruma of E. coli of 39%25 (sprot|RUMA_ECOLI(SRS)) Catalyzes the formation of 5-methyl-uridine at position 1939 (M-5-U1939) in 23S rRNA. Tigrfam: ygcA: RNA methyltransferase%2C TrmA family Pfam: TRAM domain no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=putative 23S rRNA (Uracil-5-) methyltransferase;protein_id=CAL93717.1;transl_table=11
AM406670.1	EMBL	gene	1184957	1185046	.	+	.	ID=gene1125;Name=tRNA-Ser;gbkey=Gene;gene=tRNA-Ser;gene_biotype=tRNA;locus_tag=azo_tRNA_0023
AM406670.1	EMBL	tRNA	1184957	1185046	.	+	.	ID=rna26;Parent=gene1125;anticodon=(pos:1184991..1184993);gbkey=tRNA;gene=tRNA-Ser;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ser
AM406670.1	EMBL	exon	1184957	1185046	.	+	.	ID=id27;Parent=rna26;anticodon=(pos:1184991..1184993);gbkey=tRNA;gene=tRNA-Ser;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ser
AM406670.1	EMBL	gene	1185090	1185695	.	+	.	ID=gene1126;Name=azo1101;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1101
AM406670.1	EMBL	CDS	1185090	1185695	.	+	0	ID=cds1099;Parent=gene1126;Dbxref=EnsemblGenomes-Gn:azo1101,EnsemblGenomes-Tr:CAL93718,GOA:A1K4G3,InterPro:IPR000748,InterPro:IPR006145,InterPro:IPR018496,InterPro:IPR020103,UniProtKB/TrEMBL:A1K4G3,NCBI_GP:CAL93718.1;Name=CAL93718.1;Note=Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-2457 in 23S ribosomal RNA%3B~Family membership;gbkey=CDS;product=pseudouridylate synthase;protein_id=CAL93718.1;transl_table=11
AM406670.1	EMBL	gene	1185730	1186185	.	+	.	ID=gene1127;Name=azo1102;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1102
AM406670.1	EMBL	CDS	1185730	1186185	.	+	0	ID=cds1100;Parent=gene1127;Dbxref=EnsemblGenomes-Gn:azo1102,EnsemblGenomes-Tr:CAL93719,InterPro:IPR003795,UniProtKB/TrEMBL:A1K4G4,NCBI_GP:CAL93719.1;Name=CAL93719.1;Note=Conserved hypothetical secreted protein. Homology to rsc2494 of R. solanacearum of 48%25 (trembl|Q8XWI0(SRS)). Pfam: DUF192 signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93719.1;transl_table=11
AM406670.1	EMBL	gene	1186321	1187466	.	+	.	ID=gene1128;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=azo1103
AM406670.1	EMBL	CDS	1186321	1187466	.	+	0	ID=cds1101;Parent=gene1128;Dbxref=EnsemblGenomes-Gn:azo1103,EnsemblGenomes-Tr:CAL93720,GOA:A1K4G5,InterPro:IPR006135,InterPro:IPR006136,InterPro:IPR029025,UniProtKB/TrEMBL:A1K4G5,NCBI_GP:CAL93720.1;Name=CAL93720.1;Note=Flagellar biosynthetic protein flhB. Required for formation of the rod structure in the basal body of the flagellar apparatus.The FlhB and FlhA together with FliI and FliH%2C may constitute the export apparatus of flagellin. The flhB gene encodes a highly hydrophobic polypeptide with several potential membrane-spanning segments%2C suggesting that it may be an integral membrane protein. InterPro: FlhB HrpN YscU SpaS Family flhB: flagellar biosynthetic protein Pfam: FlhB HrpN YscU SpaS Family 4 TMHs no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=flhB;product=flagellar biosynthetic protein FlhB;protein_id=CAL93720.1;transl_table=11
AM406670.1	EMBL	gene	1187481	1189580	.	+	.	ID=gene1129;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=azo1104
AM406670.1	EMBL	CDS	1187481	1189580	.	+	0	ID=cds1102;Parent=gene1129;Dbxref=EnsemblGenomes-Gn:azo1104,EnsemblGenomes-Tr:CAL93721,GOA:A1K4G6,InterPro:IPR001712,InterPro:IPR006301,InterPro:IPR025505,UniProtKB/TrEMBL:A1K4G6,NCBI_GP:CAL93721.1;Name=CAL93721.1;Note=Flagellar biosynthesis protein flhA. Required for formation of the rod structure of the flagellar apparatus. Together with FlhB%2C FliI and FliH may constitute the export apparatus of flagellin. Pfam: FHIPEP no signal peptide probable 7 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=flhA;product=flagellar biosynthesis protein flhA;protein_id=CAL93721.1;transl_table=11
AM406670.1	EMBL	gene	1189724	1191256	.	+	.	ID=gene1130;Name=flhF;gbkey=Gene;gene=flhF;gene_biotype=protein_coding;locus_tag=azo1105
AM406670.1	EMBL	CDS	1189724	1191256	.	+	0	ID=cds1103;Parent=gene1130;Dbxref=EnsemblGenomes-Gn:azo1105,EnsemblGenomes-Tr:CAL93722,GOA:A1K4G7,InterPro:IPR000897,InterPro:IPR003593,InterPro:IPR020006,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4G7,NCBI_GP:CAL93722.1;Name=CAL93722.1;Note=Putative flagellar biosynthesis protein flhF (Flagella associated GTP-binding protein). Necessary for flagellar priosinthesis. May be involved in translocation of the flagellum (by similarity). Belongs to the family of of subunits of the signal recognition particale in bacteria like FtsY%2C the pilA protein and the flagellar biosynthesis protein flhF. InterPro: AAA ATPase superfamily%2C GTP-binding signal recognition particell (SRP54) G-domain no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=flhF;product=putative flagellar biosynthesis protein FlhF;protein_id=CAL93722.1;transl_table=11
AM406670.1	EMBL	gene	1191259	1192041	.	+	.	ID=gene1131;Name=fleN;gbkey=Gene;gene=fleN;gene_biotype=protein_coding;locus_tag=azo1106
AM406670.1	EMBL	CDS	1191259	1192041	.	+	0	ID=cds1104;Parent=gene1131;Dbxref=EnsemblGenomes-Gn:azo1106,EnsemblGenomes-Tr:CAL93723,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4G8,NCBI_GP:CAL93723.1;Name=CAL93723.1;Note=Hypothetical flagellar related protein FleN. Homology to fleN of Pseudomonas fluorescens of 27%25 (AAN03366). No domains predicted. No signal peptide. No TMHs;gbkey=CDS;gene=fleN;product=hypothetical flagellar related protein FleN;protein_id=CAL93723.1;transl_table=11
AM406670.1	EMBL	gene	1192166	1192936	.	+	.	ID=gene1132;Name=fliA;gbkey=Gene;gene=fliA;gene_biotype=protein_coding;locus_tag=azo1107
AM406670.1	EMBL	CDS	1192166	1192936	.	+	0	ID=cds1105;Parent=gene1132;Dbxref=EnsemblGenomes-Gn:azo1107,EnsemblGenomes-Tr:CAL93724,GOA:A1K4G9,InterPro:IPR000943,InterPro:IPR007624,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR011991,InterPro:IPR012845,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,InterPro:IPR028617,UniProtKB/TrEMBL:A1K4G9,NCBI_GP:CAL93724.1;Name=CAL93724.1;Note=RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28). THE SIGMA FACTOR IS AN INITIATION FACTOR THAT PROMOTES ATTACHMENT OF THE RNA POLYMERASE TO SPECIFIC INITIATION SITES AND THEN IS RELEASED. THIS ALTERNATIVE SIGMA FACTOR IS SPECIFIC FOR CLASS 3 FLAGELLAR OPERONS. Similar to SWISSPROT: sprot|FLIA_PSEAE (46%25 Pseudomonas aeruginosa%2C RNA polymerase sigma factor for flagellar operon (sigma-f factor) (sigma-28)). InterPro: IPR000943 Sigma_70. Pfam: PF00140 Sigma-70 factor%2C region 1.2. HTH reporting nucleic acid binding motif. gatB_rel: aspartyl-tRNA(Asn) amidotrans%3B~High confidence in function and specificity;gbkey=CDS;gene=fliA;product=RNA polymerase sigma factor;protein_id=CAL93724.1;transl_table=11
AM406670.1	EMBL	gene	1193004	1193744	.	+	.	ID=gene1133;Name=azo1108;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1108
AM406670.1	EMBL	CDS	1193004	1193744	.	+	0	ID=cds1106;Parent=gene1133;Dbxref=EnsemblGenomes-Gn:azo1108,EnsemblGenomes-Tr:CAL93725,GOA:A1K4H0,InterPro:IPR002898,UniProtKB/TrEMBL:A1K4H0,NCBI_GP:CAL93725.1;Name=CAL93725.1;Note=Flagellar motor protein MotA (Chemotaxis motA protein). Required for rotation of the flagellar motor. Probable transmembrane proton channel (By similarity). Pfam: MotA/TolQ//ExbB proton channel family signal peptide probable 4 TMHs%3B~High confidence in function and specificity;gbkey=CDS;product=flagellar motor protein MotA;protein_id=CAL93725.1;transl_table=11
AM406670.1	EMBL	gene	1193801	1195465	.	-	.	ID=gene1134;Name=tar;gbkey=Gene;gene=tar;gene_biotype=protein_coding;locus_tag=azo1109
AM406670.1	EMBL	CDS	1193801	1195465	.	-	0	ID=cds1107;Parent=gene1134;Dbxref=EnsemblGenomes-Gn:azo1109,EnsemblGenomes-Tr:CAL93726,GOA:A1K4H1,InterPro:IPR003660,InterPro:IPR004089,UniProtKB/TrEMBL:A1K4H1,NCBI_GP:CAL93726.1;Name=CAL93726.1;Note=E. coli uses five MCP-family receptors to promote chemotactic movements toward different attractant compounds: Tar is the aspartate and maltose chemoreceptor. Methyl-accepting chemotaxis protein%2C%3B~Specificity unclear;gbkey=CDS;gene=tar;product=putative aspartate chemoreceptor protein;protein_id=CAL93726.1;transl_table=11
AM406670.1	EMBL	gene	1195645	1196484	.	+	.	ID=gene1135;Name=motB1;gbkey=Gene;gene=motB1;gene_biotype=protein_coding;locus_tag=azo1110
AM406670.1	EMBL	CDS	1195645	1196484	.	+	0	ID=cds1108;Parent=gene1135;Dbxref=EnsemblGenomes-Gn:azo1110,EnsemblGenomes-Tr:CAL93727,InterPro:IPR006665,InterPro:IPR025713,UniProtKB/TrEMBL:A1K4H2,NCBI_GP:CAL93727.1;Name=CAL93727.1;Note=Flagellar motor protein MotB (Chemotaxis motB protein. Required for the rotation of the flagellar motor. Might be a linker that fastens the torque-generating machinery to the cell wall. Pfam: OmpA family no signal peptide probable 1 TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=motB1;product=flagellar motor protein MotB;protein_id=CAL93727.1;transl_table=11
AM406670.1	EMBL	gene	1196592	1197074	.	+	.	ID=gene1136;Name=dcrH2;gbkey=Gene;gene=dcrH2;gene_biotype=protein_coding;locus_tag=azo1111
AM406670.1	EMBL	CDS	1196592	1197074	.	+	0	ID=cds1109;Parent=gene1136;Dbxref=EnsemblGenomes-Gn:azo1111,EnsemblGenomes-Tr:CAL93728,GOA:A1K4H3,InterPro:IPR012312,InterPro:IPR012827,InterPro:IPR016131,UniProtKB/TrEMBL:A1K4H3,NCBI_GP:CAL93728.1;Name=CAL93728.1;Note=DcrH:hemerythrin protein%2C is transmembrane methyl-accepting protein probably involved in bacterial chemotaxis . 31%25 Hemerythrin. Pfam:PF01814%3B Hemerythrin%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=dcrH2;product=putative hemerythrin-like protein;protein_id=CAL93728.1;transl_table=11
AM406670.1	EMBL	gene	1197195	1199600	.	-	.	ID=gene1137;Name=azo1112;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1112
AM406670.1	EMBL	CDS	1197195	1199600	.	-	0	ID=cds1110;Parent=gene1137;Dbxref=EnsemblGenomes-Gn:azo1112,EnsemblGenomes-Tr:CAL93729,GOA:A1K4H4,InterPro:IPR002205,InterPro:IPR005742,InterPro:IPR006691,InterPro:IPR013758,InterPro:IPR013760,InterPro:IPR024946,UniProtKB/TrEMBL:A1K4H4,NCBI_GP:CAL93729.1;Name=CAL93729.1;Note=Region start changed from 1199745 to 1199601 (-144 bases);gbkey=CDS;product=DNA topoisomerase IV subunit A;protein_id=CAL93729.1;transl_table=11
AM406670.1	EMBL	gene	1199800	1200315	.	-	.	ID=gene1138;Name=azo1113;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1113
AM406670.1	EMBL	CDS	1199800	1200315	.	-	0	ID=cds1111;Parent=gene1138;Dbxref=EnsemblGenomes-Gn:azo1113,EnsemblGenomes-Tr:CAL93730,InterPro:IPR011990,UniProtKB/TrEMBL:A1K4H5,NCBI_GP:CAL93730.1;Name=CAL93730.1;Note=Conserved hypothetical protein. Homology to Bucepa03000705 of Burkholderia cepacia of 33%25 (gi|46323973|ref|ZP_00224335.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93730.1;transl_table=11
AM406670.1	EMBL	gene	1200393	1201181	.	-	.	ID=gene1139;Name=lhpp;gbkey=Gene;gene=lhpp;gene_biotype=protein_coding;locus_tag=azo1114
AM406670.1	EMBL	CDS	1200393	1201181	.	-	0	ID=cds1112;Parent=gene1139;Dbxref=EnsemblGenomes-Gn:azo1114,EnsemblGenomes-Tr:CAL93731,GOA:A1K4H6,InterPro:IPR002645,InterPro:IPR006355,InterPro:IPR006357,InterPro:IPR006439,InterPro:IPR023214,InterPro:IPR023215,UniProtKB/TrEMBL:A1K4H6,NCBI_GP:CAL93731.1;Name=CAL93731.1;Note=Phospholysine phosphohistidine inorganic pyrophosphate phosphatase. Enzyme that hydrolyzes not only oxygen-phosphorus bonds in inorganic pyrophosphate but also nitrogen-phosphorus bonds in phospholysine%2Cphosphohistidine and imidodiphosphate in vitro. 38%25 HAD_SF_IIA.IPR006355%3B HAD_SF_IIA_hyp2.IPR005834%3B Hydrolase. Pfam:PF00702%3BHydrolase%3B 1. TIGRFAMs:TIGR01460%3B HAD-SF-IIA%3B 1.TIGR01458%3B HAD-SF-IIA-hyp3%3B 1. TMHelix:1%3B~High confidence in function and specificity;gbkey=CDS;gene=lhpp;product=putative inorganic pyrophosphate phosphatase;protein_id=CAL93731.1;transl_table=11
AM406670.1	EMBL	gene	1201275	1203248	.	-	.	ID=gene1140;Name=parE;gbkey=Gene;gene=parE;gene_biotype=protein_coding;locus_tag=azo1115
AM406670.1	EMBL	CDS	1201275	1203248	.	-	0	ID=cds1113;Parent=gene1140;Dbxref=EnsemblGenomes-Gn:azo1115,EnsemblGenomes-Tr:CAL93732,GOA:A1K4H7,InterPro:IPR001241,InterPro:IPR002288,InterPro:IPR003594,InterPro:IPR005737,InterPro:IPR006171,InterPro:IPR013506,InterPro:IPR013759,InterPro:IPR013760,InterPro:IPR014721,InterPro:IPR018522,InterPro:IPR020568,UniProtKB/TrEMBL:A1K4H7,NCBI_GP:CAL93732.1;Name=CAL93732.1;Note=Topoisomerase IV subunit B (EC 5.99.1.-). TOPOISOMERASE IV IS ESSENTIAL FOR CHROMOSOME SEGREGATION. IT HAS RELAXATION OF SUPERCOILED DNA ACTIVITY. PERFORMS THE DECATENATION EVENTS REQUIRED DURING THE REPLICATION OF A CIRCULAR DNA MOLECULE. InterPro: DNA topoisomerase II%3B~High confidence in function and specificity;gbkey=CDS;gene=parE;product=topoisomerase IV subunit B;protein_id=CAL93732.1;transl_table=11
AM406670.1	EMBL	gene	1203341	1203955	.	-	.	ID=gene1141;Name=azo1116;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1116
AM406670.1	EMBL	CDS	1203341	1203955	.	-	0	ID=cds1114;Parent=gene1141;Dbxref=EnsemblGenomes-Gn:azo1116,EnsemblGenomes-Tr:CAL93733,InterPro:IPR005115,UniProtKB/TrEMBL:A1K4H8,NCBI_GP:CAL93733.1;Name=CAL93733.1;Note=Conserved hypothetical membrane protein%2CTrEMBL%3BQ8NSJ9(49%25 identity%2C73%25 similarity)%2CTrEMBL%3BQ7VSN7(53%25 identity%2C 72%25 similarity). Has 2 PF03458(IPR005115 ):UPF0126 domain%3BDomain always found as pair in bacterial membrane proteins of unknown function. This domain contains three transmembrane helices. The conserved glycines are suggestive of an ion channel (C. Yeats unpublished obs.). signal peptide 6 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93733.1;transl_table=11
AM406670.1	EMBL	gene	1204519	1205832	.	-	.	ID=gene1142;Name=aceA;gbkey=Gene;gene=aceA;gene_biotype=protein_coding;locus_tag=azo1117
AM406670.1	EMBL	CDS	1204519	1205832	.	-	0	ID=cds1115;Parent=gene1142;Dbxref=EnsemblGenomes-Gn:azo1117,EnsemblGenomes-Tr:CAL93734,GOA:A1K4H9,InterPro:IPR006254,InterPro:IPR015813,InterPro:IPR018523,UniProtKB/TrEMBL:A1K4H9,NCBI_GP:CAL93734.1;Name=CAL93734.1;Note=Isocitrate lyase. Homology to aceA of E. coli of 73%25 (sprot|ACEA_ECOLI). Isocitrate lyase is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass%2C an alternative to the tricarboxylic acid cycle in bacteria%2C fungi and plants. InterPro: Isocitrate lyase (IPR000918) Pfam: Isocitrate lyase family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=aceA;product=AceA protein;protein_id=CAL93734.1;transl_table=11
AM406670.1	EMBL	gene	1206325	1207365	.	+	.	ID=gene1143;Name=azo1118;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1118
AM406670.1	EMBL	CDS	1206325	1207365	.	+	0	ID=cds1116;Parent=gene1143;Dbxref=EnsemblGenomes-Gn:azo1118,EnsemblGenomes-Tr:CAL93735,GOA:A1K4I0,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,UniProtKB/TrEMBL:A1K4I0,NCBI_GP:CAL93735.1;Name=CAL93735.1;Note=Putative AraC-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative AraC-family transcriptional regulator;protein_id=CAL93735.1;transl_table=11
AM406670.1	EMBL	gene	1207554	1209134	.	+	.	ID=gene1144;Name=crtI;gbkey=Gene;gene=crtI;gene_biotype=protein_coding;locus_tag=azo1119
AM406670.1	EMBL	CDS	1207554	1209134	.	+	0	ID=cds1117;Parent=gene1144;Dbxref=EnsemblGenomes-Gn:azo1119,EnsemblGenomes-Tr:CAL93736,GOA:A1K4I1,InterPro:IPR006076,UniProtKB/TrEMBL:A1K4I1,NCBI_GP:CAL93736.1;Name=CAL93736.1;Note=Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene desaturase). Phytoene dehydrogenase (phytoene desaturase) is an enzyme of carotenoid biosynthesis that converts phytoene into zeta-carotene via the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene%2C TREMBL:Q8XYC4 (50%25 identity)%3B SWISSPROT:P06108 (26%25 identity). InterPro (IPR008150): Bacterial-type phytoene dehydrogenase Pfam (Phytoene_dh): Phytoene dehydrogenase related enzyme.%3B~High confidence in function and specificity;gbkey=CDS;gene=crtI;product=phytoene dehydrogenase;protein_id=CAL93736.1;transl_table=11
AM406670.1	EMBL	gene	1209318	1210130	.	-	.	ID=gene1145;Name=azo1120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1120
AM406670.1	EMBL	CDS	1209318	1210130	.	-	0	ID=cds1118;Parent=gene1145;Dbxref=EnsemblGenomes-Gn:azo1120,EnsemblGenomes-Tr:CAL93737,GOA:A1K4I2,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K4I2,NCBI_GP:CAL93737.1;Name=CAL93737.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8XYC0 (36%25 identity)%3B TREMBL:Q9EX74 (34%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL93737.1;transl_table=11
AM406670.1	EMBL	gene	1210127	1210732	.	-	.	ID=gene1146;Name=azo1121;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1121
AM406670.1	EMBL	CDS	1210127	1210732	.	-	0	ID=cds1119;Parent=gene1146;Dbxref=EnsemblGenomes-Gn:azo1121,EnsemblGenomes-Tr:CAL93738,GOA:A1K4I3,InterPro:IPR000868,UniProtKB/TrEMBL:A1K4I3,NCBI_GP:CAL93738.1;Name=CAL93738.1;Note=This is a family of hydrolase enzymes. Isochorismatase%2C also known as 2%2C3 dihydro-2%2C3 dihydroxybenzoatesynthase catalyses the conversion of isochorismate%2C in the presence of water%2C to 2%2C3-dihydroxybenzoate and pyruvate%2C TREMBL:Q9HZE2 (34%25 identity)%3B TREMBL:Q8XSM9 (39%25 identity). Pfam (PF00857): Isochorismatase family.%3B~Family membership;gbkey=CDS;product=isochorismatase family protein;protein_id=CAL93738.1;transl_table=11
AM406670.1	EMBL	gene	1210885	1211421	.	-	.	ID=gene1147;Name=carBa1;gbkey=Gene;gene=carBa1;gene_biotype=protein_coding;locus_tag=azo1122
AM406670.1	EMBL	CDS	1210885	1211421	.	-	0	ID=cds1120;Parent=gene1147;Dbxref=EnsemblGenomes-Gn:azo1122,EnsemblGenomes-Tr:CAL93739,GOA:A1K4I4,InterPro:IPR000391,UniProtKB/TrEMBL:A1K4I4,NCBI_GP:CAL93739.1;Name=CAL93739.1;Note=Ring hydroxylating dioxygenases are multicomponent 1%2C2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols. The beta subunit is may be responsible for the substrate specificity of the enzyme. Putative 2'-aminobiphenyl-2%2C3-diol 1%2C2-dioxygenase%2C CarBa. Involved in the aerobic degradation of carbazole by P.resinovorans sp. strain CA10. XlyY: Benzene 12-dioxygenase beta subunit (EC 1.14.12.3)%2C involved in benzoate degradation.Degradation of benzoate to 2-hydro-12-dihydroxybenzoate (dhb).%3B~Conserved hypothetical protein;gbkey=CDS;gene=carBa1;product=putative dioxygenase%2C hydroxylase small component.;protein_id=CAL93739.1;transl_table=11
AM406670.1	EMBL	gene	1211408	1212763	.	-	.	ID=gene1148;Name=carBb1;gbkey=Gene;gene=carBb1;gene_biotype=protein_coding;locus_tag=azo1123
AM406670.1	EMBL	CDS	1211408	1212763	.	-	0	ID=cds1121;Parent=gene1148;Dbxref=EnsemblGenomes-Gn:azo1123,EnsemblGenomes-Tr:CAL93740,GOA:A1K4I5,InterPro:IPR001663,InterPro:IPR015879,InterPro:IPR017941,UniProtKB/TrEMBL:A1K4I5,NCBI_GP:CAL93740.1;Name=CAL93740.1;Note=Ring hydroxylating dioxygenases are multicomponent 1%2C2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols. Hydroxylase large component of 1%2C2-dioxygenase protein complex%2C involved in aromatic compounds degradation. 81%25 simialr to a Putative 2'-aminobiphenyl-2%2C3-diol 1%2C2-dioxygenase%2C CarBb. Involved in the aerobic degradation of carbazole by Pseudomonas resinovorans sp. strain CA10. TREMBL:Q8GI28 InterPro:IPR005806%3B Rieske_reg.IPR001663%3B Ring_hydroxyl_A. Pfam:PF00355%3B Rieske%3B 1. PF00848%3B Ring_hydroxyl_A%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=carBb1;product=putative dioxygenase hydroxylase large component;protein_id=CAL93740.1;transl_table=11
AM406670.1	EMBL	gene	1212783	1213730	.	-	.	ID=gene1149;Name=vanB1;gbkey=Gene;gene=vanB1;gene_biotype=protein_coding;locus_tag=azo1124
AM406670.1	EMBL	CDS	1212783	1213730	.	-	0	ID=cds1122;Parent=gene1149;Dbxref=EnsemblGenomes-Gn:azo1124,EnsemblGenomes-Tr:CAL93741,GOA:A1K4I6,InterPro:IPR000951,InterPro:IPR001041,InterPro:IPR001433,InterPro:IPR006058,InterPro:IPR008333,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K4I6,NCBI_GP:CAL93741.1;Name=CAL93741.1;Note=Probable vanillate O-demethylase oxidoreductase (Vanillate degradation ferredoxin-like protein). Homology to vanB of P. sp HR199 of 40%25 (sprot|VANB_PSEUH). The vanillate demethylase (EC:1.14.13.82) consists of two proteins: an oxygenase and an oxygenase reductase (VanA and VanB). This enzyme is involved in the vanillate degradation%2C a key intermediate in the degradation of lignin. InterPro: NADH:cytochrome b5 reductase (CBR)(IPR001834)%3B Ferredoxin (IPR001041)%3B Oxidoreductase FAD and NAD(P) binding domain (IPR001433) Pfam: Oxidoredutase FAD-binding domain%3B Oxidoreductase NAD-binding domain%3B 2Fe-2S iron-sulfur cluster binding domain no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=vanB1;product=probable vanillate O-demethylase oxidoreductase;protein_id=CAL93741.1;transl_table=11
AM406670.1	EMBL	gene	1214284	1215204	.	+	.	ID=gene1150;Name=azo1125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1125
AM406670.1	EMBL	CDS	1214284	1215204	.	+	0	ID=cds1123;Parent=gene1150;Dbxref=EnsemblGenomes-Gn:azo1125,EnsemblGenomes-Tr:CAL93742,GOA:A1K4I7,InterPro:IPR001851,UniProtKB/TrEMBL:A1K4I7,NCBI_GP:CAL93742.1;Name=CAL93742.1;Note=Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q7W060 (64%25) and to sprot|LIVH_ECOLI (24%25). Pfam (PF02653): Branched-chain amino acid transport system / permease component TMHMM reporting eight Tmhelix.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease protein;protein_id=CAL93742.1;transl_table=11
AM406670.1	EMBL	gene	1215207	1216199	.	+	.	ID=gene1151;Name=livM2;gbkey=Gene;gene=livM2;gene_biotype=protein_coding;locus_tag=azo1126
AM406670.1	EMBL	CDS	1215207	1216199	.	+	0	ID=cds1124;Parent=gene1151;Dbxref=EnsemblGenomes-Gn:azo1126,EnsemblGenomes-Tr:CAL93743,GOA:A1K4I8,InterPro:IPR001851,UniProtKB/TrEMBL:A1K4I8,NCBI_GP:CAL93743.1;Name=CAL93743.1;Note=Putative branched-chain amino acid transport permease Homology to livM of S. typhimurium of 28%25. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. InterPro: Binding-system dependent bacterial transporters (araH livH/limM families) Pfam: Branched-chain amino acid transport system signal peptide probable 9 TMHs%3B~Specificity unclear;gbkey=CDS;gene=livM2;product=putative branched-chain amino acid transport permease;protein_id=CAL93743.1;transl_table=11
AM406670.1	EMBL	gene	1216196	1216945	.	+	.	ID=gene1152;Name=azo1127;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1127
AM406670.1	EMBL	CDS	1216196	1216945	.	+	0	ID=cds1125;Parent=gene1152;Dbxref=EnsemblGenomes-Gn:azo1127,EnsemblGenomes-Tr:CAL93744,GOA:A1K4I9,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4I9,NCBI_GP:CAL93744.1;Name=CAL93744.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP binding domains are responsible for coupling the energy of ATP hydrolysis to conformational changes in the ransmembrane domains. Similar to trembl|Q7W058 (49%25) and to sprot|LIVG_ECOLI (39%25). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily%3B~Specificity unclear;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL93744.1;transl_table=11
AM406670.1	EMBL	gene	1216942	1217658	.	+	.	ID=gene1153;Name=azo1128;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1128
AM406670.1	EMBL	CDS	1216942	1217658	.	+	0	ID=cds1126;Parent=gene1153;Dbxref=EnsemblGenomes-Gn:azo1128,EnsemblGenomes-Tr:CAL93745,GOA:A1K4J0,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4J0,NCBI_GP:CAL93745.1;Name=CAL93745.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q7W057 (65%25) and to trembl|Q84HI4 (49%25). Smart (SM00382): ATPase superfamily Pfam (PF00005): ABC transporter ProSite (PS50101): ATP/GTP-binding site motif A (P-loop)%3B~Specificity unclear;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL93745.1;transl_table=11
AM406670.1	EMBL	gene	1217770	1218957	.	+	.	ID=gene1154;Name=azo1129;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1129
AM406670.1	EMBL	CDS	1217770	1218957	.	+	0	ID=cds1127;Parent=gene1154;Dbxref=EnsemblGenomes-Gn:azo1129,EnsemblGenomes-Tr:CAL93746,GOA:A1K4J1,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1K4J1,NCBI_GP:CAL93746.1;Name=CAL93746.1;Note=ABC transporter substrate binding proteins counts to the family of extracellular ligand binding proteins. It is a component of the high affinity amino acid transport system. Similar to trembl|Q83V39 (51%25) and to trembl|Q7WF58 (49%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Function unclear;gbkey=CDS;product=probable ABC transporter substrate binding protein;protein_id=CAL93746.1;transl_table=11
AM406670.1	EMBL	gene	1219045	1219530	.	-	.	ID=gene1155;Name=azo1130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1130
AM406670.1	EMBL	CDS	1219045	1219530	.	-	0	ID=cds1128;Parent=gene1155;Dbxref=EnsemblGenomes-Gn:azo1130,EnsemblGenomes-Tr:CAL93747,GOA:A1K4J2,InterPro:IPR005493,InterPro:IPR010203,UniProtKB/TrEMBL:A1K4J2,NCBI_GP:CAL93747.1;Name=CAL93747.1;Note=Region start changed from 1219636 to 1219531 (-105 bases);gbkey=CDS;product=S-adenosylmethionine:2-demethylmenaquinone methyltransferase;protein_id=CAL93747.1;transl_table=11
AM406670.1	EMBL	gene	1219713	1220327	.	-	.	ID=gene1156;Name=azo1131;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1131
AM406670.1	EMBL	CDS	1219713	1220327	.	-	0	ID=cds1129;Parent=gene1156;Dbxref=EnsemblGenomes-Gn:azo1131,EnsemblGenomes-Tr:CAL93748,UniProtKB/TrEMBL:A1K4J3,NCBI_GP:CAL93748.1;Name=CAL93748.1;Note=Conserved hypothetical protein. Homology to Daro03001685 of Dechloromonas aromatica of 46%25 (gi|41725028|ref|ZP_00151838.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93748.1;transl_table=11
AM406670.1	EMBL	gene	1220421	1222703	.	-	.	ID=gene1157;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=azo1132
AM406670.1	EMBL	CDS	1220421	1222703	.	-	0	ID=cds1130;Parent=gene1157;Dbxref=EnsemblGenomes-Gn:azo1132,EnsemblGenomes-Tr:CAL93749,GOA:A1K4J4,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004176,InterPro:IPR013461,InterPro:IPR018368,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,InterPro:IPR028299,UniProtKB/TrEMBL:A1K4J4,NCBI_GP:CAL93749.1;Name=CAL93749.1;Note=ATP-dependent Clp protease ATP-binding subunit clpA. Homology to clpA of E. coli of 63%25 (sprot|CLPA_ECOLI). ATP-dependent specificity component of the clpP protease. It directs the protease to specific substrates. The primary function of the clpA-clpP complex appears to be the degradation of unfolded or abnormal proteins. InterPro: AAA-protein (ATPases associated with various cellular activities)(IPR003959)%3B AAA ATPase superfamily (IPR003593)%3B Clp amino terminus (IPR004176)%3B chaperonins clpA/B (IPR001270)%3B Bacterial typeII secretion system protein E (IPR001482) Pfam: Clp amino ternimal domain%3B ATPase family associated with cellular activites no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=clpA;product=probable ATP-dependent Clp protease%2C ATP-binding subunit clpA;protein_id=CAL93749.1;transl_table=11
AM406670.1	EMBL	gene	1222704	1223012	.	-	.	ID=gene1158;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=azo1133
AM406670.1	EMBL	CDS	1222704	1223012	.	-	0	ID=cds1131;Parent=gene1158;Dbxref=EnsemblGenomes-Gn:azo1133,EnsemblGenomes-Tr:CAL93750,GOA:A1K4J5,InterPro:IPR003769,InterPro:IPR014719,InterPro:IPR022935,NCBI_GP:CAL93750.1;Name=CAL93750.1;Note=ATP-dependent Clp protease adaptor protein clpS [clpS]%2C65%25 identity (82%25 similarity) to SwissProt%3BQ7NRW1%2C64%25 identity to SwissProt%3BQ8XWK9. Has PF02617%3BATP-dependent Clp protease adaptor protein ClpS(IPR003769)%3B In the bacterial cytosol%2C ATP-dependent protein degradation is performed by several different chaperone-protease pairs%2C including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates%2C both SsrA-tagged proteins and ClpA itself%2C is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity%2C potentially redirecting degradation by ClpAP toward aggregated proteins.%3B~High confidence in function and specificity;gbkey=CDS;gene=clpS;product=ClpS protein;protein_id=CAL93750.1;transl_table=11
AM406670.1	EMBL	gene	1223446	1223649	.	+	.	ID=gene1159;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;locus_tag=azo1134
AM406670.1	EMBL	CDS	1223446	1223649	.	+	0	ID=cds1132;Parent=gene1159;Dbxref=EnsemblGenomes-Gn:azo1134,EnsemblGenomes-Tr:CAL93751,GOA:A1K4J6,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012156,InterPro:IPR012340,InterPro:IPR019844,UniProtKB/TrEMBL:A1K4J6,NCBI_GP:CAL93751.1;Name=CAL93751.1;Note=Cold-shock protein cspE%2C (When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade%2C a 4-5 hour lag phase occurs%2C after which growth is resumed at a reduced rate. During the lag phase%2Cthe expression of around 13 proteins%2C which contain specific DNA-binding regions%2C is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature.)%3B~High confidence in function and specificity;gbkey=CDS;gene=cspE;product=cold-shock protein;protein_id=CAL93751.1;transl_table=11
AM406670.1	EMBL	gene	1223918	1224085	.	-	.	ID=gene1160;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=azo1135
AM406670.1	EMBL	CDS	1223918	1224085	.	-	0	ID=cds1133;Parent=gene1160;Dbxref=EnsemblGenomes-Gn:azo1135,EnsemblGenomes-Tr:CAL93752,GOA:A1K4J7,InterPro:IPR001705,InterPro:IPR011332,InterPro:IPR018264,NCBI_GP:CAL93752.1;Name=CAL93752.1;Note=50S ribosomal protein L33.%3B~Family membership;gbkey=CDS;gene=rpmG;product=50S ribosomal subunit protein L33;protein_id=CAL93752.1;transl_table=11
AM406670.1	EMBL	gene	1224147	1224383	.	-	.	ID=gene1161;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=azo1136
AM406670.1	EMBL	CDS	1224147	1224383	.	-	0	ID=cds1134;Parent=gene1161;Dbxref=EnsemblGenomes-Gn:azo1136,EnsemblGenomes-Tr:CAL93753,GOA:A1K4J8,InterPro:IPR001383,InterPro:IPR026569,NCBI_GP:CAL93753.1;Name=CAL93753.1;Note=50S ribosomal protein L28.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpmB;product=50S ribosomal protein L28;protein_id=CAL93753.1;transl_table=11
AM406670.1	EMBL	gene	1224488	1225165	.	-	.	ID=gene1162;Name=radC1;gbkey=Gene;gene=radC1;gene_biotype=protein_coding;locus_tag=azo1137
AM406670.1	EMBL	CDS	1224488	1225165	.	-	0	ID=cds1135;Parent=gene1162;Dbxref=EnsemblGenomes-Gn:azo1137,EnsemblGenomes-Tr:CAL93754,InterPro:IPR001405,InterPro:IPR010994,InterPro:IPR020891,InterPro:IPR025657,NCBI_GP:CAL93754.1;Name=CAL93754.1;Note=DNA repair protein radC homolog%2C 64%25 Idnentity to SwisProt%3BQ82UL9%2C(58%25) to Q8XWN0. TrEMBL%3BQ7NTH5(60%25 Identity) Signal Peptide Present Has PF04002%2C RadC%2C DNA repair protein%3BIPR001405: RadC plays a role in repair of DNA damage after UV and X-ray irradiation in prokaryotes. The E. coli radC gene encodes a RecG-like DNA recombination/repair function. RadC may function specifically in recombinational repair that is associated with the replication fork.;gbkey=CDS;gene=radC1;product=DNA repair protein radC homolog;protein_id=CAL93754.1;transl_table=11
AM406670.1	EMBL	gene	1225220	1226419	.	+	.	ID=gene1163;Name=dfp;gbkey=Gene;gene=dfp;gene_biotype=protein_coding;locus_tag=azo1138
AM406670.1	EMBL	CDS	1225220	1226419	.	+	0	ID=cds1136;Parent=gene1163;Dbxref=EnsemblGenomes-Gn:azo1138,EnsemblGenomes-Tr:CAL93755,GOA:A1K4K0,InterPro:IPR003382,InterPro:IPR005252,InterPro:IPR007085,UniProtKB/TrEMBL:A1K4K0,NCBI_GP:CAL93755.1;Name=CAL93755.1;Note=DNA/pantothenate metabolism flavoprotein homolog. includes: phosphopantothenoylcysteine decarboxylase (ppcdc) (coac)%3B phosphopantothenate-- cysteine ligase FLAVOPROTEIN AFFECTING SYNTHESIS OF DNA AND PANTOTHENATE METABOLISM (BY SIMILARITY).%3B~High confidence in function and specificity;gbkey=CDS;gene=dfp;product=phosphopantothenoylcysteine decarboxylase / Phosphopantothenate--cysteine ligase;protein_id=CAL93755.1;transl_table=11
AM406670.1	EMBL	gene	1226436	1226885	.	+	.	ID=gene1164;Name=dut;gbkey=Gene;gene=dut;gene_biotype=protein_coding;locus_tag=azo1139
AM406670.1	EMBL	CDS	1226436	1226885	.	+	0	ID=cds1137;Parent=gene1164;Dbxref=EnsemblGenomes-Gn:azo1139,EnsemblGenomes-Tr:CAL93756,GOA:A1K4K1,InterPro:IPR008180,InterPro:IPR008181,InterPro:IPR029054,NCBI_GP:CAL93756.1;Name=CAL93756.1;Note=dUTP diphosphatase (Deoxyuridine-triphosphatase) (dUTPase)%3B~High confidence in function and specificity;gbkey=CDS;gene=dut;product=dUTP diphosphatase;protein_id=CAL93756.1;transl_table=11
AM406670.1	EMBL	gene	1226887	1227312	.	+	.	ID=gene1165;Name=azo1140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1140
AM406670.1	EMBL	CDS	1226887	1227312	.	+	0	ID=cds1138;Parent=gene1165;Dbxref=EnsemblGenomes-Gn:azo1140,EnsemblGenomes-Tr:CAL93757,GOA:A1K4K2,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR020476,UniProtKB/TrEMBL:A1K4K2,NCBI_GP:CAL93757.1;Name=CAL93757.1;Note=Conserved hypothetical MutT family protein. Homology to AGR_C_3368 of Agrobacterium tumefaciens of 33%25 (tremble:Q7CYF2). Pfam: NUDIX domain MutT is a small bacterial protein (~~12-15Kd) involved in the GO system MEDLINE:1328155 responsible for removing an oxidatively damaged form of guanine (8-hydroxy- guanine or 7%2C8-dihydro-8-oxoguanine) from DNA and the nucleotide pool. 8-oxo-dGTP is inserted opposite dA and dC residues of template DNA with near equal efficiency%2C leading to A.T to G.C transversions. MutT specifically degrades 8-oxo-dGTP to the monophosphate%2C with the concomitant release of pyrophosphate. A short conserved N-terminal region of mutT (designated the MutT domain) is also found in a variety of other prokaryotic%2C viral and eukaryotic proteins. No signal peptide. No TMH%3B~Family membership;gbkey=CDS;product=conserved hypothetical mutT family protein;protein_id=CAL93757.1;transl_table=11
AM406670.1	EMBL	gene	1227315	1228592	.	-	.	ID=gene1166;Name=soxF;gbkey=Gene;gene=soxF;gene_biotype=protein_coding;locus_tag=azo1141
AM406670.1	EMBL	CDS	1227315	1228592	.	-	0	ID=cds1139;Parent=gene1166;Dbxref=EnsemblGenomes-Gn:azo1141,EnsemblGenomes-Tr:CAL93758,GOA:A1K4K3,InterPro:IPR006311,InterPro:IPR015323,InterPro:IPR016156,InterPro:IPR023753,UniProtKB/TrEMBL:A1K4K3,NCBI_GP:CAL93758.1;Name=CAL93758.1;Note=Probable sulfide dehydrogenase%2C falvoprotein subunit (Flavocytochrome C flavoprotein subunit). Homology to fccB of C. vinosum of 40%25 (sprot|DHSU_CHRVI). Pfam: Pyridine nucleotide-disulphide oxidoreductase signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=soxF;product=probable sulfide dehydrogenase%2C flavoprtein subunit;protein_id=CAL93758.1;transl_table=11
AM406670.1	EMBL	gene	1228607	1228906	.	-	.	ID=gene1167;Name=soxE;gbkey=Gene;gene=soxE;gene_biotype=protein_coding;locus_tag=azo1142
AM406670.1	EMBL	CDS	1228607	1228906	.	-	0	ID=cds1140;Parent=gene1167;Dbxref=EnsemblGenomes-Gn:azo1142,EnsemblGenomes-Tr:CAL93759,GOA:A1K4K4,InterPro:IPR003088,InterPro:IPR009056,UniProtKB/TrEMBL:A1K4K4,NCBI_GP:CAL93759.1;Name=CAL93759.1;Note=Putative sulfide dehydrogenase%2C cytochrome subunit. Homology to fccA of C. limicola of 26%25 (sprot|CYSD_CHLLT(SRS)) InterPro: Cytochrome c class I (IPR003088)%3B cytochrome c class IC (IPR008168) Pfam: Cytochrome C signal peptide no TMHs;gbkey=CDS;gene=soxE;product=putative sulfide dehydrogenase%2C cytochrome subunit;protein_id=CAL93759.1;transl_table=11
AM406670.1	EMBL	gene	1229108	1229551	.	+	.	ID=gene1168;Name=soxY;gbkey=Gene;gene=soxY;gene_biotype=protein_coding;locus_tag=azo1143
AM406670.1	EMBL	CDS	1229108	1229551	.	+	0	ID=cds1141;Parent=gene1168;Dbxref=EnsemblGenomes-Gn:azo1143,EnsemblGenomes-Tr:CAL93760,InterPro:IPR016568,UniProtKB/TrEMBL:A1K4K5,NCBI_GP:CAL93760.1;Name=CAL93760.1;gbkey=CDS;gene=soxY;product=sulfur covalently-binding protein;protein_id=CAL93760.1;transl_table=11
AM406670.1	EMBL	gene	1229562	1229873	.	+	.	ID=gene1169;Name=soxZ;gbkey=Gene;gene=soxZ;gene_biotype=protein_coding;locus_tag=azo1144
AM406670.1	EMBL	CDS	1229562	1229873	.	+	0	ID=cds1142;Parent=gene1169;Dbxref=EnsemblGenomes-Gn:azo1144,EnsemblGenomes-Tr:CAL93761,GOA:A1K4K6,InterPro:IPR013783,InterPro:IPR014756,InterPro:IPR014880,UniProtKB/TrEMBL:A1K4K6,NCBI_GP:CAL93761.1;Name=CAL93761.1;Note=Gene Function%3B~High confidence in function and specificity;gbkey=CDS;gene=soxZ;product=phosphodiesterase I;protein_id=CAL93761.1;transl_table=11
AM406670.1	EMBL	gene	1229883	1231652	.	-	.	ID=gene1170;Name=aceK;gbkey=Gene;gene=aceK;gene_biotype=protein_coding;locus_tag=azo1145
AM406670.1	EMBL	CDS	1229883	1231652	.	-	0	ID=cds1143;Parent=gene1170;Dbxref=EnsemblGenomes-Gn:azo1145,EnsemblGenomes-Tr:CAL93762,GOA:A1K4K7,InterPro:IPR010452,NCBI_GP:CAL93762.1;Name=CAL93762.1;Note=Isocitrate dehydrogenase kinase/phosphatase%2C WHEN BACTERIA ARE GROWN ON GLUCOSE IDH IS FULLY ACTIVE AND UNPHOSPHORYLATED BUT WHEN GROWN ON ACETATE THE ACTIVITY OF IDH DECLINES DRASTICALLY CONCOMITANT WITH ITS PHOSPHORYLATION AT MULTIPLE SITES (BY SIMILARITY).%3B~High confidence in function and specificity;gbkey=CDS;gene=aceK;product=[Isocitrate dehydrogenase (NADP+)] kinase;protein_id=CAL93762.1;transl_table=11
AM406670.1	EMBL	gene	1232133	1234370	.	+	.	ID=gene1171;Name=icd2;gbkey=Gene;gene=icd2;gene_biotype=protein_coding;locus_tag=azo1146
AM406670.1	EMBL	CDS	1232133	1234370	.	+	0	ID=cds1144;Parent=gene1171;Dbxref=EnsemblGenomes-Gn:azo1146,EnsemblGenomes-Tr:CAL93763,GOA:A1K4K8,InterPro:IPR004436,InterPro:IPR024084,UniProtKB/TrEMBL:A1K4K8,NCBI_GP:CAL93763.1;Name=CAL93763.1;Note=Isocitrate dehydrogenase [NADP]. Homology to icd2 of A. eutrophus of 80%25 (trembl|Q8KLU4) This monomeric type of isocitrate dehydrogenase is NADP-specific. It is an important enzyme of the TCA. Interpro: Isocitrate dehydrogenase NADP-dependent%2C monomeric type (IPR004436) Tigrfam: monomer-idh: isocitrate dehydrogenase NADP-dependent no singal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=icd2;product=isocitrate dehydrogenase[NADP];protein_id=CAL93763.1;transl_table=11
AM406670.1	EMBL	gene	1234547	1235824	.	+	.	ID=gene1172;Name=icd1;gbkey=Gene;gene=icd1;gene_biotype=protein_coding;locus_tag=azo1147
AM406670.1	EMBL	CDS	1234547	1235824	.	+	0	ID=cds1145;Parent=gene1172;Dbxref=EnsemblGenomes-Gn:azo1147,EnsemblGenomes-Tr:CAL93764,GOA:A1K4K9,InterPro:IPR001804,InterPro:IPR004439,InterPro:IPR019818,InterPro:IPR024084,UniProtKB/TrEMBL:A1K4K9,NCBI_GP:CAL93764.1;Name=CAL93764.1;Note=Isocitrate dehydrogenase [NADP]. Homology to icd1 of A. eutropus of 75%25 (trembl|Q8KLU5) Isocitrate dehydrogenase is an important enzyme of the TCA which catalyzes the reaction: isocitrate + NAD+ %3D 2-oxoglutarate + CO2 + NADH + H+ Pfam: Isocitrate/isopropylmalate dehydrogenase Tigrfam: prok_nadp_idh: isocitrate dehydrogenase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=icd1;product=isocitrate dehydrogenase [NADP];protein_id=CAL93764.1;transl_table=11
AM406670.1	EMBL	gene	1236048	1236302	.	+	.	ID=gene1173;Name=azo1148;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1148
AM406670.1	EMBL	CDS	1236048	1236302	.	+	0	ID=cds1146;Parent=gene1173;Dbxref=EnsemblGenomes-Gn:azo1148,EnsemblGenomes-Tr:CAL93765,InterPro:IPR019886,UniProtKB/TrEMBL:A1K4L0,NCBI_GP:CAL93765.1;Name=CAL93765.1;Note=Conserved hypothetical membrane protein. Homology to ws0602 of W. succinogenes of 63%25 (trembl|Q7MSB5(SRS)) no domains predicted no singal peptide 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93765.1;transl_table=11
AM406670.1	EMBL	gene	1236315	1238120	.	+	.	ID=gene1174;Name=azo1149;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1149
AM406670.1	EMBL	CDS	1236315	1238120	.	+	0	ID=cds1147;Parent=gene1174;Dbxref=EnsemblGenomes-Gn:azo1149,EnsemblGenomes-Tr:CAL93766,GOA:A1K4L1,InterPro:IPR001734,InterPro:IPR019899,UniProtKB/TrEMBL:A1K4L1,NCBI_GP:CAL93766.1;Name=CAL93766.1;Note=Conserved hypothetical sodium:solute symporter. Homology to to ws0601 of W. succinogenes of 68%25 (trembl|Q7M9X9). Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force%2C SMF) is used to drive solute accumulation against a concentration gradient. The solutes transported may be sugars%2C amino acids%2C nucleosides%2C inositols%2C vitamins%2Curea or anions%2C depending on the system. InterPro: Sodium:solute symporter family (IPR001734) Tigrfam: sss: SSS sodium solute transporter superfamily no signal peptide 12 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical sodium:solute symporter;protein_id=CAL93766.1;transl_table=11
AM406670.1	EMBL	gene	1238249	1238617	.	+	.	ID=gene1175;Name=azo1150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1150
AM406670.1	EMBL	CDS	1238249	1238617	.	+	0	ID=cds1148;Parent=gene1175;Dbxref=EnsemblGenomes-Gn:azo1150,EnsemblGenomes-Tr:CAL93767,UniProtKB/TrEMBL:A1K4L2,NCBI_GP:CAL93767.1;Name=CAL93767.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. No singal peptide 3 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93767.1;transl_table=11
AM406670.1	EMBL	gene	1238632	1238925	.	-	.	ID=gene1176;Name=azo1151;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1151
AM406670.1	EMBL	CDS	1238632	1238925	.	-	0	ID=cds1149;Parent=gene1176;Dbxref=EnsemblGenomes-Gn:azo1151,EnsemblGenomes-Tr:CAL93768,InterPro:IPR019886,UniProtKB/TrEMBL:A1K4L3,NCBI_GP:CAL93768.1;Name=CAL93768.1;Note=Conserved hypothetical membrane protein. Homology to vv11244 of V. vulnificus of 42%25 (trembl|Q8DCZ3(SRS)) no domains predicted no signal peptide 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93768.1;transl_table=11
AM406670.1	EMBL	gene	1238922	1240967	.	-	.	ID=gene1177;Name=fusA1;gbkey=Gene;gene=fusA1;gene_biotype=protein_coding;locus_tag=azo1152
AM406670.1	EMBL	CDS	1238922	1240967	.	-	0	ID=cds1150;Parent=gene1177;Dbxref=EnsemblGenomes-Gn:azo1152,EnsemblGenomes-Tr:CAL93769,GOA:A1K4L4,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005517,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4L4,NCBI_GP:CAL93769.1;Name=CAL93769.1;Note=Putative elongation factor EF-G. Homology to FusA of E. coli of 29%25 (sprot|EFG_ECOLI(SRS)) This protein promotes the GTP-dependent translocation of the nascent protein chain from the A-site to the P-site of the ribosome. Interpro: Elongation factor G%2C C-terminus (IPR000640)%3B Elongation factor Tu domain 2 (IPR004161)%3B GTP-binding elongation factor (IPR000795)%3B ATP/GTP-binding site motifA (P-loop) (IPR001687) Tigrfam: EF-G: translation elongation factor G Pfam: Elongation factor Tu domain 2%3B Elongation factor Tu GTP binding domain%3B Elongation factor G C-terminus no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=fusA1;product=putative elongation factor EF-G;protein_id=CAL93769.1;transl_table=11
AM406670.1	EMBL	gene	1241063	1242703	.	-	.	ID=gene1178;Name=azo1153;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1153
AM406670.1	EMBL	CDS	1241063	1242703	.	-	0	ID=cds1151;Parent=gene1178;Dbxref=EnsemblGenomes-Gn:azo1153,EnsemblGenomes-Tr:CAL93770,InterPro:IPR004324,UniProtKB/TrEMBL:A1K4L5,NCBI_GP:CAL93770.1;Name=CAL93770.1;Note=Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 61%25%3B~Function unclear;gbkey=CDS;product=putative permeases of the major facilitator superfamily;protein_id=CAL93770.1;transl_table=11
AM406670.1	EMBL	gene	1243088	1243822	.	-	.	ID=gene1179;Name=azo1154;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1154
AM406670.1	EMBL	CDS	1243088	1243822	.	-	0	ID=cds1152;Parent=gene1179;Dbxref=EnsemblGenomes-Gn:azo1154,EnsemblGenomes-Tr:CAL93771,InterPro:IPR007300,UniProtKB/TrEMBL:A1K4L6,NCBI_GP:CAL93771.1;Name=CAL93771.1;Note=Conserved hypothetical membrane protein. Homology to rsc2670 of R. solanacearum of 64%25 (tremble: Q8XWO5) Pfam: LrgB-like family The two products of the lrgAB operon are potential membrane proteins%2C and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance. no signal peptide 6 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93771.1;transl_table=11
AM406670.1	EMBL	gene	1243819	1244181	.	-	.	ID=gene1180;Name=azo1155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1155
AM406670.1	EMBL	CDS	1243819	1244181	.	-	0	ID=cds1153;Parent=gene1180;Dbxref=EnsemblGenomes-Gn:azo1155,EnsemblGenomes-Tr:CAL93772,GOA:A1K4L7,InterPro:IPR005538,UniProtKB/TrEMBL:A1K4L7,NCBI_GP:CAL93772.1;Name=CAL93772.1;Note=Conserved hypothetical membrane protein. This family is uncharacterised. It contains the protein LrgA that has been hypothesised to export murein hydrolases TREMBL:Q8XW06: 56%25 identity%2C 73%25 similarity InterPro:IPR005538%3B LrgA. Pfam: PF03788%3B LrgA%3B 1. ProDom: PD009239%3B LrgA Signal peptide present (Signal P predicted) TMH's 3 (TMHMM predicted)%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93772.1;transl_table=11
AM406670.1	EMBL	gene	1244251	1245189	.	-	.	ID=gene1181;Name=azo1156;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1156
AM406670.1	EMBL	CDS	1244251	1245189	.	-	0	ID=cds1154;Parent=gene1181;Dbxref=EnsemblGenomes-Gn:azo1156,EnsemblGenomes-Tr:CAL93773,UniProtKB/TrEMBL:A1K4L8,NCBI_GP:CAL93773.1;Name=CAL93773.1;Note=Conserved hypothetical membrane protein. Homology to Daro03002578 of Dechloromonas aromatica of 75%25 (gi|41723981|ref|ZP_00150871.1|(NBCI ENTREZ)). Has PF07670%2C Nucleoside recognition%3B This region in the nucleoside transporter proteins are responsible for determining nucleoside specificity in the human CNT1 and CNT2 proteins. In the FeoB proteins%2C which are believed to be Fe2+ transporters%2C it includes the membrane pore region%2C so the function of this region is likely to be more general than just nucleoside specificity. This family may represent the pore and gate%2C with a wide potential range of specificity. Hence its name 'Gate'. no signal peptide. 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93773.1;transl_table=11
AM406670.1	EMBL	gene	1245583	1245789	.	-	.	ID=gene1182;Name=azo1157;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1157
AM406670.1	EMBL	CDS	1245583	1245789	.	-	0	ID=cds1155;Parent=gene1182;Dbxref=EnsemblGenomes-Gn:azo1157,EnsemblGenomes-Tr:CAL93774,UniProtKB/TrEMBL:A1K4L9,NCBI_GP:CAL93774.1;Name=CAL93774.1;Note=Hypothetical secreted protein. Signal Peptide present. No good homolgous hits in the PDB. No TMHs No domains predicted.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93774.1;transl_table=11
AM406670.1	EMBL	gene	1246197	1247258	.	+	.	ID=gene1183;Name=ncd2;gbkey=Gene;gene=ncd2;gene_biotype=protein_coding;locus_tag=azo1158
AM406670.1	EMBL	CDS	1246197	1247258	.	+	0	ID=cds1156;Parent=gene1183;Dbxref=EnsemblGenomes-Gn:azo1158,EnsemblGenomes-Tr:CAL93775,GOA:A1K4M0,InterPro:IPR004136,InterPro:IPR013785,UniProtKB/TrEMBL:A1K4M0,NCBI_GP:CAL93775.1;Name=CAL93775.1;Note=TREMBL:Q9HWH9: 45%25 identity%2C 52%25 similarity 2-nitropropane dioxygenase (EC 1.13.11.32) (Nitroalkane oxidase) (2-NPD). CATALYZES THE OXYGENATIVE DENITRIFICATION OF VARIOUS ANIONIC NITROALKANES. InterPro: 2-nitropropane dioxygenase InterPro:IPR004136%3B 2nprop_dioxygen. IPR003009%3B FMN_enzyme. Pfam PF03060%3B NPD thiE: thiamine-phosphate pyrophosphoryl No transmembrane helices (TMHMM predicted)%3B~High confidence in function and specificity;gbkey=CDS;gene=ncd2;product=probable 2-nitropropane dioxygenase;protein_id=CAL93775.1;transl_table=11
AM406670.1	EMBL	gene	1247367	1248971	.	-	.	ID=gene1184;Name=aceB;gbkey=Gene;gene=aceB;gene_biotype=protein_coding;locus_tag=azo1159
AM406670.1	EMBL	CDS	1247367	1248971	.	-	0	ID=cds1157;Parent=gene1184;Dbxref=EnsemblGenomes-Gn:azo1159,EnsemblGenomes-Tr:CAL93776,GOA:A1K4M1,InterPro:IPR001465,InterPro:IPR006252,InterPro:IPR011076,InterPro:IPR019830,UniProtKB/TrEMBL:A1K4M1,NCBI_GP:CAL93776.1;Name=CAL93776.1;Note=Malate synthase. Homology to aceB of A. eutropus of 73%25 (trembl|Q8VM95). CATALYTIC ACTIVITY: Acetyl-CoA + H(2)O + glyoxylate %3D S-malate + CoA. Acts in the glyoxylate bypass. Pfam: Malate synthase no TMHs 1 HTH%3B~High confidence in function and specificity;gbkey=CDS;gene=aceB;product=AceB protein;protein_id=CAL93776.1;transl_table=11
AM406670.1	EMBL	gene	1248990	1249772	.	-	.	ID=gene1185;Name=azo1160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1160
AM406670.1	EMBL	CDS	1248990	1249772	.	-	0	ID=cds1158;Parent=gene1185;Dbxref=EnsemblGenomes-Gn:azo1160,EnsemblGenomes-Tr:CAL93777,GOA:A1K4M2,InterPro:IPR002781,UniProtKB/TrEMBL:A1K4M2,NCBI_GP:CAL93777.1;Name=CAL93777.1;Note=Conserved hypothetical membrane protein. Homology to mlr4286 of M. loti of 43%25 (trembl|Q98EE2) InterPro: IPR002781%3B DUF81.This domain is found in integral membrane proteins of prokaryotes which are uncharacterized Pfam:PF01925%3B DUF81 Signal peptide present and presence of 6 transmembrane helices%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93777.1;transl_table=11
AM406670.1	EMBL	gene	1249955	1250920	.	+	.	ID=gene1186;Name=azo1161;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1161
AM406670.1	EMBL	CDS	1249955	1250920	.	+	0	ID=cds1159;Parent=gene1186;Dbxref=EnsemblGenomes-Gn:azo1161,EnsemblGenomes-Tr:CAL93778,GOA:A1K4M3,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K4M3,NCBI_GP:CAL93778.1;Name=CAL93778.1;Note=Transcriptional regulator%2C LysR family This protein activates the transcription of the lysA gene encoding diaminopimelate decarboxylase. LysR is also a negative regulator of its own expression. 29%25 1 helixturnhelix PF03466 LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~Specificity unclear;gbkey=CDS;product=putative transcriptional regulator%2CLysR family;protein_id=CAL93778.1;transl_table=11
AM406670.1	EMBL	gene	1250865	1252127	.	-	.	ID=gene1187;Name=ttuD;gbkey=Gene;gene=ttuD;gene_biotype=protein_coding;locus_tag=azo1162
AM406670.1	EMBL	CDS	1250865	1252127	.	-	0	ID=cds1160;Parent=gene1187;Dbxref=EnsemblGenomes-Gn:azo1162,EnsemblGenomes-Tr:CAL93779,GOA:A1K4M4,InterPro:IPR007835,InterPro:IPR025286,UniProtKB/TrEMBL:A1K4M4,NCBI_GP:CAL93779.1;Name=CAL93779.1;Note=Putative hydroxypyruvate reductase. Degrades an unidentified toxic product from the first step of tartrate degradation. Involved in the second step of the tartrate degradation pathway. 59%25 MOFRL.IPR005346%3B UPF0125. Pfam:PF05161%3B MOFRL%3B 1.PF03658%3B UPF0125%3B 1. Signal peptide present.%3B~High confidence in function and specificity;gbkey=CDS;gene=ttuD;product=probable hydroxypyruvate reductase;protein_id=CAL93779.1;transl_table=11
AM406670.1	EMBL	gene	1252153	1252941	.	-	.	ID=gene1188;Name=gip;gbkey=Gene;gene=gip;gene_biotype=protein_coding;locus_tag=azo1163
AM406670.1	EMBL	CDS	1252153	1252941	.	-	0	ID=cds1161;Parent=gene1188;Dbxref=EnsemblGenomes-Gn:azo1163,EnsemblGenomes-Tr:CAL93780,GOA:A1K4M5,InterPro:IPR013022,InterPro:IPR017643,InterPro:IPR026040,UniProtKB/TrEMBL:A1K4M5,NCBI_GP:CAL93780.1;Name=CAL93780.1;Note=Hydroxypyruvate isomerase (EC 5.3.1.22).Catalyzes the reversible isomerization between hydroxypyruvate and 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde).Belongs to the hyi family. 52%25%3B~High confidence in function and specificity;gbkey=CDS;gene=gip;product=putative hydroxypyruvate isomerase;protein_id=CAL93780.1;transl_table=11
AM406670.1	EMBL	gene	1253717	1254214	.	+	.	ID=gene1189;Name=azo1164;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1164
AM406670.1	EMBL	CDS	1253717	1254214	.	+	0	ID=cds1162;Parent=gene1189;Dbxref=EnsemblGenomes-Gn:azo1164,EnsemblGenomes-Tr:CAL93781,UniProtKB/TrEMBL:A1K4M6,NCBI_GP:CAL93781.1;Name=CAL93781.1;Note=Conserved hypothetical protein. Homology to ORF153 of Rubrivivax gelatinosus of 48%25 (gi|55832787|gb|AAV66902.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93781.1;transl_table=11
AM406670.1	EMBL	gene	1254523	1256169	.	-	.	ID=gene1190;Name=lctP;gbkey=Gene;gene=lctP;gene_biotype=protein_coding;locus_tag=azo1165
AM406670.1	EMBL	CDS	1254523	1256169	.	-	0	ID=cds1163;Parent=gene1190;Dbxref=EnsemblGenomes-Gn:azo1165,EnsemblGenomes-Tr:CAL93782,GOA:A1K4M7,InterPro:IPR003804,UniProtKB/TrEMBL:A1K4M7,NCBI_GP:CAL93782.1;Name=CAL93782.1;Note=L-lactate permease. Homology to lctP of E. coli of 72%25 (sprot|LLDP_ECOLI) Transports L-lactate across the membrane. Can also transport D-lactate and glycolate. Seems to be driven by a proton motive force (By similarity). Tigrfam: lctP: L-lactate transport Pfam: L-lactate permease signal peptide 12 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=lctP;product=LctP protein;protein_id=CAL93782.1;transl_table=11
AM406670.1	EMBL	gene	1256528	1259305	.	-	.	ID=gene1191;Name=azo1166;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1166
AM406670.1	EMBL	CDS	1256528	1259305	.	-	0	ID=cds1164;Parent=gene1191;Dbxref=EnsemblGenomes-Gn:azo1166,EnsemblGenomes-Tr:CAL93783,GOA:A1K4M8,InterPro:IPR001450,InterPro:IPR004017,InterPro:IPR004113,InterPro:IPR006094,InterPro:IPR009051,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K4M8,NCBI_GP:CAL93783.1;Name=CAL93783.1;Note=Conserved hypothetical iron-sulfur binding oxidase. Homology to pa4772 of P. aeruginosa of 53%25 (pir|H83050) InterPro: FAD linked oxidase C-terminal (IPR004413) Pfam: FAD binding domain %3B Fad linked oxidase%2C C-terminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical iron-sulfur bindinding oxidase;protein_id=CAL93783.1;transl_table=11
AM406670.1	EMBL	gene	1259517	1260968	.	-	.	ID=gene1192;Name=azo1167;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1167
AM406670.1	EMBL	CDS	1259517	1260968	.	-	0	ID=cds1165;Parent=gene1192;Dbxref=EnsemblGenomes-Gn:azo1167,EnsemblGenomes-Tr:CAL93784,GOA:A1K4M9,InterPro:IPR003741,InterPro:IPR004452,InterPro:IPR009051,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR024185,InterPro:IPR024569,UniProtKB/TrEMBL:A1K4M9,NCBI_GP:CAL93784.1;Name=CAL93784.1;Note=Conserved hypothetical iron-sulfur protein. Homology to cv3028 of C. violaceum of 68%25 (trembl|Q7NTM6) Tigrfam: TIGR00273: iron-sulfur cluster binding protein Pfam: 4Fe-4S binding domain no TMHs no signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical iron-sulfur protein;protein_id=CAL93784.1;transl_table=11
AM406670.1	EMBL	gene	1260965	1261639	.	-	.	ID=gene1193;Name=azo1168;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1168
AM406670.1	EMBL	CDS	1260965	1261639	.	-	0	ID=cds1166;Parent=gene1193;Dbxref=EnsemblGenomes-Gn:azo1168,EnsemblGenomes-Tr:CAL93785,InterPro:IPR003741,InterPro:IPR024185,UniProtKB/TrEMBL:A1K4N0,NCBI_GP:CAL93785.1;Name=CAL93785.1;Note=Conserved hypothetical protein. Homology to DVU1781 of D.vulgaris of 45%25 (tremble:Q72B57). Has PF02589 DUF162 domain:Uncharacterized ACR%2C YkgG family. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93785.1;transl_table=11
AM406670.1	EMBL	gene	1261636	1262442	.	-	.	ID=gene1194;Name=azo1169;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1169
AM406670.1	EMBL	CDS	1261636	1262442	.	-	0	ID=cds1167;Parent=gene1194;Dbxref=EnsemblGenomes-Gn:azo1169,EnsemblGenomes-Tr:CAL93786,InterPro:IPR004017,UniProtKB/TrEMBL:A1K4N1,NCBI_GP:CAL93786.1;Name=CAL93786.1;Note=Conserved hypothetical protein. Homologyt to nma1648 of N. meiningitidis of 55%25 (trembl|Q825P5) InterPro: Domain of unknown function DUF224 (IPR004017) Pfam: Domain of unknown function no signal no TMHS;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93786.1;transl_table=11
AM406670.1	EMBL	gene	1262710	1263492	.	+	.	ID=gene1195;Name=lldR;gbkey=Gene;gene=lldR;gene_biotype=protein_coding;locus_tag=azo1170
AM406670.1	EMBL	CDS	1262710	1263492	.	+	0	ID=cds1168;Parent=gene1195;Dbxref=EnsemblGenomes-Gn:azo1170,EnsemblGenomes-Tr:CAL93787,GOA:A1K4N2,InterPro:IPR000524,InterPro:IPR008920,InterPro:IPR011711,InterPro:IPR011991,UniProtKB/TrEMBL:A1K4N2,NCBI_GP:CAL93787.1;Name=CAL93787.1;Note=Putative L-lactate dehydrogenase operon regulatory protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=lldR;product=probable L-lactate dehydrogenase operon regulatory protein;protein_id=CAL93787.1;transl_table=11
AM406670.1	EMBL	gene	1264770	1265240	.	+	.	ID=gene1196;Name=azo1171;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1171
AM406670.1	EMBL	CDS	1264770	1265240	.	+	0	ID=cds1169;Parent=gene1196;Dbxref=EnsemblGenomes-Gn:azo1171,EnsemblGenomes-Tr:CAL93788,UniProtKB/TrEMBL:A1K4N3,NCBI_GP:CAL93788.1;Name=CAL93788.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide. no TMH;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93788.1;transl_table=11
AM406670.1	EMBL	gene	1265498	1265653	.	+	.	ID=gene1197;Name=azo1172;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1172
AM406670.1	EMBL	CDS	1265498	1265653	.	+	0	ID=cds1170;Parent=gene1197;Dbxref=EnsemblGenomes-Gn:azo1172,EnsemblGenomes-Tr:CAL93789,GOA:A1K4N4,InterPro:IPR002059,InterPro:IPR012340,UniProtKB/TrEMBL:A1K4N4,NCBI_GP:CAL93789.1;Name=CAL93789.1;Note=Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56%25 (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93789.1;transl_table=11
AM406670.1	EMBL	gene	1265650	1266129	.	+	.	ID=gene1198;Name=azo1173;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1173
AM406670.1	EMBL	CDS	1265650	1266129	.	+	0	ID=cds1171;Parent=gene1198;Dbxref=EnsemblGenomes-Gn:azo1173,EnsemblGenomes-Tr:CAL93790,InterPro:IPR010718,UniProtKB/TrEMBL:A1K4N5,NCBI_GP:CAL93790.1;Name=CAL93790.1;Note=Conserved hypothetical membrane protein. Homology to the C-terminus of ne0717 of N. europaea of 57%25 (trembl|Q82WG3). Pfam: Protein of unknown function (DUF1294). No signal peptide. 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93790.1;transl_table=11
AM406670.1	EMBL	gene	1266287	1266538	.	+	.	ID=gene1199;Name=azo1174;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1174
AM406670.1	EMBL	CDS	1266287	1266538	.	+	0	ID=cds1172;Parent=gene1199;Dbxref=EnsemblGenomes-Gn:azo1174,EnsemblGenomes-Tr:CAL93791,UniProtKB/TrEMBL:A1K4N6,NCBI_GP:CAL93791.1;Name=CAL93791.1;Note=Hypothetical protein. No homology to the data bank. No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=hypothetical protein;protein_id=CAL93791.1;transl_table=11
AM406670.1	EMBL	gene	1266596	1269127	.	+	.	ID=gene1200;Name=nirB;gbkey=Gene;gene=nirB;gene_biotype=protein_coding;locus_tag=azo1175
AM406670.1	EMBL	CDS	1266596	1269127	.	+	0	ID=cds1173;Parent=gene1200;Dbxref=EnsemblGenomes-Gn:azo1175,EnsemblGenomes-Tr:CAL93792,GOA:A1K4N7,InterPro:IPR001327,InterPro:IPR005117,InterPro:IPR006066,InterPro:IPR006067,InterPro:IPR007419,InterPro:IPR012744,InterPro:IPR013027,InterPro:IPR017121,InterPro:IPR023753,UniProtKB/TrEMBL:A1K4N7,NCBI_GP:CAL93792.1;Name=CAL93792.1;Note=Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4). 76%25 EGF_like.IPR001327%3B FAD_pyr_redox. IPR007419%3BFer2_BFD.IPR006066%3B Nir_Si.IPR006067%3B Nir_Sir_4Fe4S. IPR005117%3B NiR_SiR_beta_fer. IPR001100%3B Pyr_redox. Pfam: PF04324%3B Fer2_BFD%3B 1.PF01077%3B NIR_SIR%3B 1.PF03460%3B NIR_SIR_ferr%3B 1. PF00070%3B Pyr_redox%3B 1. In E.coli%2C the NADH-dependent nitrite reductase catalyzes the six-electron reduction of nitrite to ammonia and also catalyzes the two-electron reduction of hydroxylamine to ammonia. The enzyme is a FAD-flavoprotein%2C and also contains a siroheme and one 2Fe-2S center.%3B~High confidence in function and specificity;gbkey=CDS;gene=nirB;product=nitrite reductase (NAD(P)H) large subunit%2Cprobable.;protein_id=CAL93792.1;transl_table=11
AM406670.1	EMBL	gene	1269149	1269487	.	+	.	ID=gene1201;Name=nirD;gbkey=Gene;gene=nirD;gene_biotype=protein_coding;locus_tag=azo1176
AM406670.1	EMBL	CDS	1269149	1269487	.	+	0	ID=cds1174;Parent=gene1201;Dbxref=EnsemblGenomes-Gn:azo1176,EnsemblGenomes-Tr:CAL93793,GOA:A1K4N8,InterPro:IPR012748,InterPro:IPR017881,InterPro:IPR017941,UniProtKB/TrEMBL:A1K4N8,NCBI_GP:CAL93793.1;Name=CAL93793.1;Note=Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4). REQUIRED FOR ACTIVITY OF THE REDUCTASE. 66%25 simialr to the nirD protein from R. solanacearum%2Ca probable nitrite reductase NADPH (small subunit) oxidoreductase protein [EC:1.7.1.4]. TREMBL:Q8XQK3. InterPro: Rieske iron-sulfur protein 2Fe-2S subunit In E.coli%2C the NADH-dependent nitrite reductase catalyzes the six-electron reduction of nitrite to ammonia and also catalyzes the two-electron reduction of hydroxylamine to ammonia. The enzyme is a FAD-flavoprotein%2C and also contains a siroheme and one 2Fe-2S center.%3B~Conserved hypothetical protein;gbkey=CDS;gene=nirD;product=nitrite reductase small subunit%2C probable.;protein_id=CAL93793.1;transl_table=11
AM406670.1	EMBL	gene	1269519	1270331	.	+	.	ID=gene1202;Name=nirC;gbkey=Gene;gene=nirC;gene_biotype=protein_coding;locus_tag=azo1177
AM406670.1	EMBL	CDS	1269519	1270331	.	+	0	ID=cds1175;Parent=gene1202;Dbxref=EnsemblGenomes-Gn:azo1177,EnsemblGenomes-Tr:CAL93794,GOA:A1K4N9,InterPro:IPR000292,InterPro:IPR023271,UniProtKB/TrEMBL:A1K4N9,NCBI_GP:CAL93794.1;Name=CAL93794.1;Note=76%25 For/Nit_transpt. Pfam: PF01226%3B Form_Nir_trans%3B 1. In E. coli%2C NirC is a putative nitrite transporter which is a member of the FNT family of formate and nitrite transporters. The nirC gene is located in the nir operon which codes for a NADH-dependent nitrite reductase. NirC may function to import nitrite as a substrate for this enzyme complex. The nir operon is anaerobically expressed and is repressed by oxygen. TMhelix:6%3B~High confidence in function and specificity;gbkey=CDS;gene=nirC;product=putative nitrite transporter;protein_id=CAL93794.1;transl_table=11
AM406670.1	EMBL	gene	1270372	1272093	.	+	.	ID=gene1203;Name=azo1178;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1178
AM406670.1	EMBL	CDS	1270372	1272093	.	+	0	ID=cds1176;Parent=gene1203;Dbxref=EnsemblGenomes-Gn:azo1178,EnsemblGenomes-Tr:CAL93795,GOA:A1K4P0,InterPro:IPR000719,InterPro:IPR001932,InterPro:IPR008266,InterPro:IPR011009,UniProtKB/TrEMBL:A1K4P0,NCBI_GP:CAL93795.1;Name=CAL93795.1;Note=Putative serin/threonin protein kinase%2C%3B~Family membership;gbkey=CDS;product=putative serine/threonine protein kinase;protein_id=CAL93795.1;transl_table=11
AM406670.1	EMBL	gene	1272191	1272715	.	-	.	ID=gene1204;Name=allA;gbkey=Gene;gene=allA;gene_biotype=protein_coding;locus_tag=azo1179
AM406670.1	EMBL	CDS	1272191	1272715	.	-	0	ID=cds1177;Parent=gene1204;Dbxref=EnsemblGenomes-Gn:azo1179,EnsemblGenomes-Tr:CAL93796,GOA:A1K4P1,InterPro:IPR007247,InterPro:IPR011051,InterPro:IPR023525,InterPro:IPR024060,UniProtKB/TrEMBL:A1K4P1,NCBI_GP:CAL93796.1;Name=CAL93796.1;Note=High confidence in function and specificity;gbkey=CDS;gene=allA;product=ureidoglycolate hydrolase;protein_id=CAL93796.1;transl_table=11
AM406670.1	EMBL	gene	1272715	1273755	.	-	.	ID=gene1205;Name=alc;gbkey=Gene;gene=alc;gene_biotype=protein_coding;locus_tag=azo1180
AM406670.1	EMBL	CDS	1272715	1273755	.	-	0	ID=cds1178;Parent=gene1205;Dbxref=EnsemblGenomes-Gn:azo1180,EnsemblGenomes-Tr:CAL93797,GOA:A1K4P2,InterPro:IPR005164,InterPro:IPR008979,InterPro:IPR015908,UniProtKB/TrEMBL:A1K4P2,NCBI_GP:CAL93797.1;Name=CAL93797.1;Note=Allantoicase (Allantoate amidinohydrolase)%3B~High confidence in function and specificity;gbkey=CDS;gene=alc;product=Allantoicase;protein_id=CAL93797.1;transl_table=11
AM406670.1	EMBL	gene	1274116	1275063	.	-	.	ID=gene1206;Name=azo1181;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1181
AM406670.1	EMBL	CDS	1274116	1275063	.	-	0	ID=cds1179;Parent=gene1206;Dbxref=EnsemblGenomes-Gn:azo1181,EnsemblGenomes-Tr:CAL93798,GOA:A1K4P3,InterPro:IPR002509,InterPro:IPR011330,InterPro:IPR017625,UniProtKB/TrEMBL:A1K4P3,NCBI_GP:CAL93798.1;Name=CAL93798.1;Note=Polysaccharide deacetylase family protein.This family of polysaccharide deacetylases includes NodB(nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase.It also includes chitin deacetylase from yeast%2Cand endoxylanases which hydrolyses glucosidic bonds in xylan. 62%25 Polysac_deacet. Pfam:PF01522%3B Polysacc_deac_1. TIGR:PP4286.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical deacetylase protein;protein_id=CAL93798.1;transl_table=11
AM406670.1	EMBL	gene	1275084	1275611	.	-	.	ID=gene1207;Name=azo1182;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1182
AM406670.1	EMBL	CDS	1275084	1275611	.	-	0	ID=cds1180;Parent=gene1207;Dbxref=EnsemblGenomes-Gn:azo1182,EnsemblGenomes-Tr:CAL93799,GOA:A1K4P4,InterPro:IPR017580,InterPro:IPR018020,UniProtKB/TrEMBL:A1K4P4,NCBI_GP:CAL93799.1;Name=CAL93799.1;Note=Conserved hypothetical protein. Homology to RS01483 of R.solanacearum of 55%25 (tremble:Q8XXJ2). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93799.1;transl_table=11
AM406670.1	EMBL	gene	1275648	1276844	.	-	.	ID=gene1208;Name=azo1183;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1183
AM406670.1	EMBL	CDS	1275648	1276844	.	-	0	ID=cds1181;Parent=gene1208;Dbxref=EnsemblGenomes-Gn:azo1183,EnsemblGenomes-Tr:CAL93800,GOA:A1K4P5,InterPro:IPR003088,InterPro:IPR009056,InterPro:IPR010389,UniProtKB/TrEMBL:A1K4P5,NCBI_GP:CAL93800.1;Name=CAL93800.1;Note=Conserved hypothetical membrane protein. Homology to RS01489 of Ralstonia solanacearum of 50%25 (trembl|Q8XXJ8(SRS)) Has PF06181:Protein of unknown function (DUF989)%3BThis family consists of several hypothetical bacterial proteins of unknown function. no signal peptide 8 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93800.1;transl_table=11
AM406670.1	EMBL	gene	1276863	1277213	.	-	.	ID=gene1209;Name=azo1184;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1184
AM406670.1	EMBL	CDS	1276863	1277213	.	-	0	ID=cds1182;Parent=gene1209;Dbxref=EnsemblGenomes-Gn:azo1184,EnsemblGenomes-Tr:CAL93801,GOA:A1K4P6,InterPro:IPR000895,InterPro:IPR014306,InterPro:IPR023416,InterPro:IPR023418,InterPro:IPR023419,UniProtKB/TrEMBL:A1K4P6,NCBI_GP:CAL93801.1;Name=CAL93801.1;Note=Conserved hypothetical transthyretin. Homology to pa1518 of P. aeruniosa of 62%25 (sprot|YF18_PSEAE) InterPro: Transthyretin precursor (IPR000895) Pfam: Transthyretin precursor no signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical transthyretin;protein_id=CAL93801.1;transl_table=11
AM406670.1	EMBL	gene	1277327	1278304	.	-	.	ID=gene1210;Name=pip;gbkey=Gene;gene=pip;gene_biotype=protein_coding;locus_tag=azo1185
AM406670.1	EMBL	CDS	1277327	1278304	.	-	0	ID=cds1183;Parent=gene1210;Dbxref=EnsemblGenomes-Gn:azo1185,EnsemblGenomes-Tr:CAL93802,GOA:A1K4P7,InterPro:IPR002410,InterPro:IPR005944,InterPro:IPR029058,UniProtKB/TrEMBL:A1K4P7,NCBI_GP:CAL93802.1;Name=CAL93802.1;Note=TREMBL:Q8PC98: 42%25 identity%2C 54%25 similarity. Proline iminopeptidase (EC 3.4.11.5) (Prolyl aminopeptidase) (PAP). SPECIFICALLY CATALYZES THE REMOVAL OF N-TERMINAL PROLINE RESIDUES FROM PEPTIDES (BY SIMILARITY). InterPro:IPR000073%3B A/b_hydrolase. IPR003089%3B AB_hydrolase. IPR002410%3B Peptidase_S33. IPR005944%3B Pept_S33. IPR000379%3B Ser_estrs. Pfam PF00561%3B Abhydrolase_1%3B TIGRFAMs: TIGR01249%3B pro_imino_pep_1 TIGR00149: conserved hypothetical protein%3B~Specificity unclear;gbkey=CDS;gene=pip;product=probable proline iminopeptidase;protein_id=CAL93802.1;transl_table=11
AM406670.1	EMBL	gene	1278781	1279233	.	+	.	ID=gene1211;Name=azo1186;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1186
AM406670.1	EMBL	CDS	1278781	1279233	.	+	0	ID=cds1184;Parent=gene1211;Dbxref=EnsemblGenomes-Gn:azo1186,EnsemblGenomes-Tr:CAL93803,UniProtKB/TrEMBL:A1K4P8,NCBI_GP:CAL93803.1;Name=CAL93803.1;gbkey=CDS;inference=nucleotide motif:Gismo;product=hypothetical protein;protein_id=CAL93803.1;transl_table=11
AM406670.1	EMBL	gene	1279714	1280628	.	+	.	ID=gene1212;Name=pqqB;gbkey=Gene;gene=pqqB;gene_biotype=protein_coding;locus_tag=azo1187
AM406670.1	EMBL	CDS	1279714	1280628	.	+	0	ID=cds1185;Parent=gene1212;Dbxref=EnsemblGenomes-Gn:azo1187,EnsemblGenomes-Tr:CAL93804,GOA:A1K4P9,InterPro:IPR001279,InterPro:IPR011842,NCBI_GP:CAL93804.1;Name=CAL93804.1;Note=Coenzyme PQQ synthesis protein B (Pyrroloquinoline quinone biosynthesis protein B) (Coenzyme PQQ synthesis protein D)%3B~High confidence in function and specificity;gbkey=CDS;gene=pqqB;product=probable coenzyme PQQ synthesis protein B;protein_id=CAL93804.1;transl_table=11
AM406670.1	EMBL	gene	1280664	1281455	.	+	.	ID=gene1213;Name=pqqC;gbkey=Gene;gene=pqqC;gene_biotype=protein_coding;locus_tag=azo1188
AM406670.1	EMBL	CDS	1280664	1281455	.	+	0	ID=cds1186;Parent=gene1213;Dbxref=EnsemblGenomes-Gn:azo1188,EnsemblGenomes-Tr:CAL93805,GOA:A1K4Q0,InterPro:IPR004305,InterPro:IPR011845,InterPro:IPR016084,UniProtKB/TrEMBL:A1K4Q0,NCBI_GP:CAL93805.1;Name=CAL93805.1;Note=Coenzyme PQQ synthesis protein C .is a member of six genes%2C constituting the pqqABCDEF operon%2C which are required for the synthesis of the cofactor pyrroloquinoline quinone (PQQ).This family consists of several bacterial coenzyme PQQ synthesis protein C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is the prosthetic group of several bacterial enzymes%2Cincluding methanol dehydrogenase of methylotrophs and the glucose dehydrogenase of a number of bacteria. PQQC has been found to be required in the synthesis of PQQ but its function is unclear. Shares 60%25 identity(75%25 similarity) with pqqC gene from Klebsiella pneumoniae. pfam05312%2C Q88QV6 mazG: MazG family protein%3B~High confidence in function and specificity;gbkey=CDS;gene=pqqC;product=coenzyme PQQ synthesis protein C;protein_id=CAL93805.1;transl_table=11
AM406670.1	EMBL	gene	1281634	1281900	.	+	.	ID=gene1214;Name=pqqD;gbkey=Gene;gene=pqqD;gene_biotype=protein_coding;locus_tag=azo1189
AM406670.1	EMBL	CDS	1281634	1281900	.	+	0	ID=cds1187;Parent=gene1214;Dbxref=EnsemblGenomes-Gn:azo1189,EnsemblGenomes-Tr:CAL93806,GOA:A1K4Q1,InterPro:IPR008792,InterPro:IPR022479,UniProtKB/TrEMBL:A1K4Q1,NCBI_GP:CAL93806.1;Name=CAL93806.1;Note=Coenzyme PQQ synthesis protein D .This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis. 65%25 similarity with Klebsiella pneumoniae and 80%25%3B~Family membership;gbkey=CDS;gene=pqqD;product=PqqD protein;protein_id=CAL93806.1;transl_table=11
AM406670.1	EMBL	gene	1281902	1283056	.	+	.	ID=gene1215;Name=pqqE;gbkey=Gene;gene=pqqE;gene_biotype=protein_coding;locus_tag=azo1190
AM406670.1	EMBL	CDS	1281902	1283056	.	+	0	ID=cds1188;Parent=gene1215;Dbxref=EnsemblGenomes-Gn:azo1190,EnsemblGenomes-Tr:CAL93807,GOA:A1K4Q2,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR011843,InterPro:IPR013785,InterPro:IPR017200,InterPro:IPR023885,UniProtKB/TrEMBL:A1K4Q2,NCBI_GP:CAL93807.1;Name=CAL93807.1;Note=Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone biosynthesis protein E).PART OF THE PQQ OPERON. Q88QV8: 58%25 identity%2C 74%25 similarity with Klebsiella pneumoniae InterProIPR000385%2C InterProIPR007197%2CPfamPF04055%2C SMARTSM00729%2C InterProIPR006638 cofactor:iron-sulfur cluster (potential). pathway:pyrroloquinoline quinone (pqq) biosynthesis. similarity: belongs to the radical sam superfamily%2C pqqE family TIGR PP0376%3B HAMAP MF_00660%3B Pfam PF04055%3B Radical_SAM%3B PROSITE: PS01305%3B MOAA_NIFB_PQQE%3B~High confidence in function and specificity;gbkey=CDS;gene=pqqE;product=pyrroloquinoline quinone synthesis protein E;protein_id=CAL93807.1;transl_table=11
AM406670.1	EMBL	gene	1283196	1283271	.	+	.	ID=gene1216;Name=tRNA-Thr;gbkey=Gene;gene=tRNA-Thr;gene_biotype=tRNA;locus_tag=azo_tRNA_0024
AM406670.1	EMBL	tRNA	1283196	1283271	.	+	.	ID=rna27;Parent=gene1216;anticodon=(pos:1283229..1283231);gbkey=tRNA;gene=tRNA-Thr;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Thr
AM406670.1	EMBL	exon	1283196	1283271	.	+	.	ID=id28;Parent=rna27;anticodon=(pos:1283229..1283231);gbkey=tRNA;gene=tRNA-Thr;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Thr
AM406670.1	EMBL	gene	1283387	1283563	.	-	.	ID=gene1217;Name=azo1191;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1191
AM406670.1	EMBL	CDS	1283387	1283563	.	-	0	ID=cds1189;Parent=gene1217;Dbxref=EnsemblGenomes-Gn:azo1191,EnsemblGenomes-Tr:CAL93808,UniProtKB/TrEMBL:A1K4Q3,NCBI_GP:CAL93808.1;Name=CAL93808.1;Note=Hypothetical protein. Has very bad homology with hits in the database. No Signficant motifs%2C domains or Signal peptide known to be present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL93808.1;transl_table=11
AM406670.1	EMBL	gene	1283668	1284468	.	-	.	ID=gene1218;Name=azo1192;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1192
AM406670.1	EMBL	CDS	1283668	1284468	.	-	0	ID=cds1190;Parent=gene1218;Dbxref=EnsemblGenomes-Gn:azo1192,EnsemblGenomes-Tr:CAL93809,InterPro:IPR024787,UniProtKB/TrEMBL:A1K4Q4,NCBI_GP:CAL93809.1;Name=CAL93809.1;Note=Conserved hypothetical protein. Homology to XAC0112 of X.axonopodis of 44%25 (trembl:Q8PR54). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93809.1;transl_table=11
AM406670.1	EMBL	gene	1284477	1285598	.	-	.	ID=gene1219;Name=hppD;gbkey=Gene;gene=hppD;gene_biotype=protein_coding;locus_tag=azo1193
AM406670.1	EMBL	CDS	1284477	1285598	.	-	0	ID=cds1191;Parent=gene1219;Dbxref=EnsemblGenomes-Gn:azo1193,EnsemblGenomes-Tr:CAL93810,GOA:A1K4Q5,InterPro:IPR004360,InterPro:IPR005956,InterPro:IPR029068,UniProtKB/TrEMBL:A1K4Q5,NCBI_GP:CAL93810.1;Name=CAL93810.1;Note=Probable 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4HPPD) (HPD) (HPPDase). Homology to hppD of Pseudomonas sp. of 56%25 (pir|S21209) Catalysis of the reaction: 4-hydroxyphenylpyruvate + O2 %3D homogentisate + CO2. Pfam: Glaxolase/Bleomycin resistance protein no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=hppD;product=probable 4-hydroxyphenylpyruvate dioxygenase;protein_id=CAL93810.1;transl_table=11
AM406670.1	EMBL	gene	1286022	1287257	.	+	.	ID=gene1220;Name=azo1194;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1194
AM406670.1	EMBL	CDS	1286022	1287257	.	+	0	ID=cds1192;Parent=gene1220;Dbxref=EnsemblGenomes-Gn:azo1194,EnsemblGenomes-Tr:CAL93811,InterPro:IPR010290,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K4Q6,NCBI_GP:CAL93811.1;Name=CAL93811.1;Note=Permease member of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 2A0121: H+ Antiporter protein 24%25 similarity to NorA who confer relatively high resistance to hydrophilic quinolones such as norfloxacin%2C enoxacin%2C ofloxacin%2C and ciprofloxacin in S. aureus. 20%25 similarity to TapA a multidrug efflux pump wich confers low level of resistance to aminoglycosides and tetracycline in Mycobaterium fortuitum and M. tuberculosis.%3B~Specificity unclear;gbkey=CDS;product=putative integral membrane efflux protein;protein_id=CAL93811.1;transl_table=11
AM406670.1	EMBL	gene	1287319	1288497	.	+	.	ID=gene1221;Name=argM;gbkey=Gene;gene=argM;gene_biotype=protein_coding;locus_tag=azo1195
AM406670.1	EMBL	CDS	1287319	1288497	.	+	0	ID=cds1193;Parent=gene1221;Dbxref=EnsemblGenomes-Gn:azo1195,EnsemblGenomes-Tr:CAL93812,GOA:A1K4Q7,InterPro:IPR004636,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K4Q7,NCBI_GP:CAL93812.1;Name=CAL93812.1;Note=Probable acetylornithine transaminase. Homology to argM of E. coli of 45%25 (sprot|ARGM_ECOLI). Catalyzes the transmination of n(2)-succinylornithine and alpha-ketoglutarate into n(2)-succinylglutamate semialdehyde and glutamate. Can also act as a acetylornithine aminotransferase. Tigrfam: argD: acetylornithine and succinylornithine aminotransferases Pfam: Aminotransferse class-III no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=argM;product=probable acetylornithine transaminase;protein_id=CAL93812.1;transl_table=11
AM406670.1	EMBL	gene	1288769	1289806	.	-	.	ID=gene1222;Name=azo1196;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1196
AM406670.1	EMBL	CDS	1288769	1289806	.	-	0	ID=cds1194;Parent=gene1222;Dbxref=EnsemblGenomes-Gn:azo1196,EnsemblGenomes-Tr:CAL93813,GOA:A1K4Q8,InterPro:IPR011251,InterPro:IPR019949,UniProtKB/TrEMBL:A1K4Q8,NCBI_GP:CAL93813.1;Name=CAL93813.1;Note=Conserved hypothetical protein. Homology to ypo3484 of y. pestis of 60%25 (trembl|Q8ZBD2). Pfam: Luciferase-like monooxygenase. no signla peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93813.1;transl_table=11
AM406670.1	EMBL	gene	1289811	1290620	.	-	.	ID=gene1223;Name=azo1197;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1197
AM406670.1	EMBL	CDS	1289811	1290620	.	-	0	ID=cds1195;Parent=gene1223;Dbxref=EnsemblGenomes-Gn:azo1197,EnsemblGenomes-Tr:CAL93814,GOA:A1K4Q9,InterPro:IPR003801,InterPro:IPR022838,NCBI_GP:CAL93814.1;Name=CAL93814.1;Note=Conserved hypothetical protein. Homology to NE1163 of N.europaea of 76%25 (tremble:Q82VD1) Has PF02649%2CUncharacterized ACR%2C DUF198 Domain%3B No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93814.1;transl_table=11
AM406670.1	EMBL	gene	1290707	1292566	.	-	.	ID=gene1224;Name=dxs;gbkey=Gene;gene=dxs;gene_biotype=protein_coding;locus_tag=azo1198
AM406670.1	EMBL	CDS	1290707	1292566	.	-	0	ID=cds1196;Parent=gene1224;Dbxref=EnsemblGenomes-Gn:azo1198,EnsemblGenomes-Tr:CAL93815,GOA:A1K4R0,InterPro:IPR005474,InterPro:IPR005475,InterPro:IPR005476,InterPro:IPR005477,InterPro:IPR009014,InterPro:IPR020826,InterPro:IPR029061,NCBI_GP:CAL93815.1;Name=CAL93815.1;Note=The enzyme 1-deoxy-D-xylulose 5-phosphate (DXP) synthase%2C probably a Dxs homodimer [ Kuzuyama00 ] %2C acts in the mevalonate-independent pathway of isopentenyl diphosphate biosynthesis%2C in thiamin biosynthesis%2C and pyridoxal biosynthesis [ Sprenger97 ].Overproduction of Dxs affects flux through the pathway under some circumstances.Dxs has similarity to transketolases [ Lois98 ] Entry name SWISSPROT:DXS_ECOLI Prim. accession # P77488 Identities %3D 358/614 (58%25) InterPro:- IPR005477%3B Dxs_synth. IPR009014%3B Transketo_C_like. IPR005476%3B Transketolase_C. IPR005475%3B Transketolase_CR. IPR005474%3B Transketolase_N. Pfam PF02779%3B transket_pyr%3B 1. PF02780%3B transketolase_C%3B 1. Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=dxs;product=probable 1-deoxy-D-xylulose 5-phosphate synthase;protein_id=CAL93815.1;transl_table=11
AM406670.1	EMBL	gene	1292594	1293496	.	-	.	ID=gene1225;Name=ispA;gbkey=Gene;gene=ispA;gene_biotype=protein_coding;locus_tag=azo1199
AM406670.1	EMBL	CDS	1292594	1293496	.	-	0	ID=cds1197;Parent=gene1225;Dbxref=EnsemblGenomes-Gn:azo1199,EnsemblGenomes-Tr:CAL93816,GOA:A1K4R1,InterPro:IPR000092,InterPro:IPR001849,InterPro:IPR008949,InterPro:IPR017446,UniProtKB/TrEMBL:A1K4R1,NCBI_GP:CAL93816.1;Name=CAL93816.1;Note=Geranylgeranyl pyrophosphate synthetase chloroplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltransferase (EC 2.5.1.1)%3B Geranyltranstransferase (EC 2.5.1.10)%3B Farnesyltranstransferase (EC 2.5.1.29)]. catalyzes the trans-addition of the three molecules of ipp onto dmapp to form geranylgeranyl pyrophosphate. InterPro: Polyprenyl synthetase%3B~High confidence in function and specificity;gbkey=CDS;gene=ispA;product=Geranyltranstransferase;protein_id=CAL93816.1;transl_table=11
AM406670.1	EMBL	gene	1293493	1293747	.	-	.	ID=gene1226;Name=xseB;gbkey=Gene;gene=xseB;gene_biotype=protein_coding;locus_tag=azo1200
AM406670.1	EMBL	CDS	1293493	1293747	.	-	0	ID=cds1198;Parent=gene1226;Dbxref=EnsemblGenomes-Gn:azo1200,EnsemblGenomes-Tr:CAL93817,GOA:A1K4R2,InterPro:IPR003761,NCBI_GP:CAL93817.1;Name=CAL93817.1;Note=Probable Probable exodeoxyribonuclease VII small subunit . InterPro: Exonuclease VII small subunit.%3B~Function unclear;gbkey=CDS;gene=xseB;product=Exodeoxyribonuclease VII;protein_id=CAL93817.1;transl_table=11
AM406670.1	EMBL	gene	1293877	1294977	.	+	.	ID=gene1227;Name=alcE;gbkey=Gene;gene=alcE;gene_biotype=protein_coding;locus_tag=azo1201
AM406670.1	EMBL	CDS	1293877	1294977	.	+	0	ID=cds1199;Parent=gene1227;Dbxref=EnsemblGenomes-Gn:azo1201,EnsemblGenomes-Tr:CAL93818,GOA:A1K4R3,InterPro:IPR015879,InterPro:IPR017941,UniProtKB/TrEMBL:A1K4R3,NCBI_GP:CAL93818.1;Name=CAL93818.1;Note=AlcE: iron-sulfur-containing dioxygenases%2C probably involved in alcaligin biosynthesis pathway in Bordetella species. Putative iron-sulfure protein involved in aromatic compounds degradations. Choline monooxygenase chloroplast precursor (EC 1.14.15.7). Catalyzes the first step of the osmoprotectant glycine betaine synthesis. InterPro: Rieske iron-sulfur protein 2Fe-2S subunit hypA: hydrogenase expression/formation pr%3B~Function unclear;gbkey=CDS;gene=alcE;product=putative iron-sulfur protein;protein_id=CAL93818.1;transl_table=11
AM406670.1	EMBL	gene	1295352	1296290	.	-	.	ID=gene1228;Name=lytB;gbkey=Gene;gene=lytB;gene_biotype=protein_coding;locus_tag=azo1202
AM406670.1	EMBL	CDS	1295352	1296290	.	-	0	ID=cds1200;Parent=gene1228;Dbxref=EnsemblGenomes-Gn:azo1202,EnsemblGenomes-Tr:CAL93819,GOA:A1K4R4,InterPro:IPR003451,NCBI_GP:CAL93819.1;Name=CAL93819.1;Note=4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2). Function:- Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) (By similarity). InterPro: LytB protein lytB: penicillin tolerance protein LytB SWISSPROT:ISPH_ECOLI Prim. accession # P22565 Identities %3D 185/308 (60%25) InterPro IPR003451%3B LytB. Pfam PF02401%3B LYTB%3B 1. TIGRFAMs TIGR00216%3B ispH_lytB%3B 1. TMHMM 0.0%2C Signal peptide probability: 0.000 Prediction: Non-secretory protein%3B~Family membership;gbkey=CDS;gene=lytB;product=probable 4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=CAL93819.1;transl_table=11
AM406670.1	EMBL	gene	1296320	1296748	.	-	.	ID=gene1229;Name=slpA;gbkey=Gene;gene=slpA;gene_biotype=protein_coding;locus_tag=azo1203
AM406670.1	EMBL	CDS	1296320	1296748	.	-	0	ID=cds1201;Parent=gene1229;Dbxref=EnsemblGenomes-Gn:azo1203,EnsemblGenomes-Tr:CAL93820,GOA:A1K4R5,InterPro:IPR001179,InterPro:IPR023566,UniProtKB/TrEMBL:A1K4R5,NCBI_GP:CAL93820.1;Name=CAL93820.1;Note=Putative peptidyl-prolyl cis-trans isomerase. Homology to slpA of E. coli of 39%25 (sprot|FKBX_ECOLI) Accelerate protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. InterPro: FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)(IPR001179) Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=slpA;product=putative peptidyl-prolyl cis-trans isomerase;protein_id=CAL93820.1;transl_table=11
AM406670.1	EMBL	gene	1296745	1297275	.	-	.	ID=gene1230;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=azo1204
AM406670.1	EMBL	CDS	1296745	1297275	.	-	0	ID=cds1202;Parent=gene1230;Dbxref=EnsemblGenomes-Gn:azo1204,EnsemblGenomes-Tr:CAL93821,GOA:A1K4R6,InterPro:IPR001872,NCBI_GP:CAL93821.1;Name=CAL93821.1;Note=Probable signal peptidase II (EC 3.4.23.36) (Prolipoprotein signal peptidase) (Signal peptidase II) (SPase II). This protein specifically catalyzes the removal of signal peptides from prolipoproteins (By similarity). lspA: lipoprotein signal peptidase Pfam: Peptidase_AS probable 5 TMH no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=lspA;product=probable signal peptidase II;protein_id=CAL93821.1;transl_table=11
AM406670.1	EMBL	gene	1297268	1300066	.	-	.	ID=gene1231;Name=azo1205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1205
AM406670.1	EMBL	CDS	1297268	1300066	.	-	0	ID=cds1203;Parent=gene1231;Dbxref=EnsemblGenomes-Gn:azo1205,EnsemblGenomes-Tr:CAL93822,GOA:A1K4R7,InterPro:IPR001412,InterPro:IPR002300,InterPro:IPR002301,InterPro:IPR009008,InterPro:IPR009080,InterPro:IPR010663,InterPro:IPR013155,InterPro:IPR014729,InterPro:IPR023585,NCBI_GP:CAL93822.1;Name=CAL93822.1;Note=Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS).%3B~High confidence in function and specificity;gbkey=CDS;product=IleS protein;protein_id=CAL93822.1;transl_table=11
AM406670.1	EMBL	gene	1300081	1301079	.	-	.	ID=gene1232;Name=ribF;gbkey=Gene;gene=ribF;gene_biotype=protein_coding;locus_tag=azo1206
AM406670.1	EMBL	CDS	1300081	1301079	.	-	0	ID=cds1204;Parent=gene1232;Dbxref=EnsemblGenomes-Gn:azo1206,EnsemblGenomes-Tr:CAL93823,GOA:A1K4R8,InterPro:IPR002606,InterPro:IPR014729,InterPro:IPR015864,InterPro:IPR015865,InterPro:IPR023465,InterPro:IPR023468,UniProtKB/TrEMBL:A1K4R8,NCBI_GP:CAL93823.1;Name=CAL93823.1;Note=Riboflavin biosynthesis protein ribF [Includes: Riboflavin kinase (EC 2.7.1.26) (Flavokinase)%3B FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase)]. ribF: riboflavin biosynthesis protein R%3B~High confidence in function and specificity;gbkey=CDS;gene=ribF;product=riboflavin kinase / FMN adenylyltransferase.;protein_id=CAL93823.1;transl_table=11
AM406670.1	EMBL	gene	1301459	1301782	.	+	.	ID=gene1233;Name=azo1207;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1207
AM406670.1	EMBL	CDS	1301459	1301782	.	+	0	ID=cds1205;Parent=gene1233;Dbxref=EnsemblGenomes-Gn:azo1207,EnsemblGenomes-Tr:CAL93824,UniProtKB/TrEMBL:A1K4R9,NCBI_GP:CAL93824.1;Name=CAL93824.1;Note=Hypothetical protein predicted by Glimmer/Critica. No homology to the data bank. No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL93824.1;transl_table=11
AM406670.1	EMBL	gene	1301779	1302555	.	+	.	ID=gene1234;Name=gloB1;gbkey=Gene;gene=gloB1;gene_biotype=protein_coding;locus_tag=azo1208
AM406670.1	EMBL	CDS	1301779	1302555	.	+	0	ID=cds1206;Parent=gene1234;Dbxref=EnsemblGenomes-Gn:azo1208,EnsemblGenomes-Tr:CAL93825,GOA:A1K4S0,InterPro:IPR001279,InterPro:IPR017782,UniProtKB/TrEMBL:A1K4S0,NCBI_GP:CAL93825.1;Name=CAL93825.1;Note=Hydroxyacylglutathione hydrolase (EC 3.1.2.6) (Glyoxalase II) (Glx II). Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid. Zn dependent Hydrolase belonging to glyoxalase II family of proteins. Presence of KOW motif%2Cand PA domain.Presence of signal peptide. probably functioning as Carbamoylphosphate synthase L chain. 50%25 identity and 60%25 similarity to Bordetella pertussis hydrolase. InterPro: Metallo-beta-lactamase superfamily gidA: glucose-inhibited division protein%3B~Family membership;gbkey=CDS;gene=gloB1;product=probable hydroxyacylglutathione hydrolase;protein_id=CAL93825.1;transl_table=11
AM406670.1	EMBL	gene	1302969	1303301	.	+	.	ID=gene1235;Name=azo1209;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1209
AM406670.1	EMBL	CDS	1302969	1303301	.	+	0	ID=cds1207;Parent=gene1235;Dbxref=EnsemblGenomes-Gn:azo1209,EnsemblGenomes-Tr:CAL93826,UniProtKB/TrEMBL:A1K4S1,NCBI_GP:CAL93826.1;Name=CAL93826.1;Note=Hypothetical protein predicted by Glimmer/Critica. No homology to the data bank. No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL93826.1;transl_table=11
AM406670.1	EMBL	gene	1303298	1304290	.	+	.	ID=gene1236;Name=azo1210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1210
AM406670.1	EMBL	CDS	1303298	1304290	.	+	0	ID=cds1208;Parent=gene1236;Dbxref=EnsemblGenomes-Gn:azo1210,EnsemblGenomes-Tr:CAL93827,InterPro:IPR003495,InterPro:IPR011629,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4S2,NCBI_GP:CAL93827.1;Name=CAL93827.1;Note=TREMBLnew:CAE26305: 46%25 identity%2C 65%25 similarity. sprot:YJIA_ECOLI%2C 33%25 identity%2C 55%25 similarity Hypothetical protein. Pfam:cobW: Cobalmine synthesis protein%3B ABC_tran TIGRFAM: MMR_HSR1- GTPASE of unknown function InterPro: Cobalamin synthesis protein/P47K mobB: molybdopterin-guanine dinucleotid%3B~Conserved hypothetical protein;gbkey=CDS;product=putative GTPase;protein_id=CAL93827.1;transl_table=11
AM406670.1	EMBL	gene	1304287	1305360	.	+	.	ID=gene1237;Name=azo1211;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1211
AM406670.1	EMBL	CDS	1304287	1305360	.	+	0	ID=cds1209;Parent=gene1237;Dbxref=EnsemblGenomes-Gn:azo1211,EnsemblGenomes-Tr:CAL93828,GOA:A1K4S3,InterPro:IPR001680,InterPro:IPR011041,InterPro:IPR015943,UniProtKB/TrEMBL:A1K4S3,NCBI_GP:CAL93828.1;Name=CAL93828.1;Note=Conserved hypothetical protein. Homology bll7767 of B. japonicum of 30%25 (trembl|Q89CN0) Pfam: WD domain%2C G-beta repeat no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93828.1;transl_table=11
AM406670.1	EMBL	gene	1305397	1305612	.	+	.	ID=gene1238;Name=azo1212;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1212
AM406670.1	EMBL	CDS	1305397	1305612	.	+	0	ID=cds1210;Parent=gene1238;Dbxref=EnsemblGenomes-Gn:azo1212,EnsemblGenomes-Tr:CAL93829,UniProtKB/TrEMBL:A1K4S4,NCBI_GP:CAL93829.1;Name=CAL93829.1;Note=Conserved hypothetical protein. Homology to Rsph03000178 of Rhodobacter sphaeroides of 37%25. No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93829.1;transl_table=11
AM406670.1	EMBL	gene	1305750	1306688	.	+	.	ID=gene1239;Name=qbdB1;gbkey=Gene;gene=qbdB1;gene_biotype=protein_coding;locus_tag=azo1213
AM406670.1	EMBL	CDS	1305750	1306688	.	+	0	ID=cds1211;Parent=gene1239;Dbxref=EnsemblGenomes-Gn:azo1213,EnsemblGenomes-Tr:CAL93830,InterPro:IPR025737,UniProtKB/TrEMBL:A1K4S5,NCBI_GP:CAL93830.1;Name=CAL93830.1;Note=Conserved hypothetical secreted protein. Homology to qbdB of Pseudomonas putida of 50%25 (gi|22779360|dbj|BAC15558.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;gene=qbdB1;product=conserved hypothetical secreted protein;protein_id=CAL93830.1;transl_table=11
AM406670.1	EMBL	gene	1306817	1307347	.	+	.	ID=gene1240;Name=azo1214;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1214
AM406670.1	EMBL	CDS	1306817	1307347	.	+	0	ID=cds1212;Parent=gene1240;Dbxref=EnsemblGenomes-Gn:azo1214,EnsemblGenomes-Tr:CAL93831,InterPro:IPR009476,UniProtKB/TrEMBL:A1K4S6,NCBI_GP:CAL93831.1;Name=CAL93831.1;Note=Conserved hypothetical membrane protein. Homology to Rgel02003151 of Rubrivivax gelatinosus of 37%25 (gi|47572524|ref|ZP_00242567.1|(NBCI ENTREZ)). PF06496%2CProtein of unknown function (DUF1097)%3BIPR009476%3BThis family consists of several bacterial putative membrane proteins. signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93831.1;transl_table=11
AM406670.1	EMBL	gene	1307593	1308540	.	+	.	ID=gene1241;Name=mntC2;gbkey=Gene;gene=mntC2;gene_biotype=protein_coding;locus_tag=azo1215
AM406670.1	EMBL	CDS	1307593	1308540	.	+	0	ID=cds1213;Parent=gene1241;Dbxref=EnsemblGenomes-Gn:azo1215,EnsemblGenomes-Tr:CAL93832,GOA:A1K4S7,InterPro:IPR006127,InterPro:IPR006128,InterPro:IPR006129,UniProtKB/TrEMBL:A1K4S7,NCBI_GP:CAL93832.1;Name=CAL93832.1;Note=Part of the ABC transporter complex mntABC involved in manganese uptake. 28%25 Similar to the putative periplasmic-binding protein MntC precursor in N gonorrhoaeae%2C also involved in the resistance to oxidative stress. TREMBL:Q9F4F6 InterPro:IPR006128%3B Lipoprotein_4.IPR006127%3B SBP_bac_9. Pfam:PF01297%3B SBP_bac_9%3B 1. Signal peptide present.TMHelix:1 This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.This protein also could act as an adhesin which is involved on adherence to extracellular matrix.%3B~High confidence in function and specificity;gbkey=CDS;gene=mntC2;product=putative periplasmic solute binding protein;protein_id=CAL93832.1;transl_table=11
AM406670.1	EMBL	gene	1308560	1309357	.	+	.	ID=gene1242;Name=mntA2;gbkey=Gene;gene=mntA2;gene_biotype=protein_coding;locus_tag=azo1216
AM406670.1	EMBL	CDS	1308560	1309357	.	+	0	ID=cds1214;Parent=gene1242;Dbxref=EnsemblGenomes-Gn:azo1216,EnsemblGenomes-Tr:CAL93833,GOA:A1K4S8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4S8,NCBI_GP:CAL93833.1;Name=CAL93833.1;Note=Manganese transport system ATP-binding protein mntA. This protein is probably a component of a manganese permease a binding protein-dependent ATP-driven transport system (mntABC). Probably responsible for energy coupling to the transport system. 40%25 AAA_ATPase.IPR003439%2CAAA ATPase superfamily%3B ABC_transporter. Pfam: PF00005%3B ABC_tran%3B 1. This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.%3B~High confidence in function and specificity;gbkey=CDS;gene=mntA2;product=putative manganese transport system ATP-binding protein;protein_id=CAL93833.1;transl_table=11
AM406670.1	EMBL	gene	1309369	1310265	.	+	.	ID=gene1243;Name=mntB2;gbkey=Gene;gene=mntB2;gene_biotype=protein_coding;locus_tag=azo1217
AM406670.1	EMBL	CDS	1309369	1310265	.	+	0	ID=cds1215;Parent=gene1243;Dbxref=EnsemblGenomes-Gn:azo1217,EnsemblGenomes-Tr:CAL93834,GOA:A1K4S9,InterPro:IPR001626,InterPro:IPR001991,InterPro:IPR029022,UniProtKB/TrEMBL:A1K4S9,NCBI_GP:CAL93834.1;Name=CAL93834.1;Note=Part of the ABC transporter complex mntABC involved in manganese import. Probably responsible for the translocation of the substrate across the membrane. 28%25 IPR001626%3B ABC_transpt3. Pfam%3B PF00950%3B ABC-3%3B 1. TmHelix:8 This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.%3B~High confidence in function and specificity;gbkey=CDS;gene=mntB2;product=putative manganese transport system permease protein;protein_id=CAL93834.1;transl_table=11
AM406670.1	EMBL	gene	1310262	1311221	.	+	.	ID=gene1244;Name=mntB3;gbkey=Gene;gene=mntB3;gene_biotype=protein_coding;locus_tag=azo1218
AM406670.1	EMBL	CDS	1310262	1311221	.	+	0	ID=cds1216;Parent=gene1244;Dbxref=EnsemblGenomes-Gn:azo1218,EnsemblGenomes-Tr:CAL93835,GOA:A1K4T0,InterPro:IPR001626,InterPro:IPR029022,UniProtKB/TrEMBL:A1K4T0,NCBI_GP:CAL93835.1;Name=CAL93835.1;Note=Part of the ABC transporter complex mntABC involved in manganese import. Probably responsible for the translocation of the substrate across the membrane. Similar to the permease protein%2C MntB in Synechocystis 6803. 30%25 IPR001626%3B ABC_transpt3. Pfam%3B PF00950%3B ABC-3%3B 1. This operon probably is also involved in other cations uptake like Fe%2CCu and Zn.%3B~High confidence in function and specificity;gbkey=CDS;gene=mntB3;product=putative manganese transport system permease protein;protein_id=CAL93835.1;transl_table=11
AM406670.1	EMBL	gene	1311744	1313414	.	+	.	ID=gene1245;Name=azo1219;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1219
AM406670.1	EMBL	CDS	1311744	1313414	.	+	0	ID=cds1217;Parent=gene1245;Dbxref=EnsemblGenomes-Gn:azo1219,EnsemblGenomes-Tr:CAL93836,GOA:A1K4T1,InterPro:IPR003430,InterPro:IPR009078,InterPro:IPR012348,UniProtKB/TrEMBL:A1K4T1,NCBI_GP:CAL93836.1;Name=CAL93836.1;Note=Conserved hypothetical aromatic/alkene monooxygenase%2C subunit alpha Homology to blr3677 of B. japonicum (trembl|Q89P06(SRS) Bacterial aromatic/alkene monooxygenase is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives (like methane and toulene). InterPro:IPR003430 Pfam: Methane/Phenol/Toluene hydroxylase (PF02332) no signal peptide no TMHs%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical aromatic/alkene monooxygenase%2C subunit alpha;protein_id=CAL93836.1;transl_table=11
AM406670.1	EMBL	gene	1313496	1314539	.	+	.	ID=gene1246;Name=azo1220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1220
AM406670.1	EMBL	CDS	1313496	1314539	.	+	0	ID=cds1218;Parent=gene1246;Dbxref=EnsemblGenomes-Gn:azo1220,EnsemblGenomes-Tr:CAL93837,GOA:A1K4T2,InterPro:IPR001041,InterPro:IPR001221,InterPro:IPR001433,InterPro:IPR001709,InterPro:IPR006058,InterPro:IPR008333,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K4T2,NCBI_GP:CAL93837.1;Name=CAL93837.1;Note=Conserved hypothetical aromatic/alkene monooxygenase%2C subunit gamma. Homology to blr3678 of B. japonicum of 60%25 (trembl|Q89P05(SRS) Bacterial aromatic/alkene monooxygenase is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives (like methane and toulene). Interpro: Phenol hydroxylase reductase family (IPR001221)%3B Oxidoredutase FAD and NAD(P)-binding domain (IPR000134)%3B NADH:cytochrome b5 reductase (CBR) (IPR000134) Pfam: 2Fe-2S iron-sulfur cluster binding domain%3B oxidoreductase FAD-binding domain%3B Oxidoreductase NAD-binding domain no signal peptide no TMHs%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical aromatic/alkene monooxygenase%2C subunit gamma;protein_id=CAL93837.1;transl_table=11
AM406670.1	EMBL	gene	1314604	1315695	.	+	.	ID=gene1247;Name=azo1221;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1221
AM406670.1	EMBL	CDS	1314604	1315695	.	+	0	ID=cds1219;Parent=gene1247;Dbxref=EnsemblGenomes-Gn:azo1221,EnsemblGenomes-Tr:CAL93838,GOA:A1K4T3,InterPro:IPR003430,InterPro:IPR009078,InterPro:IPR012078,InterPro:IPR012348,UniProtKB/TrEMBL:A1K4T3,NCBI_GP:CAL93838.1;Name=CAL93838.1;Note=Conserved hypothetical aromatic/alkene monooxygenase%2C subunit beta Homology to blr3679 of B. japonicum of 53%25 (trembl|Q89P04(SRS) Bacterial aromatic/alkene monooxygenase is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives (like methane and toulene). Interpro: Methane/Penol/Toluene hydroxylase (IPR003430) Pfam: Methane/Penol/Toluene hydroxylase (PF02332) no signal peptide no TMHs%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical aromatic/alkene monooxygenase%2C subunit beta;protein_id=CAL93838.1;transl_table=11
AM406670.1	EMBL	gene	1315744	1316100	.	+	.	ID=gene1248;Name=dmpM;gbkey=Gene;gene=dmpM;gene_biotype=protein_coding;locus_tag=azo1222
AM406670.1	EMBL	CDS	1315744	1316100	.	+	0	ID=cds1220;Parent=gene1248;Dbxref=EnsemblGenomes-Gn:azo1222,EnsemblGenomes-Tr:CAL93839,GOA:A1K4T4,InterPro:IPR003454,UniProtKB/TrEMBL:A1K4T4,NCBI_GP:CAL93839.1;Name=CAL93839.1;Note=Phenol hydroxylase P2 protein (Phenol 2-monooxygenase P2 component)68%25 similarity to SWISSPROT:P19731%2CPseudomonas sp DmpM or Phenol hydroxylase protein component P2%2C this protein lacks redox co-factors and is required for optimal turnover of Phenol hydroxylase . Phenol hydroxylase catabolises phenol and some of its methylated derivatives in the first step of phenol biodegradation%2C and is required for growth on phenol. The multicomponent enzyme is made up of P0%2C P1%2C P2%2C P3%2C P4 and P5 polypeptides. Pfam:PF02406%2C InterPro:IPR003454 91%25 similarity with hypothetical protein Rgel01002820 [Rubrivivax gelatinosus PM1] NO Signal Peptide No TMH's. MmoB/DmpM family%3B~High confidence in function and specificity;gbkey=CDS;gene=dmpM;product=phenol 2-monooxygenase;protein_id=CAL93839.1;transl_table=11
AM406670.1	EMBL	gene	1316323	1317960	.	+	.	ID=gene1249;Name=groEL2;gbkey=Gene;gene=groEL2;gene_biotype=protein_coding;locus_tag=azo1223
AM406670.1	EMBL	CDS	1316323	1317960	.	+	0	ID=cds1221;Parent=gene1249;Dbxref=EnsemblGenomes-Gn:azo1223,EnsemblGenomes-Tr:CAL93840,GOA:A1K4T5,InterPro:IPR001844,InterPro:IPR002423,InterPro:IPR018370,InterPro:IPR027409,InterPro:IPR027410,InterPro:IPR027413,UniProtKB/TrEMBL:A1K4T5,NCBI_GP:CAL93840.1;Name=CAL93840.1;Note=Probable chaperonin GroEL. Homology to groEL of B. japonicum of 43%25 (SWISSPROT:CH61_BRAJA). Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (By similarity). InterPro: TCP-1 (Tailless complex polypeptide)/cpn60 chaperonin family (IPR002423)%3B chaperonin cpn60 (IPR001844) Pfam: TCP-1/cpn 60 chaperonin family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=groEL2;product=probable chaperonin GroEL;protein_id=CAL93840.1;transl_table=11
AM406670.1	EMBL	gene	1318051	1318197	.	+	.	ID=gene1250;Name=azo1224;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1224
AM406670.1	EMBL	CDS	1318051	1318197	.	+	0	ID=cds1222;Parent=gene1250;Dbxref=EnsemblGenomes-Gn:azo1224,EnsemblGenomes-Tr:CAL93841,UniProtKB/TrEMBL:A1K4T6,NCBI_GP:CAL93841.1;Name=CAL93841.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93841.1;transl_table=11
AM406670.1	EMBL	gene	1318385	1320445	.	+	.	ID=gene1251;Name=azo1225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1225
AM406670.1	EMBL	CDS	1318385	1320445	.	+	0	ID=cds1223;Parent=gene1251;Dbxref=EnsemblGenomes-Gn:azo1225,EnsemblGenomes-Tr:CAL93842,GOA:A1K4T7,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003018,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR025662,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4T7,NCBI_GP:CAL93842.1;Name=CAL93842.1;Note=Some bacterial regulatory proteins activate the expression of genes from promoters recognized by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent interaction with sigma-54%2C TREMBL:Q8RM05 (41%25 identity)%3B TREMBL:Q880V5 (32%25 identity). Pfam (PF02954): Bacterial regulatory protein%2CFis family. Pfam (PF00158): Sigma-54 interaction domain. HTH reporting nucleic acid binding motif.%3B~Family membership;gbkey=CDS;product=Sigma-54 dependent transcriptional regulator;protein_id=CAL93842.1;transl_table=11
AM406670.1	EMBL	gene	1320918	1321319	.	+	.	ID=gene1252;Name=lguL;gbkey=Gene;gene=lguL;gene_biotype=protein_coding;locus_tag=azo1226
AM406670.1	EMBL	CDS	1320918	1321319	.	+	0	ID=cds1224;Parent=gene1252;Dbxref=EnsemblGenomes-Gn:azo1226,EnsemblGenomes-Tr:CAL93843,GOA:A1K4T8,InterPro:IPR018146,InterPro:IPR025870,InterPro:IPR029068,UniProtKB/TrEMBL:A1K4T8,NCBI_GP:CAL93843.1;Name=CAL93843.1;Note=Glyoxalase I catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid. Similar to trembl|Q8YEJ0 (61%25)%2C to trembl|Q8DB12 (58%25) and to trembl|Q8UCM7 (52%25). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase%3B~Specificity unclear;gbkey=CDS;gene=lguL;product=lactoylglutathione lyase;protein_id=CAL93843.1;transl_table=11
AM406670.1	EMBL	gene	1321373	1321966	.	+	.	ID=gene1253;Name=azo1227;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1227
AM406670.1	EMBL	CDS	1321373	1321966	.	+	0	ID=cds1225;Parent=gene1253;Dbxref=EnsemblGenomes-Gn:azo1227,EnsemblGenomes-Tr:CAL93844,InterPro:IPR006311,InterPro:IPR019546,InterPro:IPR027056,UniProtKB/TrEMBL:A1K4T9,NCBI_GP:CAL93844.1;Name=CAL93844.1;Note=Conserved hypothetical secreted protein. Homology to blr7490 of B. japonicum of 31%25 (trembl|Q89DE9(SRS)). No domains predicted. No TMHs Signal peptide present%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93844.1;transl_table=11
AM406670.1	EMBL	gene	1321992	1323557	.	+	.	ID=gene1254;Name=gdhAlpha1;gbkey=Gene;gene=gdhAlpha1;gene_biotype=protein_coding;locus_tag=azo1228
AM406670.1	EMBL	CDS	1321992	1323557	.	+	0	ID=cds1226;Parent=gene1254;Dbxref=EnsemblGenomes-Gn:azo1228,EnsemblGenomes-Tr:CAL93845,GOA:A1K4U0,InterPro:IPR000172,InterPro:IPR007867,UniProtKB/TrEMBL:A1K4U0,NCBI_GP:CAL93845.1;Name=CAL93845.1;Note=Putative glucose dehydrogenase alpha subunit. Homology to gdhAlpha of B. cepacia of 29%25 (trembl|Q8GQE7) InterPro: NAD binding site (IPR000205) Pfam: GMC oxidoreductase no signal peptide no TMHs%3B~Function unclear;gbkey=CDS;gene=gdhAlpha1;product=putative glucose dehydrogenase alpha subunit;protein_id=CAL93845.1;transl_table=11
AM406670.1	EMBL	gene	1323688	1324407	.	+	.	ID=gene1255;Name=azo1229;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1229
AM406670.1	EMBL	CDS	1323688	1324407	.	+	0	ID=cds1227;Parent=gene1255;Dbxref=EnsemblGenomes-Gn:azo1229,EnsemblGenomes-Tr:CAL93846,UniProtKB/TrEMBL:A1K4U1,NCBI_GP:CAL93846.1;Name=CAL93846.1;Note=Hypothetical secreted protein. No good homology with hits in the database. Signal peptide present. No TMHs. No domains predicted;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93846.1;transl_table=11
AM406670.1	EMBL	gene	1324442	1324726	.	-	.	ID=gene1256;Name=azo1230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1230
AM406670.1	EMBL	CDS	1324442	1324726	.	-	0	ID=cds1228;Parent=gene1256;Dbxref=EnsemblGenomes-Gn:azo1230,EnsemblGenomes-Tr:CAL93847,InterPro:IPR011846,UniProtKB/TrEMBL:A1K4U2,NCBI_GP:CAL93847.1;Name=CAL93847.1;Note=Conserved hypothetical membrane protein%2C 40%25 identity (49%25 Similarity) to TrEMBL%3BQ6D7F7. Signa P reporting Signal peptide present. TMHMM2 reporting 2 TMH's present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93847.1;transl_table=11
AM406670.1	EMBL	gene	1324874	1326016	.	-	.	ID=gene1257;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=azo1231
AM406670.1	EMBL	CDS	1324874	1326016	.	-	0	ID=cds1229;Parent=gene1257;Dbxref=EnsemblGenomes-Gn:azo1231,EnsemblGenomes-Tr:CAL93848,GOA:A1K4U3,InterPro:IPR003317,UniProtKB/TrEMBL:A1K4U3,NCBI_GP:CAL93848.1;Name=CAL93848.1;Note=Cytochrome D ubiquinol oxidase subunit II (EC 1.10.3.-) (Cytochrome BD-I oxidase subunit II). Cytochrome bd type terminal oxidases catalyse quinol dependent%2C Na+ independent oxygen uptake. Members of this family are integral membrane proteins and contain a protoheame IX center B558. It may play an important role in microaerobic nitrogen fixation. Tigrfam: cydB: cytochrome d ubiquinol oxidase subunit II Pfam: cytochrome oxidase subunit II no signal peptide 8 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=cydB;product=probable cytochrome bd type terminal oxidase%2Csubunit II;protein_id=CAL93848.1;transl_table=11
AM406670.1	EMBL	gene	1326028	1327596	.	-	.	ID=gene1258;Name=cydA;gbkey=Gene;gene=cydA;gene_biotype=protein_coding;locus_tag=azo1232
AM406670.1	EMBL	CDS	1326028	1327596	.	-	0	ID=cds1230;Parent=gene1258;Dbxref=EnsemblGenomes-Gn:azo1232,EnsemblGenomes-Tr:CAL93849,GOA:A1K4U4,InterPro:IPR002585,UniProtKB/TrEMBL:A1K4U4,NCBI_GP:CAL93849.1;Name=CAL93849.1;Note=Probable cytochrome bd type terminal oxidase%2Csubunit I. Homology to cydA of A. vinelandii of 67%25 (sprot|CYDA_AZOVI). Cytochrome bd type terminal oxidases catalyse quinol dependent%2C Na+ independent oxygen uptake. Members of this family are integral membrane proteins and contain a protoheame IX center B558. It may play an important role in microaerobic nitrogen fixation. InterPro: Cytochrome bd ubiquinol oxidase subunit I (IPR002585) Pfam: Bacterial cytochrome ubiquinol oxidase no singal peptide 9 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=cydA;product=probable cytochrome bd type terminal oxidase%2Csubunit I;protein_id=CAL93849.1;transl_table=11
AM406670.1	EMBL	gene	1327586	1327813	.	-	.	ID=gene1259;Name=azo1233;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1233
AM406670.1	EMBL	CDS	1327586	1327813	.	-	0	ID=cds1231;Parent=gene1259;Dbxref=EnsemblGenomes-Gn:azo1233,EnsemblGenomes-Tr:CAL93850,UniProtKB/TrEMBL:A1K4U5,NCBI_GP:CAL93850.1;Name=CAL93850.1;Note=Hypothetical membrane protein. no homology to to the data bank. no domains predicted. no signal peptide. 1 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93850.1;transl_table=11
AM406670.1	EMBL	gene	1327954	1329348	.	+	.	ID=gene1260;Name=azo1234;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1234
AM406670.1	EMBL	CDS	1327954	1329348	.	+	0	ID=cds1232;Parent=gene1260;Dbxref=EnsemblGenomes-Gn:azo1234,EnsemblGenomes-Tr:CAL93851,GOA:A1K4U6,InterPro:IPR000014,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR013656,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4U6,NCBI_GP:CAL93851.1;Name=CAL93851.1;Note=Probable ranscriptional regulator%2C%3B~Specificity unclear;gbkey=CDS;product=probable transcriptional regulator;protein_id=CAL93851.1;transl_table=11
AM406670.1	EMBL	gene	1329607	1330194	.	+	.	ID=gene1261;Name=petA2;gbkey=Gene;gene=petA2;gene_biotype=protein_coding;locus_tag=azo1235
AM406670.1	EMBL	CDS	1329607	1330194	.	+	0	ID=cds1233;Parent=gene1261;Dbxref=EnsemblGenomes-Gn:azo1235,EnsemblGenomes-Tr:CAL93852,GOA:A1K4U7,InterPro:IPR005805,InterPro:IPR006311,InterPro:IPR006317,InterPro:IPR014349,InterPro:IPR017941,InterPro:IPR019470,UniProtKB/TrEMBL:A1K4U7,NCBI_GP:CAL93852.1;Name=CAL93852.1;Note=Ubiquinol-cytochrome C reductase iron-sulfur protein. Homology to petA of R. gelantinosus of 60%25 (trembl|Q93SY7). Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. Pfam: Riedke [2Fe-2S] domain no TMHs signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=petA2;product=probable ubiquinol-cytochrome C reductase iron-sulfur protein;protein_id=CAL93852.1;transl_table=11
AM406670.1	EMBL	gene	1330265	1332022	.	+	.	ID=gene1262;Name=azo1236;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1236
AM406670.1	EMBL	CDS	1330265	1332022	.	+	0	ID=cds1234;Parent=gene1262;Dbxref=EnsemblGenomes-Gn:azo1236,EnsemblGenomes-Tr:CAL93853,GOA:A1K4U8,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4U8,NCBI_GP:CAL93853.1;Name=CAL93853.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Similar to TREMBL:Q88H94 (52%25 identity)%3B TREMBL:Q9RXZ1 (29%25 identity)%3B SWISSPROT:Q9WYC4 (25%25 identity). Pfam (PF00664): ABC transporter transmembrane region. Pfam (PF00005): ABC transporter. TMHMM reporting six transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Family membership;gbkey=CDS;product=ABC transporter permease and ATP-binding protein;protein_id=CAL93853.1;transl_table=11
AM406670.1	EMBL	gene	1332019	1332723	.	+	.	ID=gene1263;Name=subC;gbkey=Gene;gene=subC;gene_biotype=protein_coding;locus_tag=azo1237
AM406670.1	EMBL	CDS	1332019	1332723	.	+	0	ID=cds1235;Parent=gene1263;Dbxref=EnsemblGenomes-Gn:azo1237,EnsemblGenomes-Tr:CAL93854,GOA:A1K4U9,InterPro:IPR000209,UniProtKB/TrEMBL:A1K4U9,NCBI_GP:CAL93854.1;Name=CAL93854.1;Note=Subtilisin Savinase precursor%2C 36%25 identity to SwissProt%3B P29600. Has PF00082%2C Subtilase family%3BIPR000209%2C Pept_S8_S53%3BSubtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad%2C like that found in the trypsin serine proteases (see Trypsin). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet%2C order 2314567. PROSITE%3B) PS00136%3B SUBTILASE_ASP%3B 1. PS00137%3B SUBTILASE_HIS%3B 1. PS00138%3B SUBTILASE_SER%3B 1.;gbkey=CDS;gene=subC;product=Subtilisin;protein_id=CAL93854.1;transl_table=11
AM406670.1	EMBL	gene	1332713	1334038	.	+	.	ID=gene1264;Name=azo1238;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1238
AM406670.1	EMBL	CDS	1332713	1334038	.	+	0	ID=cds1236;Parent=gene1264;Dbxref=EnsemblGenomes-Gn:azo1238,EnsemblGenomes-Tr:CAL93855,GOA:A1K4V0,InterPro:IPR003042,InterPro:IPR006905,UniProtKB/TrEMBL:A1K4V0,NCBI_GP:CAL93855.1;Name=CAL93855.1;Note=Conserved hypothetical secreted protein. Homology to ebA2217 of Azoarcus sp. EbN1 of 32%25 (gnl|keqq|eba:ebA2217(KEGG)). C-terminus is not homolog to COG0644. signal peptide present. no TMHS.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93855.1;transl_table=11
AM406670.1	EMBL	gene	1334490	1336076	.	+	.	ID=gene1265;Name=qhpA;gbkey=Gene;gene=qhpA;gene_biotype=protein_coding;locus_tag=azo1239
AM406670.1	EMBL	CDS	1334490	1336076	.	+	0	ID=cds1237;Parent=gene1265;Dbxref=EnsemblGenomes-Gn:azo1239,EnsemblGenomes-Tr:CAL93856,GOA:A1K4V1,InterPro:IPR009056,InterPro:IPR009111,InterPro:IPR013783,InterPro:IPR014756,InterPro:IPR015182,InterPro:IPR015183,InterPro:IPR015184,InterPro:IPR023887,UniProtKB/TrEMBL:A1K4V1,NCBI_GP:CAL93856.1;Name=CAL93856.1;Note=Probable quinohemoprotein amine dehydrogenase%2Calpha subunit. Homology to qhpA of P.putida of 50%25 (gi|18655859|pdb|1JMZ|A(PDB (RCSB))). Quinoproteins are a class of amine-oxidising enzymes that catalyse the oxidation of biological amines%2C using quinone as a redox cofactor to store reducing equivalents. Quinohemoprotein amine dehydrogenase (QH-AmDH) from bacteria represents a new class of quinoproteins that contains both quinone and one or two hemes as redox active groups. The presence of extra redox active groups allows for intramolecular electron transfer. QH-AmDH is a heterotrimeric enzyme containing alpha%2C beta and gamma chains encoded by separate genes. The alpha chain makes contact with both the beta and gamma chains. The small gamma chain forms three intra-chain cross-links via thioester bonds between cysteine and aspartic or glutamic acid residues%2C thereby encaging the cysteine tryptophylquinone cofactor. The largest chain%2C alpha%2C contains two heme c groups. The alpha chain is folded into four domains%2C domain 1 forming a diheme cytochrome. Domains 2%2C 3 and 4 are antiparallel beta-barrel structures. Has PF00034%2C Cytochromes c (cytC). Interpro (IPR009111) Quinohemoprotein amine dehydrogenase%2C alpha chain%2C domain 3. Signal peptide present. No TMHs.%3B~High confidence in function and specificity;gbkey=CDS;gene=qhpA;product=probable quinohemoprotein amine dehydrogenase%2Calpha subunit;protein_id=CAL93856.1;transl_table=11
AM406670.1	EMBL	gene	1336144	1337574	.	+	.	ID=gene1266;Name=qhpX;gbkey=Gene;gene=qhpX;gene_biotype=protein_coding;locus_tag=azo1240
AM406670.1	EMBL	CDS	1336144	1337574	.	+	0	ID=cds1238;Parent=gene1266;Dbxref=EnsemblGenomes-Gn:azo1240,EnsemblGenomes-Tr:CAL93857,GOA:A1K4V2,InterPro:IPR000385,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR023885,InterPro:IPR023886,UniProtKB/TrEMBL:A1K4V2,NCBI_GP:CAL93857.1;Name=CAL93857.1;Note=Conserved hypothetical qinohemoprotein amine dehydrogenase%2C unknown subunit. Homology to P. putida of 71%25 (gi|16950513|dbj|BAB72009.1|(NBCI ENTREZ)). InterPro:IPR000385%3B MoaA_NifB_PqqE. IPR007197%3B Radical_SAM. Pfam:PF04055%3B Radical_SAM. No signal peptide. No TMHs%3B~Family membership;gbkey=CDS;gene=qhpX;product=conserved hypothetical qinohemoprotein amine dehydrogenase%2C unknown subunit;protein_id=CAL93857.1;transl_table=11
AM406670.1	EMBL	gene	1337576	1337902	.	+	.	ID=gene1267;Name=qhpC;gbkey=Gene;gene=qhpC;gene_biotype=protein_coding;locus_tag=azo1241
AM406670.1	EMBL	CDS	1337576	1337902	.	+	0	ID=cds1239;Parent=gene1267;Dbxref=EnsemblGenomes-Gn:azo1241,EnsemblGenomes-Tr:CAL93858,GOA:A1K4V3,InterPro:IPR015084,UniProtKB/TrEMBL:A1K4V3,NCBI_GP:CAL93858.1;Name=CAL93858.1;Note=Probable quinohemoprotein amine dehydrogenase%2Cgamma subunit. Homology to qhnDH of P. putida of 54%25 (sprot|QADG_PSEPK(SRS). Quinoproteins are a class of amine-oxidising enzymes that catalyse the oxidation of biological amines%2C using quinone as a redox cofactor to store reducing equivalents. Quinohemoprotein amine dehydrogenase (QH-AmDH) from bacteria represents a new class of quinoproteins that contains both quinone and one or two hemes as redox active groups. The presence of extra redox active groups allows for intramolecular electron transfer. QH-AmDH is a heterotrimeric enzyme containing alpha%2C beta and gamma chains encoded by separate genes. The alpha chain makes contact with both the beta and gamma chains. The small gamma chain forms three intra-chain cross-links via thioester bonds between cysteine and aspartic or glutamic acid residues%2C thereby encaging the cysteine tryptophylquinone cofactor. The largest chain%2Calpha%2C contains two heme c groups. The alpha chain is folded into four domains%2C domain 1 forming a diheme cytochrome. Domains 2%2C 3 and 4 are antiparallel beta-barrel structures. no domains predicted. no signal peptide. no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=qhpC;product=probable quinohemoprotein amine dehydrogenase%2Cgamma subunit;protein_id=CAL93858.1;transl_table=11
AM406670.1	EMBL	gene	1337920	1339065	.	+	.	ID=gene1268;Name=qhpB;gbkey=Gene;gene=qhpB;gene_biotype=protein_coding;locus_tag=azo1242
AM406670.1	EMBL	CDS	1337920	1339065	.	+	0	ID=cds1240;Parent=gene1268;Dbxref=EnsemblGenomes-Gn:azo1242,EnsemblGenomes-Tr:CAL93859,InterPro:IPR011044,InterPro:IPR015943,InterPro:IPR023879,UniProtKB/TrEMBL:A1K4V4,NCBI_GP:CAL93859.1;Name=CAL93859.1;Note=Probable quinohemoprotein amine dehydrogenase%2Calpha subunit. Homology to qhpB of P.putida of 50%25 (gi|34809688|pdb|1PBY|B(PDB (RCSB))). Quinoproteins are a class of amine-oxidising enzymes that catalyse the oxidation of biological amines%2C using quinone as a redox cofactor to store reducing equivalents. Quinohemoprotein amine dehydrogenase (QH-AmDH) from bacteria represents a new class of quinoproteins that contains both quinone and one or two hemes as redox active groups. The presence of extra redox active groups allows for intramolecular electron transfer. QH-AmDH is a heterotrimeric enzyme containing alpha%2C beta and gamma chains encoded by separate genes. The alpha chain makes contact with both the beta and gamma chains. The small gamma chain forms three intra-chain cross-links via thioester bonds between cysteine and aspartic or glutamic acid residues%2C thereby encaging the cysteine tryptophylquinone cofactor. The largest chain%2C alpha%2C contains two heme c groups. The alpha chain is folded into four domains%2C domain 1 forming a diheme cytochrome. Domains 2%2C 3 and 4 are antiparallel beta-barrel structures. Interpro (IPR0011044) Quinoprotein amine dehydrogenase%2C beta chain-like. Signal peptide present. No TMHs.%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=qhpB;product=probable quinohemoprotein amine dehydrogease%2Cbeta subunit;protein_id=CAL93859.1;transl_table=11
AM406670.1	EMBL	gene	1339138	1340523	.	-	.	ID=gene1269;Name=azo1243;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1243
AM406670.1	EMBL	CDS	1339138	1340523	.	-	0	ID=cds1241;Parent=gene1269;Dbxref=EnsemblGenomes-Gn:azo1243,EnsemblGenomes-Tr:CAL93860,GOA:A1K4V5,InterPro:IPR002508,InterPro:IPR006311,InterPro:IPR021731,UniProtKB/TrEMBL:A1K4V5,NCBI_GP:CAL93860.1;Name=CAL93860.1;Note=Conserved hypothetical N-acetylmuramoyl-L-alanine amidase. Homology to amiC of R. solanaceraum of 50%25 (trembl|Q8XWD5) CELL-WALL HYDROLASE PROBABLY INVOLVED IN CELL-WALL HYDROLYSIS SEPTATION OR RECYCLING (BY SIMILARITY). Pfam: N-acetylmuramoyl-L-alanine amidase no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical N-acetylmuramoyl-L-alanine amidase;protein_id=CAL93860.1;transl_table=11
AM406670.1	EMBL	gene	1340466	1340987	.	-	.	ID=gene1270;Name=azo1244;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1244
AM406670.1	EMBL	CDS	1340466	1340987	.	-	0	ID=cds1242;Parent=gene1270;Dbxref=EnsemblGenomes-Gn:azo1244,EnsemblGenomes-Tr:CAL93861,GOA:A1K4V6,InterPro:IPR003442,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4V6,NCBI_GP:CAL93861.1;Name=CAL93861.1;Note=Conserved hypothetical protein having uncharacterised P-loop hydrolase%2C 47%25 Identity to TrEMBL%3BQ82WL4%2CQ63WN1. Has PF02367%2C Uncharacterised P-loop hydrolase UPF0079%3BIPR003442%3B This signature is found in a family of bacterial proteins%2C which contain a P-loop.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93861.1;transl_table=11
AM406670.1	EMBL	gene	1341000	1342058	.	+	.	ID=gene1271;Name=azo1245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1245
AM406670.1	EMBL	CDS	1341000	1342058	.	+	0	ID=cds1243;Parent=gene1271;Dbxref=EnsemblGenomes-Gn:azo1245,EnsemblGenomes-Tr:CAL93862,GOA:A1K4V7,InterPro:IPR004453,InterPro:IPR013542,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K4V7,NCBI_GP:CAL93862.1;Name=CAL93862.1;Note=Conserved hypothetical electron transport protein. Homology to pa4950 of P. aeruginosa of 63%25 (trembl|Q9HUL4). Pfam: 4Fe-4S- binding domain Tigrfam: TIG00276: iron-sulfur cluster binding protein%2C putative no TMHs no signal peptide TIGR00276: iron-sulfur cluster binding pr%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical electron transport protein;protein_id=CAL93862.1;transl_table=11
AM406670.1	EMBL	gene	1342145	1343311	.	-	.	ID=gene1272;Name=azo1246;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1246
AM406670.1	EMBL	CDS	1342145	1343311	.	-	0	ID=cds1244;Parent=gene1272;Dbxref=EnsemblGenomes-Gn:azo1246,EnsemblGenomes-Tr:CAL93863,GOA:A1K4V8,InterPro:IPR001354,InterPro:IPR013341,InterPro:IPR013342,InterPro:IPR029017,InterPro:IPR029065,UniProtKB/TrEMBL:A1K4V8,NCBI_GP:CAL93863.1;Name=CAL93863.1;Note=Conserved hypothetical mandelate racemase. Homology to bll6730 of B. japonicum of 76%25 (trembl|Q89FH0) Mandelate racemase and muconate lactonizing enzyme are two bacterial enzymes involved in aromatic acid catabolism. They catalyze mechanistically distinct reactions yet they are related at the level of their primary%2C quaternary (homooctamer) and tertiary structures. InterPro: Mandelate racemase/muconate lactonizing enzyme family (IPR001354) Pfam: Mandelate racemase/muconate lactonizing enzyme%2C N-terminal domain%3B Mandelate racemase/muconate lactonizing enzyme%2C C-terminal domain%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical mandelate racemase;protein_id=CAL93863.1;transl_table=11
AM406670.1	EMBL	gene	1343604	1344530	.	+	.	ID=gene1273;Name=azo1247;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1247
AM406670.1	EMBL	CDS	1343604	1344530	.	+	0	ID=cds1245;Parent=gene1273;Dbxref=EnsemblGenomes-Gn:azo1247,EnsemblGenomes-Tr:CAL93864,GOA:A1K4V9,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K4V9,NCBI_GP:CAL93864.1;Name=CAL93864.1;Note=Transcriptional regulator%2C LysR family This protein activates the transcription of the lysA gene encoding diaminopimelate decarboxylase. LysR is also a negative regulator of its own expression. 29%25 1 helixturnhelix PF03466 LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~Specificity unclear;gbkey=CDS;product=putative transcriptional regulator%2C LysR family;protein_id=CAL93864.1;transl_table=11
AM406670.1	EMBL	gene	1344671	1345414	.	+	.	ID=gene1274;Name=nifY2;gbkey=Gene;gene=nifY2;gene_biotype=protein_coding;locus_tag=azo1248
AM406670.1	EMBL	CDS	1344671	1345414	.	+	0	ID=cds1246;Parent=gene1274;Dbxref=EnsemblGenomes-Gn:azo1248,EnsemblGenomes-Tr:CAL93865,InterPro:IPR003731,UniProtKB/TrEMBL:A1K4W0,NCBI_GP:CAL93865.1;Name=CAL93865.1;Note=NifY-like protein. Homology to Daro03003760 of Dechloromonas aromatica of 65%25 (gi|46140358|ref|ZP_00203574.1|(NBCI ENTREZ)). Pfam: Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B%2C Y and X) proteins which are involved in the synthesis of an iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyses the reduction of dinitrogen to ammonium. No signal peptide predicted. No TMHs.%3B~Family membership;gbkey=CDS;gene=nifY2;product=NifY protein;protein_id=CAL93865.1;transl_table=11
AM406670.1	EMBL	gene	1345528	1345794	.	+	.	ID=gene1275;Name=azo1249;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1249
AM406670.1	EMBL	CDS	1345528	1345794	.	+	0	ID=cds1247;Parent=gene1275;Dbxref=EnsemblGenomes-Gn:azo1249,EnsemblGenomes-Tr:CAL93866,UniProtKB/TrEMBL:A1K4W1,NCBI_GP:CAL93866.1;Name=CAL93866.1;Note=Hypothetical protein predicted by Glimmer/Critica. No homology to the data bank. No domains predicted. No signal peptide No TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL93866.1;transl_table=11
AM406670.1	EMBL	gene	1345875	1346084	.	+	.	ID=gene1276;Name=azo1250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1250
AM406670.1	EMBL	CDS	1345875	1346084	.	+	0	ID=cds1248;Parent=gene1276;Dbxref=EnsemblGenomes-Gn:azo1250,EnsemblGenomes-Tr:CAL93867,InterPro:IPR007236,UniProtKB/TrEMBL:A1K4W2,NCBI_GP:CAL93867.1;Name=CAL93867.1;Note=Conserved Hypotheitcal protein. Very strong consideration to be a homolog for SlyX protein. TrEMBL: Q7WMX4%2C 32%25 identity. Has PF04102|SlyX%3B(IPR007236):The SlyX protein has no known function. It is short less than 80 amino acids and is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C-terminus. The protein may be a coiled-coil structure. No Signal peptide present. No TMH present.%3B~Family membership;gbkey=CDS;product=Conserved Hypotheitcal protein;protein_id=CAL93867.1;transl_table=11
AM406670.1	EMBL	gene	1346107	1348047	.	-	.	ID=gene1277;Name=azo1251;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1251
AM406670.1	EMBL	CDS	1346107	1348047	.	-	0	ID=cds1249;Parent=gene1277;Dbxref=EnsemblGenomes-Gn:azo1251,EnsemblGenomes-Tr:CAL93868,GOA:A1K4W3,InterPro:IPR001539,InterPro:IPR020988,UniProtKB/TrEMBL:A1K4W3,NCBI_GP:CAL93868.1;Name=CAL93868.1;Note=Conserved hypothetical peptidase. Homology to cv0266 of C. violaceum of 58%25 (cvi:CV0266). InterPro: Peptidase family U32 Pfam: Peptidase family U32 no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical peptidase;protein_id=CAL93868.1;transl_table=11
AM406670.1	EMBL	gene	1348202	1348510	.	-	.	ID=gene1278;Name=azo1252;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1252
AM406670.1	EMBL	CDS	1348202	1348510	.	-	0	ID=cds1250;Parent=gene1278;Dbxref=EnsemblGenomes-Gn:azo1252,EnsemblGenomes-Tr:CAL93869,InterPro:IPR006976,UniProtKB/TrEMBL:A1K4W4,NCBI_GP:CAL93869.1;Name=CAL93869.1;Note=Conserved hypothetical membrane protein. Homology to XCC3430 of Xanthomonas campestris of 38%25 (trembl:Q8P5B1). Has PF04892%2C VanZ like family%3BIPR006976 %3B This family contains several examples of the VanZ protein%2Cbut also contains examples of phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors%2C accumulated in the presence of ramoplanin%2C showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors. no signal peptide. 2 TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93869.1;transl_table=11
AM406670.1	EMBL	gene	1348736	1349905	.	+	.	ID=gene1279;Name=azo1253;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1253
AM406670.1	EMBL	CDS	1348736	1349905	.	+	0	ID=cds1251;Parent=gene1279;Dbxref=EnsemblGenomes-Gn:azo1253,EnsemblGenomes-Tr:CAL93870,GOA:A1K4W5,InterPro:IPR011041,InterPro:IPR011042,InterPro:IPR012938,UniProtKB/TrEMBL:A1K4W5,NCBI_GP:CAL93870.1;Name=CAL93870.1;Note=Similar to the GdhB protein%2C a putative glucose dehydrogenase-B%2C periplasmic protein [EC:1.1.5.2]%2C from Synechocystis. SPTR: P73001. Signal peptide:present;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93870.1;transl_table=11
AM406670.1	EMBL	gene	1349902	1351638	.	-	.	ID=gene1280;Name=azo1254;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1254
AM406670.1	EMBL	CDS	1349902	1351638	.	-	0	ID=cds1252;Parent=gene1280;Dbxref=EnsemblGenomes-Gn:azo1254,EnsemblGenomes-Tr:CAL93871,GOA:A1K4W6,InterPro:IPR000160,InterPro:IPR003660,InterPro:IPR029151,InterPro:IPR029787,UniProtKB/TrEMBL:A1K4W6,NCBI_GP:CAL93871.1;Name=CAL93871.1;Note=Conserved hypothetical signaling protein. Homology to Bcep02001865 of Burkholderia fungorum of 44%25 (gi|48787085|ref|ZP_00283167.1|(NBCI ENTREZ)). InterPro: IPR003660 HAMP. IPR000160 GGDEF. Pfam: PF00672 HAMP. PF00990 GGDEF domain. TIGRFAM:TIGR00254 putative diguanylate cyclase (GGDEF) domain. Signal P reporting signal peptide. TMHMM reporting 1 transmembrane helices (in signal peptide).%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical signaling protein;protein_id=CAL93871.1;transl_table=11
AM406670.1	EMBL	gene	1351635	1352795	.	-	.	ID=gene1281;Name=potD;gbkey=Gene;gene=potD;gene_biotype=protein_coding;locus_tag=azo1255
AM406670.1	EMBL	CDS	1351635	1352795	.	-	0	ID=cds1253;Parent=gene1281;Dbxref=EnsemblGenomes-Gn:azo1255,EnsemblGenomes-Tr:CAL93872,GOA:A1K4W7,InterPro:IPR001188,UniProtKB/TrEMBL:A1K4W7,NCBI_GP:CAL93872.1;Name=CAL93872.1;Note=Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. Similar to trembl|Q986V8 (37%25). Pfam (PF01547): Bacterial extracellular solute-binding protein%3B~Family membership;gbkey=CDS;gene=potD;product=bacterial extracellular solute-binding protein;protein_id=CAL93872.1;transl_table=11
AM406670.1	EMBL	gene	1352950	1355322	.	+	.	ID=gene1282;Name=azo1256;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1256
AM406670.1	EMBL	CDS	1352950	1355322	.	+	0	ID=cds1254;Parent=gene1282;Dbxref=EnsemblGenomes-Gn:azo1256,EnsemblGenomes-Tr:CAL93873,GOA:A1K4W8,InterPro:IPR000719,InterPro:IPR003018,InterPro:IPR008271,InterPro:IPR011009,InterPro:IPR013976,InterPro:IPR029016,UniProtKB/TrEMBL:A1K4W8,NCBI_GP:CAL93873.1;Name=CAL93873.1;Note=Putative serin/threonine protein kinase%2C only very low similarity to SWISSPROT: sprot|PKSC_STRCO (13%25 Streptomyces coelicolor%2C serine/threonine protein kinase PksC (EC 2.7.11.1)) / TREMBL: trembl|Q9S478 (13%25 Myxococcus xanthus%2C Pkn4). Pfam: PF00069 Pkinase. SMART:SM00221 STYKc (Protein kinase%3B unclassified specificity). SM00065 GAF (Domain present in phytochromes and cGMP-specific phosphodiesterases).%3B~Family membership;gbkey=CDS;product=putative serine/threonine protein kinase;protein_id=CAL93873.1;transl_table=11
AM406670.1	EMBL	gene	1355479	1356123	.	+	.	ID=gene1283;Name=azo1257;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1257
AM406670.1	EMBL	CDS	1355479	1356123	.	+	0	ID=cds1255;Parent=gene1283;Dbxref=EnsemblGenomes-Gn:azo1257,EnsemblGenomes-Tr:CAL93874,UniProtKB/TrEMBL:A1K4W9,NCBI_GP:CAL93874.1;Name=CAL93874.1;Note=Conserved hypothetical protein. Homology to CV1784 of C.violaceum of 40%25 (tremble:Q7NX45). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93874.1;transl_table=11
AM406670.1	EMBL	gene	1356239	1358347	.	+	.	ID=gene1284;Name=azo1258;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1258
AM406670.1	EMBL	CDS	1356239	1358347	.	+	0	ID=cds1256;Parent=gene1284;Dbxref=EnsemblGenomes-Gn:azo1258,EnsemblGenomes-Tr:CAL93875,GOA:A1K4X0,InterPro:IPR001096,UniProtKB/TrEMBL:A1K4X0,NCBI_GP:CAL93875.1;Name=CAL93875.1;Note=hypothetical membrane protein no homology to entire proteins seven transmembrane domains predicted%2C no signal peptide predicted%3B~Family membership;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93875.1;transl_table=11
AM406670.1	EMBL	gene	1358370	1359830	.	+	.	ID=gene1285;Name=pepD;gbkey=Gene;gene=pepD;gene_biotype=protein_coding;locus_tag=azo1259
AM406670.1	EMBL	CDS	1358370	1359830	.	+	0	ID=cds1257;Parent=gene1285;Dbxref=EnsemblGenomes-Gn:azo1259,EnsemblGenomes-Tr:CAL93876,GOA:A1K4X1,InterPro:IPR001160,InterPro:IPR002933,InterPro:IPR011650,UniProtKB/TrEMBL:A1K4X1,NCBI_GP:CAL93876.1;Name=CAL93876.1;Note=Probable aminoacyl-histidine dipeptidase (EC 3.4.13.3) (Xaa-His dipeptidase) (X-His dipeptidase) (Beta-alanyl-histidine dipeptidase) (Carnosinase) (Peptidase D). Homology to pepD of E. coli of 44%25. THIS DIPEPTIDASE HAS SPECIFICITY FOR THE UNUSUAL DIPEPTIDE BETA-ALANYL-L-HISTIDINE. InterPro: Peptidase family M20/M25/M40 (IPR002933) Pfam: Peptidase family M20/M25/M40 no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=pepD;product=probable aminoacyl-histidine dipeptidase;protein_id=CAL93876.1;transl_table=11
AM406670.1	EMBL	gene	1359827	1360354	.	-	.	ID=gene1286;Name=azo1260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1260
AM406670.1	EMBL	CDS	1359827	1360354	.	-	0	ID=cds1258;Parent=gene1286;Dbxref=EnsemblGenomes-Gn:azo1260,EnsemblGenomes-Tr:CAL93877,InterPro:IPR007621,UniProtKB/TrEMBL:A1K4X2,NCBI_GP:CAL93877.1;Name=CAL93877.1;Note=Conserved hypothetical protein. Homology to RPA1575 of R.palustris of 41%25 (tremble:Q6N9H4). Has PF04536:(IPR007621)Domain of unknown function (DUF477)%3BThis is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93877.1;transl_table=11
AM406670.1	EMBL	gene	1360403	1361335	.	-	.	ID=gene1287;Name=azo1261;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1261
AM406670.1	EMBL	CDS	1360403	1361335	.	-	0	ID=cds1259;Parent=gene1287;Dbxref=EnsemblGenomes-Gn:azo1261,EnsemblGenomes-Tr:CAL93878,InterPro:IPR007621,UniProtKB/TrEMBL:A1K4X3,NCBI_GP:CAL93878.1;Name=CAL93878.1;Note=Conserved hypothetical membrane protein. Homology to Bll7266 of B. japonicum of 45%25 (trembel:Q89E21) InterPro:IPR007621%3B DUF477. Pfam:PF04536%3B DUF477 Signal peptide present (Signal P predicted). Presence of 2 transmembrane helices.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93878.1;transl_table=11
AM406670.1	EMBL	gene	1361353	1361979	.	-	.	ID=gene1288;Name=lemA1;gbkey=Gene;gene=lemA1;gene_biotype=protein_coding;locus_tag=azo1262
AM406670.1	EMBL	CDS	1361353	1361979	.	-	0	ID=cds1260;Parent=gene1288;Dbxref=EnsemblGenomes-Gn:azo1262,EnsemblGenomes-Tr:CAL93879,InterPro:IPR007156,InterPro:IPR023353,UniProtKB/TrEMBL:A1K4X4,NCBI_GP:CAL93879.1;Name=CAL93879.1;Note=Putative lipoprotein [lemA]%2C57 %25 identity (75%25 similarity) to TrEMBL%3BQ72TG3%2CTrEMBL%3BQ6N9H6(60%25 identity). No signl peptide or TMH present. Has PF04011:LemA family(IPR007156%2ClemA)%3BThe members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular [1]. The exact molecular function of this protein is uncertain.%3B~Conserved hypothetical protein;gbkey=CDS;gene=lemA1;product=conserved hypothetical LemA family protein;protein_id=CAL93879.1;transl_table=11
AM406670.1	EMBL	gene	1362162	1362374	.	+	.	ID=gene1289;Name=azo1263;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1263
AM406670.1	EMBL	CDS	1362162	1362374	.	+	0	ID=cds1261;Parent=gene1289;Dbxref=EnsemblGenomes-Gn:azo1263,EnsemblGenomes-Tr:CAL93880,InterPro:IPR009923,InterPro:IPR025543,UniProtKB/TrEMBL:A1K4X5,NCBI_GP:CAL93880.1;Name=CAL93880.1;Note=Conserved yhpothetical protein. Homology to BP1565 of B.pertussis of 66%25 (tremble:Q7VY02) Has PF07311:Protein of unknown function (DUF1458)(IPR009923 )%3BThis family consists of several hypothetical bacterial proteins as well as one archaeal sequence Q9HPW4. Members of this family are typically of around 70 residues in length. The function of this family is unknown. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93880.1;transl_table=11
AM406670.1	EMBL	gene	1362410	1363681	.	+	.	ID=gene1290;Name=azo1264;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1264
AM406670.1	EMBL	CDS	1362410	1363681	.	+	0	ID=cds1262;Parent=gene1290;Dbxref=EnsemblGenomes-Gn:azo1264,EnsemblGenomes-Tr:CAL93881,GOA:A1K4X6,InterPro:IPR000157,InterPro:IPR004043,UniProtKB/TrEMBL:A1K4X6,NCBI_GP:CAL93881.1;Name=CAL93881.1;Note=Putative transmembrane sensor protein%2C no similarity to other bacterial proteins. Best hits to mus musculus and homo sapiens. Domains (LCCL_dom and TIR) are found in proteins (animal and plants) involved in protection against bacterial infection. InterPro: IPR004043 LCCL_dom. IPR000157 TIR. TMHMM reporting 1 transmembrane helices.;gbkey=CDS;product=putative transmembrane sensor protein;protein_id=CAL93881.1;transl_table=11
AM406670.1	EMBL	gene	1363688	1363981	.	-	.	ID=gene1291;Name=azo1265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1265
AM406670.1	EMBL	CDS	1363688	1363981	.	-	0	ID=cds1263;Parent=gene1291;Dbxref=EnsemblGenomes-Gn:azo1265,EnsemblGenomes-Tr:CAL93882,UniProtKB/TrEMBL:A1K4X7,NCBI_GP:CAL93882.1;Name=CAL93882.1;Note=Hypothetical protein%2C 26%25 identity(49%25 similarity) to TrEMBL%3BQ8XT66. TrEMBL%3BQ7P1L8(34%25 identity). No domains%2Crepeats%2C motifs or features present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL93882.1;transl_table=11
AM406670.1	EMBL	gene	1364049	1365062	.	-	.	ID=gene1292;Name=dnaJ2;gbkey=Gene;gene=dnaJ2;gene_biotype=protein_coding;locus_tag=azo1266
AM406670.1	EMBL	CDS	1364049	1365062	.	-	0	ID=cds1264;Parent=gene1292;Dbxref=EnsemblGenomes-Gn:azo1266,EnsemblGenomes-Tr:CAL93883,GOA:A1K4X8,InterPro:IPR001305,InterPro:IPR001623,InterPro:IPR008971,UniProtKB/TrEMBL:A1K4X8,NCBI_GP:CAL93883.1;Name=CAL93883.1;Note=Putative chaperone protein dnaJ. homology to dnaJ of E. coli of 32%25 (sprot|DNAJ_ECOLI) Acts as a co-chaperone. Stimulates jointly with grpE the ATPase activity of dnaK (By similarity). Pfam: DnaJ domain%2C DnaJ central domain (4 repeats)%2C DnaJ Cterminal region no singal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=dnaJ2;product=putative chaperone protein DnaJ;protein_id=CAL93883.1;transl_table=11
AM406670.1	EMBL	gene	1365220	1365705	.	+	.	ID=gene1293;Name=azo1267;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1267
AM406670.1	EMBL	CDS	1365220	1365705	.	+	0	ID=cds1265;Parent=gene1293;Dbxref=EnsemblGenomes-Gn:azo1267,EnsemblGenomes-Tr:CAL93884,GOA:A1K4X9,InterPro:IPR006683,InterPro:IPR029069,UniProtKB/TrEMBL:A1K4X9,NCBI_GP:CAL93884.1;Name=CAL93884.1;Note=Entry name TREMBL:Q7W380 Prim. accession # Q7W380 Identities %3D 111/150 (74%25) InterPro IPR006683%3B Thioestr_supf. Pfam PF03061%3B 4HBT%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.179 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;product=probable acyl-CoA thioester hydrolase;protein_id=CAL93884.1;transl_table=11
AM406670.1	EMBL	gene	1365702	1365947	.	+	.	ID=gene1294;Name=azo1268;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1268
AM406670.1	EMBL	CDS	1365702	1365947	.	+	0	ID=cds1266;Parent=gene1294;Dbxref=EnsemblGenomes-Gn:azo1268,EnsemblGenomes-Tr:CAL93885,GOA:A1K4Y0,InterPro:IPR003034,InterPro:IPR018668,UniProtKB/TrEMBL:A1K4Y0,NCBI_GP:CAL93885.1;Name=CAL93885.1;Note=Conserved hypothetical protein. Homology to PBPRB0126 of Photobacterium profundum of 54%25 (trembl:Q6LL06). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93885.1;transl_table=11
AM406670.1	EMBL	gene	1365959	1367140	.	-	.	ID=gene1295;Name=purT;gbkey=Gene;gene=purT;gene_biotype=protein_coding;locus_tag=azo1269
AM406670.1	EMBL	CDS	1365959	1367140	.	-	0	ID=cds1267;Parent=gene1295;Dbxref=EnsemblGenomes-Gn:azo1269,EnsemblGenomes-Tr:CAL93886,GOA:A1K4Y1,InterPro:IPR003135,InterPro:IPR005862,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,NCBI_GP:CAL93886.1;Name=CAL93886.1;Note=Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) (GART 2) (GAR transformylase 2) (5'-phosphoribosylglycinamide transformylase 2) (Formate-dependent GAR transformylase)%3B~High confidence in function and specificity;gbkey=CDS;gene=purT;product=phosphoribosylglycinamide formyltransferase 2;protein_id=CAL93886.1;transl_table=11
AM406670.1	EMBL	gene	1367335	1368981	.	+	.	ID=gene1296;Name=azo1270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1270
AM406670.1	EMBL	CDS	1367335	1368981	.	+	0	ID=cds1268;Parent=gene1296;Dbxref=EnsemblGenomes-Gn:azo1270,EnsemblGenomes-Tr:CAL93887,InterPro:IPR005646,UniProtKB/TrEMBL:A1K4Y2,NCBI_GP:CAL93887.1;Name=CAL93887.1;Note=Probable Branched-chain amino acid aminotransferase (EC 2.6.1.42) (Transaminase B) (BCAT). thrC: threonine synthase.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93887.1;transl_table=11
AM406670.1	EMBL	gene	1368995	1369639	.	-	.	ID=gene1297;Name=azo1271;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1271
AM406670.1	EMBL	CDS	1368995	1369639	.	-	0	ID=cds1269;Parent=gene1297;Dbxref=EnsemblGenomes-Gn:azo1271,EnsemblGenomes-Tr:CAL93888,InterPro:IPR005586,UniProtKB/TrEMBL:A1K4Y3,NCBI_GP:CAL93888.1;Name=CAL93888.1;Note=Conserved hypothetical secreted protein. Homology to pa3214 of P. aeruginosa of 52%25 (trembl|Q9HZ26). Pfam: DUF330 signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93888.1;transl_table=11
AM406670.1	EMBL	gene	1369636	1370577	.	-	.	ID=gene1298;Name=azo1272;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1272
AM406670.1	EMBL	CDS	1369636	1370577	.	-	0	ID=cds1270;Parent=gene1298;Dbxref=EnsemblGenomes-Gn:azo1272,EnsemblGenomes-Tr:CAL93889,InterPro:IPR003399,UniProtKB/TrEMBL:A1K4Y4,NCBI_GP:CAL93889.1;Name=CAL93889.1;Note=Conserved hypothetical secreted protein. Similar to TREMBL:Q9HZ27 (53%25 identity)%3B TREMBL:Q88RI9 (46%25 identity)%3B TREMBL:Q8PGP4 (33%25 identity). Pfam (PF02470): mce related protein. SignalP reporting signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL93889.1;transl_table=11
AM406670.1	EMBL	gene	1370579	1371361	.	-	.	ID=gene1299;Name=azo1273;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1273
AM406670.1	EMBL	CDS	1370579	1371361	.	-	0	ID=cds1271;Parent=gene1299;Dbxref=EnsemblGenomes-Gn:azo1273,EnsemblGenomes-Tr:CAL93890,GOA:A1K4Y5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4Y5,NCBI_GP:CAL93890.1;Name=CAL93890.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q8PGP5 (60%25 identity)%3B TREMBL:Q9PDS7 (57%25 identity). InterPro (IPR003593): AAA ATPase. InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Specificity unclear;gbkey=CDS;product=putative ABC transporter ATP-binding protein;protein_id=CAL93890.1;transl_table=11
AM406670.1	EMBL	gene	1371358	1372500	.	-	.	ID=gene1300;Name=azo1274;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1274
AM406670.1	EMBL	CDS	1371358	1372500	.	-	0	ID=cds1272;Parent=gene1300;Dbxref=EnsemblGenomes-Gn:azo1274,EnsemblGenomes-Tr:CAL93891,InterPro:IPR003453,UniProtKB/TrEMBL:A1K4Y6,NCBI_GP:CAL93891.1;Name=CAL93891.1;Note=TREMBL:Q88RI7 (56%25 identity)%3B TREMBL:Q8PGP6 (42%25 identity). Pfam (PF02405): Domain of unknown function DUF140. TIGRFAM (TIGR00056): Conserved hypothetical protein. TMHMM reporting six transmembrane helices.%3B~Specificity unclear;gbkey=CDS;product=putative ABC transporter permease protein;protein_id=CAL93891.1;transl_table=11
AM406670.1	EMBL	gene	1372520	1374184	.	-	.	ID=gene1301;Name=yjjK;gbkey=Gene;gene=yjjK;gene_biotype=protein_coding;locus_tag=azo1275
AM406670.1	EMBL	CDS	1372520	1374184	.	-	0	ID=cds1273;Parent=gene1301;Dbxref=EnsemblGenomes-Gn:azo1275,EnsemblGenomes-Tr:CAL93892,GOA:A1K4Y7,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR022374,InterPro:IPR027417,UniProtKB/TrEMBL:A1K4Y7,NCBI_GP:CAL93892.1;Name=CAL93892.1;Note=ABC transporter ATP-binding protein yjjK. Presence of typical NB-ARC%2C KH%2C FolB and GAD domains. Occurence of Hydrolase like P-loop and C terminal alpha/beta chains like ATP synthease. Presence of Signal peptide and TM helices.85%25 identity and 92%25 similarity to Dechloromonas aromatica.ATPase of ABC transporter with duplicated ATPase domain. InterPro: AAA ATPase superfamily uvra: excinuclease ABC A subunit%3B~Family membership;gbkey=CDS;gene=yjjK;product=probable ABC transporter%2C ATP-binding protein;protein_id=CAL93892.1;transl_table=11
AM406670.1	EMBL	gene	1374585	1375484	.	+	.	ID=gene1302;Name=azo1276;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1276
AM406670.1	EMBL	CDS	1374585	1375484	.	+	0	ID=cds1274;Parent=gene1302;Dbxref=EnsemblGenomes-Gn:azo1276,EnsemblGenomes-Tr:CAL93893,GOA:A1K4Y8,InterPro:IPR013216,InterPro:IPR023576,InterPro:IPR029063,UniProtKB/TrEMBL:A1K4Y8,NCBI_GP:CAL93893.1;Name=CAL93893.1;Note=Putative methyltransferase Rv0089/MT0098/Mb0092 (EC 2.1.1.-). Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen%2C oxygen or carbon atoms is frequently employed in diverse organisms TREMBL:AAS95087-36%25identity%2C50%25 similarity InterPro: SAM (and some other nucleotide) binding motif rrmJ: ribosomal RNA large subunit methylation TIGRFAM:Transcription regulator%2C AsR family%2C Ubi/COQ family.%3B~Family membership;gbkey=CDS;product=putative O-methyltransferase;protein_id=CAL93893.1;transl_table=11
AM406670.1	EMBL	gene	1375505	1375996	.	-	.	ID=gene1303;Name=azo1277;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1277
AM406670.1	EMBL	CDS	1375505	1375996	.	-	0	ID=cds1275;Parent=gene1303;Dbxref=EnsemblGenomes-Gn:azo1277,EnsemblGenomes-Tr:CAL93894,GOA:A1K4Y9,InterPro:IPR000889,InterPro:IPR012336,InterPro:IPR029759,InterPro:IPR029760,UniProtKB/TrEMBL:A1K4Y9,NCBI_GP:CAL93894.1;Name=CAL93894.1;Note=conserved hypothetical glutathione peroxidase. Homolgy to pp1874 pf P. putida of 66%25 (trembl|Q88LQ5) Glutathione peroxidase (GSHPx)%2C an enzyme whose principal function is to protect against damage from endogenously-formed hydroxyperoxides%2C catalyses the reduction of hydroxyperoxides by glutathione Pfam: Glutatione peroxidase no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical glutathione peroxidase;protein_id=CAL93894.1;transl_table=11
AM406670.1	EMBL	gene	1376095	1378737	.	-	.	ID=gene1304;Name=azo1278;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1278
AM406670.1	EMBL	CDS	1376095	1378737	.	-	0	ID=cds1276;Parent=gene1304;Dbxref=EnsemblGenomes-Gn:azo1278,EnsemblGenomes-Tr:CAL93895,GOA:A1K4Z0,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR029787,UniProtKB/TrEMBL:A1K4Z0,NCBI_GP:CAL93895.1;Name=CAL93895.1;Note=EAL/GGDEF/PAS/PAC-domain containing signalling protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=EAL/GGDEF/PAS/PAC-domain containing signalling protein;protein_id=CAL93895.1;transl_table=11
AM406670.1	EMBL	gene	1378734	1379822	.	-	.	ID=gene1305;Name=azo1279;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1279
AM406670.1	EMBL	CDS	1378734	1379822	.	-	0	ID=cds1277;Parent=gene1305;Dbxref=EnsemblGenomes-Gn:azo1279,EnsemblGenomes-Tr:CAL93896,GOA:A1K4Z1,InterPro:IPR003088,InterPro:IPR004852,InterPro:IPR009056,InterPro:IPR026259,UniProtKB/TrEMBL:A1K4Z1,NCBI_GP:CAL93896.1;Name=CAL93896.1;Note=Probable cytochrome c peroxidase (EC 1.11.1.5)%2C an electron-transfer proteins having one or several haem c groups%2C bound to the protein by one or%2C more generally%2Ctwo thioether bonds involving sulphydryl groups of cysteine residues. CytC possess a wide range of properties and function in a large number of different redox processes. Similar to yhjA from E.coli.%3B~High confidence in function and specificity;gbkey=CDS;product=putative cytochrome C peroxidase;protein_id=CAL93896.1;transl_table=11
AM406670.1	EMBL	gene	1379865	1380641	.	-	.	ID=gene1306;Name=fpr1;gbkey=Gene;gene=fpr1;gene_biotype=protein_coding;locus_tag=azo1280
AM406670.1	EMBL	CDS	1379865	1380641	.	-	0	ID=cds1278;Parent=gene1306;Dbxref=EnsemblGenomes-Gn:azo1280,EnsemblGenomes-Tr:CAL93897,GOA:A1K4Z2,InterPro:IPR001433,InterPro:IPR001709,InterPro:IPR008333,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K4Z2,NCBI_GP:CAL93897.1;Name=CAL93897.1;Note=Ferredoxin-NADP+ reductase (EC 1.18.1.2) Homology to fpr of A. vinelandii of 79%25 (sprot|FENR_AZOVI). CATALYTIC ACTIVITY: Reduced ferredoxin + NADP(+) %3D oxidized ferredoxin + NADPH. Pfam: Oxidoreductase FAD-binding doamin%3B Oxidoreductase NAD-binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fpr1;product=ferredoxin-NADP+ reductase;protein_id=CAL93897.1;transl_table=11
AM406670.1	EMBL	gene	1380741	1381667	.	+	.	ID=gene1307;Name=azo1281;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1281
AM406670.1	EMBL	CDS	1380741	1381667	.	+	0	ID=cds1279;Parent=gene1307;Dbxref=EnsemblGenomes-Gn:azo1281,EnsemblGenomes-Tr:CAL93898,GOA:A1K4Z3,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K4Z3,NCBI_GP:CAL93898.1;Name=CAL93898.1;Note=Probable transcriptional regulator%2C LysR family proteins.57%25 Identity to TrEMBL%3BQ9HYK6%2C Q87XZ5%2C Q88MD6. Has PF03466%2C LysR substrate binding domain%3BIPR005119%2CLysR_subst%3B The structure of this domain is known and is IPR000847%2C HTH_LysR%3B Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse%2C but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family%2C the lysR family%2Cgroups together a range of proteins%2C including ampR%2C catM%2CcatR%2C cynR%2C cysB%2C gltC%2C iciA%2C ilvY%2C irgB%2C lysR%2C metR%2CmkaC%2C mleR%2C nahR%2C nhaR%2C nodD%2C nolR%2C oxyR%2C pssR%2C rbcR%2CsyrM%2C tcbR%2C tfdS and trpI. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.%3B~High confidence in function and specificity;gbkey=CDS;product=probable transcriptional regulator%2C LysR family;protein_id=CAL93898.1;transl_table=11
AM406670.1	EMBL	gene	1381825	1384443	.	-	.	ID=gene1308;Name=ndvB;gbkey=Gene;gene=ndvB;gene_biotype=protein_coding;locus_tag=azo1282
AM406670.1	EMBL	CDS	1381825	1384443	.	-	0	ID=cds1280;Parent=gene1308;Dbxref=EnsemblGenomes-Gn:azo1282,EnsemblGenomes-Tr:CAL93899,GOA:A1K4Z4,InterPro:IPR013781,InterPro:IPR017853,InterPro:IPR029044,UniProtKB/TrEMBL:A1K4Z4,NCBI_GP:CAL93899.1;Name=CAL93899.1;Note=Beta-(1-3)-glucosyl transferase%2C involved in the synthesis of the cyclic beta-(1%2C3)%2C(1%2C6)-D-glucan. 36%25 Glyco_trans_2. Pfam:PF00535%3B Glycos_transf_2. Signal peptide: present. TMhelix:9.%3B~Function unclear;gbkey=CDS;gene=ndvB;product=putative Beta-(1-3)-glucosyl transferase;protein_id=CAL93899.1;transl_table=11
AM406670.1	EMBL	gene	1384729	1385121	.	+	.	ID=gene1309;Name=azo1283;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1283
AM406670.1	EMBL	CDS	1384729	1385121	.	+	0	ID=cds1281;Parent=gene1309;Dbxref=EnsemblGenomes-Gn:azo1283,EnsemblGenomes-Tr:CAL93900,UniProtKB/TrEMBL:A1K4Z5,NCBI_GP:CAL93900.1;Name=CAL93900.1;Note=Conserved hypothetical membrane protein. Homology to PP1739 of P. putida of 30%25 (trembl|Q8EA80) No domains predicted. signal peptide 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93900.1;transl_table=11
AM406670.1	EMBL	gene	1385065	1386660	.	-	.	ID=gene1310;Name=ndvC;gbkey=Gene;gene=ndvC;gene_biotype=protein_coding;locus_tag=azo1284
AM406670.1	EMBL	CDS	1385065	1386660	.	-	0	ID=cds1282;Parent=gene1310;Dbxref=EnsemblGenomes-Gn:azo1284,EnsemblGenomes-Tr:CAL93901,GOA:A1K4Z6,InterPro:IPR013781,InterPro:IPR017853,UniProtKB/TrEMBL:A1K4Z6,NCBI_GP:CAL93901.1;Name=CAL93901.1;Note=Glucan 1-3-beta-glucosidase precursor.(Exo-13-beta-glucanase).Glucanases possibly play a role in cell expansion during growth in cell-cell fusion during mating and in spore release during sporulation. This enzyme may be involved in beta- glucan degradation and also function biosynthetically as a transglycosylase. 47%25%3B~Function unclear;gbkey=CDS;gene=ndvC;product=putative glucan 1%2C3-beta-glucosidase;protein_id=CAL93901.1;transl_table=11
AM406670.1	EMBL	gene	1386740	1389619	.	-	.	ID=gene1311;Name=gcvP;gbkey=Gene;gene=gcvP;gene_biotype=protein_coding;locus_tag=azo1285
AM406670.1	EMBL	CDS	1386740	1389619	.	-	0	ID=cds1283;Parent=gene1311;Dbxref=EnsemblGenomes-Gn:azo1285,EnsemblGenomes-Tr:CAL93902,GOA:A1K4Z7,InterPro:IPR003437,InterPro:IPR015421,InterPro:IPR015424,InterPro:IPR020580,InterPro:IPR020581,UniProtKB/TrEMBL:A1K4Z7,NCBI_GP:CAL93902.1;Name=CAL93902.1;Note=Glycine cleavage system P-protein. Homology to gcvP of E. coli of 63%25 (CAA52146). The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor%3B CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (By similarity). Tigrfam: gcvP: glycine cleavage system P protein Interpro: glycine cleavage system P protein (IPR003437) Pfam: glycine cleavage system P protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=gcvP;product=glycine cleavage system P-protein;protein_id=CAL93902.1;transl_table=11
AM406670.1	EMBL	gene	1389681	1390064	.	-	.	ID=gene1312;Name=gcvH;gbkey=Gene;gene=gcvH;gene_biotype=protein_coding;locus_tag=azo1286
AM406670.1	EMBL	CDS	1389681	1390064	.	-	0	ID=cds1284;Parent=gene1312;Dbxref=EnsemblGenomes-Gn:azo1286,EnsemblGenomes-Tr:CAL93903,GOA:A1K4Z8,InterPro:IPR002930,InterPro:IPR003016,InterPro:IPR011053,InterPro:IPR017453,NCBI_GP:CAL93903.1;Name=CAL93903.1;Note=Glycine cleavage system H protein [gcvH]%2C 70%25 identity to SProt%3BQ8XU99%2C Q82WQ5. TrEMBL%3BQ62FN0(67%25 Identity). Has PF01597%2C Glycine cleavage H-protein%3B IPR002930%2C GCV_H%3B This is a family of glycine cleavage H-proteins%2C part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.;gbkey=CDS;gene=gcvH;product=glycine cleavage system H protein [gcvH];protein_id=CAL93903.1;transl_table=11
AM406670.1	EMBL	gene	1390115	1391122	.	-	.	ID=gene1313;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=azo1287
AM406670.1	EMBL	CDS	1390115	1391122	.	-	0	ID=cds1285;Parent=gene1313;Dbxref=EnsemblGenomes-Gn:azo1287,EnsemblGenomes-Tr:CAL93904,GOA:A1K4Z9,InterPro:IPR006222,InterPro:IPR006223,InterPro:IPR013977,InterPro:IPR027266,InterPro:IPR028896,InterPro:IPR029043,UniProtKB/TrEMBL:A1K4Z9,NCBI_GP:CAL93904.1;Name=CAL93904.1;Note=Glycine cleavage T proteins are part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. The T-protein is an aminomethyl transferase that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein %3D (6R)-5%2C10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein Similar to sprot|GCST_NITEU (60%25). Pfam: Glycine cleavage T-protein (aminomethyltransferase) TIGRfam (TIGR00528): Glycine cleavage T-protein (aminomethyl transferase)%3B~High confidence in function and specificity;gbkey=CDS;gene=gcvT;product=glycine cleavage system T protein;protein_id=CAL93904.1;transl_table=11
AM406670.1	EMBL	gene	1391911	1393444	.	+	.	ID=gene1314;Name=azo_rrn5;gbkey=Gene;gene_biotype=rRNA;locus_tag=azo_rrn5
AM406670.1	EMBL	rRNA	1391911	1393444	.	+	.	ID=rna28;Parent=gene1314;gbkey=rRNA
AM406670.1	EMBL	exon	1391911	1393444	.	+	.	ID=id29;Parent=rna28;gbkey=rRNA
AM406670.1	EMBL	gene	1393517	1393593	.	+	.	ID=gene1315;Name=tRNA-Ile;gbkey=Gene;gene=tRNA-Ile;gene_biotype=tRNA;locus_tag=azo_tRNA_0025
AM406670.1	EMBL	tRNA	1393517	1393593	.	+	.	ID=rna29;Parent=gene1315;anticodon=(pos:1393551..1393553);gbkey=tRNA;gene=tRNA-Ile;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ile
AM406670.1	EMBL	exon	1393517	1393593	.	+	.	ID=id30;Parent=rna29;anticodon=(pos:1393551..1393553);gbkey=tRNA;gene=tRNA-Ile;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ile
AM406670.1	EMBL	gene	1393621	1393696	.	+	.	ID=gene1316;Name=tRNA-Ala;gbkey=Gene;gene=tRNA-Ala;gene_biotype=tRNA;locus_tag=azo_tRNA_0026
AM406670.1	EMBL	tRNA	1393621	1393696	.	+	.	ID=rna30;Parent=gene1316;anticodon=(pos:1393654..1393656);gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	exon	1393621	1393696	.	+	.	ID=id31;Parent=rna30;anticodon=(pos:1393654..1393656);gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	gene	1393962	1396848	.	+	.	ID=gene1317;Name=azo_rrn6;gbkey=Gene;gene_biotype=rRNA;locus_tag=azo_rrn6
AM406670.1	EMBL	rRNA	1393962	1396848	.	+	.	ID=rna31;Parent=gene1317;gbkey=rRNA
AM406670.1	EMBL	exon	1393962	1396848	.	+	.	ID=id32;Parent=rna31;gbkey=rRNA
AM406670.1	EMBL	gene	1397768	1398982	.	+	.	ID=gene1318;Name=narK;gbkey=Gene;gene=narK;gene_biotype=protein_coding;locus_tag=azo1288
AM406670.1	EMBL	CDS	1397768	1398982	.	+	0	ID=cds1286;Parent=gene1318;Dbxref=EnsemblGenomes-Gn:azo1288,EnsemblGenomes-Tr:CAL93905,GOA:A1K500,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K500,NCBI_GP:CAL93905.1;Name=CAL93905.1;Note=Probable nitrate transporters are involved in excretion of nitrite produced by the dissimilatory reduction of nitrate. NarK is polytopic membrane protein with 12 transmembrane domains which is involved in nitrate uptake and nitrite excretion and is thought to function as a nitrate/nitrite antiporter. At low concentrations of nitrate%2C NarK mediates the electrogenic excretion of nitrite rather than nitrate/nitrite exchange.%2C 90%25 similarity to a probable nitrate transporter protein in Azoarcus sp. EbN1.%2C InterPRo:04737: nitrate transporter%2CSignal peptide no present%2C TMHx:12 %2C%3B~High confidence in function and specificity;gbkey=CDS;gene=narK;product=putative nitrate transporter;protein_id=CAL93905.1;transl_table=11
AM406670.1	EMBL	gene	1399088	1400770	.	+	.	ID=gene1319;Name=azo1289;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1289
AM406670.1	EMBL	CDS	1399088	1400770	.	+	0	ID=cds1287;Parent=gene1319;Dbxref=EnsemblGenomes-Gn:azo1289,EnsemblGenomes-Tr:CAL93906,GOA:A1K501,InterPro:IPR000719,InterPro:IPR001932,InterPro:IPR011009,InterPro:IPR015655,UniProtKB/TrEMBL:A1K501,NCBI_GP:CAL93906.1;Name=CAL93906.1;Note=Putative serine/threonine protein kinase%2C%3B~Family membership;gbkey=CDS;product=putative serine/threonine protein kinase;protein_id=CAL93906.1;transl_table=11
AM406670.1	EMBL	gene	1400786	1401718	.	-	.	ID=gene1320;Name=azo1290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1290
AM406670.1	EMBL	CDS	1400786	1401718	.	-	0	ID=cds1288;Parent=gene1320;Dbxref=EnsemblGenomes-Gn:azo1290,EnsemblGenomes-Tr:CAL93907,UniProtKB/TrEMBL:A1K502,NCBI_GP:CAL93907.1;Name=CAL93907.1;Note=Conserved hypothetical protein. Homology to ebA98 of Azoarcus sp. EbN1 of 67%25 (gnl|keqq|eba:ebA983(KEGG)). No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93907.1;transl_table=11
AM406670.1	EMBL	gene	1401860	1402312	.	-	.	ID=gene1321;Name=sixA;gbkey=Gene;gene=sixA;gene_biotype=protein_coding;locus_tag=azo1291
AM406670.1	EMBL	CDS	1401860	1402312	.	-	0	ID=cds1289;Parent=gene1321;Dbxref=EnsemblGenomes-Gn:azo1291,EnsemblGenomes-Tr:CAL93908,InterPro:IPR013078,InterPro:IPR029033,UniProtKB/TrEMBL:A1K503,NCBI_GP:CAL93908.1;Name=CAL93908.1;Note=Putative phosphohistidine phosphatase%2C SixA. TIGRFAM: TIGR00249%3B sixA. Phosphohistidine phosphatase sixA (EC 3.1.3.-) (RX6). EXHIBITS PHOSPHOHISTIDINE PHOSPHATASE ACTIVITY TOWARDS THE HPT DOMAIN OF THE ARCB SENSOR INVOLVED IN THE MULTISTEP HIS- ASP PHOSPHORELAY.%3B~Specificity unclear;gbkey=CDS;gene=sixA;product=putative phosphohistidine phosphatase;protein_id=CAL93908.1;transl_table=11
AM406670.1	EMBL	gene	1402375	1403868	.	-	.	ID=gene1322;Name=azo1292;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1292
AM406670.1	EMBL	CDS	1402375	1403868	.	-	0	ID=cds1290;Parent=gene1322;Dbxref=EnsemblGenomes-Gn:azo1292,EnsemblGenomes-Tr:CAL93909,GOA:A1K504,InterPro:IPR007899,InterPro:IPR023577,UniProtKB/TrEMBL:A1K504,NCBI_GP:CAL93909.1;Name=CAL93909.1;Note=Conserved hypothetical protein%2C40%25 identity to TrEMBL%3BQ88AR4 Has PF01928|CYTH domain(IPR008172)%3BThese sequences are functionally identified as members of the adenylate cyclase family%2C which catalyses the conversion of ATP to 3'%2C5'-cyclic AMP and pyrophosphate. Has PF05235:CHAD domain(IPR007899)%3BThe CHAD domain is an alpha-helical domain functionally associated with the CYTH domains. It has conserved histidines that may chelate metals.;gbkey=CDS;product=adenylate cyclase;protein_id=CAL93909.1;transl_table=11
AM406670.1	EMBL	gene	1403946	1406627	.	-	.	ID=gene1323;Name=glnE;gbkey=Gene;gene=glnE;gene_biotype=protein_coding;locus_tag=azo1293
AM406670.1	EMBL	CDS	1403946	1406627	.	-	0	ID=cds1291;Parent=gene1323;Dbxref=EnsemblGenomes-Gn:azo1293,EnsemblGenomes-Tr:CAL93910,GOA:A1K505,InterPro:IPR005190,InterPro:IPR013546,InterPro:IPR023057,UniProtKB/TrEMBL:A1K505,NCBI_GP:CAL93910.1;Name=CAL93910.1;Note=Probable glutamate-ammonia-ligase adenylyltransferase (glutamine-synthetase adenylyltransferase) protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=glnE;product=probable [glutamate-ammonia-ligase] adenylyltransferase;protein_id=CAL93910.1;transl_table=11
AM406670.1	EMBL	gene	1406776	1410699	.	+	.	ID=gene1324;Name=azo1294;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1294
AM406670.1	EMBL	CDS	1406776	1410699	.	+	0	ID=cds1292;Parent=gene1324;Dbxref=EnsemblGenomes-Gn:azo1294,EnsemblGenomes-Tr:CAL93911,InterPro:IPR011836,InterPro:IPR025263,UniProtKB/TrEMBL:A1K506,NCBI_GP:CAL93911.1;Name=CAL93911.1;Note=Conserved hypothetical protein. Homology to cv2096 of C. violaceum of 32%25 (trembl|Q7NW94(SRS) no domains predicted no signal peptide 1 TMHs;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93911.1;transl_table=11
AM406670.1	EMBL	gene	1410696	1411553	.	+	.	ID=gene1325;Name=azo1295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1295
AM406670.1	EMBL	CDS	1410696	1411553	.	+	0	ID=cds1293;Parent=gene1325;Dbxref=EnsemblGenomes-Gn:azo1295,EnsemblGenomes-Tr:CAL93912,GOA:A1K507,InterPro:IPR001110,InterPro:IPR003010,UniProtKB/TrEMBL:A1K507,NCBI_GP:CAL93912.1;Name=CAL93912.1;Note=conserved hypothetical carbon-nitrogen hydrolase. Homolog to bb1933 of B. bronchiseptica (trembl|Q7WL17). InterPro: Carbon-nitrogen hydrolase (IPR003010) Pfam: Carbon-nitorgen hydrolase no signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical carbon-nitrogen hydrolase;protein_id=CAL93912.1;transl_table=11
AM406670.1	EMBL	gene	1411624	1413069	.	+	.	ID=gene1326;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=azo1296
AM406670.1	EMBL	CDS	1411624	1413069	.	+	0	ID=cds1294;Parent=gene1326;Dbxref=EnsemblGenomes-Gn:azo1296,EnsemblGenomes-Tr:CAL93913,InterPro:IPR002510,InterPro:IPR025502,UniProtKB/TrEMBL:A1K508,NCBI_GP:CAL93913.1;Name=CAL93913.1;Note=Probable TldD protein. Homology to tldD of E. coli of 59%25 (sprot|TLDD_ECOLI). Suppresses the inhibitory activity of the carbon storage regulator (csrA). Pfam: putative modulator of DNA gyrase no signal peptide no TMHs%3B~Function unclear;gbkey=CDS;gene=tldD;product=probable TldD protein;protein_id=CAL93913.1;transl_table=11
AM406670.1	EMBL	gene	1413077	1413520	.	-	.	ID=gene1327;Name=azo1297;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1297
AM406670.1	EMBL	CDS	1413077	1413520	.	-	0	ID=cds1295;Parent=gene1327;Dbxref=EnsemblGenomes-Gn:azo1297,EnsemblGenomes-Tr:CAL93914,GOA:A1K509,InterPro:IPR007048,InterPro:IPR015801,InterPro:IPR017737,UniProtKB/TrEMBL:A1K509,NCBI_GP:CAL93914.1;Name=CAL93914.1;Note=Conserved hypothetical protein. Homology to CV3985 of C.violaceum of 42%25 (tremble:Q7NR00). Has PF07025:(IPR010745)Protein of unknown function (DUF1316)%3BThis family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93914.1;transl_table=11
AM406670.1	EMBL	gene	1413533	1414231	.	-	.	ID=gene1328;Name=azo1298;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1298
AM406670.1	EMBL	CDS	1413533	1414231	.	-	0	ID=cds1296;Parent=gene1328;Dbxref=EnsemblGenomes-Gn:azo1298,EnsemblGenomes-Tr:CAL93915,InterPro:IPR017732,UniProtKB/TrEMBL:A1K510,NCBI_GP:CAL93915.1;Name=CAL93915.1;Note=Conserved hypothetical membrane protein. Homology to cv3984 of C. violaceum of 47%25 (trembl|Q7NR01(SRS)) no domains predicted no signal peptide 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93915.1;transl_table=11
AM406670.1	EMBL	gene	1414245	1415591	.	-	.	ID=gene1329;Name=azo1299;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1299
AM406670.1	EMBL	CDS	1414245	1415591	.	-	0	ID=cds1297;Parent=gene1329;Dbxref=EnsemblGenomes-Gn:azo1299,EnsemblGenomes-Tr:CAL93916,InterPro:IPR010263,UniProtKB/TrEMBL:A1K511,NCBI_GP:CAL93916.1;Name=CAL93916.1;Note=Hypothetical protein%2C50%25 identity (67%25 similarity)to TrEMBL%3BQ7NR02. TrEMBL%3BQ88IA6(39%25)%2CQ8XRU1(37%25). Has PF05936(IPR010263):Bacterial protein of unknown function (DUF876)%3BThis family consists of a series of hypothetical bacterial sequences of unknown function. No Signal Peptide or TMH reported present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93916.1;transl_table=11
AM406670.1	EMBL	gene	1415603	1416217	.	-	.	ID=gene1330;Name=azo1300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1300
AM406670.1	EMBL	CDS	1415603	1416217	.	-	0	ID=cds1298;Parent=gene1330;Dbxref=EnsemblGenomes-Gn:azo1300,EnsemblGenomes-Tr:CAL93917,InterPro:IPR017734,UniProtKB/TrEMBL:A1K512,NCBI_GP:CAL93917.1;Name=CAL93917.1;Note=Hypothetical protein%2C34%25 identity (52%25 similarity) to TrEMBL%3BQ7NR03. No domains%2C repeats%2C motifs or features were predicted with confidence.%3B~Function unclear;gbkey=CDS;product=Hypothetical protein;protein_id=CAL93917.1;transl_table=11
AM406670.1	EMBL	gene	1416388	1417059	.	+	.	ID=gene1331;Name=azo1301;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1301
AM406670.1	EMBL	CDS	1416388	1417059	.	+	0	ID=cds1299;Parent=gene1331;Dbxref=EnsemblGenomes-Gn:azo1301,EnsemblGenomes-Tr:CAL93918,InterPro:IPR009045,UniProtKB/TrEMBL:A1K513,NCBI_GP:CAL93918.1;Name=CAL93918.1;Note=Hypothetical membrane protein. No homology of the entire protein with the data bank. Pfam: D-alanyl-D-alanine carboxypeptidase (101-209 aa) no signal peptide 1 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93918.1;transl_table=11
AM406670.1	EMBL	gene	1417056	1420748	.	+	.	ID=gene1332;Name=azo1302;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1302
AM406670.1	EMBL	CDS	1417056	1420748	.	+	0	ID=cds1300;Parent=gene1332;Dbxref=EnsemblGenomes-Gn:azo1302,EnsemblGenomes-Tr:CAL93919,InterPro:IPR009612,InterPro:IPR010623,InterPro:IPR025743,UniProtKB/TrEMBL:A1K514,NCBI_GP:CAL93919.1;Name=CAL93919.1;Note=Conserved hypothetical membrane protein. Homology to CV3712 of Chromobacterium violaceum of 35%25 (trembl|Q7NR05) Signal P reporting Signal Peptide Present. TMHMM2 reporting 2 TMH's present. Has PF06761:(IPR009612)ImcF-related%3BThis family represents a conserved region within several bacterial proteins that resemble ImcF%2C which has been proposed [1] to be involved in Vibrio cholerae cell surface reorganisation%2C resulting in increased adherence to epithelial cells and increased conjugation frequency. Note that many family members are hypothetical proteins. Has PF06744%2C(IPR010623)Protein of unknown function (DUF1215)%3BThis family represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein%2C which has been proposed to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93919.1;transl_table=11
AM406670.1	EMBL	gene	1420836	1421360	.	+	.	ID=gene1333;Name=azo1303;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1303
AM406670.1	EMBL	CDS	1420836	1421360	.	+	0	ID=cds1301;Parent=gene1333;Dbxref=EnsemblGenomes-Gn:azo1303,EnsemblGenomes-Tr:CAL93920,InterPro:IPR008312,UniProtKB/TrEMBL:A1K515,NCBI_GP:CAL93920.1;Name=CAL93920.1;Note=Hypothetical protein%2C50%25 identity (66%25 Similarity) to TrEMBL%3BQ8XRT8. TrEMBL%3BQ7NR06(60%25 identity%2C74%25 similarity). Has PF05591%3BProtein of unknown function (DUF770)(IPR008312)This family consists of several proteins of unknown function from various bacterial species. No Signal peptide or TMH present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93920.1;transl_table=11
AM406670.1	EMBL	gene	1421344	1422837	.	+	.	ID=gene1334;Name=azo1304;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1304
AM406670.1	EMBL	CDS	1421344	1422837	.	+	0	ID=cds1302;Parent=gene1334;Dbxref=EnsemblGenomes-Gn:azo1304,EnsemblGenomes-Tr:CAL93921,InterPro:IPR010269,UniProtKB/TrEMBL:A1K516,NCBI_GP:CAL93921.1;Name=CAL93921.1;Note=Hypothetical protein%2C63%25 identity (81%25 similarity) to TrEMBL%3BQ8XRT7. TrEMBL%3BQ7NR07(73%25 identity%2C86%25 similarity). Has (IPR010269 )PF05943:Protein of unknown function (DUF877)%3BThis family consists of a number of uncharacterised bacterial proteins. The function of this family is unknown. No Signal peptide or TMH present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93921.1;transl_table=11
AM406670.1	EMBL	gene	1422881	1423378	.	+	.	ID=gene1335;Name=azo1305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1305
AM406670.1	EMBL	CDS	1422881	1423378	.	+	0	ID=cds1303;Parent=gene1335;Dbxref=EnsemblGenomes-Gn:azo1305,EnsemblGenomes-Tr:CAL93922,InterPro:IPR008514,UniProtKB/TrEMBL:A1K517,NCBI_GP:CAL93922.1;Name=CAL93922.1;Note=Conserved hypothetical protein. Homology to CV3977 of C.violaceum of 77%25 (tremble:Q7NR08). Has PF05638:(IPR008514)Protein of unknown function (DUF796)%3BThis family consists of several bacterial proteins of unknown function. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93922.1;transl_table=11
AM406670.1	EMBL	gene	1423378	1423854	.	+	.	ID=gene1336;Name=azo1306;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1306
AM406670.1	EMBL	CDS	1423378	1423854	.	+	0	ID=cds1304;Parent=gene1336;Dbxref=EnsemblGenomes-Gn:azo1306,EnsemblGenomes-Tr:CAL93923,InterPro:IPR006665,UniProtKB/TrEMBL:A1K518,NCBI_GP:CAL93923.1;Name=CAL93923.1;Note=Hypothetical secreted protein. Homology to CV3976 of Chromobacterium violaceum of 26%25 (trembl|Q7NR09(SRS)). No TMHs Signal Peptide Present. Has PF00691:OmpA family%3B(IPR006665 OmpA/MotB):The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL93923.1;transl_table=11
AM406670.1	EMBL	gene	1423911	1426628	.	+	.	ID=gene1337;Name=azo1307;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1307
AM406670.1	EMBL	CDS	1423911	1426628	.	+	0	ID=cds1305;Parent=gene1337;Dbxref=EnsemblGenomes-Gn:azo1307,EnsemblGenomes-Tr:CAL93924,InterPro:IPR006531,InterPro:IPR006533,InterPro:IPR017847,InterPro:IPR018769,InterPro:IPR028244,UniProtKB/TrEMBL:A1K519,NCBI_GP:CAL93924.1;Name=CAL93924.1;Note=Probable vgr-related protein%2C41%25 identity (55%25 similarity) to TrEMBL%3BQ7NY43. TrEMBL%3BQ8XSF8 Has (IPR006533 Rhs_Vgr)PF04524:Protein of unknown function%2C DUF586%3BThis family contains a conserved region in several bacterial proteins of unknown function. Coils2 program predicts presence of a coiled coil.;gbkey=CDS;product=probable vgr related protein;protein_id=CAL93924.1;transl_table=11
AM406670.1	EMBL	gene	1426635	1428473	.	+	.	ID=gene1338;Name=azo1308;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1308
AM406670.1	EMBL	CDS	1426635	1428473	.	+	0	ID=cds1306;Parent=gene1338;Dbxref=EnsemblGenomes-Gn:azo1308,EnsemblGenomes-Tr:CAL93925,InterPro:IPR010272,UniProtKB/TrEMBL:A1K520,NCBI_GP:CAL93925.1;Name=CAL93925.1;Note=Conserved hypothetical protein. Homology to CV3969 of C.violaceum of 56%25 (tremble: Q7NR16). Has (IPR010272)PF05947:Bacterial protein of unknown function (DUF879)%3BThis family consists of several hypothetical bacterial proteins of unknown function. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93925.1;transl_table=11
AM406670.1	EMBL	gene	1428437	1429453	.	+	.	ID=gene1339;Name=azo1309;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1309
AM406670.1	EMBL	CDS	1428437	1429453	.	+	0	ID=cds1307;Parent=gene1339;Dbxref=EnsemblGenomes-Gn:azo1309,EnsemblGenomes-Tr:CAL93926,InterPro:IPR010732,UniProtKB/TrEMBL:A1K521,NCBI_GP:CAL93926.1;Name=CAL93926.1;Note=Conserved hypothetical protein. Homology to CV3967 of C.violaceum of 45%25 (tremble:Q7NR18) Has (IPR010732)PF06996:Protein of unknown function (DUF1305)%3BThis family consists of several hypothetical bacterial proteins of around 300 residues in length. The function of this family is unknown although one member (Q93IT4) from Salmonella enterica is thought to be involved in virulence. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93926.1;transl_table=11
AM406670.1	EMBL	gene	1429450	1430565	.	-	.	ID=gene1340;Name=azo1310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1310
AM406670.1	EMBL	CDS	1429450	1430565	.	-	0	ID=cds1308;Parent=gene1340;Dbxref=EnsemblGenomes-Gn:azo1310,EnsemblGenomes-Tr:CAL93927,InterPro:IPR010657,InterPro:IPR017740,UniProtKB/TrEMBL:A1K522,NCBI_GP:CAL93927.1;Name=CAL93927.1;Note=Conserved hypothetical protein. Homology to CV3963 of C.violaceum of 37%25 (tremble:Q7NR22). Has (IPR01065)PF06812:ImpA-related N-terminal%3BThis family represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein%2C which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans. Note that many family members are hypothetical proteins. No signal peptide present. No TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93927.1;transl_table=11
AM406670.1	EMBL	gene	1430572	1430835	.	-	.	ID=gene1341;Name=azo1311;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1311
AM406670.1	EMBL	CDS	1430572	1430835	.	-	0	ID=cds1309;Parent=gene1341;Dbxref=EnsemblGenomes-Gn:azo1311,EnsemblGenomes-Tr:CAL93928,InterPro:IPR008727,UniProtKB/TrEMBL:A1K523,NCBI_GP:CAL93928.1;Name=CAL93928.1;Note=conserved hypothetical protein Has 2 PF05488 PAAR motif(IPR008727)%3BThis motif is found usually in pairs in a family of bacterial membrane proteins. It is also found as a triplet of tandem repeats comprising the entire length in a another family of hypothetical proteins.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93928.1;transl_table=11
AM406670.1	EMBL	gene	1431039	1432133	.	+	.	ID=gene1342;Name=azo1312;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1312
AM406670.1	EMBL	CDS	1431039	1432133	.	+	0	ID=cds1310;Parent=gene1342;Dbxref=EnsemblGenomes-Gn:azo1312,EnsemblGenomes-Tr:CAL93929,GOA:A1K524,InterPro:IPR010280,InterPro:IPR011869,InterPro:IPR029063,NCBI_GP:CAL93929.1;Name=CAL93929.1;Note=tRNA (Uracil-5-)-methyltransferase (EC 2.1.1.35) (tRNA(M-5-U54)- methyltransferase) (RUMT). Catalyzes the formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNA.%3B~Family membership;gbkey=CDS;product=tRNA (uracil-5-)-methyltransferase;protein_id=CAL93929.1;transl_table=11
AM406670.1	EMBL	gene	1432168	1432506	.	+	.	ID=gene1343;Name=phnA;gbkey=Gene;gene=phnA;gene_biotype=protein_coding;locus_tag=azo1313
AM406670.1	EMBL	CDS	1432168	1432506	.	+	0	ID=cds1311;Parent=gene1343;Dbxref=EnsemblGenomes-Gn:azo1313,EnsemblGenomes-Tr:CAL93930,GOA:A1K525,InterPro:IPR004624,InterPro:IPR013987,InterPro:IPR013988,UniProtKB/TrEMBL:A1K525,NCBI_GP:CAL93930.1;Name=CAL93930.1;Note=PhnA protein: Phosphonoacetate hydrolase is a novel carbon-phosphorus bond cleavage enzyme.The phnA gene is part of a large operon in Escherichia coli associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. PhnA is found in both gram positive 69%25 PhnA.PhnA protein Pfam:PF03831%3B PhnA%3B 1. TIGRFAMs:TIGR00686%3B phnA%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=phnA;product=putative phosphonoacetate hydrolase protein;protein_id=CAL93930.1;transl_table=11
AM406670.1	EMBL	gene	1432522	1432893	.	-	.	ID=gene1344;Name=azo1314;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1314
AM406670.1	EMBL	CDS	1432522	1432893	.	-	0	ID=cds1312;Parent=gene1344;Dbxref=EnsemblGenomes-Gn:azo1314,EnsemblGenomes-Tr:CAL93931,UniProtKB/TrEMBL:A1K526,NCBI_GP:CAL93931.1;Name=CAL93931.1;Note=Conserved hypothetical protein. Homology to ebA3072 Azoarcus sp. EbN1 of 61%25 (gnl|keqq|eba:ebA3072(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93931.1;transl_table=11
AM406670.1	EMBL	gene	1432952	1433749	.	-	.	ID=gene1345;Name=azo1315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1315
AM406670.1	EMBL	CDS	1432952	1433749	.	-	0	ID=cds1313;Parent=gene1345;Dbxref=EnsemblGenomes-Gn:azo1315,EnsemblGenomes-Tr:CAL93932,InterPro:IPR005226,UniProtKB/TrEMBL:A1K527,NCBI_GP:CAL93932.1;Name=CAL93932.1;Note=Conserved hypothetical membrane protein. Homology to blr8071 of B. japonicum of 56%25 (trembl|Q89BS7). No domains predicted signal peptide probable 6 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93932.1;transl_table=11
AM406670.1	EMBL	gene	1433746	1434351	.	-	.	ID=gene1346;Name=azo1316;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1316
AM406670.1	EMBL	CDS	1433746	1434351	.	-	0	ID=cds1314;Parent=gene1346;Dbxref=EnsemblGenomes-Gn:azo1316,EnsemblGenomes-Tr:CAL93933,GOA:A1K528,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1K528,NCBI_GP:CAL93933.1;Name=CAL93933.1;Note=47%25 AAA_ATPase.IPR003439%3B ABC_transporter.IPR008995. Pfam:PF00005%3B ABC_tran%3B 1. SMART:SM00382%3B AAA%3B 1. non-secretory protein%3B~Function unclear;gbkey=CDS;product=putative ATP binding protein;protein_id=CAL93933.1;transl_table=11
AM406670.1	EMBL	gene	1434635	1435387	.	+	.	ID=gene1347;Name=azo1317;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1317
AM406670.1	EMBL	CDS	1434635	1435387	.	+	0	ID=cds1315;Parent=gene1347;Dbxref=EnsemblGenomes-Gn:azo1317,EnsemblGenomes-Tr:CAL93934,InterPro:IPR029063,UniProtKB/TrEMBL:A1K529,NCBI_GP:CAL93934.1;Name=CAL93934.1;Note=Conserved hypothetical protein. Homology to CCO1214 of Campylobacter coli of 38%25 (gi|57168023|ref|ZP_00367162.1|(NBCI ENTREZ)). Has PF07021%2C Methionine biosynthesis protein MetW%3BIPR010743%3B This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria%2C gram-positive bacteria and fungi%2C except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida%2C as in gram-positive bacteria and certain fungi%2C the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93934.1;transl_table=11
AM406670.1	EMBL	gene	1435529	1436443	.	-	.	ID=gene1348;Name=azo1318;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1318
AM406670.1	EMBL	CDS	1435529	1436443	.	-	0	ID=cds1316;Parent=gene1348;Dbxref=EnsemblGenomes-Gn:azo1318,EnsemblGenomes-Tr:CAL93935,InterPro:IPR007379,UniProtKB/TrEMBL:A1K530,NCBI_GP:CAL93935.1;Name=CAL93935.1;Note=Conserved hypothetical membrane protein. Homology to RS04440 of Ralstonia solanacearum of 40%25 (trembl|Q8Y277) TMHMM2 reporting 2 TMH's present. Signal peptide Present. Has PF04280%3BTim44-like domain(IPR007379):Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93935.1;transl_table=11
AM406670.1	EMBL	gene	1436614	1437468	.	-	.	ID=gene1349;Name=azo1319;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1319
AM406670.1	EMBL	CDS	1436614	1437468	.	-	0	ID=cds1317;Parent=gene1349;Dbxref=EnsemblGenomes-Gn:azo1319,EnsemblGenomes-Tr:CAL93936,GOA:A1K531,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:A1K531,NCBI_GP:CAL93936.1;Name=CAL93936.1;Note=Hypothetical protein Rv1403c/MT1447/Mb1438c precursor. TREMBL:Q92U99_Putative methyl transferase%2C S-adenosyl-L-methionine (SAM)-29%25 identity%2C 42%25 similarity. InterPro: ubiE/COQ5 methyltransferase pimt: protein-L-isoaspartate O-methyltr Pfam: ubiE/COQ5 methyl transferase family%2C Dihydrodipicolinate synthetase family%2C TerD (Bacterial stress protein domains). HTH_1 predicted regulatory helix turn helix. TIGRFAM: moaC%2C met p-daseII%3B~Specificity unclear;gbkey=CDS;product=putative methyltransferase;protein_id=CAL93936.1;transl_table=11
AM406670.1	EMBL	gene	1437635	1438639	.	+	.	ID=gene1350;Name=azo1320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1320
AM406670.1	EMBL	CDS	1437635	1438639	.	+	0	ID=cds1318;Parent=gene1350;Dbxref=EnsemblGenomes-Gn:azo1320,EnsemblGenomes-Tr:CAL93937,GOA:A1K532,InterPro:IPR003313,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,UniProtKB/TrEMBL:A1K532,NCBI_GP:CAL93937.1;Name=CAL93937.1;Note=Putative AraC-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative AraC-family transcriptional regulator;protein_id=CAL93937.1;transl_table=11
AM406670.1	EMBL	gene	1438850	1439548	.	+	.	ID=gene1351;Name=azo1321;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1321
AM406670.1	EMBL	CDS	1438850	1439548	.	+	0	ID=cds1319;Parent=gene1351;Dbxref=EnsemblGenomes-Gn:azo1321,EnsemblGenomes-Tr:CAL93938,InterPro:IPR025202,UniProtKB/TrEMBL:A1K533,NCBI_GP:CAL93938.1;Name=CAL93938.1;Note=Conserved hypothetical protein. Homology to Psyc03001842 of Psychrobacter sp. 273-4 of 57%25 (gi|52853589|ref|ZP_00145853.2|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93938.1;transl_table=11
AM406670.1	EMBL	gene	1439761	1440165	.	+	.	ID=gene1352;Name=azo1322;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1322
AM406670.1	EMBL	CDS	1439761	1440165	.	+	0	ID=cds1320;Parent=gene1352;Dbxref=EnsemblGenomes-Gn:azo1322,EnsemblGenomes-Tr:CAL93939,UniProtKB/TrEMBL:A1K534,NCBI_GP:CAL93939.1;Name=CAL93939.1;gbkey=CDS;inference=nucleotide motif:Gismo;product=hypothetical protein;protein_id=CAL93939.1;transl_table=11
AM406670.1	EMBL	gene	1440382	1441617	.	+	.	ID=gene1353;Name=azo1323;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1323
AM406670.1	EMBL	CDS	1440382	1441617	.	+	0	ID=cds1321;Parent=gene1353;Dbxref=EnsemblGenomes-Gn:azo1323,EnsemblGenomes-Tr:CAL93940,GOA:A1K535,InterPro:IPR000719,InterPro:IPR008271,InterPro:IPR011009,UniProtKB/TrEMBL:A1K535,NCBI_GP:CAL93940.1;Name=CAL93940.1;Note=Probable protein kinase InterPro: Protein kinase%2CProtein kinase-like;gbkey=CDS;product=probable protein kinase;protein_id=CAL93940.1;transl_table=11
AM406670.1	EMBL	gene	1441791	1442165	.	-	.	ID=gene1354;Name=azo1324;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1324
AM406670.1	EMBL	CDS	1441791	1442165	.	-	0	ID=cds1322;Parent=gene1354;Dbxref=EnsemblGenomes-Gn:azo1324,EnsemblGenomes-Tr:CAL93941,InterPro:IPR027417,UniProtKB/TrEMBL:A1K536,NCBI_GP:CAL93941.1;Name=CAL93941.1;Note=C-terminal part of GTP-binding protein hflX. TREMBL:Q7NU63: 66%25 identity%3B 83%25 similarity ( the protein of query matches only with C-terminal part (124 aminoacids) of putative GTP binding proteins in the database) InterPro:IPR006073%3B GTP1_OBG. PRINTS:PR00326%3B GTP1OBG Pfam:Sigma54_activat: Sigma-54 interaction domain Absence of transmembrane helices (TMHMM predicted)%3B~Function unclear;gbkey=CDS;product=conserved hypothetical GTP binding protein;protein_id=CAL93941.1;transl_table=11
AM406670.1	EMBL	gene	1442281	1443378	.	-	.	ID=gene1355;Name=azo1325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1325
AM406670.1	EMBL	CDS	1442281	1443378	.	-	0	ID=cds1323;Parent=gene1355;Dbxref=EnsemblGenomes-Gn:azo1325,EnsemblGenomes-Tr:CAL93942,UniProtKB/TrEMBL:A1K537,NCBI_GP:CAL93942.1;Name=CAL93942.1;Note=Region start changed from 1443402 to 1443378 (-24 bases)%2C %2C Changed start codon from att to next atg;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93942.1;transl_table=11
AM406670.1	EMBL	gene	1443478	1443669	.	+	.	ID=gene1356;Name=azo1326;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1326
AM406670.1	EMBL	CDS	1443478	1443669	.	+	0	ID=cds1324;Parent=gene1356;Dbxref=EnsemblGenomes-Gn:azo1326,EnsemblGenomes-Tr:CAL93943,UniProtKB/TrEMBL:A1K538,NCBI_GP:CAL93943.1;Name=CAL93943.1;Note=Hypothetical Protein. No domains%2C repeats%2C motifs or features could be predicted above threshold scores.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL93943.1;transl_table=11
AM406670.1	EMBL	gene	1443843	1445237	.	-	.	ID=gene1357;Name=hflX2;gbkey=Gene;gene=hflX2;gene_biotype=protein_coding;locus_tag=azo1327
AM406670.1	EMBL	CDS	1443843	1445237	.	-	0	ID=cds1325;Parent=gene1357;Dbxref=EnsemblGenomes-Gn:azo1327,EnsemblGenomes-Tr:CAL93944,GOA:A1K539,InterPro:IPR006073,InterPro:IPR016496,InterPro:IPR025121,InterPro:IPR027417,UniProtKB/TrEMBL:A1K539,NCBI_GP:CAL93944.1;Name=CAL93944.1;Note=GTP-binding protein hflX. trembl:Q7NU63:77%25 identity%2C 83%25 similarity The proteins contain GTP-binding motifs and are GTP1_OBG. PRINTS:PR00326%3B GTP1OBG Pfam:MMR_HSR1:GTPase of unknown function thdF: tRNA modification GTPase TrmE No signal peptide present (SignalP predicted). No transmembrane helices present (TMHMM predicted)%3B~Family membership;gbkey=CDS;gene=hflX2;product=probable GTP-binding protein HflX;protein_id=CAL93944.1;transl_table=11
AM406670.1	EMBL	gene	1445319	1445408	.	-	.	ID=gene1358;Name=tRNA-Ser;gbkey=Gene;gene=tRNA-Ser;gene_biotype=tRNA;locus_tag=azo_tRNA_0027
AM406670.1	EMBL	tRNA	1445319	1445408	.	-	.	ID=rna32;Parent=gene1358;anticodon=(pos:complement(1445372..1445374));gbkey=tRNA;gene=tRNA-Ser;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ser
AM406670.1	EMBL	exon	1445319	1445408	.	-	.	ID=id33;Parent=rna32;anticodon=(pos:complement(1445372..1445374));gbkey=tRNA;gene=tRNA-Ser;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ser
AM406670.1	EMBL	gene	1445591	1446979	.	+	.	ID=gene1359;Name=azo1328;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1328
AM406670.1	EMBL	CDS	1445591	1446979	.	+	0	ID=cds1326;Parent=gene1359;Dbxref=EnsemblGenomes-Gn:azo1328,EnsemblGenomes-Tr:CAL93945,GOA:A1K540,InterPro:IPR000189,InterPro:IPR001638,InterPro:IPR008258,InterPro:IPR023346,UniProtKB/TrEMBL:A1K540,NCBI_GP:CAL93945.1;Name=CAL93945.1;Note=Conserved hypothetical protein. Fusion Protein of bacterial extracellular solute-binding protein and transglycosylase Homology to pp1036 of P. putida of 37%25 (trembl|Q88P17) InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR001638)%3B solute binding protein/glutamate receptor (IPR001311)%3B SLT domain (IPR000189) Pfam: Bacterial extracellular solute-binding protein%3B Transglycosylase SLT domain signal peptide no TMHs recN: DNA repair protein RecN;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93945.1;transl_table=11
AM406670.1	EMBL	gene	1446976	1448064	.	-	.	ID=gene1360;Name=aapM;gbkey=Gene;gene=aapM;gene_biotype=protein_coding;locus_tag=azo1329
AM406670.1	EMBL	CDS	1446976	1448064	.	-	0	ID=cds1327;Parent=gene1360;Dbxref=EnsemblGenomes-Gn:azo1329,EnsemblGenomes-Tr:CAL93946,GOA:A1K541,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:A1K541,NCBI_GP:CAL93946.1;Name=CAL93946.1;Note=Putative amino-acid ABC transporter permease. Homology to aapM of R. leguminosarum of 38%25 (sprot|AAPM_RHILV) PROBABLY PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM YDHWXYZ FOR AN AMINO ACID%3B PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE. Pfam: binding-protein-dependent transport system signal peptide probable 8 TMHs%3B~Family membership;gbkey=CDS;gene=aapM;product=putative amino acid permease;protein_id=CAL93946.1;transl_table=11
AM406670.1	EMBL	gene	1448061	1449080	.	-	.	ID=gene1361;Name=aapQ;gbkey=Gene;gene=aapQ;gene_biotype=protein_coding;locus_tag=azo1330
AM406670.1	EMBL	CDS	1448061	1449080	.	-	0	ID=cds1328;Parent=gene1361;Dbxref=EnsemblGenomes-Gn:azo1330,EnsemblGenomes-Tr:CAL93947,GOA:A1K542,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:A1K542,NCBI_GP:CAL93947.1;Name=CAL93947.1;Note=Putative amino acid permease. Homology to aapQ of R. leguminosarum of 35%25 (sprot|AAPQ_RHILVast). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR L-AMINO ACIDS. AFFECTS THE UPTAKE AS WELL AS EFFLUX OF THESE AMINO ACIDS. PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE. InterPro: Binding-protein-dependent transport systems inner membrane component (IPR000515) Pfam: Binding-protein -dependent transport system 1 HTH no signal peptide probable 4 TMHs%3B~Family membership;gbkey=CDS;gene=aapQ;product=putative amino acid permease;protein_id=CAL93947.1;transl_table=11
AM406670.1	EMBL	gene	1449038	1450072	.	-	.	ID=gene1362;Name=aapJ;gbkey=Gene;gene=aapJ;gene_biotype=protein_coding;locus_tag=azo1331
AM406670.1	EMBL	CDS	1449038	1450072	.	-	0	ID=cds1329;Parent=gene1362;Dbxref=EnsemblGenomes-Gn:azo1331,EnsemblGenomes-Tr:CAL93948,GOA:A1K543,InterPro:IPR001638,InterPro:IPR018313,UniProtKB/TrEMBL:A1K543,NCBI_GP:CAL93948.1;Name=CAL93948.1;Note=Putative amino acid ABC transporter periplasmic binding protein. Homology to aapJ of R. leguminosarum of 52%25 (sprot|AAPJ_RHILV). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR L-AMINO ACIDS AFFECTS THE UPTAKE AS WELL AS EFFLUX OF THESE AMINO ACIDS. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR001638)%3B solute binding protein/glutamate receptor (IPR001311) Pfam: Bacterial extracellular solute-binding proteins signal peptide no TMHs TIGR00045: conserved hypothetical prote%3B~High confidence in function and specificity;gbkey=CDS;gene=aapJ;product=putative amino acid-binding protein;protein_id=CAL93948.1;transl_table=11
AM406670.1	EMBL	gene	1450197	1451132	.	-	.	ID=gene1363;Name=cbl 1;gbkey=Gene;gene=cbl 1;gene_biotype=protein_coding;locus_tag=azo1332
AM406670.1	EMBL	CDS	1450197	1451132	.	-	0	ID=cds1330;Parent=gene1363;Dbxref=EnsemblGenomes-Gn:azo1332,EnsemblGenomes-Tr:CAL93949,GOA:A1K544,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K544,NCBI_GP:CAL93949.1;Name=CAL93949.1;Note=HTH-type transcriptional regulator cbl (Cys regulon transcriptional activator) Belongs to the LysR family of transcriptional regulators. THIS PROTEIN IS A POSITIVE REGULATOR OF GENE EXPRESSION FOR THE CYSTEINE REGULON. THE INDUCER FOR CYSB IS N-ACETYLSERINE (BY SIMILARITY). ribD_Cterm: riboflavin-specific deami 55%25 similarity to the HTH-type transcriptional regulator cbl%2C E. coli SWISSPROT:CBL_ECOLI IPR000847%3B HTH_LysR. IPR005119%3B LysR_subst. PF00126%3B HTH_1%3B 1. helix-turn-helix PF03466%3B LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~High confidence in function and specificity;gbkey=CDS;gene=cbl 1;product=putative HTH-type transcriptional regulator cbl;protein_id=CAL93949.1;transl_table=11
AM406670.1	EMBL	gene	1451135	1452220	.	-	.	ID=gene1364;Name=cysA;gbkey=Gene;gene=cysA;gene_biotype=protein_coding;locus_tag=azo1333
AM406670.1	EMBL	CDS	1451135	1452220	.	-	0	ID=cds1331;Parent=gene1364;Dbxref=EnsemblGenomes-Gn:azo1333,EnsemblGenomes-Tr:CAL93950,GOA:A1K545,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005666,InterPro:IPR008995,InterPro:IPR014769,InterPro:IPR017871,InterPro:IPR024765,InterPro:IPR027417,UniProtKB/TrEMBL:A1K545,NCBI_GP:CAL93950.1;Name=CAL93950.1;Note=Sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25) (Sulfate-transporting ATPase). Part of the ABC transporter complex cysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system (By similarity). InterPro: AAA ATPase superfamily ruvB: Holliday junction DNA helicase Ru%3B~High confidence in function and specificity;gbkey=CDS;gene=cysA;product=putative sulfate transport ATP-binding protein;protein_id=CAL93950.1;transl_table=11
AM406670.1	EMBL	gene	1452232	1453119	.	-	.	ID=gene1365;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=azo1334
AM406670.1	EMBL	CDS	1452232	1453119	.	-	0	ID=cds1332;Parent=gene1365;Dbxref=EnsemblGenomes-Gn:azo1334,EnsemblGenomes-Tr:CAL93951,GOA:A1K546,InterPro:IPR000515,InterPro:IPR005667,InterPro:IPR011866,UniProtKB/TrEMBL:A1K546,NCBI_GP:CAL93951.1;Name=CAL93951.1;Note=Sulfate transport system permease protein cysW. Part of the ABC transporter complex cysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane. InterPro: Binding-protein-dependent transport systems inner membrane component uppS: undecaprenyl diphosphate synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=cysW;product=putative sulfate transport system permease protein;protein_id=CAL93951.1;transl_table=11
AM406670.1	EMBL	gene	1453119	1453973	.	-	.	ID=gene1366;Name=cysT;gbkey=Gene;gene=cysT;gene_biotype=protein_coding;locus_tag=azo1335
AM406670.1	EMBL	CDS	1453119	1453973	.	-	0	ID=cds1333;Parent=gene1366;Dbxref=EnsemblGenomes-Gn:azo1335,EnsemblGenomes-Tr:CAL93952,GOA:A1K547,InterPro:IPR000515,InterPro:IPR005667,InterPro:IPR011865,UniProtKB/TrEMBL:A1K547,NCBI_GP:CAL93952.1;Name=CAL93952.1;Note=Probable sulfate transport system permease protein cysT. Part of the ABC transporter complex cysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane (By similarity). InterPro: Binding-protein-dependent transport systems inner membrane component gntP: gluconate transporter%3B~High confidence in function and specificity;gbkey=CDS;gene=cysT;product=sulfate transport system permease protein probably;protein_id=CAL93952.1;transl_table=11
AM406670.1	EMBL	gene	1453973	1454983	.	-	.	ID=gene1367;Name=cysP;gbkey=Gene;gene=cysP;gene_biotype=protein_coding;locus_tag=azo1336
AM406670.1	EMBL	CDS	1453973	1454983	.	-	0	ID=cds1334;Parent=gene1367;Dbxref=EnsemblGenomes-Gn:azo1336,EnsemblGenomes-Tr:CAL93953,GOA:A1K548,InterPro:IPR005669,UniProtKB/TrEMBL:A1K548,NCBI_GP:CAL93953.1;Name=CAL93953.1;Note=CysP: sulfate/thiosulfate periplasmic binding protein. Sulfate-binding protein precursor (Sulfate starvation-induced protein 2) (SSI2). This protein specifically binds sulfate and is involved in its transmembrane transport. mazG: MazG family protein%3B~High confidence in function and specificity;gbkey=CDS;gene=cysP;product=putative sulfate transport system substrate-binding protein;protein_id=CAL93953.1;transl_table=11
AM406670.1	EMBL	gene	1455298	1456512	.	+	.	ID=gene1368;Name=azo1337;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1337
AM406670.1	EMBL	CDS	1455298	1456512	.	+	0	ID=cds1335;Parent=gene1368;Dbxref=EnsemblGenomes-Gn:azo1337,EnsemblGenomes-Tr:CAL93954,InterPro:IPR002477,InterPro:IPR011757,InterPro:IPR011970,InterPro:IPR023346,UniProtKB/TrEMBL:A1K549,NCBI_GP:CAL93954.1;Name=CAL93954.1;Note=Conserved hypothetical peptidoglycan binding protein. Homology to bb3579 of b. bronchiseptica of 69%25 (trembl|Q7WGL0) InterPro: Putative peptidoglycan binding domain 1 (IPR002477) Pfam: Putative peptidoglycan binding domain This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical peptidoglycan-binding protein;protein_id=CAL93954.1;transl_table=11
AM406670.1	EMBL	gene	1456606	1457373	.	+	.	ID=gene1369;Name=azo1338;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1338
AM406670.1	EMBL	CDS	1456606	1457373	.	+	0	ID=cds1336;Parent=gene1369;Dbxref=EnsemblGenomes-Gn:azo1338,EnsemblGenomes-Tr:CAL93955,GOA:A1K550,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K550,NCBI_GP:CAL93955.1;Name=CAL93955.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8FWK3 (58%25 identity)%3B TREMBL:Q9AHY1 (58%25 identity). Pfam (PF00106): Short chain dehydrogenase.%3B~Family membership;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL93955.1;transl_table=11
AM406670.1	EMBL	gene	1457532	1460015	.	+	.	ID=gene1370;Name=ccoI;gbkey=Gene;gene=ccoI;gene_biotype=protein_coding;locus_tag=azo1339
AM406670.1	EMBL	CDS	1457532	1460015	.	+	0	ID=cds1337;Parent=gene1370;Dbxref=EnsemblGenomes-Gn:azo1339,EnsemblGenomes-Tr:CAL93956,GOA:A1K551,InterPro:IPR001757,InterPro:IPR006121,InterPro:IPR008250,InterPro:IPR018303,InterPro:IPR021993,InterPro:IPR023214,InterPro:IPR023299,InterPro:IPR027256,UniProtKB/TrEMBL:A1K551,NCBI_GP:CAL93956.1;Name=CAL93956.1;Note=36%25 ATPase-IB1_Cu.IPR006416%3B ATPase-IB_hvy.IPR001757%3B ATPase_E1-E2.IPR005834%3B Dehal_like_hydro.IPR008250%3B E1-E2_ATPase_reg. IPR006121%3B HeavyMe_transpt.IPR000695%3B H_ATPase.IPR006191%3B Metal_bind. Pfam:PF00122%3B E1-E2_ATPase%3B 1.PF00403%3B HMA%3B 1.PF00702%3B Hydrolase%3B 1. TMHs:8%3B~Specificity unclear;gbkey=CDS;gene=ccoI;product=putative cation-transporting ATPase;protein_id=CAL93956.1;transl_table=11
AM406670.1	EMBL	gene	1460020	1460229	.	+	.	ID=gene1371;Name=ccoS;gbkey=Gene;gene=ccoS;gene_biotype=protein_coding;locus_tag=azo1340
AM406670.1	EMBL	CDS	1460020	1460229	.	+	0	ID=cds1338;Parent=gene1371;Dbxref=EnsemblGenomes-Gn:azo1340,EnsemblGenomes-Tr:CAL93957,InterPro:IPR004714,UniProtKB/TrEMBL:A1K552,NCBI_GP:CAL93957.1;Name=CAL93957.1;Note=Conserved hypothetical cytochrome oxidase maturation protein. Homology to cco of P.Putida of 42%25 (gnl|keqq|ppu:PP4262(KEGG)). Pfam: Cytochrome oxidase maturation protein cbb3-type. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP)%2Cthe ccoNOQP operon is always found close to a second gene cluster%2C known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex%2Cpossibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase. Interpro: IPR004714 Cytochrome oxidase maturation protein cbb3-type. No signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=ccoS;product=conserved hypothetical cytochrome oxidase maturation protein;protein_id=CAL93957.1;transl_table=11
AM406670.1	EMBL	gene	1460596	1462020	.	+	.	ID=gene1372;Name=ccoN;gbkey=Gene;gene=ccoN;gene_biotype=protein_coding;locus_tag=azo1341
AM406670.1	EMBL	CDS	1460596	1462020	.	+	0	ID=cds1339;Parent=gene1372;Dbxref=EnsemblGenomes-Gn:azo1341,EnsemblGenomes-Tr:CAL93958,GOA:A1K553,InterPro:IPR000883,InterPro:IPR004677,InterPro:IPR023615,InterPro:IPR023616,UniProtKB/TrEMBL:A1K553,NCBI_GP:CAL93958.1;Name=CAL93958.1;Note=Probable cytochrome c oxidase%2C cbb3-type%2C subunit I. Homology to ccoN of R. capsulatus of 62%25 (sprot|COX1_RHOCA). CYTOCHROME C OXIDASE IS THE COMPONENT OF THE RESPIRATORY CHAIN THAT CATALYZES THE REDUCTION OF OXYGEN TO WATER. SUBUNITS 1- 3 FORM THE FUNCTIONAL CORE OF THE ENZYME COMPLEX. CO I IS THE CATALYTIC SUBUNIT OF THE ENZYME. ELECTRONS ORIGINATING IN CYTOCHROME C OR A QUINOL ARE TRANSFERRED TO THE BIMETALLIC CENTER FORMED BY A HIGH-SPIN HEME AND COPPER B. Tigrfam: ccoN: cytochrome c oxidase cbb3-type Pfam: cytochrome c and quinol oxidase polyppeptide no signal peptide 12 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ccoN;product=probable cytochrome c oxidase%2C cbb3-type%2Csubunit I;protein_id=CAL93958.1;transl_table=11
AM406670.1	EMBL	gene	1462036	1462671	.	+	.	ID=gene1373;Name=ccoO;gbkey=Gene;gene=ccoO;gene_biotype=protein_coding;locus_tag=azo1342
AM406670.1	EMBL	CDS	1462036	1462671	.	+	0	ID=cds1340;Parent=gene1373;Dbxref=EnsemblGenomes-Gn:azo1342,EnsemblGenomes-Tr:CAL93959,GOA:A1K554,InterPro:IPR000883,InterPro:IPR003468,InterPro:IPR009056,UniProtKB/TrEMBL:A1K554,NCBI_GP:CAL93959.1;Name=CAL93959.1;Note=Probable cytochrome c oxidase%2C cbb3-type%2C subunit II Homology to ccoO of P. stutzeri of 58%25 (trembl|Q8KS21). CYTOCHROME C OXIDASE IS THE COMPONENT OF THE RESPIRATORY CHAIN THAT CATALYZES THE REDUCTION OF OXYGEN TO WATER. SUBUNITS 1- 3 FORM THE FUNCTIONAL CORE OF THE ENZYME COMPLEX. CO I IS THE CATALYTIC SUBUNIT OF THE ENZYME. ELECTRONS ORIGINATING IN CYTOCHROME C OR A QUINOL ARE TRANSFERRED TO THE BIMETALLIC CENTER FORMED BY A HIGH-SPIN HEME AND COPPER B. Tigrfam: ccoO: cytochrome c oxidase cbb3-type%2C subunit II Pfam: Cytochrome c oxidase%2C mono-heme subunit no signal peptide probable 1 TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=ccoO;product=probable cytochrome c oxidase%2C cbb3-type%2Csubunit II;protein_id=CAL93959.1;transl_table=11
AM406670.1	EMBL	gene	1462691	1462864	.	+	.	ID=gene1374;Name=ccoQ;gbkey=Gene;gene=ccoQ;gene_biotype=protein_coding;locus_tag=azo1343
AM406670.1	EMBL	CDS	1462691	1462864	.	+	0	ID=cds1341;Parent=gene1374;Dbxref=EnsemblGenomes-Gn:azo1343,EnsemblGenomes-Tr:CAL93960,InterPro:IPR008621,UniProtKB/TrEMBL:A1K555,NCBI_GP:CAL93960.1;Name=CAL93960.1;Note=Cbb3-type cytochrome oxidase%2C subunit ccoQ %2C 44%25 Identity to TrEMBL%3BQ8D9I3%2C Q7MKV5%2CQ9KS21. Has PF05545%2CCbb3-type cytochrome oxidase component FixQ%3B IPR008621%3BThis family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process%2C effective symbioses depend on operation of a respiratory chain with a high affinity for O2%2C closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3)%2C which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon.;gbkey=CDS;gene=ccoQ;product=Cbb3-type cytochrome oxidase%2C subuni;protein_id=CAL93960.1;transl_table=11
AM406670.1	EMBL	gene	1462868	1463761	.	+	.	ID=gene1375;Name=ccoP;gbkey=Gene;gene=ccoP;gene_biotype=protein_coding;locus_tag=azo1344
AM406670.1	EMBL	CDS	1462868	1463761	.	+	0	ID=cds1342;Parent=gene1375;Dbxref=EnsemblGenomes-Gn:azo1344,EnsemblGenomes-Tr:CAL93961,GOA:A1K556,InterPro:IPR004678,InterPro:IPR009056,UniProtKB/TrEMBL:A1K556,NCBI_GP:CAL93961.1;Name=CAL93961.1;Note=Probable cytochrome C oxidase subunit III. Homology to ccoP of P. stutzeri of 46%25 (trembl|Q8KS19) CYTOCHROME C OXIDASE IS THE COMPONENT OF THE RESPIRATORY CHAIN THAT CATALYZES THE REDUCTION OF OXYGEN TO WATER. SUBUNITS 1- 3 FORM THE FUNCTIONAL CORE OF THE ENZYME COMPLEX. CO I IS THE CATALYTIC SUBUNIT OF THE ENZYME. ELECTRONS ORIGINATING IN CYTOCHROME C OR A QUINOL ARE TRANSFERRED TO THE BIMETALLIC CENTER FORMED BY A HIGH-SPIN HEME AND COPPER B. Tigrfam: ccoP: cytochrome c oxidase cbb3-type Pfam: cytochrome c no signal peptide probable 2 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ccoP;product=probable cytochrome c oxidase%2C cbb3-type%2Csubunit III;protein_id=CAL93961.1;transl_table=11
AM406670.1	EMBL	gene	1463836	1465260	.	+	.	ID=gene1376;Name=ccoG;gbkey=Gene;gene=ccoG;gene_biotype=protein_coding;locus_tag=azo1345
AM406670.1	EMBL	CDS	1463836	1465260	.	+	0	ID=cds1343;Parent=gene1376;Dbxref=EnsemblGenomes-Gn:azo1345,EnsemblGenomes-Tr:CAL93962,GOA:A1K557,InterPro:IPR001450,InterPro:IPR013783,InterPro:IPR014116,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K557,NCBI_GP:CAL93962.1;Name=CAL93962.1;Note=Putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein. Homology to fixG of R. meliloti of 36%25 (FIXG_RHIME). Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions%3B they fall into several subgroups according to the nature of their iron-sulphur cluster(s). One group%2Coriginally found in bacteria%2C has been termed ''bacterial-type''%2C in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups%2C based on their sequence properties. Most contain at least one conserved domain%2C including four Cys residues that bind to a 4Fe-4S centre. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) probable 5 TMHs . No signal peptide predicted.%3B~Family membership;gbkey=CDS;gene=ccoG;product=putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein;protein_id=CAL93962.1;transl_table=11
AM406670.1	EMBL	gene	1465265	1465780	.	+	.	ID=gene1377;Name=ccoH;gbkey=Gene;gene=ccoH;gene_biotype=protein_coding;locus_tag=azo1346
AM406670.1	EMBL	CDS	1465265	1465780	.	+	0	ID=cds1344;Parent=gene1377;Dbxref=EnsemblGenomes-Gn:azo1346,EnsemblGenomes-Tr:CAL93963,InterPro:IPR008620,UniProtKB/TrEMBL:A1K558,NCBI_GP:CAL93963.1;Name=CAL93963.1;Note=Conserved hypothetical membrane protein. Homology to ebA5136 Azoarcus sp. EbN1 of 51%25 (gnl|keqq|eba:ebA5136(KEGG)). Has PF05751%2C FixH%3BIPR008620%3B This family consists of several Rhizobium FixH like proteins. It has been suggested that suggested that the four proteins FixG%2C FixH%2C FixI%2C and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG. No signal peptide predicted. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=ccoH;product=conserved hypothetical membrane protein.;protein_id=CAL93963.1;transl_table=11
AM406670.1	EMBL	gene	1465806	1465955	.	+	.	ID=gene1378;Name=azo1347;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1347
AM406670.1	EMBL	CDS	1465806	1465955	.	+	0	ID=cds1345;Parent=gene1378;Dbxref=EnsemblGenomes-Gn:azo1347,EnsemblGenomes-Tr:CAL93964,InterPro:IPR021494,UniProtKB/TrEMBL:A1K559,NCBI_GP:CAL93964.1;Name=CAL93964.1;Note=Hypothetical membrane protein. No homology to the data bank. No domain predicted. No signal peptide 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL93964.1;transl_table=11
AM406670.1	EMBL	gene	1465986	1466222	.	+	.	ID=gene1379;Name=azo1348;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1348
AM406670.1	EMBL	CDS	1465986	1466222	.	+	0	ID=cds1346;Parent=gene1379;Dbxref=EnsemblGenomes-Gn:azo1348,EnsemblGenomes-Tr:CAL93965,UniProtKB/TrEMBL:A1K560,NCBI_GP:CAL93965.1;Name=CAL93965.1;Note=Probable transmemebrane Protein%2C 38%25 Idneity to TrEMBL%3BQ8XZW3 Signal P reporting Signal peptide present. TMHMM2 reporting 1 TMH present.;gbkey=CDS;product=probable transmemebrane Protein;protein_id=CAL93965.1;transl_table=11
AM406670.1	EMBL	gene	1466272	1466348	.	-	.	ID=gene1380;Name=tRNA-Arg;gbkey=Gene;gene=tRNA-Arg;gene_biotype=tRNA;locus_tag=azo_tRNA_0028
AM406670.1	EMBL	tRNA	1466272	1466348	.	-	.	ID=rna33;Parent=gene1380;anticodon=(pos:complement(1466312..1466314));gbkey=tRNA;gene=tRNA-Arg;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Arg
AM406670.1	EMBL	exon	1466272	1466348	.	-	.	ID=id34;Parent=rna33;anticodon=(pos:complement(1466312..1466314));gbkey=tRNA;gene=tRNA-Arg;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Arg
AM406670.1	EMBL	gene	1466484	1466927	.	-	.	ID=gene1381;Name=azo1349;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1349
AM406670.1	EMBL	CDS	1466484	1466927	.	-	0	ID=cds1347;Parent=gene1381;Dbxref=EnsemblGenomes-Gn:azo1349,EnsemblGenomes-Tr:CAL93966,GOA:A1K561,InterPro:IPR006015,InterPro:IPR006016,InterPro:IPR014729,UniProtKB/TrEMBL:A1K561,NCBI_GP:CAL93966.1;Name=CAL93966.1;Note=Putative universal stress protein F%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative universal stress protein f;protein_id=CAL93966.1;transl_table=11
AM406670.1	EMBL	gene	1467151	1468884	.	+	.	ID=gene1382;Name=phbC2;gbkey=Gene;gene=phbC2;gene_biotype=protein_coding;locus_tag=azo1350
AM406670.1	EMBL	CDS	1467151	1468884	.	+	0	ID=cds1348;Parent=gene1382;Dbxref=EnsemblGenomes-Gn:azo1350,EnsemblGenomes-Tr:CAL93967,GOA:A1K562,InterPro:IPR000073,InterPro:IPR010941,InterPro:IPR029058,UniProtKB/TrEMBL:A1K562,NCBI_GP:CAL93967.1;Name=CAL93967.1;Note=FUNCTION: Polymerizes d(-)-3-hydroxybutyryl-CoA to create PHB which consists of thousands of hydroxybutyrate molecules linked end to end. PHB serves as an intracellular energy reserve material when cells grow under conditions of nutrient limitation. Entry name :-PHBC_AZOCA Primary accession number:- O66392 Identity:-41%25 InterPro :-IPR000073%3B A/b_hydrolase. Pfam:- PF07167%3B PhaC_N%3B 1. Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=phbC2;product=probable poly-beta-hydroxybutyrate synthase;protein_id=CAL93967.1;transl_table=11
AM406670.1	EMBL	gene	1468907	1469707	.	-	.	ID=gene1383;Name=fnr;gbkey=Gene;gene=fnr;gene_biotype=protein_coding;locus_tag=azo1351
AM406670.1	EMBL	CDS	1468907	1469707	.	-	0	ID=cds1349;Parent=gene1383;Dbxref=EnsemblGenomes-Gn:azo1351,EnsemblGenomes-Tr:CAL93968,GOA:A1K563,InterPro:IPR000595,InterPro:IPR001808,InterPro:IPR011991,InterPro:IPR012318,InterPro:IPR014710,InterPro:IPR018490,UniProtKB/TrEMBL:A1K563,NCBI_GP:CAL93968.1;Name=CAL93968.1;Note=Fumarate and nitrate reduction regulatory protein. Global transcription factor that controls the expression of over 100 target genes in response to anoxia. It facilitates the adaptation to anaerobic growth conditions by regulating the expression of gene products that are involved in anaerobic energy metabolism. When the terminal electron acceptor O(2) is no longer available it represses the synthesis of enzymes involved in aerobic respiration and increases the synthesis of enzymes required for anaerobic respiration. Similar to SWISSPROT: sprot|FNR_ECOLI (39%25 Escherichia coli%2C fumarate and nitrate reduction regulatory protein Fnr) / sprot|ANR_PSEAE (40%25 Pseudomonas aeruginosa%2Ctranscriptional activator protein Anr) InterPro: IPR000595 cNMP_binding. IPR001808 HTH_Crp. Pfam: PF00027 cNMP_binding. PF00325 Crp. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=fnr;product=probable fumarate and nitrate reduction regulatory protein;protein_id=CAL93968.1;transl_table=11
AM406670.1	EMBL	gene	1469756	1471147	.	+	.	ID=gene1384;Name=hemN;gbkey=Gene;gene=hemN;gene_biotype=protein_coding;locus_tag=azo1352
AM406670.1	EMBL	CDS	1469756	1471147	.	+	0	ID=cds1350;Parent=gene1384;Dbxref=EnsemblGenomes-Gn:azo1352,EnsemblGenomes-Tr:CAL93969,GOA:A1K564,InterPro:IPR004558,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR010723,InterPro:IPR023404,UniProtKB/TrEMBL:A1K564,NCBI_GP:CAL93969.1;Name=CAL93969.1;Note=Oxygen-independent coproporphyrinogen III oxidase. ANAEROBIC TRANSFORMATION OF COPROPORPHYRINOGEN-III INTO PROTOPORPHYRINOGEN-IX. hemN: oxygen-independent coproporphyrinogen III oxidase%3B~High confidence in function and specificity;gbkey=CDS;gene=hemN;product=coproporphyrinogen oxidase;protein_id=CAL93969.1;transl_table=11
AM406670.1	EMBL	gene	1471235	1471951	.	+	.	ID=gene1385;Name=azo1353;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1353
AM406670.1	EMBL	CDS	1471235	1471951	.	+	0	ID=cds1351;Parent=gene1385;Dbxref=EnsemblGenomes-Gn:azo1353,EnsemblGenomes-Tr:CAL93970,GOA:A1K565,InterPro:IPR003834,UniProtKB/TrEMBL:A1K565,NCBI_GP:CAL93970.1;Name=CAL93970.1;Note=Conserved hypothetical membrane protein. Homology to ebA5153 of Azoarcus sp. EbN1 of 79%25 (gnl|keqq|eba:ebA5153(KEGG)). Has PF02683%3BCytochrome C biogenesis protein transmembrane region (IPR003834 Ctytoch_TM): This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family. No signal peptide. 5 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL93970.1;transl_table=11
AM406670.1	EMBL	gene	1471968	1472363	.	-	.	ID=gene1386;Name=copY;gbkey=Gene;gene=copY;gene_biotype=protein_coding;locus_tag=azo1354
AM406670.1	EMBL	CDS	1471968	1472363	.	-	0	ID=cds1352;Parent=gene1386;Dbxref=EnsemblGenomes-Gn:azo1354,EnsemblGenomes-Tr:CAL93971,GOA:A1K566,InterPro:IPR000551,InterPro:IPR009061,UniProtKB/TrEMBL:A1K566,NCBI_GP:CAL93971.1;Name=CAL93971.1;Note=Heavy metal dependent transcription regulator 2. TRANSCRIPTIONAL REGULATOR INVOLVED IN ACID TOLERANCE. BINDS COPPER (By similarity). It contains a n-terminal dna binding region and a c- terminal metal binding region (by similarity). 35%25 HTH_MerR.IPR009061%3B Putativ_DNA_bind. Pfam:PF00376%3B MerR%3B 1. TIGR00372: conserved hypothetical protei%3B~High confidence in function and specificity;gbkey=CDS;gene=copY;product=putative regulatory protein;protein_id=CAL93971.1;transl_table=11
AM406670.1	EMBL	gene	1472442	1474877	.	+	.	ID=gene1387;Name=copA;gbkey=Gene;gene=copA;gene_biotype=protein_coding;locus_tag=azo1355
AM406670.1	EMBL	CDS	1472442	1474877	.	+	0	ID=cds1353;Parent=gene1387;Dbxref=EnsemblGenomes-Gn:azo1355,EnsemblGenomes-Tr:CAL93972,GOA:A1K567,InterPro:IPR001757,InterPro:IPR006121,InterPro:IPR006122,InterPro:IPR008250,InterPro:IPR017969,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023299,InterPro:IPR027256,UniProtKB/TrEMBL:A1K567,NCBI_GP:CAL93972.1;Name=CAL93972.1;Note=CopA: copper transporting P-type ATPase protein%2Cinvolved in the uptake and metabolism of copper. 44%25 ATPase-IB1_Cu.IPR006416%3B ATPase-IB_hvy.IPR001757%3B ATPase_E1-E2.IPR001756%3B Cu_ATPase.IPR005834%3B Dehal_like_hydro.IPR008250%3B E1-E2_ATPase_reg.IPR006121%3B HeavyMe_transpt.IPR006191%3B Metal_bind. Pfam:PF00122%3B E1-E2_ATPase%3B 1.PF00403%3B HMA%3B 1.PF00702%3B Hydrolase%3B 1. TIGR00003: copper-ion-binding protein. TMHs:8.%3B~High confidence in function and specificity;gbkey=CDS;gene=copA;product=putative Cu2+ transporting ATPase;protein_id=CAL93972.1;transl_table=11
AM406670.1	EMBL	gene	1474902	1475111	.	+	.	ID=gene1388;Name=copZ;gbkey=Gene;gene=copZ;gene_biotype=protein_coding;locus_tag=azo1356
AM406670.1	EMBL	CDS	1474902	1475111	.	+	0	ID=cds1354;Parent=gene1388;Dbxref=EnsemblGenomes-Gn:azo1356,EnsemblGenomes-Tr:CAL93973,GOA:A1K568,InterPro:IPR001802,InterPro:IPR006121,InterPro:IPR017969,UniProtKB/TrEMBL:A1K568,NCBI_GP:CAL93973.1;Name=CAL93973.1;Note=Conserved hypothetical copper chaperon. Homology to copZ of copZ Azoarcus sp. EbN1 of 66%25. Pfam: Heavy-metal-associated domain. Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. Tigrfam: TIGR00003: copper-ion-binding protein. No signal peptide. No TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;gene=copZ;product=conserved hypothetical copper chaperon;protein_id=CAL93973.1;transl_table=11
AM406670.1	EMBL	gene	1475126	1477969	.	-	.	ID=gene1389;Name=azo1357;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1357
AM406670.1	EMBL	CDS	1475126	1477969	.	-	0	ID=cds1355;Parent=gene1389;Dbxref=EnsemblGenomes-Gn:azo1357,EnsemblGenomes-Tr:CAL93974,GOA:A1K569,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR004010,InterPro:IPR029787,UniProtKB/TrEMBL:A1K569,NCBI_GP:CAL93974.1;Name=CAL93974.1;Note=EAL/GGDEF/PAS/PAC-domain containing signalling protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=EAL/GGDEF/PAS/PAC-domain containing signalling protein;protein_id=CAL93974.1;transl_table=11
AM406670.1	EMBL	gene	1478241	1478768	.	+	.	ID=gene1390;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;locus_tag=azo1358
AM406670.1	EMBL	CDS	1478241	1478768	.	+	0	ID=cds1356;Parent=gene1390;Dbxref=EnsemblGenomes-Gn:azo1358,EnsemblGenomes-Tr:CAL93975,GOA:A1K570,InterPro:IPR008162,UniProtKB/TrEMBL:A1K570,NCBI_GP:CAL93975.1;Name=CAL93975.1;Note=Probable inorganic pyrophosphatase. Homology to ppa of E. coli of 66%25 (sprot|IPYR_ECOLI). CATALYTIC ACTIVITY Diphosphate + H(2)O %3D 2 phosphate. Pfam: Inorganic pyrophospatease no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ppa;product=probable inorganic pyrophosphatase;protein_id=CAL93975.1;transl_table=11
AM406670.1	EMBL	gene	1478841	1479977	.	-	.	ID=gene1391;Name=azo1359;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1359
AM406670.1	EMBL	CDS	1478841	1479977	.	-	0	ID=cds1357;Parent=gene1391;Dbxref=EnsemblGenomes-Gn:azo1359,EnsemblGenomes-Tr:CAL93976,InterPro:IPR007434,InterPro:IPR016181,UniProtKB/TrEMBL:A1K571,NCBI_GP:CAL93976.1;Name=CAL93976.1;Note=Conserved hypothetical protein. Homology to BB3581 of B.bronchiseptica of 53%25 (tremble:Q7WGK8). Has PF04339:(IPR00743)Protein of unknown function%2C DUF482%3BThis family contains several proteins of uncharacterised function. NO signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93976.1;transl_table=11
AM406670.1	EMBL	gene	1480139	1481755	.	+	.	ID=gene1392;Name=nadE;gbkey=Gene;gene=nadE;gene_biotype=protein_coding;locus_tag=azo1360
AM406670.1	EMBL	CDS	1480139	1481755	.	+	0	ID=cds1358;Parent=gene1392;Dbxref=EnsemblGenomes-Gn:azo1360,EnsemblGenomes-Tr:CAL93977,GOA:A1K572,InterPro:IPR003010,InterPro:IPR003694,InterPro:IPR014445,InterPro:IPR014729,InterPro:IPR022310,UniProtKB/TrEMBL:A1K572,NCBI_GP:CAL93977.1;Name=CAL93977.1;Note=Probable glutamine- or nh3-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+) synthase [glutamine-hydrolyzing]). CAN USE BOTH GLUTAMINE OR AMMONIA AS A NITROGEN SOURCE (BY SIMILARITY). InterPro: NAD+ synthase nadE: NAD+ synthetase%3B~High confidence in function and specificity;gbkey=CDS;gene=nadE;product=NAD(+) synthase (glutamine-hydrolyzing);protein_id=CAL93977.1;transl_table=11
AM406670.1	EMBL	gene	1481805	1482143	.	+	.	ID=gene1393;Name=glnB;gbkey=Gene;gene=glnB;gene_biotype=protein_coding;locus_tag=azo1361
AM406670.1	EMBL	CDS	1481805	1482143	.	+	0	ID=cds1359;Parent=gene1393;Dbxref=EnsemblGenomes-Gn:azo1361,EnsemblGenomes-Tr:CAL93978,GOA:Q9EZQ2,InterPro:IPR002187,InterPro:IPR002332,InterPro:IPR011322,InterPro:IPR015867,InterPro:IPR017918,UniProtKB/TrEMBL:Q9EZQ2,NCBI_GP:CAL93978.1;Name=CAL93978.1;Note=PII-like signal transmitter proteins are involved in the regulation of ammonium assimilation and nitrogen fixation. The PII-like proteins differed from each other in details of N-sensing. They were covalently modified by uridylylation upon nitrogen limitation. Similar to trembl|Q9EZQ2 (100%25) and to trembl|Q8XWX5 (82%25). Pfam: Nitrogen regulatory protein P-II%3B~High confidence in function and specificity;gbkey=CDS;gene=glnB;product=PII-like signal transmitter protein GlnB;protein_id=CAL93978.1;transl_table=11
AM406670.1	EMBL	gene	1482173	1483225	.	-	.	ID=gene1394;Name=azo1362;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1362
AM406670.1	EMBL	CDS	1482173	1483225	.	-	0	ID=cds1360;Parent=gene1394;Dbxref=EnsemblGenomes-Gn:azo1362,EnsemblGenomes-Tr:CAL93979,InterPro:IPR002625,UniProtKB/TrEMBL:A1K574,NCBI_GP:CAL93979.1;Name=CAL93979.1;Note=Hypothetical protein. no homology of the entire protein with the data bank. Pfam: Smr domain InterPro: Smr domain This family includes the Smr (Small MutS Related) proteins%2C and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2. no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein;protein_id=CAL93979.1;transl_table=11
AM406670.1	EMBL	gene	1483241	1484191	.	-	.	ID=gene1395;Name=trxB2;gbkey=Gene;gene=trxB2;gene_biotype=protein_coding;locus_tag=azo1363
AM406670.1	EMBL	CDS	1483241	1484191	.	-	0	ID=cds1361;Parent=gene1395;Dbxref=EnsemblGenomes-Gn:azo1363,EnsemblGenomes-Tr:CAL93980,GOA:A1K575,InterPro:IPR000103,InterPro:IPR001327,InterPro:IPR005982,InterPro:IPR008255,InterPro:IPR013027,InterPro:IPR023753,UniProtKB/TrEMBL:A1K575,NCBI_GP:CAL93980.1;Name=CAL93980.1;Note=Thioredoxin-disulfide reductase(EC 1.8.1.9). Homology to trxB of E. coli of 71%25 (sprot|TRXB_ECOLI). Catalyse the reaction: thioredoxin + nadp(+) %3D thioredoxin disulfide + nadph Pfam: Pyridine nucleotide-disulphide oxidoreductase signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=trxB2;product=thioredoxin-disulfide reductase;protein_id=CAL93980.1;transl_table=11
AM406670.1	EMBL	gene	1484423	1485094	.	+	.	ID=gene1396;Name=vfr;gbkey=Gene;gene=vfr;gene_biotype=protein_coding;locus_tag=azo1364
AM406670.1	EMBL	CDS	1484423	1485094	.	+	0	ID=cds1362;Parent=gene1396;Dbxref=EnsemblGenomes-Gn:azo1364,EnsemblGenomes-Tr:CAL93981,GOA:A1K576,InterPro:IPR000595,InterPro:IPR001808,InterPro:IPR002373,InterPro:IPR011991,InterPro:IPR012318,InterPro:IPR014710,InterPro:IPR018488,InterPro:IPR018490,UniProtKB/TrEMBL:A1K576,NCBI_GP:CAL93981.1;Name=CAL93981.1;Note=Probable cyclic amp receptor-like protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=vfr;product=probable cyclic AMP receptor protein;protein_id=CAL93981.1;transl_table=11
AM406670.1	EMBL	gene	1485243	1487531	.	+	.	ID=gene1397;Name=FtsK;gbkey=Gene;gene=FtsK;gene_biotype=protein_coding;locus_tag=azo1365
AM406670.1	EMBL	CDS	1485243	1487531	.	+	0	ID=cds1363;Parent=gene1397;Dbxref=EnsemblGenomes-Gn:azo1365,EnsemblGenomes-Tr:CAL93982,GOA:A1K577,InterPro:IPR002543,InterPro:IPR018541,InterPro:IPR025199,InterPro:IPR027417,UniProtKB/TrEMBL:A1K577,NCBI_GP:CAL93982.1;Name=CAL93982.1;Note=DNA translocase ftsK 2. InterPro: FtsK/SpoIIIE family%3B~High confidence in function and specificity;gbkey=CDS;gene=FtsK;product=putative cell division protein;protein_id=CAL93982.1;transl_table=11
AM406670.1	EMBL	gene	1487528	1488205	.	+	.	ID=gene1398;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=azo1366
AM406670.1	EMBL	CDS	1487528	1488205	.	+	0	ID=cds1364;Parent=gene1398;Dbxref=EnsemblGenomes-Gn:azo1366,EnsemblGenomes-Tr:CAL93983,GOA:A1K578,InterPro:IPR004564,InterPro:IPR018323,InterPro:IPR029046,UniProtKB/TrEMBL:A1K578,NCBI_GP:CAL93983.1;Name=CAL93983.1;Note=Putative outer-membrane lipoprotein carrier protein. Homology to lolA of E. coli of 25%25 (sprot|LOLA_ECOLI) Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (By similarity). Pfam: outer membrane lipoprotein carrier protein LolA Tigrfam: lolA: outer membrane lipoprotein carrier singal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=lolA;product=putative outer membrane lipoprotein carrier protein;protein_id=CAL93983.1;transl_table=11
AM406670.1	EMBL	gene	1488217	1489554	.	+	.	ID=gene1399;Name=azo1367;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1367
AM406670.1	EMBL	CDS	1488217	1489554	.	+	0	ID=cds1365;Parent=gene1399;Dbxref=EnsemblGenomes-Gn:azo1367,EnsemblGenomes-Tr:CAL93984,GOA:A1K579,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR008921,InterPro:IPR021886,InterPro:IPR027417,UniProtKB/TrEMBL:A1K579,NCBI_GP:CAL93984.1;Name=CAL93984.1;Note=Hypothetical protein CBU1189. InterPro: AAA-protein (ATPases associated with various cellular activities) ruvB: Holliday junction DNA helicase R.%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93984.1;transl_table=11
AM406670.1	EMBL	gene	1489593	1489856	.	-	.	ID=gene1400;Name=azo1368;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1368
AM406670.1	EMBL	CDS	1489593	1489856	.	-	0	ID=cds1366;Parent=gene1400;Dbxref=EnsemblGenomes-Gn:azo1368,EnsemblGenomes-Tr:CAL93985,UniProtKB/TrEMBL:A1K580,NCBI_GP:CAL93985.1;Name=CAL93985.1;Note=Conserved hypothetical protein. Homology to ebA7035 of Azoarcus sp. EbN1 of 79%25 (gnl|keqq|eba:ebA7035(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93985.1;transl_table=11
AM406670.1	EMBL	gene	1490125	1491417	.	+	.	ID=gene1401;Name=azo1369;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1369
AM406670.1	EMBL	CDS	1490125	1491417	.	+	0	ID=cds1367;Parent=gene1401;Dbxref=EnsemblGenomes-Gn:azo1369,EnsemblGenomes-Tr:CAL93986,GOA:A1K581,InterPro:IPR002314,InterPro:IPR002317,InterPro:IPR006195,InterPro:IPR010978,InterPro:IPR015866,NCBI_GP:CAL93986.1;Name=CAL93986.1;Note=Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).%3B~High confidence in function and specificity;gbkey=CDS;product=SerS protein;protein_id=CAL93986.1;transl_table=11
AM406670.1	EMBL	gene	1491592	1493208	.	+	.	ID=gene1402;Name=azo1370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1370
AM406670.1	EMBL	CDS	1491592	1493208	.	+	0	ID=cds1368;Parent=gene1402;Dbxref=EnsemblGenomes-Gn:azo1370,EnsemblGenomes-Tr:CAL93987,GOA:A1K582,InterPro:IPR000014,InterPro:IPR003660,InterPro:IPR004089,UniProtKB/TrEMBL:A1K582,NCBI_GP:CAL93987.1;Name=CAL93987.1;Note=Aerotaxis receptor protein%2C%3B~Specificity unclear;gbkey=CDS;product=putative aerotaxis receptor protein;protein_id=CAL93987.1;transl_table=11
AM406670.1	EMBL	gene	1493285	1495105	.	-	.	ID=gene1403;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=azo1371
AM406670.1	EMBL	CDS	1493285	1495105	.	-	0	ID=cds1369;Parent=gene1403;Dbxref=EnsemblGenomes-Gn:azo1371,EnsemblGenomes-Tr:CAL93988,GOA:A1K583,InterPro:IPR000089,InterPro:IPR001327,InterPro:IPR003016,InterPro:IPR004099,InterPro:IPR006258,InterPro:IPR011053,InterPro:IPR012999,InterPro:IPR013027,InterPro:IPR016156,InterPro:IPR023753,UniProtKB/TrEMBL:A1K583,NCBI_GP:CAL93988.1;Name=CAL93988.1;Note=Dihydrolipoamide dehydrogenase. Homology to lpdA of N. meningitides of 70%25 (trembl|Q59099). THE BRANCHED-CHAIN ALPHA-KETO DEHYDROGENASE COMPLEX CATALYZES THE OVERALL CONVERSION OF ALPHA-KETO ACIDS TO ACYL-COA AND CO(2). IT CONTAINS MULTIPLE COPIES OF 3 ENZYMATIC COMPONENTS: BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE (E1) LIPOAMIDE ACYLTRANSFERASE (E2) AND LIPOAMIDE DEHYDROGENASE (E3) (BY SIMILARITY). InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327)%3B Pyridine nucleotide-disulphide oxidoreductase%2C classI (IPR001100)%3B biotin/Lipoyl attachment (IPR000089)%3B Pyridine nucleotide-disulphide oxidoreductase dimersiation domain (IPR004099)%3B NAD binding site (IPR000205)%3B 2-oxo acid dehydrogenase acetyltransferase%2C classI (IPR003016) Pfam: Biotin-requiring enzyme%3B Pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide oxidoreductase dimersation domain no TMHs no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=lpdA;product=dihydrolipoamide dehydrogenase;protein_id=CAL93988.1;transl_table=11
AM406670.1	EMBL	gene	1495116	1496804	.	-	.	ID=gene1404;Name=pdhB;gbkey=Gene;gene=pdhB;gene_biotype=protein_coding;locus_tag=azo1372
AM406670.1	EMBL	CDS	1495116	1496804	.	-	0	ID=cds1370;Parent=gene1404;Dbxref=EnsemblGenomes-Gn:azo1372,EnsemblGenomes-Tr:CAL93989,GOA:A1K584,InterPro:IPR000089,InterPro:IPR001078,InterPro:IPR003016,InterPro:IPR004167,InterPro:IPR006256,InterPro:IPR011053,InterPro:IPR023213,UniProtKB/TrEMBL:A1K584,NCBI_GP:CAL93989.1;Name=CAL93989.1;Note=Probable dihydrolipoamide acetyltransferase. Homology to pdhB of A. eutrophus of 62%25 (sprot|ODP2_ALCEU) THE PYRUVATE DEHYDROGENASE COMPLEX CATALYZES THE OVERALL CONVERSION OF PYRUVATE TO ACETYL-COA %26 CO(2). IT CONTAINS MULTIPLE COPIES OF THREE ENZYMATIC COMPONENTS: PYRUVATE DEHYDROGENASE (E1) DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2) %26 LIPOAMIDE DEHYDROGENASE (E3) (BY SIMILARITY). InterPro: 2-Oxo acid dehydrogenase acyltransferase catalytic domain (IPR001078)%3B Type I antifreeze protein (IPR000104)%3B Biotin/Lipoyl attachment (IPR000089)%3B E3 binding domain (IPR004167)%3B 2-Oxo acid dehydrogenase acyltransferase component lipoyl binding site (IPR003016) Pfam: Biotin-requiring enzyme%3B E3 binding domain%3B 2-oxo dehydrogenase acyltransferase Tigrfam: BCCP: acetyl-CoA carboxylase biotin carboxyl carrier protein no TMHs no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=pdhB;product=probable dihydrolipoamide acetyltransferase;protein_id=CAL93989.1;transl_table=11
AM406670.1	EMBL	gene	1496825	1499506	.	-	.	ID=gene1405;Name=pdhA;gbkey=Gene;gene=pdhA;gene_biotype=protein_coding;locus_tag=azo1373
AM406670.1	EMBL	CDS	1496825	1499506	.	-	0	ID=cds1371;Parent=gene1405;Dbxref=EnsemblGenomes-Gn:azo1373,EnsemblGenomes-Tr:CAL93990,GOA:A1K585,InterPro:IPR001849,InterPro:IPR004660,InterPro:IPR005474,InterPro:IPR009014,InterPro:IPR029061,UniProtKB/TrEMBL:A1K585,NCBI_GP:CAL93990.1;Name=CAL93990.1;Note=Pyruvate dehydrogenase. Homology to pdhA of A. eutropus of 77%25 (sprot|ODP1_ALCEU). THE PYRUVATE DEHYDROGENASE COMPLEX CATALYZES THE OVERALL CONVERSION OF PYRUVATE TO ACETYL-COA %26 CO(2). IT CONTAINS MULTIPLE COPIES OF THREE ENZYMATIC COMPONENTS: PYRUVATE DEHYDROGENASE (E1) DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2) %26 LIPOAMIDE DEHYDROGENASE (E3) (BY SIMILARITY). Tigrfam: aceE: 2-oxo-acid dehydrogenase E1 comp no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=pdhA;product=pyruvate dehydrogenase;protein_id=CAL93990.1;transl_table=11
AM406670.1	EMBL	gene	1499913	1501118	.	-	.	ID=gene1406;Name=azo1374;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1374
AM406670.1	EMBL	CDS	1499913	1501118	.	-	0	ID=cds1372;Parent=gene1406;Dbxref=EnsemblGenomes-Gn:azo1374,EnsemblGenomes-Tr:CAL93991,GOA:A1K586,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1K586,NCBI_GP:CAL93991.1;Name=CAL93991.1;Note=This family includes extracellular ligand binding domains of a wide range of receptors and it also includes the bacterial amino acid binding proteins of known structure. Similar to tremblnew|AAR35111 (24%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Family membership;gbkey=CDS;product=extracellular ligand binding protein;protein_id=CAL93991.1;transl_table=11
AM406670.1	EMBL	gene	1501285	1503999	.	+	.	ID=gene1407;Name=azo1375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1375
AM406670.1	EMBL	CDS	1501285	1503999	.	+	0	ID=cds1373;Parent=gene1407;Dbxref=EnsemblGenomes-Gn:azo1375,EnsemblGenomes-Tr:CAL93992,GOA:A1K587,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR013655,UniProtKB/TrEMBL:A1K587,NCBI_GP:CAL93992.1;Name=CAL93992.1;Note=Putative two-component sensor kinase%2C%3B~Specificity unclear;gbkey=CDS;product=putative two-component sensor kinase;protein_id=CAL93992.1;transl_table=11
AM406670.1	EMBL	gene	1503974	1504612	.	+	.	ID=gene1408;Name=fixJ2;gbkey=Gene;gene=fixJ2;gene_biotype=protein_coding;locus_tag=azo1376
AM406670.1	EMBL	CDS	1503974	1504612	.	+	0	ID=cds1374;Parent=gene1408;Dbxref=EnsemblGenomes-Gn:azo1376,EnsemblGenomes-Tr:CAL93993,GOA:A1K588,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K588,NCBI_GP:CAL93993.1;Name=CAL93993.1;Note=Probable transcriptional regulatory protein%2C%3B~Specificity unclear;gbkey=CDS;gene=fixJ2;product=probable transcriptional regulatory protein;protein_id=CAL93993.1;transl_table=11
AM406670.1	EMBL	gene	1504697	1505572	.	+	.	ID=gene1409;Name=folD;gbkey=Gene;gene=folD;gene_biotype=protein_coding;locus_tag=azo1377
AM406670.1	EMBL	CDS	1504697	1505572	.	+	0	ID=cds1375;Parent=gene1409;Dbxref=EnsemblGenomes-Gn:azo1377,EnsemblGenomes-Tr:CAL93994,GOA:A1K589,InterPro:IPR000672,InterPro:IPR016040,InterPro:IPR020630,InterPro:IPR020631,InterPro:IPR020867,NCBI_GP:CAL93994.1;Name=CAL93994.1;Note=FolD bifunctional protein [Includes: Methylenetetrahydrofolate dehydrogenase%3B Methenyltetrahydrofolate cyclohydrolase]. InterPro: Tetrahydrofolate dehydrogenase/cyclohydrolase%3B~High confidence in function and specificity;gbkey=CDS;gene=folD;product=methylenetetrahydrofolate dehydrogenase (NADP+) / Methenyltetrahydrofolate cyclohydrolase;protein_id=CAL93994.1;transl_table=11
AM406670.1	EMBL	gene	1505580	1506092	.	+	.	ID=gene1410;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=azo1378
AM406670.1	EMBL	CDS	1505580	1506092	.	+	0	ID=cds1376;Parent=gene1410;Dbxref=EnsemblGenomes-Gn:azo1378,EnsemblGenomes-Tr:CAL93995,GOA:A1K590,InterPro:IPR000031,InterPro:IPR024694,UniProtKB/TrEMBL:A1K590,NCBI_GP:CAL93995.1;Name=CAL93995.1;Note=Phosphoribosylaminoimidazole carboxylase(AIR carboxylase) (AIRC). InterPro: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase%3B~High confidence in function and specificity;gbkey=CDS;gene=purE;product=phosphoribosylaminoimidazole carboxylase;protein_id=CAL93995.1;transl_table=11
AM406670.1	EMBL	gene	1506220	1507401	.	+	.	ID=gene1411;Name=purK;gbkey=Gene;gene=purK;gene_biotype=protein_coding;locus_tag=azo1379
AM406670.1	EMBL	CDS	1506220	1507401	.	+	0	ID=cds1377;Parent=gene1411;Dbxref=EnsemblGenomes-Gn:azo1379,EnsemblGenomes-Tr:CAL93996,GOA:A1K591,InterPro:IPR003135,InterPro:IPR005875,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,UniProtKB/TrEMBL:A1K591,NCBI_GP:CAL93996.1;Name=CAL93996.1;Note=Phosphoribosylaminoimidazole carboxylase (AIR carboxylase) (AIRC)%3B~High confidence in function and specificity;gbkey=CDS;gene=purK;product=Official Name Phosphoribosylaminoimidazole carboxylase;protein_id=CAL93996.1;transl_table=11
AM406670.1	EMBL	gene	1507398	1508429	.	+	.	ID=gene1412;Name=azo1380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1380
AM406670.1	EMBL	CDS	1507398	1508429	.	+	0	ID=cds1378;Parent=gene1412;Dbxref=EnsemblGenomes-Gn:azo1380,EnsemblGenomes-Tr:CAL93997,GOA:A1K592,InterPro:IPR005145,InterPro:IPR006070,InterPro:IPR010923,InterPro:IPR017945,UniProtKB/TrEMBL:A1K592,NCBI_GP:CAL93997.1;Name=CAL93997.1;Note=Hypothetical protein ywlC. TIGR00057: Sua5/YciO/YrdC/YwlC family%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL93997.1;transl_table=11
AM406670.1	EMBL	gene	1508492	1508567	.	+	.	ID=gene1413;Name=tRNA-Ala;gbkey=Gene;gene=tRNA-Ala;gene_biotype=tRNA;locus_tag=azo_tRNA_0029
AM406670.1	EMBL	tRNA	1508492	1508567	.	+	.	ID=rna34;Parent=gene1413;anticodon=(pos:1508525..1508527);gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	exon	1508492	1508567	.	+	.	ID=id35;Parent=rna34;anticodon=(pos:1508525..1508527);gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	gene	1508792	1509934	.	+	.	ID=gene1414;Name=carA;gbkey=Gene;gene=carA;gene_biotype=protein_coding;locus_tag=azo1381
AM406670.1	EMBL	CDS	1508792	1509934	.	+	0	ID=cds1379;Parent=gene1414;Dbxref=EnsemblGenomes-Gn:azo1381,EnsemblGenomes-Tr:CAL93998,GOA:A1K593,InterPro:IPR002474,InterPro:IPR006274,InterPro:IPR017926,InterPro:IPR029062,UniProtKB/TrEMBL:A1K593,NCBI_GP:CAL93998.1;Name=CAL93998.1;Note=Carbamoyl-phosphate synthase (glutamine-hydrolyzing) small chain%3B~High confidence in function and specificity;gbkey=CDS;gene=carA;product=Carbamoyl-phosphate synthase (glutamine-hydrolyzing);protein_id=CAL93998.1;transl_table=11
AM406670.1	EMBL	gene	1509989	1513216	.	+	.	ID=gene1415;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=azo1382
AM406670.1	EMBL	CDS	1509989	1513216	.	+	0	ID=cds1380;Parent=gene1415;Dbxref=EnsemblGenomes-Gn:azo1382,EnsemblGenomes-Tr:CAL93999,GOA:A1K594,InterPro:IPR005479,InterPro:IPR005480,InterPro:IPR005481,InterPro:IPR005483,InterPro:IPR006275,InterPro:IPR011607,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,UniProtKB/TrEMBL:A1K594,NCBI_GP:CAL93999.1;Name=CAL93999.1;Note=Carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain InterPro: Carbamoyl-phosphate synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=carB;product=Carbamoyl-phosphate synthase (glutamine-hydrolyzing);protein_id=CAL93999.1;transl_table=11
AM406670.1	EMBL	gene	1513213	1513689	.	+	.	ID=gene1416;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=azo1383
AM406670.1	EMBL	CDS	1513213	1513689	.	+	0	ID=cds1381;Parent=gene1416;Dbxref=EnsemblGenomes-Gn:azo1383,EnsemblGenomes-Tr:CAL94000,GOA:A1K595,InterPro:IPR001437,InterPro:IPR006359,InterPro:IPR018151,InterPro:IPR022691,InterPro:IPR023459,InterPro:IPR028624,UniProtKB/TrEMBL:A1K595,NCBI_GP:CAL94000.1;Name=CAL94000.1;Note=Transcription elongation factor GreA Transcription elongation factor greA (Transcript cleavage factor greA). Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as greA or greB allows the resumption of elongation from the new 3terminus. GreA releases sequences of 2 to 3 nucleotides (By similarity). Belongs to the greA/greB family. 58%25 1. PF03449 GreA_GreB_N%3B 1. TIGFRAM TIGR01462%3B greA%3B 1. PurN: phosphoribosylglycinamide formylt%3B~High confidence in function and specificity;gbkey=CDS;gene=greA;product=putative transcription elongation factor;protein_id=CAL94000.1;transl_table=11
AM406670.1	EMBL	gene	1513701	1514171	.	+	.	ID=gene1417;Name=azo1384;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1384
AM406670.1	EMBL	CDS	1513701	1514171	.	+	0	ID=cds1382;Parent=gene1417;Dbxref=EnsemblGenomes-Gn:azo1384,EnsemblGenomes-Tr:CAL94001,InterPro:IPR025423,UniProtKB/TrEMBL:A1K596,NCBI_GP:CAL94001.1;Name=CAL94001.1;Note=Conserved hypothetical membrane protein. Homology to RS03781 of Ralstonia solanacearum of 39%25 (trembl|Q8XZ81(SRS)). no domains predicted. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94001.1;transl_table=11
AM406670.1	EMBL	gene	1514202	1514663	.	-	.	ID=gene1418;Name=azo1385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1385
AM406670.1	EMBL	CDS	1514202	1514663	.	-	0	ID=cds1383;Parent=gene1418;Dbxref=EnsemblGenomes-Gn:azo1385,EnsemblGenomes-Tr:CAL94002,GOA:A1K597,InterPro:IPR001890,UniProtKB/TrEMBL:A1K597,NCBI_GP:CAL94002.1;Name=CAL94002.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94002.1;transl_table=11
AM406670.1	EMBL	gene	1514707	1515324	.	+	.	ID=gene1419;Name=FtsJ;gbkey=Gene;gene=FtsJ;gene_biotype=protein_coding;locus_tag=azo1386
AM406670.1	EMBL	CDS	1514707	1515324	.	+	0	ID=cds1384;Parent=gene1419;Dbxref=EnsemblGenomes-Gn:azo1386,EnsemblGenomes-Tr:CAL94003,GOA:A1K598,InterPro:IPR002877,InterPro:IPR015507,InterPro:IPR029063,NCBI_GP:CAL94003.1;Name=CAL94003.1;Note=Ribosomal RNA large subunit methyltransferase J (EC 2.1.1.-) (rRNA (uridine-2-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) (Cell division protein ftsJ homolog). Specifically methylates the uridine in position 2552 of 23S rRNA in the 50S particle%3B~High confidence in function and specificity;gbkey=CDS;gene=FtsJ;product=ribosomal RNA large subunit methyltransferase j;protein_id=CAL94003.1;transl_table=11
AM406670.1	EMBL	gene	1515440	1517332	.	+	.	ID=gene1420;Name=FtsH;gbkey=Gene;gene=FtsH;gene_biotype=protein_coding;locus_tag=azo1387
AM406670.1	EMBL	CDS	1515440	1517332	.	+	0	ID=cds1385;Parent=gene1420;Dbxref=EnsemblGenomes-Gn:azo1387,EnsemblGenomes-Tr:CAL94004,GOA:A1K599,InterPro:IPR000642,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR003960,InterPro:IPR005936,InterPro:IPR011546,InterPro:IPR027417,UniProtKB/TrEMBL:A1K599,NCBI_GP:CAL94004.1;Name=CAL94004.1;Note=Cell division protease ftsH. Homology to ftsH of E. coli of 64%25 (SWISSPROT:FTSH_ECOLI) SEEMS TO ACT AS AN ATP-DEPENDENT ZINC METALLOPEPTIDASE. INVOLVED IN THE DEGRADATION OF SIGMA-32. DEGRADES CARBOXY- TERMINAL-TAGGED CYTOPLASMIC PROTEINS. THESE PROTEINS ARE TAGGED WITH AN 11-AMINO-ACID NONPOLAR DESTABILIZING TAIL VIA A MECHANISM INVOLVING THE 10SA (SSRA) STABLE RNA (By similarity). Pfam: ATPase family associated with various celluar activities%3BPeptidase family M41 probable signal peptide probable 1 TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=FtsH;product=probable cell division protein FtsH;protein_id=CAL94004.1;transl_table=11
AM406670.1	EMBL	gene	1517394	1518215	.	+	.	ID=gene1421;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=azo1388
AM406670.1	EMBL	CDS	1517394	1518215	.	+	0	ID=cds1386;Parent=gene1421;Dbxref=EnsemblGenomes-Gn:azo1388,EnsemblGenomes-Tr:CAL94005,GOA:A1K5A0,InterPro:IPR000489,InterPro:IPR006390,InterPro:IPR011005,UniProtKB/TrEMBL:A1K5A0,NCBI_GP:CAL94005.1;Name=CAL94005.1;Note=Dihydropteroate synthase (EC 2.5.1.15) (DHPS) (Dihydropteroate pyrophosphorylase). DHPS catalyzes the formation of the immediate precursor of folic acid. It is implicated in resistance to sulfonamide (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=folP;product=dihydropteroate synthase;protein_id=CAL94005.1;transl_table=11
AM406670.1	EMBL	gene	1518249	1519604	.	+	.	ID=gene1422;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=azo1389
AM406670.1	EMBL	CDS	1518249	1519604	.	+	0	ID=cds1387;Parent=gene1422;Dbxref=EnsemblGenomes-Gn:azo1389,EnsemblGenomes-Tr:CAL94006,GOA:A1K5A1,InterPro:IPR005841,InterPro:IPR005843,InterPro:IPR005844,InterPro:IPR005845,InterPro:IPR005846,InterPro:IPR006352,InterPro:IPR016055,InterPro:IPR016066,NCBI_GP:CAL94006.1;Name=CAL94006.1;Note=Phosphoglucomutase/phosphomannomutase protein%2C MrsA homolog. Involved in the interconversion of glucose-1-phosphate to glucose-6-phosphate or mannose-1-phosphate to mannose-6-phosphate. The enzyme is involved in the pathway for bacterial cell-wall peptidoglycan and lipopolysaccharide biosyntheses%2C being an essential step in the pathway for UDP-N-acetylglucosamine biosynthesis. Similar to the phosphoglucosamine mutase%2C GlmM protein from E.coli. GLMM_ECOLI:P31120.InterPro:IPR006352%3B GlmM.IPR005841%3B PG/PMM_mutase.IPR005844%3BPG_PMM_ABAI.IPR005845%3B PG_PMM_ABAII.IPR005846%3B PG_PMM_ABAIII.IPR005843%3B PG_PMM_C. Pfam:PF02878%3B PGM_PMM_I%3B 1.PF02879%3B PGM_PMM_II%3B 1.PF02880%3B PGM_PMM_III%3B 1.PF00408%3B PGM_PMM_IV%3B 1. TIGR01455%3B glmM%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=glmM;product=putative phosphoglucomutase;protein_id=CAL94006.1;transl_table=11
AM406670.1	EMBL	gene	1519717	1520757	.	+	.	ID=gene1423;Name=pstS2;gbkey=Gene;gene=pstS2;gene_biotype=protein_coding;locus_tag=azo1390
AM406670.1	EMBL	CDS	1519717	1520757	.	+	0	ID=cds1388;Parent=gene1423;Dbxref=EnsemblGenomes-Gn:azo1390,EnsemblGenomes-Tr:CAL94007,GOA:A1K5A2,InterPro:IPR005673,InterPro:IPR024370,UniProtKB/TrEMBL:A1K5A2,NCBI_GP:CAL94007.1;Name=CAL94007.1;Note=61%25 Peri-phosph.IPR006059%3B SBP_bac_1. Pfam:PF01547%3B SBP_bac_1%3B 1. TIGRFAMs:TIGR00975%3B 3a0107s03%3B 1. Signal peptide present.%3B~High confidence in function and specificity;gbkey=CDS;gene=pstS2;product=probable phosphate-binding periplasmic protein;protein_id=CAL94007.1;transl_table=11
AM406670.1	EMBL	gene	1520867	1521829	.	+	.	ID=gene1424;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=azo1391
AM406670.1	EMBL	CDS	1520867	1521829	.	+	0	ID=cds1389;Parent=gene1424;Dbxref=EnsemblGenomes-Gn:azo1391,EnsemblGenomes-Tr:CAL94008,GOA:A1K5A3,InterPro:IPR000515,InterPro:IPR011864,UniProtKB/TrEMBL:A1K5A3,NCBI_GP:CAL94008.1;Name=CAL94008.1;Note=PstC: Phosphate transport system permease protein. PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR PHOSPHATE%3B PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE. Part of ABC-type phosphate transport system. InterPro: Binding-protein-dependent transport systems inner membrane component gntP: gluconate transporter%3B~High confidence in function and specificity;gbkey=CDS;gene=pstC;product=phosphate transport system permease protein probable.;protein_id=CAL94008.1;transl_table=11
AM406670.1	EMBL	gene	1521902	1522681	.	+	.	ID=gene1425;Name=azo1392;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1392
AM406670.1	EMBL	CDS	1521902	1522681	.	+	0	ID=cds1390;Parent=gene1425;Dbxref=EnsemblGenomes-Gn:azo1392,EnsemblGenomes-Tr:CAL94009,GOA:A1K5A4,InterPro:IPR000515,InterPro:IPR005672,UniProtKB/TrEMBL:A1K5A4,NCBI_GP:CAL94009.1;Name=CAL94009.1;Note=Region start changed from 1521840 to 1521903 (-63 bases);gbkey=CDS;product=phosphate transport system permease protein probable.;protein_id=CAL94009.1;transl_table=11
AM406670.1	EMBL	gene	1522714	1523478	.	+	.	ID=gene1426;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=azo1393
AM406670.1	EMBL	CDS	1522714	1523478	.	+	0	ID=cds1391;Parent=gene1426;Dbxref=EnsemblGenomes-Gn:azo1393,EnsemblGenomes-Tr:CAL94010,GOA:A1K5A5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005670,InterPro:IPR015850,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K5A5,NCBI_GP:CAL94010.1;Name=CAL94010.1;Note=Phosphate import ATP-binding protein pstB (EC 3.6.3.27) (Phosphate- transporting ATPase) (ABC phosphate transporter) (Peripheral membrane protein B). Part of the ABC transporter complex pstSACB (TC 3.A.1.7.1) involved in phosphate import. Responsible for energy coupling to the transport system. mobB: molybdopterin-guanine dinucleotide%3B~High confidence in function and specificity;gbkey=CDS;gene=pstB;product=phosphate transport ATP-binding protein probable.;protein_id=CAL94010.1;transl_table=11
AM406670.1	EMBL	gene	1523592	1524320	.	+	.	ID=gene1427;Name=tim;gbkey=Gene;gene=tim;gene_biotype=protein_coding;locus_tag=azo1394
AM406670.1	EMBL	CDS	1523592	1524320	.	+	0	ID=cds1392;Parent=gene1427;Dbxref=EnsemblGenomes-Gn:azo1394,EnsemblGenomes-Tr:CAL94011,GOA:A1K5A6,InterPro:IPR000652,InterPro:IPR013785,InterPro:IPR020861,InterPro:IPR022896,NCBI_GP:CAL94011.1;Name=CAL94011.1;Note=Triosephosphate isomerase%2C belongs to the triosephosphate isomerase family.Plays an important role in several metabolic pathways.Involved in the reaction: d-glyceraldehyde 3-phosphate %3D glycerone phosphate. 47%25 Triophos_ismrse. Pfam:PF00121%3B TIM%3B 1. TIGRFAMs:TIGR00419%3B tim%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=tim;product=putative triosephosphate isomerase;protein_id=CAL94011.1;transl_table=11
AM406670.1	EMBL	gene	1524363	1524725	.	+	.	ID=gene1428;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=azo1395
AM406670.1	EMBL	CDS	1524363	1524725	.	+	0	ID=cds1393;Parent=gene1428;Dbxref=EnsemblGenomes-Gn:azo1395,EnsemblGenomes-Tr:CAL94012,GOA:A1K5A7,InterPro:IPR004692,UniProtKB/TrEMBL:A1K5A7,NCBI_GP:CAL94012.1;Name=CAL94012.1;Note=Protein-export membrane protein secG. Involved in protein export. Participates in an early event of protein translocation (By similarity). Together with SecY and SecG%2C SecE forms a multimeric channel through which preproteins are translocated%2C using both proton motive forces and ATP-driven secretion. pfam: preprotein translocase tigerfam: preprotein translocase most propable TMH: 2 no signal peptide InterPro: Preprotein translocase SecG subunit Pfam: secG: preprotein translocase SecG subuni%3B~High confidence in function and specificity;gbkey=CDS;gene=secG;product=preprotein translocase SecG subunit;protein_id=CAL94012.1;transl_table=11
AM406670.1	EMBL	gene	1524791	1524875	.	+	.	ID=gene1429;Name=tRNA-Leu;gbkey=Gene;gene=tRNA-Leu;gene_biotype=tRNA;locus_tag=azo_tRNA_0030
AM406670.1	EMBL	tRNA	1524791	1524875	.	+	.	ID=rna35;Parent=gene1429;anticodon=(pos:1524825..1524827);gbkey=tRNA;gene=tRNA-Leu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Leu
AM406670.1	EMBL	exon	1524791	1524875	.	+	.	ID=id36;Parent=rna35;anticodon=(pos:1524825..1524827);gbkey=tRNA;gene=tRNA-Leu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Leu
AM406670.1	EMBL	gene	1524978	1525352	.	+	.	ID=gene1430;Name=nuoA;gbkey=Gene;gene=nuoA;gene_biotype=protein_coding;locus_tag=azo1396
AM406670.1	EMBL	CDS	1524978	1525352	.	+	0	ID=cds1394;Parent=gene1430;Dbxref=EnsemblGenomes-Gn:azo1396,EnsemblGenomes-Tr:CAL94013,GOA:A1K5A8,InterPro:IPR000440,InterPro:IPR023043,UniProtKB/TrEMBL:A1K5A8,NCBI_GP:CAL94013.1;Name=CAL94013.1;Note=NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3). Ndh-1 shuttles electrons from nadh%2C via fmn and iron-sulfur (fe-s) centers%2C to quinones in the respiratory chain. the immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. couples the redox reaction to proton translocation (for every two electrons transferred%2C four hydrogen ions are translocated across the cytoplasmic membrane)%2C and thus conserves the redox energy in a proton gradient (by similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoA;product=putative NADH-ubiquinone oxidoreductase chain A;protein_id=CAL94013.1;transl_table=11
AM406670.1	EMBL	gene	1525357	1525833	.	+	.	ID=gene1431;Name=nuoB2;gbkey=Gene;gene=nuoB2;gene_biotype=protein_coding;locus_tag=azo1397
AM406670.1	EMBL	CDS	1525357	1525833	.	+	0	ID=cds1395;Parent=gene1431;Dbxref=EnsemblGenomes-Gn:azo1397,EnsemblGenomes-Tr:CAL94014,GOA:A1K5A9,InterPro:IPR006137,InterPro:IPR006138,NCBI_GP:CAL94014.1;Name=CAL94014.1;Note=NADH-ubiquinone oxidoreductase 20 kDa subunit (EC 1.6.5.3) (NADH dehydrogenase subunit 10). Ndh-1 shuttles electrons from nadh%2C via fmn and iron- sulfur (fe-s) centers%2C to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. couples the redox reaction to proton translocation (for every two electrons transferred%2C four hydrogen ions are translocated across the cytoplasmic membrane)%2C and thus conserves the redox energy in a proton gradient (by similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoB2;product=putative NADH-ubiquinone oxidoreductase chain B;protein_id=CAL94014.1;transl_table=11
AM406670.1	EMBL	gene	1525851	1526456	.	+	.	ID=gene1432;Name=nuoC;gbkey=Gene;gene=nuoC;gene_biotype=protein_coding;locus_tag=azo1398
AM406670.1	EMBL	CDS	1525851	1526456	.	+	0	ID=cds1396;Parent=gene1432;Dbxref=EnsemblGenomes-Gn:azo1398,EnsemblGenomes-Tr:CAL94015,GOA:A1K5B0,InterPro:IPR001268,InterPro:IPR010218,InterPro:IPR020396,NCBI_GP:CAL94015.1;Name=CAL94015.1;Note=NADH-quinone oxidoreductase chain C (EC 1.6.99.5) (NADH dehydrogenase I chain C) (NDH-1 chain C). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient (By similarity). InterPro: Respiratory-chain NADH dehydrogenase 30 Kd subunit comE: comEA protein%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoC;product=respiratory-chain NADH dehydrogenase%2C chain C probable.;protein_id=CAL94015.1;transl_table=11
AM406670.1	EMBL	gene	1526449	1527702	.	+	.	ID=gene1433;Name=nuoD;gbkey=Gene;gene=nuoD;gene_biotype=protein_coding;locus_tag=azo1399
AM406670.1	EMBL	CDS	1526449	1527702	.	+	0	ID=cds1397;Parent=gene1433;Dbxref=EnsemblGenomes-Gn:azo1399,EnsemblGenomes-Tr:CAL94016,GOA:A1K5B1,InterPro:IPR001135,InterPro:IPR014029,InterPro:IPR022885,InterPro:IPR029014,NCBI_GP:CAL94016.1;Name=CAL94016.1;Note=NADH-ubiquinone oxidoreductase 49 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (NADH dehydrogenase subunit 7). TRANSFER OF ELECTRONS FROM NADH TO THE RESPIRATORY CHAIN. THE IMMEDIATE ELECTRON ACCEPTOR FOR THE ENZYME IS BELIEVED TO BE UBIQUINONE. COMPONENT OF THE IRON-SULFUR (IP) FRAGMENT OF THE ENZYME (BY SIMILARITY).%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoD;product=putative NADH-ubiquinone oxidoreductase chain D;protein_id=CAL94016.1;transl_table=11
AM406670.1	EMBL	gene	1527783	1528262	.	+	.	ID=gene1434;Name=nuoE;gbkey=Gene;gene=nuoE;gene_biotype=protein_coding;locus_tag=azo1400
AM406670.1	EMBL	CDS	1527783	1528262	.	+	0	ID=cds1398;Parent=gene1434;Dbxref=EnsemblGenomes-Gn:azo1400,EnsemblGenomes-Tr:CAL94017,GOA:A1K5B2,InterPro:IPR002023,InterPro:IPR012336,UniProtKB/TrEMBL:A1K5B2,NCBI_GP:CAL94017.1;Name=CAL94017.1;Note=NADH-ubiquinone oxidoreductase 24 kDa subunit mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3). TRANSFER OF ELECTRONS FROM NADH TO THE RESPIRATORY CHAIN. THE IMMEDIATE ELECTRON ACCEPTOR FOR THE ENZYME IS BELIEVED TO BE UBIQUINONE. COMPONENT OF THE FLAVOPROTEIN-SULFUR (FP) FRAGMENT OF THE ENZYME. InterPro: Respiratory-chain NADH dehydrogenase 24 Kd subunit L12: ribosomal protein L7/L12%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoE;product=putative NADH-ubiquinone oxidoreductase chain E;protein_id=CAL94017.1;transl_table=11
AM406670.1	EMBL	gene	1528259	1529578	.	+	.	ID=gene1435;Name=nuoF;gbkey=Gene;gene=nuoF;gene_biotype=protein_coding;locus_tag=azo1401
AM406670.1	EMBL	CDS	1528259	1529578	.	+	0	ID=cds1399;Parent=gene1435;Dbxref=EnsemblGenomes-Gn:azo1401,EnsemblGenomes-Tr:CAL94018,GOA:A1K5B3,InterPro:IPR001949,InterPro:IPR011537,InterPro:IPR011538,InterPro:IPR019554,InterPro:IPR019575,UniProtKB/TrEMBL:A1K5B3,NCBI_GP:CAL94018.1;Name=CAL94018.1;Note=NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH dehydrogenase I chain F) (NDH-1 chain F). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient. InterPro: Respiratory-chain NADH dehydrogenase 51 Kd subunit gnd_rel: 6-phosphogluconate dehydrogenas%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoF;product=putative NADH-ubiquinone oxidoreductase chain F;protein_id=CAL94018.1;transl_table=11
AM406670.1	EMBL	gene	1529572	1531887	.	+	.	ID=gene1436;Name=nuoG;gbkey=Gene;gene=nuoG;gene_biotype=protein_coding;locus_tag=azo1402
AM406670.1	EMBL	CDS	1529572	1531887	.	+	0	ID=cds1400;Parent=gene1436;Dbxref=EnsemblGenomes-Gn:azo1402,EnsemblGenomes-Tr:CAL94019,GOA:A1K5B4,InterPro:IPR000283,InterPro:IPR001041,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,InterPro:IPR010228,InterPro:IPR012675,InterPro:IPR019574,UniProtKB/TrEMBL:A1K5B4,NCBI_GP:CAL94019.1;Name=CAL94019.1;Note=NADH-ubiquinone oxidoreductase 78 kDa subunit mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-78KD) (CI-78KD). This is the largest subunit of complex I and it is a component of the iron-sulfur (IP) fragment of the enzyme. It may form part of the active site crevice where NADH is oxidized. Ndh-1 shuttles electrons from nadh%2C via fmn and iron- sulfur (fe-s) centers%2C to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred%2C four hydrogen ions are translocated across the cytoplasmic membrane)%2C and thus conserves the redox energy in a proton gradient (by similarity). L12: ribosomal protein L7/L12%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoG;product=putative NADH-ubiquinone oxidoreductase chain G;protein_id=CAL94019.1;transl_table=11
AM406670.1	EMBL	gene	1531887	1532936	.	+	.	ID=gene1437;Name=nuoH;gbkey=Gene;gene=nuoH;gene_biotype=protein_coding;locus_tag=azo1403
AM406670.1	EMBL	CDS	1531887	1532936	.	+	0	ID=cds1401;Parent=gene1437;Dbxref=EnsemblGenomes-Gn:azo1403,EnsemblGenomes-Tr:CAL94020,GOA:A1K5B5,InterPro:IPR001694,InterPro:IPR018086,NCBI_GP:CAL94020.1;Name=CAL94020.1;Note=NADH-quinone oxidoreductase chain H (EC 1.6.99.5) (NADH dehydrogenase I chain H) (NDH-1 chain H). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient (By similarity). InterPro: Respiratory-chain NADH dehydrogenase subunit 1 nup: nucleoside transporter%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoH;product=putative NADH-ubiquinone oxidoreductase chain H;protein_id=CAL94020.1;transl_table=11
AM406670.1	EMBL	gene	1532947	1533432	.	+	.	ID=gene1438;Name=nuoI;gbkey=Gene;gene=nuoI;gene_biotype=protein_coding;locus_tag=azo1404
AM406670.1	EMBL	CDS	1532947	1533432	.	+	0	ID=cds1402;Parent=gene1438;Dbxref=EnsemblGenomes-Gn:azo1404,EnsemblGenomes-Tr:CAL94021,GOA:A1K5B6,InterPro:IPR001450,InterPro:IPR010226,InterPro:IPR017896,InterPro:IPR017900,NCBI_GP:CAL94021.1;Name=CAL94021.1;Note=NDH-1 shuttles electrons from nadh%2C via fmn and iron- sulfur (fe-s) centers%2C to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred%2C four hydrogen ions are translocated across the cytoplasmic membrane)%2C and thus conserves the redox energy in a proton gradient (by similarity). NADH-ubiquinone oxidoreductase 23 kDa subunit mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD) (CI-28.5KD). MAY DONATE ELECTRONS TO UBIQUINONE. ndhI: NADH-plastoquinone oxidoreductase%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoI;product=putative NADH-ubiquinone oxidoreductase%2C chain I;protein_id=CAL94021.1;transl_table=11
AM406670.1	EMBL	gene	1533469	1534071	.	+	.	ID=gene1439;Name=nuoJ;gbkey=Gene;gene=nuoJ;gene_biotype=protein_coding;locus_tag=azo1405
AM406670.1	EMBL	CDS	1533469	1534071	.	+	0	ID=cds1403;Parent=gene1439;Dbxref=EnsemblGenomes-Gn:azo1405,EnsemblGenomes-Tr:CAL94022,GOA:A1K5B7,InterPro:IPR001457,UniProtKB/TrEMBL:A1K5B7,NCBI_GP:CAL94022.1;Name=CAL94022.1;Note=NADH-quinone oxidoreductase chain J (EC 1.6.99.5) (NADH dehydrogenase I chain J) (NDH-1 chain J). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient. MIP: MIP family channel proteins%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoJ;product=NADH-ubiquinone oxidoreductase%2C chain J probable.;protein_id=CAL94022.1;transl_table=11
AM406670.1	EMBL	gene	1534128	1534433	.	+	.	ID=gene1440;Name=nuoK;gbkey=Gene;gene=nuoK;gene_biotype=protein_coding;locus_tag=azo1406
AM406670.1	EMBL	CDS	1534128	1534433	.	+	0	ID=cds1404;Parent=gene1440;Dbxref=EnsemblGenomes-Gn:azo1406,EnsemblGenomes-Tr:CAL94023,GOA:A1K5B8,InterPro:IPR001133,NCBI_GP:CAL94023.1;Name=CAL94023.1;Note=NADH-ubiquinone oxidoreductase chain 4L (EC 1.6.5.3). InterPro: NADH-ubiquinone oxidoreductase chain 4L Ndh-1 shuttles electrons from nadh%2C via fmn and iron-sulfur (fe-s) centers%2C to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred%2C four hydrogen ions are translocated across the cytoplasmic membrane)%2C and thus conserves the redox energy in a proton gradient (by similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoK;product=putative NADH-ubiquinone oxidoreductase%2C chain K;protein_id=CAL94023.1;transl_table=11
AM406670.1	EMBL	gene	1534446	1536470	.	+	.	ID=gene1441;Name=nuoL;gbkey=Gene;gene=nuoL;gene_biotype=protein_coding;locus_tag=azo1407
AM406670.1	EMBL	CDS	1534446	1536470	.	+	0	ID=cds1405;Parent=gene1441;Dbxref=EnsemblGenomes-Gn:azo1407,EnsemblGenomes-Tr:CAL94024,GOA:A1K5B9,InterPro:IPR001516,InterPro:IPR001750,InterPro:IPR003945,InterPro:IPR018393,UniProtKB/TrEMBL:A1K5B9,NCBI_GP:CAL94024.1;Name=CAL94024.1;Note=NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH dehydrogenase I chain L) (NDH-1 chain L). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient (By similarity). 2A0310: amino acid permease (yeast)%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoL;product=NADH-ubiquinone oxidoreductase%2C chain L probable.;protein_id=CAL94024.1;transl_table=11
AM406670.1	EMBL	gene	1536546	1538027	.	+	.	ID=gene1442;Name=nuoM;gbkey=Gene;gene=nuoM;gene_biotype=protein_coding;locus_tag=azo1408
AM406670.1	EMBL	CDS	1536546	1538027	.	+	0	ID=cds1406;Parent=gene1442;Dbxref=EnsemblGenomes-Gn:azo1408,EnsemblGenomes-Tr:CAL94025,GOA:A1K5C0,InterPro:IPR001750,InterPro:IPR003918,InterPro:IPR010227,UniProtKB/TrEMBL:A1K5C0,NCBI_GP:CAL94025.1;Name=CAL94025.1;Note=NADH-quinone oxidoreductase chain M (EC 1.6.99.5) (NADH dehydrogenase I chain M) (NDH-1 chain M). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient. InterPro: NADH-Ubiquinone/plastoquinone (complex I) various chains livcs: branched-chain amino acid trans%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoM;product=putative NADH-ubiquinone oxidoreductase%2C chain M;protein_id=CAL94025.1;transl_table=11
AM406670.1	EMBL	gene	1538065	1539540	.	+	.	ID=gene1443;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=protein_coding;locus_tag=azo1409
AM406670.1	EMBL	CDS	1538065	1539540	.	+	0	ID=cds1407;Parent=gene1443;Dbxref=EnsemblGenomes-Gn:azo1409,EnsemblGenomes-Tr:CAL94026,GOA:A1K5C1,InterPro:IPR001750,InterPro:IPR010096,NCBI_GP:CAL94026.1;Name=CAL94026.1;Note=NADH-quinone oxidoreductase chain N 2 (EC 1.6.99.5) (NADH dehydrogenase I chain N 2) (NDH-1 chain N 2). NDH-1 shuttles electrons from NADH via FMN and iron- sulfur (Fe-S) centers to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred four hydrogen ions are translocated across the cytoplasmic membrane) and thus conserves the redox energy in a proton gradient (By similarity). InterPro: NADH-Ubiquinone/plastoquinone (complex I) various chains ncs2: uracil-xanthine permease%3B~High confidence in function and specificity;gbkey=CDS;gene=nuoN;product=NADH-ubiquinone oxidoreductase%2C chain N probable.;protein_id=CAL94026.1;transl_table=11
AM406670.1	EMBL	gene	1539628	1540179	.	+	.	ID=gene1444;Name=azo1410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1410
AM406670.1	EMBL	CDS	1539628	1540179	.	+	0	ID=cds1408;Parent=gene1444;Dbxref=EnsemblGenomes-Gn:azo1410,EnsemblGenomes-Tr:CAL94027,GOA:A1K5C2,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR020084,UniProtKB/TrEMBL:A1K5C2,NCBI_GP:CAL94027.1;Name=CAL94027.1;Note=ADPribose diphosphatase. ACTIVE ON ADENOSINE(5)TRIPHOSPHO(5)ADENOSINE (AP3A) ADP-RIBOSE NADH ADENOSINE(5)DIPHOSPHO(5)ADENOSINE (AP2A). InterPro: NUDIX hydrolase TIGR00052: conserved hypothetical protein.%3B~High confidence in function and specificity;gbkey=CDS;product=ADP-ribose diphosphatase;protein_id=CAL94027.1;transl_table=11
AM406670.1	EMBL	gene	1540276	1543152	.	-	.	ID=gene1445;Name=azo1411;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1411
AM406670.1	EMBL	CDS	1540276	1543152	.	-	0	ID=cds1409;Parent=gene1445;Dbxref=EnsemblGenomes-Gn:azo1411,EnsemblGenomes-Tr:CAL94028,GOA:A1K5C3,InterPro:IPR000788,InterPro:IPR013344,UniProtKB/TrEMBL:A1K5C3,NCBI_GP:CAL94028.1;Name=CAL94028.1;Note=Conserved hypothetical ribonucleoside reductase. Homology to nrdE of C. violaceum of 62%25 (trembl|Q7NY29). Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides precursors that are necessary for DNA synthesis (By similarity). InterPro: Ribonucleotide reductase large subunit (IPR000788) Pfam: Ribonucleotide reductase%2C all-alpha domein%3B Ribonucleotide reductase%2C barrel domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;product=conserved hypothetical ribonucleoside reductase;protein_id=CAL94028.1;transl_table=11
AM406670.1	EMBL	gene	1543481	1545289	.	+	.	ID=gene1446;Name=hoxF;gbkey=Gene;gene=hoxF;gene_biotype=protein_coding;locus_tag=azo1412
AM406670.1	EMBL	CDS	1543481	1545289	.	+	0	ID=cds1410;Parent=gene1446;Dbxref=EnsemblGenomes-Gn:azo1412,EnsemblGenomes-Tr:CAL94029,GOA:A1K5C4,InterPro:IPR001949,InterPro:IPR011538,InterPro:IPR012336,InterPro:IPR019575,UniProtKB/TrEMBL:A1K5C4,NCBI_GP:CAL94029.1;Name=CAL94029.1;Note=Probable hydrogen dehydrogenase%2C alpha subunit. Homology to hoxF of A. eutrophus of 41%25 (sprot|HOXF_ALCEU). SUBUNITS ALPHA AND GAMMA OF HOXS CONSTITUTE AN NADH-OXIDOREDUCTASE. InterPro: Respiratory-chain NADH dehydrogenase 51 Kd subunit (IPR001949)%3B Respiratory-chain NADH dehydrogenase 24 Kd subunit (IPR002023) Pfam: Respiratory-chain NADH dehydrogenase 24 Kd subunit%3B Respiratory-chain NADH dehydrogenase 51 Kd subunit no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hoxF;product=probable hydrogen dehydrogenase%2C alpha subunit;protein_id=CAL94029.1;transl_table=11
AM406670.1	EMBL	gene	1545286	1545990	.	+	.	ID=gene1447;Name=hoxU;gbkey=Gene;gene=hoxU;gene_biotype=protein_coding;locus_tag=azo1413
AM406670.1	EMBL	CDS	1545286	1545990	.	+	0	ID=cds1411;Parent=gene1447;Dbxref=EnsemblGenomes-Gn:azo1413,EnsemblGenomes-Tr:CAL94030,GOA:A1K5C5,InterPro:IPR000283,InterPro:IPR001041,InterPro:IPR012675,InterPro:IPR016214,InterPro:IPR019574,UniProtKB/TrEMBL:A1K5C5,NCBI_GP:CAL94030.1;Name=CAL94030.1;Note=Probable hydrogen dehydrogenase%2C gamma subunit. Homology to hoxU of A. eutrophus of 40%25 (pir|B35385(PIR). Binds 3 4Fe-4S clusters per subunit (Potential). Pfam: 2Fe-2S iron-sulfur cluster binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hoxU;product=probable hydrogen dehydrogenase%2C gamma subunit;protein_id=CAL94030.1;transl_table=11
AM406670.1	EMBL	gene	1545987	1546559	.	+	.	ID=gene1448;Name=hoxY;gbkey=Gene;gene=hoxY;gene_biotype=protein_coding;locus_tag=azo1414
AM406670.1	EMBL	CDS	1545987	1546559	.	+	0	ID=cds1412;Parent=gene1448;Dbxref=EnsemblGenomes-Gn:azo1414,EnsemblGenomes-Tr:CAL94031,GOA:A1K5C6,InterPro:IPR006137,UniProtKB/TrEMBL:A1K5C6,NCBI_GP:CAL94031.1;Name=CAL94031.1;Note=Probable hydrogen dehydrogenase%2C delta subunit. Homology to hoxY of a. eutrophus of 45%25 (sprot|HOXY_ALCEU). InterPro: Respiratory-chain NADH dehydrogenase 20 Kd subunit Pfam: NADH ubiquinone oxidoreductase%2C 20 kD subunit no signal peptie no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hoxY;product=probable hydrogen dehydrogenase%2C delta subunit;protein_id=CAL94031.1;transl_table=11
AM406670.1	EMBL	gene	1546567	1548030	.	+	.	ID=gene1449;Name=hoxH;gbkey=Gene;gene=hoxH;gene_biotype=protein_coding;locus_tag=azo1415
AM406670.1	EMBL	CDS	1546567	1548030	.	+	0	ID=cds1413;Parent=gene1449;Dbxref=EnsemblGenomes-Gn:azo1415,EnsemblGenomes-Tr:CAL94032,GOA:A1K5C7,InterPro:IPR001501,InterPro:IPR018194,InterPro:IPR029014,UniProtKB/TrEMBL:A1K5C7,NCBI_GP:CAL94032.1;Name=CAL94032.1;Note=Probable hydrogen dehydrogenase%2C beta subunit. Homology to hoxH of a. eutrophus of 48%25 (sprot|HOXH_ALCEU). Pfam: Nickel-dependent hydrogenase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hoxH;product=probable hydrogen dehydrogenase%2C beta subunit;protein_id=CAL94032.1;transl_table=11
AM406670.1	EMBL	gene	1548062	1548553	.	+	.	ID=gene1450;Name=azo1416;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1416
AM406670.1	EMBL	CDS	1548062	1548553	.	+	0	ID=cds1414;Parent=gene1450;Dbxref=EnsemblGenomes-Gn:azo1416,EnsemblGenomes-Tr:CAL94033,GOA:A1K5C8,InterPro:IPR000671,InterPro:IPR023430,UniProtKB/TrEMBL:A1K5C8,NCBI_GP:CAL94033.1;Name=CAL94033.1;Note=conserved hypothetical protein. Homology to an orf of R. capsulata of 42%25 (trembl|Q9XBW7). Tigrfam: hycI: hydrogenase maturation protease no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94033.1;transl_table=11
AM406670.1	EMBL	gene	1548563	1549420	.	-	.	ID=gene1451;Name=azo1417;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1417
AM406670.1	EMBL	CDS	1548563	1549420	.	-	0	ID=cds1415;Parent=gene1451;Dbxref=EnsemblGenomes-Gn:azo1417,EnsemblGenomes-Tr:CAL94034,InterPro:IPR013976,UniProtKB/TrEMBL:A1K5C9,NCBI_GP:CAL94034.1;Name=CAL94034.1;Note=Conserved hypothetical protein. Homology to GSU0904 of Geobacter sulfurreducens of 31%25 (gnl|keqq|gsu:GSU0904(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94034.1;transl_table=11
AM406670.1	EMBL	gene	1549449	1550681	.	-	.	ID=gene1452;Name=czcD2;gbkey=Gene;gene=czcD2;gene_biotype=protein_coding;locus_tag=azo1418
AM406670.1	EMBL	CDS	1549449	1550681	.	-	0	ID=cds1416;Parent=gene1452;Dbxref=EnsemblGenomes-Gn:azo1418,EnsemblGenomes-Tr:CAL94035,GOA:A1K5D0,InterPro:IPR002524,InterPro:IPR027469,UniProtKB/TrEMBL:A1K5D0,NCBI_GP:CAL94035.1;Name=CAL94035.1;Note=CzcD: Members of this family are integral membrane proteins that are found to increase tolerance to divalent metal ions such as cadmium%2C zinc%2C and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells. 41%25 Cation_efflux. Pfam:PF01545%3B Cation_efflux%3B 1. TMhelix:6.%3B~High confidence in function and specificity;gbkey=CDS;gene=czcD2;product=putative cobalt-zinc-cadmium resistance protein;protein_id=CAL94035.1;transl_table=11
AM406670.1	EMBL	gene	1550659	1551510	.	+	.	ID=gene1453;Name=azo1419;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1419
AM406670.1	EMBL	CDS	1550659	1551510	.	+	0	ID=cds1417;Parent=gene1453;Dbxref=EnsemblGenomes-Gn:azo1419,EnsemblGenomes-Tr:CAL94036,InterPro:IPR005135,UniProtKB/TrEMBL:A1K5D1,NCBI_GP:CAL94036.1;Name=CAL94036.1;Note=Conserved hypothetical protein. Homology to Rsc1208 of R. solanacearum of 45%25 (trembl|Q8Y036). InterPro: AP endonucleases family 1 (IPR000097) tigrfam: xth: exodeoxyribonuclease III (xth) All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA. Pfam: AP endonuclease family 1 no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94036.1;transl_table=11
AM406670.1	EMBL	gene	1551523	1552323	.	-	.	ID=gene1454;Name=azo1420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1420
AM406670.1	EMBL	CDS	1551523	1552323	.	-	0	ID=cds1418;Parent=gene1454;Dbxref=EnsemblGenomes-Gn:azo1420,EnsemblGenomes-Tr:CAL94037,InterPro:IPR018692,UniProtKB/TrEMBL:A1K5D2,NCBI_GP:CAL94037.1;Name=CAL94037.1;Note=Conserved hypothetical membrane protein. Homology to CV3790 of Chromobacterium violaceum of 42%25 (trembl|Q7NRJ1). No domains predicted. no signal peptide 5 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94037.1;transl_table=11
AM406670.1	EMBL	gene	1552425	1553234	.	-	.	ID=gene1455;Name=azo1421;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1421
AM406670.1	EMBL	CDS	1552425	1553234	.	-	0	ID=cds1419;Parent=gene1455;Dbxref=EnsemblGenomes-Gn:azo1421,EnsemblGenomes-Tr:CAL94038,GOA:A1K5D3,InterPro:IPR000073,InterPro:IPR000639,InterPro:IPR029058,UniProtKB/TrEMBL:A1K5D3,NCBI_GP:CAL94038.1;Name=CAL94038.1;Note=TREMBLNEW:CAE27009: Probable carboxylesterase%2C 50%25 identity%2C 60%25 similarity. Dihydrolipoamide acetyltransferase component of acetoin cleaving system (EC 2.3.1.12) (Acetoin dehydrogenase E2 component). InterPro: Alpha/beta hydrolase fold: IPR000073%3B A/b_hydrolase. IPR003089%3B AB_hydrolase. IPR000379%3B Ser_estrs. Pfam PF00561%3B Abhydrolase_1 InterPro: Alpha/beta hydrolase fold kdgT: 2-keto-3-deoxygluconate permease%3B~Family membership;gbkey=CDS;product=probable carboxylesterase;protein_id=CAL94038.1;transl_table=11
AM406670.1	EMBL	gene	1553238	1554542	.	-	.	ID=gene1456;Name=azo1422;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1422
AM406670.1	EMBL	CDS	1553238	1554542	.	-	0	ID=cds1420;Parent=gene1456;Dbxref=EnsemblGenomes-Gn:azo1422,EnsemblGenomes-Tr:CAL94039,GOA:A1K5D4,InterPro:IPR000277,InterPro:IPR006235,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K5D4,NCBI_GP:CAL94039.1;Name=CAL94039.1;Note=Probable O-acetylhomoserine aminocarboxypropyltransferase. Homology with cysD of A. nidulans of 54%25 (sprot|CYSD_EMENI). Transforms O-acetylhomoserine into homocysteine. InterPro: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes (IPR000277) Pfam: Cys/Met metabolism PLP-dependent enzyme no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;product=probable O-acetylhomoserine aminocarboxypropyltransferase;protein_id=CAL94039.1;transl_table=11
AM406670.1	EMBL	gene	1554602	1554817	.	-	.	ID=gene1457;Name=azo1423;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1423
AM406670.1	EMBL	CDS	1554602	1554817	.	-	0	ID=cds1421;Parent=gene1457;Dbxref=EnsemblGenomes-Gn:azo1423,EnsemblGenomes-Tr:CAL94040,InterPro:IPR007420,UniProtKB/TrEMBL:A1K5D5,NCBI_GP:CAL94040.1;Name=CAL94040.1;Note=Conserved hypothetical protein. Homology to bsr7110 of B.japonicum of 48%25 (tremble:Q89EH5). Pfam:Protein of unknown function (DUF465) Family members are found in small bacterial proteins%2C and also in the heavy chains of eukaryotic myosin and kinesin%2C C terminal of the motor domain (Myosin Myosin_head%2C Kinesin Kinesin). Members of this family may form coiled coil structures. No signal peptide present. No TMH;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94040.1;transl_table=11
AM406670.1	EMBL	gene	1554874	1555542	.	+	.	ID=gene1458;Name=greB;gbkey=Gene;gene=greB;gene_biotype=protein_coding;locus_tag=azo1424
AM406670.1	EMBL	CDS	1554874	1555542	.	+	0	ID=cds1422;Parent=gene1458;Dbxref=EnsemblGenomes-Gn:azo1424,EnsemblGenomes-Tr:CAL94041,GOA:A1K5D6,InterPro:IPR001437,InterPro:IPR006358,InterPro:IPR018151,InterPro:IPR022691,InterPro:IPR028624,UniProtKB/TrEMBL:A1K5D6,NCBI_GP:CAL94041.1;Name=CAL94041.1;Note=Transcription elongation factor GreB (Transcript cleavage factor greB). Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as greA or greB allows the resumption of elongation from the new 3terminus. GreB releases sequences of up to 9 nucleotides in length (By similarity). belongs to the grea/greb family. 48%25 1 PF03449 GreA_GreB_N%3B 1. TIGR01461%3B greB%3B 1. TIGR00270: conserved hypothetical prote TIGR00270: conserved hypothetical prote%3B~High confidence in function and specificity;gbkey=CDS;gene=greB;product=putative transcription elongation factor;protein_id=CAL94041.1;transl_table=11
AM406670.1	EMBL	gene	1555626	1557557	.	+	.	ID=gene1459;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;locus_tag=azo1425
AM406670.1	EMBL	CDS	1555626	1557557	.	+	0	ID=cds1423;Parent=gene1459;Dbxref=EnsemblGenomes-Gn:azo1425,EnsemblGenomes-Tr:CAL94042,GOA:A1K5D7,InterPro:IPR001404,InterPro:IPR003594,InterPro:IPR019805,InterPro:IPR020568,InterPro:IPR020575,UniProtKB/TrEMBL:A1K5D7,NCBI_GP:CAL94042.1;Name=CAL94042.1;Note=Probable chaperone protein htpG. Homology to htpG of E. coli of 58%25 (sprot|HTPG_ECOLI) Molecular chaperone. Has ATPase activity (By similarity). InterPro: Heat shock hsp90 proteins family (IPR001404)%3BHistidine Kinase-%2C DNA gyraseB-%2C phytochrome-like ATPase (IPR003549 Pfam: Hsp90 protein%3B Histidine Kinase-%2C DNA gyraseB-%2C phytochrome-like ATPase no signal peptide no TMHs mutl: DNA mismatch repair protein Mut%3B~Function unclear;gbkey=CDS;gene=htpG;product=probable chaperon protein HtpG;protein_id=CAL94042.1;transl_table=11
AM406670.1	EMBL	gene	1557627	1558949	.	-	.	ID=gene1460;Name=yadQ;gbkey=Gene;gene=yadQ;gene_biotype=protein_coding;locus_tag=azo1426
AM406670.1	EMBL	CDS	1557627	1558949	.	-	0	ID=cds1424;Parent=gene1460;Dbxref=EnsemblGenomes-Gn:azo1426,EnsemblGenomes-Tr:CAL94043,GOA:A1K5D8,InterPro:IPR001807,InterPro:IPR014743,UniProtKB/TrEMBL:A1K5D8,NCBI_GP:CAL94043.1;Name=CAL94043.1;Note=Chloride channel protein%2C yadQ.In E.coli the product of yadQ gene is named EriC.This family of ion channels contains 10 or 12 transmembrane helices. Each protein forms a single pore. It has been shown that some members of this family form homodimers. These proteins contain two CBS domains. Voltage-gated ClC-type chloride channel clcA. Probably acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation as part of the extreme acid resistance (XAR) response (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=yadQ;product=putative chloride channel protein;protein_id=CAL94043.1;transl_table=11
AM406670.1	EMBL	gene	1559286	1559798	.	+	.	ID=gene1461;Name=mexR;gbkey=Gene;gene=mexR;gene_biotype=protein_coding;locus_tag=azo1427
AM406670.1	EMBL	CDS	1559286	1559798	.	+	0	ID=cds1425;Parent=gene1461;Dbxref=EnsemblGenomes-Gn:azo1427,EnsemblGenomes-Tr:CAL94044,GOA:A1K5D9,InterPro:IPR000835,InterPro:IPR011991,UniProtKB/TrEMBL:A1K5D9,NCBI_GP:CAL94044.1;Name=CAL94044.1;Note=Putative MarR-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;gene=mexR;product=putative MarR-family transcriptional regulator;protein_id=CAL94044.1;transl_table=11
AM406670.1	EMBL	gene	1560019	1560789	.	+	.	ID=gene1462;Name=azo1428;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1428
AM406670.1	EMBL	CDS	1560019	1560789	.	+	0	ID=cds1426;Parent=gene1462;Dbxref=EnsemblGenomes-Gn:azo1428,EnsemblGenomes-Tr:CAL94045,InterPro:IPR001279,UniProtKB/TrEMBL:A1K5E0,NCBI_GP:CAL94045.1;Name=CAL94045.1;Note=Conserved hypothetical flavoprotein. Homology to rsc2212 of P. solanacearum of 59%25 (trembl|Q8XXA4). Pfam: Methallo-beta-lactamase no signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical flavoprotein;protein_id=CAL94045.1;transl_table=11
AM406670.1	EMBL	gene	1560826	1562004	.	-	.	ID=gene1463;Name=azo1429;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1429
AM406670.1	EMBL	CDS	1560826	1562004	.	-	0	ID=cds1427;Parent=gene1463;Dbxref=EnsemblGenomes-Gn:azo1429,EnsemblGenomes-Tr:CAL94046,InterPro:IPR008912,UniProtKB/TrEMBL:A1K5E1,NCBI_GP:CAL94046.1;Name=CAL94046.1;Note=Conserved hypothetical protein%2C 63%25 Identitcal (77%25 similarity) to TrEMBL%3BQ8Y0P7%2C65%25 identity to TrEMBL%3BQ7WCK6. Most good homologous hits do not have the same VWA domain represented by this. Has PF05762(IPR008912):VWA domain containing CoxE-like protein%3BThis family is annotated by SMART as containing a VWA type domain. The exact function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon is several bacteria. No Signal peptide or TMH reported present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94046.1;transl_table=11
AM406670.1	EMBL	gene	1562015	1563343	.	-	.	ID=gene1464;Name=azo1430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1430
AM406670.1	EMBL	CDS	1562015	1563343	.	-	0	ID=cds1428;Parent=gene1464;Dbxref=EnsemblGenomes-Gn:azo1430,EnsemblGenomes-Tr:CAL94047,InterPro:IPR013976,UniProtKB/TrEMBL:A1K5E2,NCBI_GP:CAL94047.1;Name=CAL94047.1;Note=Conserved hypothetical secreted protein. Homology to TdenA01001626 of Thiobacillus denitrificans of 32%25 (gi|52006684|ref|ZP_00334063.1|(NBCI ENTREZ)). No domains predicted. Signal P reporting signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94047.1;transl_table=11
AM406670.1	EMBL	gene	1563353	1564201	.	-	.	ID=gene1465;Name=azo1431;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1431
AM406670.1	EMBL	CDS	1563353	1564201	.	-	0	ID=cds1429;Parent=gene1465;Dbxref=EnsemblGenomes-Gn:azo1431,EnsemblGenomes-Tr:CAL94048,GOA:A1K5E3,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR027417,UniProtKB/TrEMBL:A1K5E3,NCBI_GP:CAL94048.1;Name=CAL94048.1;Note=TREMBL: Q8Y0P5 : 81%25 identity%2C 90%25 similarity. Probable Cell division protein ftsH homolog (EC 3.4.24.-). InterPro:IPR003593%3B AAA_ATPase. IPR003959%3B AAA_ATPase_centr. Pfam: PF00004%3B AAA%3B ATPase family associated with various SMART: SM00382%3B AAA%3B Absence of transmembrane helices (TMHMM predicted) NON secretory protein ruvB: Holliday junction DNA helicase Ru%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94048.1;transl_table=11
AM406670.1	EMBL	gene	1564276	1564599	.	+	.	ID=gene1466;Name=azo1432;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1432
AM406670.1	EMBL	CDS	1564276	1564599	.	+	0	ID=cds1430;Parent=gene1466;Dbxref=EnsemblGenomes-Gn:azo1432,EnsemblGenomes-Tr:CAL94049,GOA:A1K5E4,InterPro:IPR003088,InterPro:IPR009056,UniProtKB/TrEMBL:A1K5E4,NCBI_GP:CAL94049.1;Name=CAL94049.1;Note=Conserved hypothetical cytochrome c-type protein. Homology to rsc0999 of R. solanacearum of 62%25 (trembl|Q8Y0P4). Pfam: Cytochrome c signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical cytochrome c-type protein;protein_id=CAL94049.1;transl_table=11
AM406670.1	EMBL	gene	1564596	1564937	.	+	.	ID=gene1467;Name=azo1433;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1433
AM406670.1	EMBL	CDS	1564596	1564937	.	+	0	ID=cds1431;Parent=gene1467;Dbxref=EnsemblGenomes-Gn:azo1433,EnsemblGenomes-Tr:CAL94050,GOA:A1K5E5,InterPro:IPR003088,InterPro:IPR009056,UniProtKB/TrEMBL:A1K5E5,NCBI_GP:CAL94050.1;Name=CAL94050.1;Note=Conserved hypothetical cytochrome c-type protein. Homology to ebA4874 of Azoarcus_EbN1 of 60%25 (gnl|keqq|eba:ebA4874(KEGG)). Interpro: cytochrome c%2CclassI (IPRoo3088)%3B cytochrome c%2C class IC (IPR008168). Pfam: cytochrome C. singal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical cytochrome c-type protein;protein_id=CAL94050.1;transl_table=11
AM406670.1	EMBL	gene	1565036	1565467	.	-	.	ID=gene1468;Name=azo1434;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1434
AM406670.1	EMBL	CDS	1565036	1565467	.	-	0	ID=cds1432;Parent=gene1468;Dbxref=EnsemblGenomes-Gn:azo1434,EnsemblGenomes-Tr:CAL94051,InterPro:IPR014993,UniProtKB/TrEMBL:A1K5E6,NCBI_GP:CAL94051.1;Name=CAL94051.1;Note=Hypothetical protein similar by 78%25 to RSc1001 [RS04291] [Ralstonia solanacearum(Pseudomonas solanacearum)].TrEMBL Q8Y0P2. No Signal Peptide Reported No TMH Reported.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94051.1;transl_table=11
AM406670.1	EMBL	gene	1565496	1566137	.	-	.	ID=gene1469;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=azo1435
AM406670.1	EMBL	CDS	1565496	1566137	.	-	0	ID=cds1433;Parent=gene1469;Dbxref=EnsemblGenomes-Gn:azo1435,EnsemblGenomes-Tr:CAL94052,GOA:A1K5E7,InterPro:IPR000445,InterPro:IPR003265,InterPro:IPR003583,InterPro:IPR003651,InterPro:IPR005759,InterPro:IPR011257,InterPro:IPR023170,UniProtKB/TrEMBL:A1K5E7,NCBI_GP:CAL94052.1;Name=CAL94052.1;Note=Endonuclease III . Has both an apurinic and/or apyrimidinic endonuclease activity and a DNA N-glycosylase activity. Incises damaged DNA at cytosines thymines and guanines. Acts on a damaged strand 5 from the damaged site (By similarity). TIGRFAM: comE: comEA protein%3B~High confidence in function and specificity;gbkey=CDS;gene=nth;product=DNA-(apurinic or apyrimidinic site) lyase;protein_id=CAL94052.1;transl_table=11
AM406670.1	EMBL	gene	1566139	1566852	.	-	.	ID=gene1470;Name=rnfE2;gbkey=Gene;gene=rnfE2;gene_biotype=protein_coding;locus_tag=azo1436
AM406670.1	EMBL	CDS	1566139	1566852	.	-	0	ID=cds1434;Parent=gene1470;Dbxref=EnsemblGenomes-Gn:azo1436,EnsemblGenomes-Tr:CAL94053,GOA:A1K5E8,InterPro:IPR003667,InterPro:IPR010968,UniProtKB/TrEMBL:A1K5E8,NCBI_GP:CAL94053.1;Name=CAL94053.1;Note=Probable electron transport complex protein rnfE. Homology to rnfE of r. capsulata of 49%25 (sprot|RNFE_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. InterPro: RnfA-Nqr electron transport subunit ((IPR003667) Pfam: Rnf-Nqr-subunit%2C membran protein signal peptide 5 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=rnfE2;product=probable electron transport complex protein RnfE;protein_id=CAL94053.1;transl_table=11
AM406670.1	EMBL	gene	1566849	1567523	.	-	.	ID=gene1471;Name=rnfG2;gbkey=Gene;gene=rnfG2;gene_biotype=protein_coding;locus_tag=azo1437
AM406670.1	EMBL	CDS	1566849	1567523	.	-	0	ID=cds1435;Parent=gene1471;Dbxref=EnsemblGenomes-Gn:azo1437,EnsemblGenomes-Tr:CAL94054,GOA:A1K5E9,InterPro:IPR007329,InterPro:IPR010209,UniProtKB/TrEMBL:A1K5E9,NCBI_GP:CAL94054.1;Name=CAL94054.1;Note=Putative electron transport complex protein rnfG. Homolog to rnfG of R. capsulata of 36%25 (sprot|RNFG_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=rnfG2;product=putative electron transport complex protein RnfG;protein_id=CAL94054.1;transl_table=11
AM406670.1	EMBL	gene	1567520	1568527	.	-	.	ID=gene1472;Name=rnfD2;gbkey=Gene;gene=rnfD2;gene_biotype=protein_coding;locus_tag=azo1438
AM406670.1	EMBL	CDS	1567520	1568527	.	-	0	ID=cds1436;Parent=gene1472;Dbxref=EnsemblGenomes-Gn:azo1438,EnsemblGenomes-Tr:CAL94055,GOA:A1K5F0,InterPro:IPR004338,InterPro:IPR011303,UniProtKB/TrEMBL:A1K5F0,NCBI_GP:CAL94055.1;Name=CAL94055.1;Note=Putative electron transport complex protein rnfD. Homology to rnfD of R. capsulatus of 33%25 (sprot|RNFD_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase (By similarity). InterPro: NQR2 and RnfD/E related proteins (IPR004338) Pfam: NQR2%2C RnfD%2C RnfE family signal peptide probable 6 TMHs%3B~Family membership;gbkey=CDS;gene=rnfD2;product=putative electron transport complex protein RnfD;protein_id=CAL94055.1;transl_table=11
AM406670.1	EMBL	gene	1568524	1570182	.	-	.	ID=gene1473;Name=rnfC2;gbkey=Gene;gene=rnfC2;gene_biotype=protein_coding;locus_tag=azo1439
AM406670.1	EMBL	CDS	1568524	1570182	.	-	0	ID=cds1437;Parent=gene1473;Dbxref=EnsemblGenomes-Gn:azo1439,EnsemblGenomes-Tr:CAL94056,GOA:A1K5F1,InterPro:IPR009051,InterPro:IPR010208,InterPro:IPR011538,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR019554,InterPro:IPR026902,UniProtKB/TrEMBL:A1K5F1,NCBI_GP:CAL94056.1;Name=CAL94056.1;Note=Putative electron transport complex protein RnfC. Homology to rnfC of R. capsulatus of 38%25 (sprot|RNFC_RHOCA) Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB. InterPro: Respiratory-chain NADH dehydrogenase 51 Kd subunit (IPR001949)%3B 4Fe-4S ferredoxin%2C iron-sulfur bidning domain (IPR001450) Pfam: Respiratory-chain NADH dehydrogenase%3B 4Fe-4S binding domain no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=rnfC2;product=putative electronen transport complex protein RnfC;protein_id=CAL94056.1;transl_table=11
AM406670.1	EMBL	gene	1570179	1570730	.	-	.	ID=gene1474;Name=rnfB2;gbkey=Gene;gene=rnfB2;gene_biotype=protein_coding;locus_tag=azo1440
AM406670.1	EMBL	CDS	1570179	1570730	.	-	0	ID=cds1438;Parent=gene1474;Dbxref=EnsemblGenomes-Gn:azo1440,EnsemblGenomes-Tr:CAL94057,GOA:A1K5F2,InterPro:IPR007202,InterPro:IPR010207,InterPro:IPR016463,InterPro:IPR017896,InterPro:IPR017900,NCBI_GP:CAL94057.1;Name=CAL94057.1;Note=Probable electron transport complex protein RnfB. Homology to rnfB of R. capsulatus of 42%25 (sprot|RNFB_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfC. Pfam: 4Fe-4S binding domain signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=rnfB2;product=probable electron transport complex protein RnfB;protein_id=CAL94057.1;transl_table=11
AM406670.1	EMBL	gene	1570739	1571323	.	-	.	ID=gene1475;Name=rnfA2;gbkey=Gene;gene=rnfA2;gene_biotype=protein_coding;locus_tag=azo1441
AM406670.1	EMBL	CDS	1570739	1571323	.	-	0	ID=cds1439;Parent=gene1475;Dbxref=EnsemblGenomes-Gn:azo1441,EnsemblGenomes-Tr:CAL94058,GOA:A1K5F3,InterPro:IPR003667,InterPro:IPR011293,UniProtKB/TrEMBL:A1K5F3,NCBI_GP:CAL94058.1;Name=CAL94058.1;Note=Probable electron transport complex protein RnfA. Homology to rnfA of R. capsultatus of 57%25 (RNFA_RHOCA). Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Required for stable existence of rnfB and rnfC. InterPro: RnfA-Nqr electron transport subunit (IPR003667) Pfam: Rnf-Nqr subunit%2C membrane protein no signal peptide 6 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=rnfA2;product=probable electron transport complex promplex protein RnfA;protein_id=CAL94058.1;transl_table=11
AM406670.1	EMBL	gene	1571407	1572036	.	-	.	ID=gene1476;Name=azo1442;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1442
AM406670.1	EMBL	CDS	1571407	1572036	.	-	0	ID=cds1440;Parent=gene1476;Dbxref=EnsemblGenomes-Gn:azo1442,EnsemblGenomes-Tr:CAL94059,GOA:A1K5F4,InterPro:IPR002711,InterPro:IPR003615,UniProtKB/TrEMBL:A1K5F4,NCBI_GP:CAL94059.1;Name=CAL94059.1;Note=HNH family of nucleases is found in bacteria%2Cviruses%2C eukaryotes and includes yeast intron 1 protein%2CMutS%2C and bacterial colicins and pyocins. InterPro (IPR003615): HNH nuclease InterPro (IPR002711): HNH endonuclease. Pfam (PF01844): HNH endonuclease.%3B~Family membership;gbkey=CDS;product=putative nuclease;protein_id=CAL94059.1;transl_table=11
AM406670.1	EMBL	gene	1572157	1572723	.	-	.	ID=gene1477;Name=azo1443;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1443
AM406670.1	EMBL	CDS	1572157	1572723	.	-	0	ID=cds1441;Parent=gene1477;Dbxref=EnsemblGenomes-Gn:azo1443,EnsemblGenomes-Tr:CAL94060,GOA:A1K5F5,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR029401,UniProtKB/TrEMBL:A1K5F5,NCBI_GP:CAL94060.1;Name=CAL94060.1;Note=Conserved hypothetical NUDIX hydrolase. Homology to ne1158 of N. europaea of 58%25 (trembl|Q82VD6) The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family. The family can be divided into a number of subgroups%2C of which MutT anti-mutagenic activity represents only one type%3B most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose%2C GDP- mannose%2C TDP-glucose%2C NADH%2C UDP-sugars%2C dNTP and NTP). InterPro: NUDIX hydrolase (IPR000086) Pfam: MutT-like domain no signal peptide no TMHs%3B~Function unclear;gbkey=CDS;product=conserved hypothetical NUDIX hydrolase;protein_id=CAL94060.1;transl_table=11
AM406670.1	EMBL	gene	1572893	1574863	.	+	.	ID=gene1478;Name=mmoQ;gbkey=Gene;gene=mmoQ;gene_biotype=protein_coding;locus_tag=azo1444
AM406670.1	EMBL	CDS	1572893	1574863	.	+	0	ID=cds1442;Parent=gene1478;Dbxref=EnsemblGenomes-Gn:azo1444,EnsemblGenomes-Tr:CAL94061,GOA:A1K5F6,InterPro:IPR000160,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR013976,InterPro:IPR029787,UniProtKB/TrEMBL:A1K5F6,NCBI_GP:CAL94061.1;Name=CAL94061.1;Note=Probable response regulator%2C%3B~Family membership;gbkey=CDS;gene=mmoQ;product=probable response regulator;protein_id=CAL94061.1;transl_table=11
AM406670.1	EMBL	gene	1574860	1576590	.	+	.	ID=gene1479;Name=azo1445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1445
AM406670.1	EMBL	CDS	1574860	1576590	.	+	0	ID=cds1443;Parent=gene1479;Dbxref=EnsemblGenomes-Gn:azo1445,EnsemblGenomes-Tr:CAL94062,GOA:A1K5F7,InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR029787,UniProtKB/TrEMBL:A1K5F7,NCBI_GP:CAL94062.1;Name=CAL94062.1;Note=EAL/GGDEF-domain containing signaling protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=EAL/GGDEF-domain containing signaling protein;protein_id=CAL94062.1;transl_table=11
AM406670.1	EMBL	gene	1576751	1577074	.	+	.	ID=gene1480;Name=flhD;gbkey=Gene;gene=flhD;gene_biotype=protein_coding;locus_tag=azo1446
AM406670.1	EMBL	CDS	1576751	1577074	.	+	0	ID=cds1444;Parent=gene1480;Dbxref=EnsemblGenomes-Gn:azo1446,EnsemblGenomes-Tr:CAL94063,GOA:A1K5F8,InterPro:IPR023559,UniProtKB/TrEMBL:A1K5F8,NCBI_GP:CAL94063.1;Name=CAL94063.1;Note=Flagellar transcriptional activator%2CflhD. This family consists of several bacterial flagellar transcriptional activator proteins. FlhD combines with FlhC to form a regulatory complex in Escherichia coli. This complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator TrEMBL: Q82SD3 InterPro:IPR007911 Pfam:PF05247 FUNCTION: Transcriptional activator. Involved in the regulation of a number of genetic systems (By similarity). SUBUNIT: Homodimer%3B disulfide-linked. Forms a heterotetrameric complex with two subunits of flhC (By similarity). SUBCELLULAR LOCATION: Cytoplasmic (By similarity). Belongs to the flhD family. No Signal Peptide. No TMH Present.%3B~Family membership;gbkey=CDS;gene=flhD;product=flagellar transcriptional activator FlhD;protein_id=CAL94063.1;transl_table=11
AM406670.1	EMBL	gene	1577079	1577633	.	+	.	ID=gene1481;Name=flhC;gbkey=Gene;gene=flhC;gene_biotype=protein_coding;locus_tag=azo1447
AM406670.1	EMBL	CDS	1577079	1577633	.	+	0	ID=cds1445;Parent=gene1481;Dbxref=EnsemblGenomes-Gn:azo1447,EnsemblGenomes-Tr:CAL94064,GOA:A1K5F9,InterPro:IPR007944,UniProtKB/TrEMBL:A1K5F9,NCBI_GP:CAL94064.1;Name=CAL94064.1;Note=Flagellar transcriptional activator . This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in E. coli%2C this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator. PFAM: PF05280%3B InterPro:IPR007944 No Signal Peptide No TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=flhC;product=flagellar transcriptional activator FlhC;protein_id=CAL94064.1;transl_table=11
AM406670.1	EMBL	gene	1577773	1578627	.	+	.	ID=gene1482;Name=motA2;gbkey=Gene;gene=motA2;gene_biotype=protein_coding;locus_tag=azo1448
AM406670.1	EMBL	CDS	1577773	1578627	.	+	0	ID=cds1446;Parent=gene1482;Dbxref=EnsemblGenomes-Gn:azo1448,EnsemblGenomes-Tr:CAL94065,InterPro:IPR000540,InterPro:IPR022522,UniProtKB/TrEMBL:A1K5G0,NCBI_GP:CAL94065.1;Name=CAL94065.1;Note=Flagellar motor protein MotA (Chemotaxis motA protein). Required for rotation of the flagellar motor. Probable transmembrane proton channel (By similarity). signal peptide probable 4 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=motA2;product=flagellar motor protein MotA;protein_id=CAL94065.1;transl_table=11
AM406670.1	EMBL	gene	1578688	1579761	.	+	.	ID=gene1483;Name=motB2;gbkey=Gene;gene=motB2;gene_biotype=protein_coding;locus_tag=azo1449
AM406670.1	EMBL	CDS	1578688	1579761	.	+	0	ID=cds1447;Parent=gene1483;Dbxref=EnsemblGenomes-Gn:azo1449,EnsemblGenomes-Tr:CAL94066,InterPro:IPR006665,InterPro:IPR025713,UniProtKB/TrEMBL:A1K5G1,NCBI_GP:CAL94066.1;Name=CAL94066.1;Note=Flagellar motor protein MotB (Chemotaxis motB protein. Required for the rotation of the flagellar motor. Might be a linker that fastens the torque-generating machinery to the cell wall. Pfam: OmpA family no signal peptide probable 1 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=motB2;product=flagellar motor protein MotB;protein_id=CAL94066.1;transl_table=11
AM406670.1	EMBL	gene	1579813	1580229	.	+	.	ID=gene1484;Name=cheY2;gbkey=Gene;gene=cheY2;gene_biotype=protein_coding;locus_tag=azo1450
AM406670.1	EMBL	CDS	1579813	1580229	.	+	0	ID=cds1448;Parent=gene1484;Dbxref=EnsemblGenomes-Gn:azo1450,EnsemblGenomes-Tr:CAL94067,GOA:A1K5G2,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1K5G2,NCBI_GP:CAL94067.1;Name=CAL94067.1;Note=Putative chemotaxis response regulator%2C%3B~Family membership;gbkey=CDS;gene=cheY2;product=putative chemotaxis response regulator;protein_id=CAL94067.1;transl_table=11
AM406670.1	EMBL	gene	1580242	1582332	.	+	.	ID=gene1485;Name=cheA2;gbkey=Gene;gene=cheA2;gene_biotype=protein_coding;locus_tag=azo1451
AM406670.1	EMBL	CDS	1580242	1582332	.	+	0	ID=cds1449;Parent=gene1485;Dbxref=EnsemblGenomes-Gn:azo1451,EnsemblGenomes-Tr:CAL94068,GOA:A1K5G3,InterPro:IPR002545,InterPro:IPR003594,InterPro:IPR004105,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,UniProtKB/TrEMBL:A1K5G3,NCBI_GP:CAL94068.1;Name=CAL94068.1;Note=Chemotaxis protein cheA%3B INVOLVED IN THE TRANSMISSION OF SENSORY SIGNALS FROM THE CHEMORECEPTORS TO THE FLAGELLAR MOTORS. CHEA IS AUTOPHOSPHORYLATED%3B IT CAN TRANSFER ITS PHOSPHATE GROUP TO EITHER CHEB OR CHEY. EMBL AE005411%3B AAG56878.1%3B -. AP002559%3B BAB36021.1%3B -. PIR B85802%3B B85802. F90953%3B F90953. InterPro IPR003594%3B ATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR002545%3B CheW. IPR000629%3B DEAD_box. IPR004105%3B H-kinase_dim. IPR005467%3B His_kinase. IPR009082%3B His_kin_homodim. IPR008207%3B Hpt. IPR008208%3B Hpt_N. Pfam PF01584%3B CheW%3B 1. PF02895%3B H-kinase_dim%3B 1. PF02518%3B HATPase_c%3B 1. PF01627%3B Hpt%3B 1. PRINTS PR00344%3B BCTRLSENSOR.%3B~High confidence in function and specificity;gbkey=CDS;gene=cheA2;product=chemotaxis protein cheA;protein_id=CAL94068.1;transl_table=11
AM406670.1	EMBL	gene	1582399	1582908	.	+	.	ID=gene1486;Name=cheW2;gbkey=Gene;gene=cheW2;gene_biotype=protein_coding;locus_tag=azo1452
AM406670.1	EMBL	CDS	1582399	1582908	.	+	0	ID=cds1450;Parent=gene1486;Dbxref=EnsemblGenomes-Gn:azo1452,EnsemblGenomes-Tr:CAL94069,GOA:A1K5G4,InterPro:IPR002545,UniProtKB/TrEMBL:A1K5G4,NCBI_GP:CAL94069.1;Name=CAL94069.1;Note=Positive regulator of CheA protein activity%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=cheW2;product=positive regulator of CheA protein activity;protein_id=CAL94069.1;transl_table=11
AM406670.1	EMBL	gene	1582905	1584779	.	+	.	ID=gene1487;Name=tsr;gbkey=Gene;gene=tsr;gene_biotype=protein_coding;locus_tag=azo1453
AM406670.1	EMBL	CDS	1582905	1584779	.	+	0	ID=cds1451;Parent=gene1487;Dbxref=EnsemblGenomes-Gn:azo1453,EnsemblGenomes-Tr:CAL94070,GOA:A1K5G5,InterPro:IPR000014,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,UniProtKB/TrEMBL:A1K5G5,NCBI_GP:CAL94070.1;Name=CAL94070.1;Note=The Escherichia coli chemoreceptor Tsr mediates tactic responses to serine%2C repellents%2C and changes in temperature. Similar to sprot|MCP1_ECOLI (31%25)and to trembl|Q7NSI6 (36%25). Bacterial chemotactic-signal transducers are proteins that respond to changes in the concentration of attractants and repellents in the environment%2C and transduce a signal from the outside to the inside of the cell. These proteins undergo two covalent modifications: deamidation and reversible methylation. Attractants increase the level of methylation while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Pfam (PF00015): MCPsignal TMHMM reporting two TMH.%3B~Specificity unclear;gbkey=CDS;gene=tsr;product=putative serine chemoreceptor protein;protein_id=CAL94070.1;transl_table=11
AM406670.1	EMBL	gene	1584776	1587298	.	+	.	ID=gene1488;Name=tcp;gbkey=Gene;gene=tcp;gene_biotype=protein_coding;locus_tag=azo1454
AM406670.1	EMBL	CDS	1584776	1587298	.	+	0	ID=cds1452;Parent=gene1488;Dbxref=EnsemblGenomes-Gn:azo1454,EnsemblGenomes-Tr:CAL94071,GOA:A1K5G6,InterPro:IPR000014,InterPro:IPR001610,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR013655,UniProtKB/TrEMBL:A1K5G6,NCBI_GP:CAL94071.1;Name=CAL94071.1;Note=Salmonella typhimurium shows an attractant response to citrate and a repellent response to phenol%2C and a chemoreceptor mediating these responses has been identified and named Tcp (taxis to citrate and away from phenol). Similar to sprot|MCPC_SALTY (32%25)and to trembl|Q82TM2. InterPro (IPR004089): Bacterial chemotaxis sensory transducer InterPro (IPR003660): HAMP InterPro (IPR004090): Methyl-accepting chemotaxis protein InterPro (IPR001610): PAC InterPro (IPR000014): PAS_domain Pfam (PF00672): HAMP Pfam (PF00015): MCPsignal Pfam (PF00785): PAC Pfam (PF00989):PAS TIGRFAMs (TIGR00229): sensory_box TMHMM reporting two TMH.%3B~Specificity unclear;gbkey=CDS;gene=tcp;product=putative citrate chemoreceptor protein;protein_id=CAL94071.1;transl_table=11
AM406670.1	EMBL	gene	1587301	1588254	.	+	.	ID=gene1489;Name=cheR2;gbkey=Gene;gene=cheR2;gene_biotype=protein_coding;locus_tag=azo1455
AM406670.1	EMBL	CDS	1587301	1588254	.	+	0	ID=cds1453;Parent=gene1489;Dbxref=EnsemblGenomes-Gn:azo1455,EnsemblGenomes-Tr:CAL94072,GOA:A1K5G7,InterPro:IPR000780,InterPro:IPR022641,InterPro:IPR022642,InterPro:IPR026024,InterPro:IPR029063,UniProtKB/TrEMBL:A1K5G7,NCBI_GP:CAL94072.1;Name=CAL94072.1;Note=Methylase of chemotaxis methyl-accepting proteins%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=cheR2;product=chemotaxis protein methyltransferase;protein_id=CAL94072.1;transl_table=11
AM406670.1	EMBL	gene	1588263	1589384	.	+	.	ID=gene1490;Name=cheB2;gbkey=Gene;gene=cheB2;gene_biotype=protein_coding;locus_tag=azo1456
AM406670.1	EMBL	CDS	1588263	1589384	.	+	0	ID=cds1454;Parent=gene1490;Dbxref=EnsemblGenomes-Gn:azo1456,EnsemblGenomes-Tr:CAL94073,GOA:A1K5G8,InterPro:IPR000673,InterPro:IPR001789,InterPro:IPR008248,InterPro:IPR011006,UniProtKB/TrEMBL:A1K5G8,NCBI_GP:CAL94073.1;Name=CAL94073.1;Note=Chemotaxis response regulator protein-glutamate methylesterase%2C catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by cheR.%3B~High confidence in function and specificity;gbkey=CDS;gene=cheB2;product=protein glutamate-methylesterase;protein_id=CAL94073.1;transl_table=11
AM406670.1	EMBL	gene	1589532	1591208	.	+	.	ID=gene1491;Name=azo1457;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1457
AM406670.1	EMBL	CDS	1589532	1591208	.	+	0	ID=cds1455;Parent=gene1491;Dbxref=EnsemblGenomes-Gn:azo1457,EnsemblGenomes-Tr:CAL94074,GOA:A1K5G9,InterPro:IPR003661,InterPro:IPR004089,UniProtKB/TrEMBL:A1K5G9,NCBI_GP:CAL94074.1;Name=CAL94074.1;Note=Methyl-accepting chemotaxis protein%2C%3B~Specificity unclear;gbkey=CDS;product=methyl accepting chemotaxis protein;protein_id=CAL94074.1;transl_table=11
AM406670.1	EMBL	gene	1591411	1592376	.	+	.	ID=gene1492;Name=cheV1;gbkey=Gene;gene=cheV1;gene_biotype=protein_coding;locus_tag=azo1458
AM406670.1	EMBL	CDS	1591411	1592376	.	+	0	ID=cds1456;Parent=gene1492;Dbxref=EnsemblGenomes-Gn:azo1458,EnsemblGenomes-Tr:CAL94075,GOA:A1K5H0,InterPro:IPR001789,InterPro:IPR002545,InterPro:IPR011006,InterPro:IPR024181,UniProtKB/TrEMBL:A1K5H0,NCBI_GP:CAL94075.1;Name=CAL94075.1;Note=Probable chemotaxis protein%2C CheW. IPR001789%3B Response_reg. Pfam: PF01584%3B CheW. PF00072%3B Response_reg. SMART: SM00260%3B CheW. SM00448%3B REC. Chemotaxis protein cheV. CHEMOTAXIS INVOLVES BOTH A PHOSPHORYLATION-DEPENDENT EXCITATION AND A METHYLATION-DEPENDENT ADAPTATION. CHEV AND CHEW FUNCTION TOGETHER TO COUPLE CHEA ACTIVATION TO METHYL-ACCEPTING CHEMOTAXIS PROTEIN RECEPTOR STATUS AND POSSIBLE CHEA-DEPENDENT PHOSPHORYLATION OF CHEV CONTRIBUTES TO ADAPTATION.%3B~High confidence in function and specificity;gbkey=CDS;gene=cheV1;product=probable chemotaxis protein CheV-like;protein_id=CAL94075.1;transl_table=11
AM406670.1	EMBL	gene	1592386	1593342	.	+	.	ID=gene1493;Name=cheV2;gbkey=Gene;gene=cheV2;gene_biotype=protein_coding;locus_tag=azo1459
AM406670.1	EMBL	CDS	1592386	1593342	.	+	0	ID=cds1457;Parent=gene1493;Dbxref=EnsemblGenomes-Gn:azo1459,EnsemblGenomes-Tr:CAL94076,GOA:A1K5H1,InterPro:IPR001789,InterPro:IPR002545,InterPro:IPR011006,InterPro:IPR024181,UniProtKB/TrEMBL:A1K5H1,NCBI_GP:CAL94076.1;Name=CAL94076.1;Note=Probable chemotaxis protein%2C CheW. IPR001789%3B Response_reg. Pfam: PF01584%3B CheW. PF00072%3B Response_reg. SMART: SM00260%3B CheW. SM00448%3B REC. Chemotaxis protein cheV. CHEMOTAXIS INVOLVES BOTH A PHOSPHORYLATION-DEPENDENT EXCITATION AND A METHYLATION-DEPENDENT ADAPTATION. CHEV AND CHEW FUNCTION TOGETHER TO COUPLE CHEA ACTIVATION TO METHYL-ACCEPTING CHEMOTAXIS PROTEIN RECEPTOR STATUS AND POSSIBLE CHEA-DEPENDENT PHOSPHORYLATION OF CHEV CONTRIBUTES TO ADAPTATION.%3B~High confidence in function and specificity;gbkey=CDS;gene=cheV2;product=probable chemotaxis protein CheV-like;protein_id=CAL94076.1;transl_table=11
AM406670.1	EMBL	gene	1593373	1593774	.	+	.	ID=gene1494;Name=cheY3;gbkey=Gene;gene=cheY3;gene_biotype=protein_coding;locus_tag=azo1460
AM406670.1	EMBL	CDS	1593373	1593774	.	+	0	ID=cds1458;Parent=gene1494;Dbxref=EnsemblGenomes-Gn:azo1460,EnsemblGenomes-Tr:CAL94077,GOA:A1K5H2,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1K5H2,NCBI_GP:CAL94077.1;Name=CAL94077.1;Note=Chemotaxis response regulator%2C Response_reg. Pfam: PF00072%3B Response_reg. SMART: SM00448%3B REC. Chemotaxis protein cheY. Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors. In its active (phosphorylated or acetylated) form cheY exhibits enhanced binding to a switch component fliM at the flagellar motor which induces a change from counterclockwise to clockwise flagellar rotation (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=cheY3;product=chemotaxis response regulator;protein_id=CAL94077.1;transl_table=11
AM406670.1	EMBL	gene	1593809	1594702	.	+	.	ID=gene1495;Name=cheZ;gbkey=Gene;gene=cheZ;gene_biotype=protein_coding;locus_tag=azo1461
AM406670.1	EMBL	CDS	1593809	1594702	.	+	0	ID=cds1459;Parent=gene1495;Dbxref=EnsemblGenomes-Gn:azo1461,EnsemblGenomes-Tr:CAL94078,GOA:A1K5H3,InterPro:IPR007439,UniProtKB/TrEMBL:A1K5H3,NCBI_GP:CAL94078.1;Name=CAL94078.1;Note=Chemotaxis protein CheZ%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=cheZ;product=chemotaxis protein CheZ;protein_id=CAL94078.1;transl_table=11
AM406670.1	EMBL	gene	1594779	1596674	.	+	.	ID=gene1496;Name=cheA3;gbkey=Gene;gene=cheA3;gene_biotype=protein_coding;locus_tag=azo1462
AM406670.1	EMBL	CDS	1594779	1596674	.	+	0	ID=cds1460;Parent=gene1496;Dbxref=EnsemblGenomes-Gn:azo1462,EnsemblGenomes-Tr:CAL94079,GOA:A1K5H4,InterPro:IPR002545,InterPro:IPR003594,InterPro:IPR004105,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,UniProtKB/TrEMBL:A1K5H4,NCBI_GP:CAL94079.1;Name=CAL94079.1;Note=Chemotaxis histidine kinase protein%2CATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR002545%3B CheW. IPR004105%3B H-kinase_dim. IPR005467%3B His_kinase. IPR008207%3B Hpt. IPR008208%3B Hpt_N. Pfam: PF01584%3B CheW. PF02895%3B H-kinase_dim. PF02518%3B HATPase_c. PF01627%3B Hpt. SMART: SM00260%3B CheW. SM00387%3B HATPase_c. SM00073%3B HPT. Chemotaxis protein cheA (EC 2.7.3.-). INVOLVED IN THE TRANSMISSION OF SENSORY SIGNALS FROM THE CHEMORECEPTORS TO THE FLAGELLAR MOTORS. CHEA IS AUTOPHOSPHORYLATED%3B IT CAN TRANSFER ITS PHOSPHATE GROUP TO EITHER CHEB OR CHEY.%3B~High confidence in function and specificity;gbkey=CDS;gene=cheA3;product=chemotaxis protein cheA;protein_id=CAL94079.1;transl_table=11
AM406670.1	EMBL	gene	1596794	1597105	.	+	.	ID=gene1497;Name=azo1463;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1463
AM406670.1	EMBL	CDS	1596794	1597105	.	+	0	ID=cds1461;Parent=gene1497;Dbxref=EnsemblGenomes-Gn:azo1463,EnsemblGenomes-Tr:CAL94080,InterPro:IPR021482,UniProtKB/TrEMBL:A1K5H5,NCBI_GP:CAL94080.1;Name=CAL94080.1;Note=Hypothetical protein%2C 31%25 identity (47%25 similarity) to TrEMBL:Q8KLF6 Coils2 program reports the presence of coiled-coil.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94080.1;transl_table=11
AM406670.1	EMBL	gene	1597121	1598236	.	-	.	ID=gene1498;Name=tal;gbkey=Gene;gene=tal;gene_biotype=protein_coding;locus_tag=azo1464
AM406670.1	EMBL	CDS	1597121	1598236	.	-	0	ID=cds1462;Parent=gene1498;Dbxref=EnsemblGenomes-Gn:azo1464,EnsemblGenomes-Tr:CAL94081,GOA:A1K5H6,InterPro:IPR001585,InterPro:IPR004732,InterPro:IPR013785,InterPro:IPR018225,UniProtKB/TrEMBL:A1K5H6,NCBI_GP:CAL94081.1;Name=CAL94081.1;Note=Transaldolase%2C Tal%2C invovled in the pentose phosphate pathway%2C nonoxidative part. This enzyme is important for the balance of metabolites in the pentose-phosphate pathway.Belongs to the transaldolase family%2Csubfamily 2. 37%25 Tal_mycobact.IPR001585%3B Transaldolase. Pfam:PF00923%3B Transaldolase%3B 1. TIGRFAMs:TIGR00876%3B tal_mycobact%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=tal;product=putative transaldolase;protein_id=CAL94081.1;transl_table=11
AM406670.1	EMBL	gene	1598208	1598990	.	-	.	ID=gene1499;Name=azo1465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1465
AM406670.1	EMBL	CDS	1598208	1598990	.	-	0	ID=cds1463;Parent=gene1499;Dbxref=EnsemblGenomes-Gn:azo1465,EnsemblGenomes-Tr:CAL94082,GOA:A1K5H7,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR020103,UniProtKB/TrEMBL:A1K5H7,NCBI_GP:CAL94082.1;Name=CAL94082.1;Note=tRNA pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-65 in transfer RNAs%3B~High confidence in function and specificity%3B~ORF3;gbkey=CDS;product=hypothetical protein;protein_id=CAL94082.1;transl_table=11
AM406670.1	EMBL	gene	1599073	1599657	.	-	.	ID=gene1500;Name=azo1466;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1466
AM406670.1	EMBL	CDS	1599073	1599657	.	-	0	ID=cds1464;Parent=gene1500;Dbxref=EnsemblGenomes-Gn:azo1466,EnsemblGenomes-Tr:CAL94083,GOA:A1K5H8,InterPro:IPR001189,InterPro:IPR019831,InterPro:IPR019832,InterPro:IPR019833,UniProtKB/TrEMBL:A1K5H8,NCBI_GP:CAL94083.1;Name=CAL94083.1;Note=SodB: Superoxide dismutase [Fe] (EC 1.15.1.1).Catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. 76%25 SODismutase. Pfam:PF02777%3B Sod_Fe_C%3B 1. PF00081%3B Sod_Fe_N%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;product=putative superoxide dismutase;protein_id=CAL94083.1;transl_table=11
AM406670.1	EMBL	gene	1599814	1601193	.	-	.	ID=gene1501;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=azo1467
AM406670.1	EMBL	CDS	1599814	1601193	.	-	0	ID=cds1465;Parent=gene1501;Dbxref=EnsemblGenomes-Gn:azo1467,EnsemblGenomes-Tr:CAL94084,GOA:A1K5H9,InterPro:IPR003753,InterPro:IPR020579,InterPro:IPR025824,UniProtKB/TrEMBL:A1K5H9,NCBI_GP:CAL94084.1;Name=CAL94084.1;Note=Probable exodeoxyribonuclease VII large subunit . Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides which are then degraded further into small acid-soluble oligonucleotides (By similarity). TIGRFAM: xseA: exodeoxyribonuclease VII large.%3B~High confidence in function and specificity;gbkey=CDS;gene=xseA;product=Exodeoxyribonuclease VII;protein_id=CAL94084.1;transl_table=11
AM406670.1	EMBL	gene	1601484	1602092	.	+	.	ID=gene1502;Name=exbB3;gbkey=Gene;gene=exbB3;gene_biotype=protein_coding;locus_tag=azo1468
AM406670.1	EMBL	CDS	1601484	1602092	.	+	0	ID=cds1466;Parent=gene1502;Dbxref=EnsemblGenomes-Gn:azo1468,EnsemblGenomes-Tr:CAL94085,GOA:A1K5I0,InterPro:IPR002898,UniProtKB/TrEMBL:A1K5I0,NCBI_GP:CAL94085.1;Name=CAL94085.1;Note=conserved hypothetical biopolymer transport protein ExbB. Homology to exbB of B. pertussis. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. Pfam: MotA/TolQ/ExbB proton channel family no signal peptide probable 3 TMHS%3B~Family membership;gbkey=CDS;gene=exbB3;product=conserved hypothetical biopolymer transport protein ExbB;protein_id=CAL94085.1;transl_table=11
AM406670.1	EMBL	gene	1602104	1602526	.	+	.	ID=gene1503;Name=exbD4;gbkey=Gene;gene=exbD4;gene_biotype=protein_coding;locus_tag=azo1469
AM406670.1	EMBL	CDS	1602104	1602526	.	+	0	ID=cds1467;Parent=gene1503;Dbxref=EnsemblGenomes-Gn:azo1469,EnsemblGenomes-Tr:CAL94086,GOA:A1K5I1,InterPro:IPR003400,UniProtKB/TrEMBL:A1K5I1,NCBI_GP:CAL94086.1;Name=CAL94086.1;Note=Putative biopolymer transport exbD2 protein. Homology to exbD2 of V. choloera of 31%25 ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH%3B~Family membership;gbkey=CDS;gene=exbD4;product=putative biopolymer transport protein ExbD;protein_id=CAL94086.1;transl_table=11
AM406670.1	EMBL	gene	1602530	1603555	.	+	.	ID=gene1504;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=azo1470
AM406670.1	EMBL	CDS	1602530	1603555	.	+	0	ID=cds1468;Parent=gene1504;Dbxref=EnsemblGenomes-Gn:azo1470,EnsemblGenomes-Tr:CAL94087,GOA:A1K5I2,InterPro:IPR003758,InterPro:IPR027417,NCBI_GP:CAL94087.1;Name=CAL94087.1;Note=Probable tetraacyldisaccharide 4-kinase. Homology to lpxK of E. coli of 41%25 (sprot|LPXK_ECOLI). Transfers the gamma-phosphate of ATP to the 4-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 14-bis-phosphate (lipid IVA) (By similarity). InterPro: Tetraacyldisaccharide-1-P 4-kinase(IPR003758) Tigrfam: lpxK: tetraacyldisaccharide 4-kinase Pfam: Tetraacyldisaccharide-1-P 4-kinase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=lpxK;product=probable tetraacyldisaccharide 4'-kinase;protein_id=CAL94087.1;transl_table=11
AM406670.1	EMBL	gene	1603536	1603724	.	+	.	ID=gene1505;Name=ycaR;gbkey=Gene;gene=ycaR;gene_biotype=protein_coding;locus_tag=azo1471
AM406670.1	EMBL	CDS	1603536	1603724	.	+	0	ID=cds1469;Parent=gene1505;Dbxref=EnsemblGenomes-Gn:azo1471,EnsemblGenomes-Tr:CAL94088,InterPro:IPR005651,NCBI_GP:CAL94088.1;Name=CAL94088.1;Note=Putative inner membrane protein [ycaR]%2C 66%25 identity (85%25 similarity) to SwissProt%3BP75844(E.coli) and 65%25 identity to TrEMBL%3BQ7CQT7. Has PF03966:Protein of unknown function (DUF343)%3BThis family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Signal Peptide or TMH not present.%3B~Function unclear;gbkey=CDS;gene=ycaR;product=conserved hypothetical protein;protein_id=CAL94088.1;transl_table=11
AM406670.1	EMBL	gene	1603733	1604506	.	+	.	ID=gene1506;Name=kdsB;gbkey=Gene;gene=kdsB;gene_biotype=protein_coding;locus_tag=azo1472
AM406670.1	EMBL	CDS	1603733	1604506	.	+	0	ID=cds1470;Parent=gene1506;Dbxref=EnsemblGenomes-Gn:azo1472,EnsemblGenomes-Tr:CAL94089,GOA:A1K5I4,InterPro:IPR003329,InterPro:IPR004528,InterPro:IPR029044,NCBI_GP:CAL94089.1;Name=CAL94089.1;Note=Probable 3-deoxy-manno-octulosonate cytidylyltransferase. Homology to kdsB of E. coli of 57%25 (sprot|KDSB_ECOLI). Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria (By similarity). InterPro: 3-deoxy-D-manno-octulosonate cytidylyltransferase (IPR004528)%3B cytidylyltransferase (CMP-NeuAc synthetase) (IPR003329) Tigrfam: kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase Pfam: Cytidylyltransferase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=kdsB;product=probable 3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=CAL94089.1;transl_table=11
AM406670.1	EMBL	gene	1604626	1605279	.	+	.	ID=gene1507;Name=adk;gbkey=Gene;gene=adk;gene_biotype=protein_coding;locus_tag=azo1473
AM406670.1	EMBL	CDS	1604626	1605279	.	+	0	ID=cds1471;Parent=gene1507;Dbxref=EnsemblGenomes-Gn:azo1473,EnsemblGenomes-Tr:CAL94090,GOA:A1K5I5,InterPro:IPR000850,InterPro:IPR006259,InterPro:IPR007862,InterPro:IPR027417,NCBI_GP:CAL94090.1;Name=CAL94090.1;Note=Adenylate kinase (ATP-AMP transphosphorylase). InterPro: Adenylate kinase%3B~High confidence in function and specificity;gbkey=CDS;gene=adk;product=adenylate kinase;protein_id=CAL94090.1;transl_table=11
AM406670.1	EMBL	gene	1605395	1606660	.	+	.	ID=gene1508;Name=pfkA;gbkey=Gene;gene=pfkA;gene_biotype=protein_coding;locus_tag=azo1474
AM406670.1	EMBL	CDS	1605395	1606660	.	+	0	ID=cds1472;Parent=gene1508;Dbxref=EnsemblGenomes-Gn:azo1474,EnsemblGenomes-Tr:CAL94091,GOA:A1K5I6,InterPro:IPR000023,InterPro:IPR011404,InterPro:IPR022953,UniProtKB/TrEMBL:A1K5I6,NCBI_GP:CAL94091.1;Name=CAL94091.1;Note=6-phosphofructokinase 1(Phosphofructokinase 1) (Phosphohexokinase 1) (ATP-PFK)%2C PfkA. Play a key control step of glycolysis. Catalytic activity: atp + d-fructose 6-phosphate %3D adp + d- fructose 1%2C6-bisphosphate. Belongs to the phosphofructokinase family. 26%25 Ppfruckinase.InterPro: Phosphofructokinase Pfam:PF00365%3B PFK%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=pfkA;product=putative 6-phosphofructokinase;protein_id=CAL94091.1;transl_table=11
AM406670.1	EMBL	gene	1606678	1608399	.	+	.	ID=gene1509;Name=ggt;gbkey=Gene;gene=ggt;gene_biotype=protein_coding;locus_tag=azo1475
AM406670.1	EMBL	CDS	1606678	1608399	.	+	0	ID=cds1473;Parent=gene1509;Dbxref=EnsemblGenomes-Gn:azo1475,EnsemblGenomes-Tr:CAL94092,GOA:A1K5I7,InterPro:IPR000101,InterPro:IPR029055,UniProtKB/TrEMBL:A1K5I7,NCBI_GP:CAL94092.1;Name=CAL94092.1;Note=Gamma-glutamyltranspeptidase catalyzes the transfer of the gamma-glutamyl moiety of glutathione to an acceptor that may be an amino acid%2C a peptide or water (forming glutamate). GGT plays a key role in the gamma-glutamyl cycle%2C a pathway for the synthesis and degradation of glutathione and drug and xenobiotic detoxification. Similar to trembl|Q88H30 (43%25)and to trembl|Q8UJH0 (36%25). TIGRfam (TIGR00066): Gamma-glutamyltranspeptidase Pfam (PF01019): Gamma-glutamyltranspeptidase SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=ggt;product=Ggt protein;protein_id=CAL94092.1;transl_table=11
AM406670.1	EMBL	gene	1608393	1610963	.	-	.	ID=gene1510;Name=azo1476;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1476
AM406670.1	EMBL	CDS	1608393	1610963	.	-	0	ID=cds1474;Parent=gene1510;Dbxref=EnsemblGenomes-Gn:azo1476,EnsemblGenomes-Tr:CAL94093,InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR029787,UniProtKB/TrEMBL:A1K5I8,NCBI_GP:CAL94093.1;Name=CAL94093.1;Note=Conserved hypothetical membrane protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94093.1;transl_table=11
AM406670.1	EMBL	gene	1611123	1611704	.	-	.	ID=gene1511;Name=drgA;gbkey=Gene;gene=drgA;gene_biotype=protein_coding;locus_tag=azo1477
AM406670.1	EMBL	CDS	1611123	1611704	.	-	0	ID=cds1475;Parent=gene1511;Dbxref=EnsemblGenomes-Gn:azo1477,EnsemblGenomes-Tr:CAL94094,GOA:A1K5I9,InterPro:IPR003680,InterPro:IPR029039,UniProtKB/TrEMBL:A1K5I9,NCBI_GP:CAL94094.1;Name=CAL94094.1;Note=Putative NAD(P)H oxidoreductase HI1544 (EC 1.6.5.2 ). trembl:Q88J60: 64%25 identity%3B 80%25 similarity This family consists of bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC: 1.6.5.2 that catalyses the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species [1]. This enzyme uses a FAD co-factor InterPro:IPR003680%3B NADHdh_2. Pfam:PF02525%3B Flavodoxin_2 SignalP predicted signal peptide present No transmembrane helices (TMHMM predicted)%3B~High confidence in function and specificity;gbkey=CDS;gene=drgA;product=probable NAD(P)H quinone oxidoreductase;protein_id=CAL94094.1;transl_table=11
AM406670.1	EMBL	gene	1611764	1612186	.	-	.	ID=gene1512;Name=azo1478;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1478
AM406670.1	EMBL	CDS	1611764	1612186	.	-	0	ID=cds1476;Parent=gene1512;Dbxref=EnsemblGenomes-Gn:azo1478,EnsemblGenomes-Tr:CAL94095,GOA:A1K5J0,InterPro:IPR000551,InterPro:IPR009061,UniProtKB/TrEMBL:A1K5J0,NCBI_GP:CAL94095.1;Name=CAL94095.1;Note=Probable MerR-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=probable MerR-family transcriptional regulator;protein_id=CAL94095.1;transl_table=11
AM406670.1	EMBL	gene	1612279	1613682	.	+	.	ID=gene1513;Name=gltX2;gbkey=Gene;gene=gltX2;gene_biotype=protein_coding;locus_tag=azo1479
AM406670.1	EMBL	CDS	1612279	1613682	.	+	0	ID=cds1477;Parent=gene1513;Dbxref=EnsemblGenomes-Gn:azo1479,EnsemblGenomes-Tr:CAL94096,GOA:A1K5J1,InterPro:IPR000924,InterPro:IPR001412,InterPro:IPR004527,InterPro:IPR008925,InterPro:IPR014729,InterPro:IPR020058,InterPro:IPR020061,InterPro:IPR020751,NCBI_GP:CAL94096.1;Name=CAL94096.1;Note=Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase) (GluRS). gltX_bact: glutamyl-tRNA synthetase%3B~High confidence in function and specificity;gbkey=CDS;gene=gltX2;product=Glutamate-tRNA ligase;protein_id=CAL94096.1;transl_table=11
AM406670.1	EMBL	gene	1613749	1614060	.	-	.	ID=gene1514;Name=azo1480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1480
AM406670.1	EMBL	CDS	1613749	1614060	.	-	0	ID=cds1478;Parent=gene1514;Dbxref=EnsemblGenomes-Gn:azo1480,EnsemblGenomes-Tr:CAL94097,InterPro:IPR011322,UniProtKB/TrEMBL:A1K5J2,NCBI_GP:CAL94097.1;Name=CAL94097.1;Note=Probable Nitrogen regulatory protein P-II 1. Could be involved in the regulation of nitrogen fixation.Belongs to the P(II) protein family.55%25 similarity with Methanothermobacter thermautotrophicus%2CTrEMBL:O26758 Pfam:PF00543%2C InterPro:IPR002332%2CIPR002187 No Signal peptide present. No TMH reported.;gbkey=CDS;product=probable nitrogen regulatory protein P-II;protein_id=CAL94097.1;transl_table=11
AM406670.1	EMBL	gene	1614063	1615001	.	-	.	ID=gene1515;Name=azo1481;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1481
AM406670.1	EMBL	CDS	1614063	1615001	.	-	0	ID=cds1479;Parent=gene1515;Dbxref=EnsemblGenomes-Gn:azo1481,EnsemblGenomes-Tr:CAL94098,InterPro:IPR010293,UniProtKB/TrEMBL:A1K5J3,NCBI_GP:CAL94098.1;Name=CAL94098.1;Note=Conserved hypothetical membrane protein. Homology to ttc139 of T. termophilus of 49%25 (trembl|Q72LC0). no domains no singal peptide 8 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94098.1;transl_table=11
AM406670.1	EMBL	gene	1615045	1616952	.	-	.	ID=gene1516;Name=yfcK;gbkey=Gene;gene=yfcK;gene_biotype=protein_coding;locus_tag=azo1482
AM406670.1	EMBL	CDS	1615045	1616952	.	-	0	ID=cds1480;Parent=gene1516;Dbxref=EnsemblGenomes-Gn:azo1482,EnsemblGenomes-Tr:CAL94099,GOA:A1K5J4,InterPro:IPR006076,InterPro:IPR008471,InterPro:IPR017610,InterPro:IPR023032,InterPro:IPR029063,NCBI_GP:CAL94099.1;Name=CAL94099.1;Note=Conserved hypothetical protein[putative to yfcK]%2C39%25 identity (50%25 similarity) to SwissProt%3BQ9HYF0. SwissProt%3BQ8FFH0(34%25 identity) High homology suggesting to ycfK protein. Has PF01266%3BFAD dependent oxidoreductase%3B(IPR006076 Fad_oxred):This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5%2C Sarcosine oxidase beta subunit EC:1.5.3.1%2C D-alanine oxidase EC:1.4.99.1%2C D-aspartate oxidase EC:1.4.3.1. Has PF05430(IPR008471):Protein of unknown function (DUF752)%3BThis family contains several uncharacterised bacterial proteins with no known function. No signal peptide or TMH present.%3B~Specificity unclear;gbkey=CDS;gene=yfcK;product=D-amino-acid oxidase;protein_id=CAL94099.1;transl_table=11
AM406670.1	EMBL	gene	1617116	1619113	.	-	.	ID=gene1517;Name=azo1483;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1483
AM406670.1	EMBL	CDS	1617116	1619113	.	-	0	ID=cds1481;Parent=gene1517;Dbxref=EnsemblGenomes-Gn:azo1483,EnsemblGenomes-Tr:CAL94100,GOA:A1K5J5,InterPro:IPR004843,InterPro:IPR006179,InterPro:IPR008334,InterPro:IPR029052,UniProtKB/TrEMBL:A1K5J5,NCBI_GP:CAL94100.1;Name=CAL94100.1;Note=Putative 5'-nucleotidase Has Signal Peptide. Has PF02872%2C 5'-nucleotidase%2C C-terminal domain%3B IPR008334%2C 5'-Nucleotdase_C%3B 5'-nucleotidases are enzymes that catalyze the hydrolysis ofphosphate esterified at carbon 5' of the ribose and deoxyribose portions of nucleotide molecules. 5'-nucleotidase is a ubiquitous enzyme found in a wide variety of species and which occurs in different cellular locations. The extracellular 5'-nucleotidase from mammals and electric ray isozyme is a homodimeric disulphide-bonded glycoprotein attached to the membrane by a GPI-anchor%2C and requires zinc for its activity. Has PF00149%2CCalcineurin-like phosphoesterase%3B IPR004843%2C M-pesterase%3B This family includes a diverse range of phosphoesterases%2Cincluding protein phosphoserine phosphatases%2Cnucleotidases%2C sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD P13457 or yeast MRE11 P32829. The most conserved regions in this superfamily centre around the metal chelating residues.%3B~High confidence in function and specificity;gbkey=CDS;product=5'-nucleotidase;protein_id=CAL94100.1;transl_table=11
AM406670.1	EMBL	gene	1619180	1622011	.	-	.	ID=gene1518;Name=nucH;gbkey=Gene;gene=nucH;gene_biotype=protein_coding;locus_tag=azo1484
AM406670.1	EMBL	CDS	1619180	1622011	.	-	0	ID=cds1482;Parent=gene1518;Dbxref=EnsemblGenomes-Gn:azo1484,EnsemblGenomes-Tr:CAL94101,GOA:A1K5J6,InterPro:IPR001322,InterPro:IPR005135,InterPro:IPR016202,UniProtKB/TrEMBL:A1K5J6,NCBI_GP:CAL94101.1;Name=CAL94101.1;Note=Putative extracellular nuclease. Homology to nucH of A. hydrophila of 33%25 (trembl|Q44070) Tigrfam: xth: exodeoxyribonuclease III (xth) Pfam: Endonuclease/ Exonuclease/ Phoshatase family singal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=nucH;product=putative extracellular nuclease;protein_id=CAL94101.1;transl_table=11
AM406670.1	EMBL	gene	1622218	1622907	.	+	.	ID=gene1519;Name=azo1485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1485
AM406670.1	EMBL	CDS	1622218	1622907	.	+	0	ID=cds1483;Parent=gene1519;Dbxref=EnsemblGenomes-Gn:azo1485,EnsemblGenomes-Tr:CAL94102,InterPro:IPR009698,UniProtKB/TrEMBL:A1K5J7,NCBI_GP:CAL94102.1;Name=CAL94102.1;Note=Conserved hypothetical membrane protein. Homology ebA4071 of Azoarcus sp. EbN1 of 61%25 (gnl|keqq|eba:ebA4071(KEGG)). Has PF06930%2C Protein of unknown function (DUF1282)%3B IPR009698%3B This family consists of several hypothetical proteins of around 200 residues in length. The function of this family is unknown although a number of family members are thought to be putative membrane proteins. no signal peptide. 5 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94102.1;transl_table=11
AM406670.1	EMBL	gene	1622923	1624122	.	-	.	ID=gene1520;Name=azo1486;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1486
AM406670.1	EMBL	CDS	1622923	1624122	.	-	0	ID=cds1484;Parent=gene1520;Dbxref=EnsemblGenomes-Gn:azo1486,EnsemblGenomes-Tr:CAL94103,InterPro:IPR001633,InterPro:IPR003018,InterPro:IPR029016,UniProtKB/TrEMBL:A1K5J8,NCBI_GP:CAL94103.1;Name=CAL94103.1;Note=Conserved hypothetical signaling protein. Homology to TdenA01000705 of Thiobacillus denitrificans of 61%25 (gi|52008401|ref|ZP_00335778.1|(NBCI ENTREZ)). Pfam: PF01590 GAF domain. PF00563 EAL domain. No signal peptide. No TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical signaling protein;protein_id=CAL94103.1;transl_table=11
AM406670.1	EMBL	gene	1624335	1625837	.	-	.	ID=gene1521;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=azo1487
AM406670.1	EMBL	CDS	1624335	1625837	.	-	0	ID=cds1485;Parent=gene1521;Dbxref=EnsemblGenomes-Gn:azo1487,EnsemblGenomes-Tr:CAL94104,GOA:A1K5J9,InterPro:IPR002313,InterPro:IPR004364,InterPro:IPR004365,InterPro:IPR006195,InterPro:IPR012340,InterPro:IPR018149,InterPro:IPR018150,NCBI_GP:CAL94104.1;Name=CAL94104.1;Note=Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS).%3B~High confidence in function and specificity;gbkey=CDS;gene=lysS;product=lysyl-tRNA synthetase;protein_id=CAL94104.1;transl_table=11
AM406670.1	EMBL	gene	1625995	1626372	.	+	.	ID=gene1522;Name=azo1488;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1488
AM406670.1	EMBL	CDS	1625995	1626372	.	+	0	ID=cds1486;Parent=gene1522;Dbxref=EnsemblGenomes-Gn:azo1488,EnsemblGenomes-Tr:CAL94105,UniProtKB/TrEMBL:A1K5K0,NCBI_GP:CAL94105.1;Name=CAL94105.1;Note=Conserved hypothetical protein. Homology to Daro03003756 of Dechloromonas aromatica of 53%25 (gi|41722684|ref|ZP_00149673.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94105.1;transl_table=11
AM406670.1	EMBL	gene	1626384	1626902	.	-	.	ID=gene1523;Name=azo1489;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1489
AM406670.1	EMBL	CDS	1626384	1626902	.	-	0	ID=cds1487;Parent=gene1523;Dbxref=EnsemblGenomes-Gn:azo1489,EnsemblGenomes-Tr:CAL94106,InterPro:IPR002589,UniProtKB/TrEMBL:A1K5K1,NCBI_GP:CAL94106.1;Name=CAL94106.1;Note=Hypothetical protein CT2219. SPROT:Q8KAE4: 65%25 identity%3B 78%25 similarity. TREMBL:Q7NS63: 60%25 identity%2C 72%25 similarity putative ACR related to the C-terminal domain of histone macroH2A1 This domain is found in a number of protein associated with DNA and/or RNA unwinding InterPro%3B IPR002589%3B A1pp. Pfam%3B PF01661%3B A1pp%3B 1. SMART%3B SM00506%3B A1pp non-secretory protein with no signal peptide (SignalP predicted). No transmembrane helices (TMHMM predicted)%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94106.1;transl_table=11
AM406670.1	EMBL	gene	1627018	1630287	.	-	.	ID=gene1524;Name=azo1490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1490
AM406670.1	EMBL	CDS	1627018	1630287	.	-	0	ID=cds1488;Parent=gene1524;Dbxref=EnsemblGenomes-Gn:azo1490,EnsemblGenomes-Tr:CAL94107,GOA:A1K5K2,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR001789,InterPro:IPR003018,InterPro:IPR011006,InterPro:IPR029016,InterPro:IPR029787,UniProtKB/TrEMBL:A1K5K2,NCBI_GP:CAL94107.1;Name=CAL94107.1;Note=Conserved hypothetical signaling protein. Homology to ebA6472 Azoarcus sp. EbN1 of 36%25 (gnl|keqq|eba:ebA6472(KEGG)). InterPro: IPR000160 GGDEF. IPR000014 PAS. IPR000700 PAS-assoc_C. IPR001789 Response_reg. Pfam: PF00990 GGDEF domain. PF00989 PAS domain. PF00785 PAC motif. PF01590 GAF domain. PF00563 EAL domain. PF00072 Response_reg. TIGRFAM:TIGR00229 PAS domain S-box. TIGR00254 putative diguanylate cyclase (GGDEF) domain. No signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical signaling protein;protein_id=CAL94107.1;transl_table=11
AM406670.1	EMBL	gene	1630292	1630687	.	-	.	ID=gene1525;Name=divK;gbkey=Gene;gene=divK;gene_biotype=protein_coding;locus_tag=azo1491
AM406670.1	EMBL	CDS	1630292	1630687	.	-	0	ID=cds1489;Parent=gene1525;Dbxref=EnsemblGenomes-Gn:azo1491,EnsemblGenomes-Tr:CAL94108,GOA:A1K5K3,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1K5K3,NCBI_GP:CAL94108.1;Name=CAL94108.1;Note=Probable polar differentiation response regulator%2C%3B~Family membership;gbkey=CDS;gene=divK;product=probable polar differentiation response regulator;protein_id=CAL94108.1;transl_table=11
AM406670.1	EMBL	gene	1630684	1632525	.	-	.	ID=gene1526;Name=divJ;gbkey=Gene;gene=divJ;gene_biotype=protein_coding;locus_tag=azo1492
AM406670.1	EMBL	CDS	1630684	1632525	.	-	0	ID=cds1490;Parent=gene1526;Dbxref=EnsemblGenomes-Gn:azo1492,EnsemblGenomes-Tr:CAL94109,GOA:A1K5K4,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR013767,UniProtKB/TrEMBL:A1K5K4,NCBI_GP:CAL94109.1;Name=CAL94109.1;Note=Putative histidine protein kinase%2C%3B~Specificity unclear;gbkey=CDS;gene=divJ;product=putative histidine protein kinase;protein_id=CAL94109.1;transl_table=11
AM406670.1	EMBL	gene	1632830	1634692	.	-	.	ID=gene1527;Name=azo1493;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1493
AM406670.1	EMBL	CDS	1632830	1634692	.	-	0	ID=cds1491;Parent=gene1527;Dbxref=EnsemblGenomes-Gn:azo1493,EnsemblGenomes-Tr:CAL94110,GOA:A1K5K5,InterPro:IPR001915,UniProtKB/TrEMBL:A1K5K5,NCBI_GP:CAL94110.1;Name=CAL94110.1;Note=Conserved hypothetical membrane protein. Homology to Avar03001212 of Anabaena variabilis of 34%25 (gi|53765559|ref|ZP_00161954.2|(NBCI ENTREZ)). Pfam: Peptidase family M48. 2 TMHs. no signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94110.1;transl_table=11
AM406670.1	EMBL	gene	1634819	1637611	.	-	.	ID=gene1528;Name=azo1494;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1494
AM406670.1	EMBL	CDS	1634819	1637611	.	-	0	ID=cds1492;Parent=gene1528;Dbxref=EnsemblGenomes-Gn:azo1494,EnsemblGenomes-Tr:CAL94111,GOA:A1K5K6,InterPro:IPR003395,InterPro:IPR027417,UniProtKB/TrEMBL:A1K5K6,NCBI_GP:CAL94111.1;Name=CAL94111.1;Note=Similarity to hypothetical protein in C. violaceum.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94111.1;transl_table=11
AM406670.1	EMBL	gene	1637617	1638315	.	-	.	ID=gene1529;Name=azo1495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1495
AM406670.1	EMBL	CDS	1637617	1638315	.	-	0	ID=cds1493;Parent=gene1529;Dbxref=EnsemblGenomes-Gn:azo1495,EnsemblGenomes-Tr:CAL94112,UniProtKB/TrEMBL:A1K5K7,NCBI_GP:CAL94112.1;Name=CAL94112.1;Note=Conserved hypothetical protein. Homology to CV0860 of Chromobacterium violaceum of 50%25 (trembl: Q7NZR1). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94112.1;transl_table=11
AM406670.1	EMBL	gene	1638326	1639639	.	-	.	ID=gene1530;Name=azo1496;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1496
AM406670.1	EMBL	CDS	1638326	1639639	.	-	0	ID=cds1494;Parent=gene1530;Dbxref=EnsemblGenomes-Gn:azo1496,EnsemblGenomes-Tr:CAL94113,UniProtKB/TrEMBL:A1K5K8,NCBI_GP:CAL94113.1;Name=CAL94113.1;Note=Conserved Hypothetical protein Signal Peptide present. Has Prosite PS00380%3B RHODANESE_1%3B Rhodanese (thiosulfate sulfurtransferase) (EC 2.8.1.1)is an enzyme which catalyzes the transfer of the sulfane atom of thiosulfate to cyanide%2C to form sulfite and thiocyanate. In vertebrates%2C rhodanese is a mitochondrial enzyme of about 300 amino-acid residues involved in forming iron-sulfur complexes and cyanide detoxification. A cysteine residue takes part in the catalytic mechanism.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94113.1;transl_table=11
AM406670.1	EMBL	gene	1639694	1640815	.	-	.	ID=gene1531;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;locus_tag=azo1497
AM406670.1	EMBL	CDS	1639694	1640815	.	-	0	ID=cds1495;Parent=gene1531;Dbxref=EnsemblGenomes-Gn:azo1497,EnsemblGenomes-Tr:CAL94114,GOA:A1K5K9,InterPro:IPR000352,InterPro:IPR004374,InterPro:IPR005139,InterPro:IPR014720,InterPro:IPR020853,UniProtKB/TrEMBL:A1K5K9,NCBI_GP:CAL94114.1;Name=CAL94114.1;Note=Peptide chain release factor 2 (RF-2). Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.%3B~High confidence in function and specificity;gbkey=CDS;gene=prfB;product=peptide chain release factor;protein_id=CAL94114.1;transl_table=11
AM406670.1	EMBL	gene	1640905	1641321	.	+	.	ID=gene1532;Name=azo1498;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1498
AM406670.1	EMBL	CDS	1640905	1641321	.	+	0	ID=cds1496;Parent=gene1532;Dbxref=EnsemblGenomes-Gn:azo1498,EnsemblGenomes-Tr:CAL94115,InterPro:IPR021279,UniProtKB/TrEMBL:A1K5L0,NCBI_GP:CAL94115.1;Name=CAL94115.1;Note=Conserved hypothetical membrane protein Homology to an orf of C. violaceum of 41%25 (trembl|Q7NSF3(SRS)) No domains predicted Signal Peptide present. TMHMM2 reporting 2 TMH's present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94115.1;transl_table=11
AM406670.1	EMBL	gene	1641332	1641760	.	-	.	ID=gene1533;Name=azo1499;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1499
AM406670.1	EMBL	CDS	1641332	1641760	.	-	0	ID=cds1497;Parent=gene1533;Dbxref=EnsemblGenomes-Gn:azo1499,EnsemblGenomes-Tr:CAL94116,GOA:A1K5L1,InterPro:IPR001310,InterPro:IPR011146,UniProtKB/TrEMBL:A1K5L1,NCBI_GP:CAL94116.1;Name=CAL94116.1;Note=TREMBL:Q8XSIO: 58%25 identity%2C 73%25 similarity Hypothetical HIT-like protein Rv0759c/MT0784/Mb0782c. InterPro:IPR001310%3B HIT. Pfam: PF01230%3B HIT%3B 1. PRINTS: PR00332%3B HISTRIAD InterPro: HIT (Histidine triad) family hupD: hydrogenase expression/formation pr%3B~Family membership;gbkey=CDS;product=probable HIT family protein;protein_id=CAL94116.1;transl_table=11
AM406670.1	EMBL	gene	1641939	1642796	.	+	.	ID=gene1534;Name=azo1500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1500
AM406670.1	EMBL	CDS	1641939	1642796	.	+	0	ID=cds1498;Parent=gene1534;Dbxref=EnsemblGenomes-Gn:azo1500,EnsemblGenomes-Tr:CAL94117,InterPro:IPR006597,InterPro:IPR011990,UniProtKB/TrEMBL:A1K5L2,NCBI_GP:CAL94117.1;Name=CAL94117.1;Note=Hypothetical secreted protein. Weak homology with hits in the database. Signal Peptide present. No domains predicted. No TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94117.1;transl_table=11
AM406670.1	EMBL	gene	1642934	1643425	.	+	.	ID=gene1535;Name=azo1501;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1501
AM406670.1	EMBL	CDS	1642934	1643425	.	+	0	ID=cds1499;Parent=gene1535;Dbxref=EnsemblGenomes-Gn:azo1501,EnsemblGenomes-Tr:CAL94118,InterPro:IPR006597,InterPro:IPR011990,UniProtKB/TrEMBL:A1K5L3,NCBI_GP:CAL94118.1;Name=CAL94118.1;Note=Hypothetical protein. No homology to the data bank. Has 2 copies of SMART%3BSM00671%2C SEL1%2C Sel1-like repeats.These represent a subfamily of TPR (tetratricopeptide repeat) sequences. No TMHs. No signal peptide.;gbkey=CDS;product=hypothetical protein;protein_id=CAL94118.1;transl_table=11
AM406670.1	EMBL	gene	1643422	1643817	.	+	.	ID=gene1536;Name=azo1502;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1502
AM406670.1	EMBL	CDS	1643422	1643817	.	+	0	ID=cds1500;Parent=gene1536;Dbxref=EnsemblGenomes-Gn:azo1502,EnsemblGenomes-Tr:CAL94119,UniProtKB/TrEMBL:A1K5L4,NCBI_GP:CAL94119.1;Name=CAL94119.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. signal peptide. 3 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94119.1;transl_table=11
AM406670.1	EMBL	gene	1644105	1644740	.	-	.	ID=gene1537;Name=azo1503;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1503
AM406670.1	EMBL	CDS	1644105	1644740	.	-	0	ID=cds1501;Parent=gene1537;Dbxref=EnsemblGenomes-Gn:azo1503,EnsemblGenomes-Tr:CAL94120,GOA:A1K5L5,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K5L5,NCBI_GP:CAL94120.1;Name=CAL94120.1;Note=Putative two-component response regulator%2C%3B~Family membership;gbkey=CDS;product=putative two-component response regulator;protein_id=CAL94120.1;transl_table=11
AM406670.1	EMBL	gene	1644737	1646212	.	-	.	ID=gene1538;Name=moxY;gbkey=Gene;gene=moxY;gene_biotype=protein_coding;locus_tag=azo1504
AM406670.1	EMBL	CDS	1644737	1646212	.	-	0	ID=cds1502;Parent=gene1538;Dbxref=EnsemblGenomes-Gn:azo1504,EnsemblGenomes-Tr:CAL94121,GOA:A1K5L6,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR011712,UniProtKB/TrEMBL:A1K5L6,NCBI_GP:CAL94121.1;Name=CAL94121.1;Note=Putative two-component sensor histidine kinase%2C%3B~Specificity unclear;gbkey=CDS;gene=moxY;product=putative two-component sensor histidine kinase;protein_id=CAL94121.1;transl_table=11
AM406670.1	EMBL	gene	1646272	1647963	.	-	.	ID=gene1539;Name=recJ;gbkey=Gene;gene=recJ;gene_biotype=protein_coding;locus_tag=azo1505
AM406670.1	EMBL	CDS	1646272	1647963	.	-	0	ID=cds1503;Parent=gene1539;Dbxref=EnsemblGenomes-Gn:azo1505,EnsemblGenomes-Tr:CAL94122,GOA:A1K5L7,InterPro:IPR001667,InterPro:IPR003156,InterPro:IPR004610,UniProtKB/TrEMBL:A1K5L7,NCBI_GP:CAL94122.1;Name=CAL94122.1;Note=Single-stranded-DNA-specific exonuclease recJ (EC 3.1.-.-). SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE. REQUIRED FOR MANY TYPES OF RECOMBINATIONAL EVENTS ALTHOUGH THE STRINGENCY OF THE REQUIREMENT FOR RECJ APPEARS TO VARY WITH THE TYPE OF RECOMBINATIONAL EVENT MONITORED AND THE OTHER RECOMBINATION GENE PRODUCTS WHICH ARE AVAILABLE. InterPro: Single-stranded-DNA-specific exonuclease RecJ. recJ: single-stranded-DNA-specific exo.%3B~High confidence in function and specificity;gbkey=CDS;gene=recJ;product=single-stranded-DNA-specific exonuclease;protein_id=CAL94122.1;transl_table=11
AM406670.1	EMBL	gene	1647960	1649036	.	-	.	ID=gene1540;Name=azo1506;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1506
AM406670.1	EMBL	CDS	1647960	1649036	.	-	0	ID=cds1504;Parent=gene1540;Dbxref=EnsemblGenomes-Gn:azo1506,EnsemblGenomes-Tr:CAL94123,InterPro:IPR016631,UniProtKB/TrEMBL:A1K5L8,NCBI_GP:CAL94123.1;Name=CAL94123.1;Note=Conserved hypothetical protein. Homology to CV2476 of C.violaceum of 38%25 (tremble:Q7NV68) No domains predicted. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94123.1;transl_table=11
AM406670.1	EMBL	gene	1649253	1651382	.	+	.	ID=gene1541;Name=azo1507;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1507
AM406670.1	EMBL	CDS	1649253	1651382	.	+	0	ID=cds1505;Parent=gene1541;Dbxref=EnsemblGenomes-Gn:azo1507,EnsemblGenomes-Tr:CAL94124,GOA:A1K5L9,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013704,InterPro:IPR020612,InterPro:IPR022946,InterPro:IPR023404,InterPro:IPR024560,UniProtKB/TrEMBL:A1K5L9,NCBI_GP:CAL94124.1;Name=CAL94124.1;Note=Conserved hypothetical protein. Homology to cv1738 of C. violaceum (sprot|YH38_CHRVO) InterPro: Uncharacterized protein family UPF0004 (IPR005839) no signal peptide no TMHs TIGR00089: conserved hypothetical prote;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94124.1;transl_table=11
AM406670.1	EMBL	gene	1651391	1651927	.	-	.	ID=gene1542;Name=azo1508;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1508
AM406670.1	EMBL	CDS	1651391	1651927	.	-	0	ID=cds1506;Parent=gene1542;Dbxref=EnsemblGenomes-Gn:azo1508,EnsemblGenomes-Tr:CAL94125,UniProtKB/TrEMBL:A1K5M0,NCBI_GP:CAL94125.1;Name=CAL94125.1;Note=Hypothetical membrane protein. No homology to the data bank. No domaine predicted. No signal peptide. 2 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94125.1;transl_table=11
AM406670.1	EMBL	gene	1652224	1653480	.	+	.	ID=gene1543;Name=lolE1;gbkey=Gene;gene=lolE1;gene_biotype=protein_coding;locus_tag=azo1509
AM406670.1	EMBL	CDS	1652224	1653480	.	+	0	ID=cds1507;Parent=gene1543;Dbxref=EnsemblGenomes-Gn:azo1509,EnsemblGenomes-Tr:CAL94126,GOA:A1K5M1,InterPro:IPR003838,InterPro:IPR011925,InterPro:IPR025857,UniProtKB/TrEMBL:A1K5M1,NCBI_GP:CAL94126.1;Name=CAL94126.1;Note=Putative lipoprotein transporter%2C permease protein. Homology to lolE of E. coli of 36%25 (sprot|LOLE_ECOLI). Part of an ATP-dependent transport system responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprotein) and of lolA (By similarity). Pfam: Predicted permease signal peptide 3 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=lolE1;product=putative lipoprotein transporter%2C permease protein;protein_id=CAL94126.1;transl_table=11
AM406670.1	EMBL	gene	1653473	1654180	.	+	.	ID=gene1544;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=azo1510
AM406670.1	EMBL	CDS	1653473	1654180	.	+	0	ID=cds1508;Parent=gene1544;Dbxref=EnsemblGenomes-Gn:azo1510,EnsemblGenomes-Tr:CAL94127,GOA:A1K5M2,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011924,InterPro:IPR015854,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K5M2,NCBI_GP:CAL94127.1;Name=CAL94127.1;Note=Lipoprotein releasing system ATP-binding protein lolD. Part of an ATP-dependent transport system responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprotein) and of lolA. Similar to TREMBL:Q82VL9%3B TREMBL:Q8Y0C6%3B SWISSPROT:P75957 (58%25 identity). Pfam (PF00005): ABC transporter. TC (3.A.1.125): The Lipoprotein Translocase (LPT) Family.%3B~High confidence in function and specificity;gbkey=CDS;gene=lolD;product=lipoprotein releasing system ATP-binding protein;protein_id=CAL94127.1;transl_table=11
AM406670.1	EMBL	gene	1654177	1654722	.	-	.	ID=gene1545;Name=azo1511;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1511
AM406670.1	EMBL	CDS	1654177	1654722	.	-	0	ID=cds1509;Parent=gene1545;Dbxref=EnsemblGenomes-Gn:azo1511,EnsemblGenomes-Tr:CAL94128,InterPro:IPR018639,UniProtKB/TrEMBL:A1K5M3,NCBI_GP:CAL94128.1;Name=CAL94128.1;Note=Conserved hypothetical membrane protein. Homology to ne0829 of N. europaea of 46%25 (trembl|Q82W66(SRS)) No domains predicted No signal peptide 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94128.1;transl_table=11
AM406670.1	EMBL	gene	1654821	1657130	.	+	.	ID=gene1546;Name=comA;gbkey=Gene;gene=comA;gene_biotype=protein_coding;locus_tag=azo1512
AM406670.1	EMBL	CDS	1654821	1657130	.	+	0	ID=cds1510;Parent=gene1546;Dbxref=EnsemblGenomes-Gn:azo1512,EnsemblGenomes-Tr:CAL94129,GOA:A1K5M4,InterPro:IPR001279,InterPro:IPR004477,InterPro:IPR004797,InterPro:IPR025405,UniProtKB/TrEMBL:A1K5M4,NCBI_GP:CAL94129.1;Name=CAL94129.1;Note=Competence protein comA. Essential for natural transformation. Could be a transporter involved in DNA uptake. InterPro: DNA internalization-related competence protein ComEC/Rec2 function: transporter activity TREMBL:Q82SD2: 38%25 identity%2C50%25 similarity. InterPro:IPR001279%3B Blactmase-like. IPR004477%3B ComEC_N-term. IPR004797%3B ComEC_Rec2. Pfam PF03772%3B Competence%3B 1. PF00753%3B Lactamase_B%3B 1. TIGRFAMs:TIGR00360%3B ComEC_N-term%3B 1. TIGR00361%3B ComEC_Rec2%3B ComEC_Rec2: DNA internalization-relate TMHMM predicted 8 transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;gene=comA;product=putative DNA uptake/competence protein;protein_id=CAL94129.1;transl_table=11
AM406670.1	EMBL	gene	1657199	1658110	.	+	.	ID=gene1547;Name=azo1513;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1513
AM406670.1	EMBL	CDS	1657199	1658110	.	+	0	ID=cds1511;Parent=gene1547;Dbxref=EnsemblGenomes-Gn:azo1513,EnsemblGenomes-Tr:CAL94130,GOA:A1K5M5,InterPro:IPR000073,InterPro:IPR029058,UniProtKB/TrEMBL:A1K5M5,NCBI_GP:CAL94130.1;Name=CAL94130.1;Note=TREMBL:Q8XZ32: 54%25 identity%2C 66%25 similarity Probable Hypothetical protein Rv2715/MT2788/Mb2734. InterPro:IPR000073%3B A/b_hydrolase. IPR003089%3B AB_hydrolase. IPR000379%3B Ser_estrs. Pfam PF00561%3B Abhydrolase_1%3B 1 InterPro: Alpha/beta hydrolase fold Mtu_fam_11: Mycobacterium tuberculosis pa%3B~Family membership;gbkey=CDS;product=probable hydrolase;protein_id=CAL94130.1;transl_table=11
AM406670.1	EMBL	gene	1658292	1659710	.	+	.	ID=gene1548;Name=azo1514;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1514
AM406670.1	EMBL	CDS	1658292	1659710	.	+	0	ID=cds1512;Parent=gene1548;Dbxref=EnsemblGenomes-Gn:azo1514,EnsemblGenomes-Tr:CAL94131,InterPro:IPR007302,InterPro:IPR016450,UniProtKB/TrEMBL:A1K5M6,NCBI_GP:CAL94131.1;Name=CAL94131.1;Note=Conserved hypothetical protein. Homology to RS04633 of R.solanacearum of 73%25 (tremble:Q8Y0C3). Has PF04169(IPR007297)%3BDomain of unknown function (DUF404)%3BThis is a protein of unknown function. It sometimes occurs in combination with two domains of unknown function DUF403 (IPR007296) and DUF407 (IPR007302). Has PF04174%3BDomain of unknown function (DUF407)%3BThis is a protein of unknown function. It sometimes occurs in combination with two domains of unknown function DUF403 (IPR007296) and DUF404 (IPR007297). No signal Peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94131.1;transl_table=11
AM406670.1	EMBL	gene	1659734	1660678	.	+	.	ID=gene1549;Name=azo1515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1515
AM406670.1	EMBL	CDS	1659734	1660678	.	+	0	ID=cds1513;Parent=gene1549;Dbxref=EnsemblGenomes-Gn:azo1515,EnsemblGenomes-Tr:CAL94132,InterPro:IPR007296,UniProtKB/TrEMBL:A1K5M7,NCBI_GP:CAL94132.1;Name=CAL94132.1;Note=Conserved Hypothetical protein%2C 57%25 identity to TrEMBL%3BQ8Y0C2 Has PF04168%3B(IPR00729)Bacterial domain of unknown function (DUF403):This is a protein of unknown function. It sometimes occurs in combination with two domains of unknown function DUF404 (IPR007297) and DUF407 (IPR007302). No Signal peptide or TMH reported Present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94132.1;transl_table=11
AM406670.1	EMBL	gene	1660725	1661654	.	-	.	ID=gene1550;Name=yjeQ;gbkey=Gene;gene=yjeQ;gene_biotype=protein_coding;locus_tag=azo1516
AM406670.1	EMBL	CDS	1660725	1661654	.	-	0	ID=cds1514;Parent=gene1550;Dbxref=EnsemblGenomes-Gn:azo1516,EnsemblGenomes-Tr:CAL94133,GOA:A1K5M8,InterPro:IPR004881,InterPro:IPR010914,InterPro:IPR012340,InterPro:IPR027417,UniProtKB/TrEMBL:A1K5M8,NCBI_GP:CAL94133.1;Name=CAL94133.1;Note=Probable GTPase engC precursor (EC 3.6.1.-). TREMBL:Q7VVH5: 52%25 identity%2C 64%25 similarity. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover (By similarity). InterPro IPR004881:DUF258. Pfam:PF03193%3B DUF258%3B acid_CoA_mut_C: methylmalonyl-CoA muta Non secretory protein (Signal P predicted) No transmembrane helices.%3B~Specificity unclear;gbkey=CDS;gene=yjeQ;product=probable GTPase;protein_id=CAL94133.1;transl_table=11
AM406670.1	EMBL	gene	1661656	1662909	.	-	.	ID=gene1551;Name=azo1517;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1517
AM406670.1	EMBL	CDS	1661656	1662909	.	-	0	ID=cds1515;Parent=gene1551;Dbxref=EnsemblGenomes-Gn:azo1517,EnsemblGenomes-Tr:CAL94134,GOA:A1K5M9,InterPro:IPR001915,InterPro:IPR027057,UniProtKB/TrEMBL:A1K5M9,NCBI_GP:CAL94134.1;Name=CAL94134.1;Note=Putative metalloprotease. Homology to ste24 of S. cerevisiae of 32%25 (sprot|ST24_YEAST). CAAX prenyl protease 1 (EC 3.4.24.84) (Prenyl protein-specific endoprotease 1) (PPSEP 1) (A-factor converting enzyme). Proteolytically removes the C-terminal three residues of farnesylated A-factor mating pheromone. Also acts to cleave the N-terminal extension of the pheromone. probable signal peptide probable 7 TMHs%3B~Family membership;gbkey=CDS;product=putative metalloprotease;protein_id=CAL94134.1;transl_table=11
AM406670.1	EMBL	gene	1663104	1663652	.	+	.	ID=gene1552;Name=orn;gbkey=Gene;gene=orn;gene_biotype=protein_coding;locus_tag=azo1518
AM406670.1	EMBL	CDS	1663104	1663652	.	+	0	ID=cds1516;Parent=gene1552;Dbxref=EnsemblGenomes-Gn:azo1518,EnsemblGenomes-Tr:CAL94135,GOA:A1K5N0,InterPro:IPR006055,InterPro:IPR012337,InterPro:IPR013520,InterPro:IPR022894,NCBI_GP:CAL94135.1;Name=CAL94135.1;Note=Oligoribonuclease (EC 3.1.-.-). 3-to-5 exoribonuclease specific for small oligoribonucleotides (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=orn;product=oligoribonuclease;protein_id=CAL94135.1;transl_table=11
AM406670.1	EMBL	gene	1663676	1665385	.	-	.	ID=gene1553;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=azo1519
AM406670.1	EMBL	CDS	1663676	1665385	.	-	0	ID=cds1517;Parent=gene1553;Dbxref=EnsemblGenomes-Gn:azo1519,EnsemblGenomes-Tr:CAL94136,GOA:A1K5N1,InterPro:IPR001672,InterPro:IPR018189,InterPro:IPR023096,UniProtKB/TrEMBL:A1K5N1,NCBI_GP:CAL94136.1;Name=CAL94136.1;Note=Glucose-6-phosphate isomerase 1(EC 5.3.1.9) (GPI 1)(Phosphoglucose isomerase 1)(PGI 1)(Phosphohexose isomerase 1) (PHI 1). Enzyme involved in glycolysis and in gluconeogenesis.Catalytic activity: d-glucose 6-phosphate %3D d-fructose 6- phosphate.Belongs to the gpi family. 39%25 G6P_Isomerase. Pfam:PF00342%3B PGI%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=pgi;product=putative glucose-6-phosphate isomerase;protein_id=CAL94136.1;transl_table=11
AM406670.1	EMBL	gene	1665304	1666938	.	-	.	ID=gene1554;Name=azo1520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1520
AM406670.1	EMBL	CDS	1665304	1666938	.	-	0	ID=cds1518;Parent=gene1554;Dbxref=EnsemblGenomes-Gn:azo1520,EnsemblGenomes-Tr:CAL94137,UniProtKB/TrEMBL:A1K5N2,NCBI_GP:CAL94137.1;Name=CAL94137.1;Note=Conserved hypothetical membrane protein. Homology to CV1748 of C. violaceum of 32%25 (trembl|Q7NX80(SRS)). No domains predicted. No signal peptide 11 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94137.1;transl_table=11
AM406670.1	EMBL	gene	1667147	1667365	.	-	.	ID=gene1555;Name=rpmE;gbkey=Gene;gene=rpmE;gene_biotype=protein_coding;locus_tag=azo1521
AM406670.1	EMBL	CDS	1667147	1667365	.	-	0	ID=cds1519;Parent=gene1555;Dbxref=EnsemblGenomes-Gn:azo1521,EnsemblGenomes-Tr:CAL94138,GOA:A1K5N3,InterPro:IPR002150,InterPro:IPR027491,NCBI_GP:CAL94138.1;Name=CAL94138.1;Note=50S ribosomal protein L31.%3B~Family membership;gbkey=CDS;gene=rpmE;product=50S ribosomal protein L31;protein_id=CAL94138.1;transl_table=11
AM406670.1	EMBL	gene	1667410	1668510	.	+	.	ID=gene1556;Name=azo1522;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1522
AM406670.1	EMBL	CDS	1667410	1668510	.	+	0	ID=cds1520;Parent=gene1556;Dbxref=EnsemblGenomes-Gn:azo1522,EnsemblGenomes-Tr:CAL94139,GOA:A1K5N4,InterPro:IPR001269,InterPro:IPR013785,InterPro:IPR018517,UniProtKB/TrEMBL:A1K5N4,NCBI_GP:CAL94139.1;Name=CAL94139.1;Note=putative TIM-barrel protein%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94139.1;transl_table=11
AM406670.1	EMBL	gene	1668539	1669234	.	+	.	ID=gene1557;Name=yggH;gbkey=Gene;gene=yggH;gene_biotype=protein_coding;locus_tag=azo1523
AM406670.1	EMBL	CDS	1668539	1669234	.	+	0	ID=cds1521;Parent=gene1557;Dbxref=EnsemblGenomes-Gn:azo1523,EnsemblGenomes-Tr:CAL94140,GOA:A1K5N5,InterPro:IPR003358,InterPro:IPR029063,UniProtKB/TrEMBL:A1K5N5,NCBI_GP:CAL94140.1;Name=CAL94140.1;Note=tRNA (guanine-N(7)-)-methyltransferase%2C 29%25 identity to SwissProt%3BQ8EBX8. SwissProt%3BQ8Y1I7(25%25 Identity)%2CQ8FE22(25%25 identity). Has PF02390%2CMethyltransf_4%2CPutative methyltransferase%3BIPR003358%3B This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.;gbkey=CDS;gene=yggH;product=tRNA (guanine-N7-)-methyltransferase;protein_id=CAL94140.1;transl_table=11
AM406670.1	EMBL	gene	1669231	1669941	.	+	.	ID=gene1558;Name=azo1524;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1524
AM406670.1	EMBL	CDS	1669231	1669941	.	+	0	ID=cds1522;Parent=gene1558;Dbxref=EnsemblGenomes-Gn:azo1524,EnsemblGenomes-Tr:CAL94141,InterPro:IPR004027,InterPro:IPR011978,UniProtKB/TrEMBL:A1K5N6,NCBI_GP:CAL94141.1;Name=CAL94141.1;Note=Conserved hypothetical protein. Homology to ct227 of C. tepidum of 32%25 (trembl|Q8KA93). Pfam: SEC-C motif This motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94141.1;transl_table=11
AM406670.1	EMBL	gene	1669934	1670281	.	+	.	ID=gene1559;Name=azo1525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1525
AM406670.1	EMBL	CDS	1669934	1670281	.	+	0	ID=cds1523;Parent=gene1559;Dbxref=EnsemblGenomes-Gn:azo1525,EnsemblGenomes-Tr:CAL94142,InterPro:IPR005358,UniProtKB/TrEMBL:A1K5N7,NCBI_GP:CAL94142.1;Name=CAL94142.1;Note=Conserved hypothetical protein. Homology to PA3209 of Pseudomonas aeruginosa of 43%25 (trembl:Q9HZ31). Has PF03692%2C Uncharacterised protein family (UPF0153)%3B IPR005358%3BThis family of proteins contain 8 conserved cysteines that may form a metal binding site. The function of these proteins is unknown but might be an Fe-S cluster as part of an oxidoreductase complex. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94142.1;transl_table=11
AM406670.1	EMBL	gene	1670316	1670681	.	+	.	ID=gene1560;Name=azo1526;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1526
AM406670.1	EMBL	CDS	1670316	1670681	.	+	0	ID=cds1524;Parent=gene1560;Dbxref=EnsemblGenomes-Gn:azo1526,EnsemblGenomes-Tr:CAL94143,InterPro:IPR005358,UniProtKB/TrEMBL:A1K5N8,NCBI_GP:CAL94143.1;Name=CAL94143.1;Note=TREMBL:Q8XH16: 56%25 identity%2C 66%25 similarity. SPROT:P71300: 53%25 identity%2C 67%25 similarity Hypothetical protein ykgJ%3B This family of proteins contain 8 conserved cysteines that may form a zinc binding site. The function of these proteins is unknown InterPro:IPR005358%3B UPF0153. Pfam: PF03692%3B UPF0153 No signal peptide. No transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;product=probable Ferredoxin;protein_id=CAL94143.1;transl_table=11
AM406670.1	EMBL	gene	1670701	1671576	.	-	.	ID=gene1561;Name=azo1527;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1527
AM406670.1	EMBL	CDS	1670701	1671576	.	-	0	ID=cds1525;Parent=gene1561;Dbxref=EnsemblGenomes-Gn:azo1527,EnsemblGenomes-Tr:CAL94144,GOA:A1K5N9,InterPro:IPR009163,InterPro:IPR011146,InterPro:IPR019200,UniProtKB/TrEMBL:A1K5N9,NCBI_GP:CAL94144.1;Name=CAL94144.1;Note=Function unclear;gbkey=CDS;product=putative ATP adenylyltransferase;protein_id=CAL94144.1;transl_table=11
AM406670.1	EMBL	gene	1671664	1671888	.	+	.	ID=gene1562;Name=azo1528;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1528
AM406670.1	EMBL	CDS	1671664	1671888	.	+	0	ID=cds1526;Parent=gene1562;Dbxref=EnsemblGenomes-Gn:azo1528,EnsemblGenomes-Tr:CAL94145,GOA:A1K5P0,InterPro:IPR002942,UniProtKB/TrEMBL:A1K5P0,NCBI_GP:CAL94145.1;Name=CAL94145.1;Note=Conserved hypothetical protein. Homology to XAC2816 of Xanthomonas axonopodis of 52%25 (trembl:Q8PIS9). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94145.1;transl_table=11
AM406670.1	EMBL	gene	1671902	1673644	.	-	.	ID=gene1563;Name=azo1529;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1529
AM406670.1	EMBL	CDS	1671902	1673644	.	-	0	ID=cds1527;Parent=gene1563;Dbxref=EnsemblGenomes-Gn:azo1529,EnsemblGenomes-Tr:CAL94146,GOA:A1K5P1,InterPro:IPR003148,InterPro:IPR006037,InterPro:IPR013099,InterPro:IPR016040,UniProtKB/TrEMBL:A1K5P1,NCBI_GP:CAL94146.1;Name=CAL94146.1;Note=42%25 K+channel_pore.IPR003148%3B TrkA_N. Pfam:PF02254%3B TrkA_N%3B 2. TMhelix:3%3B~Function unclear;gbkey=CDS;product=NAD-binding domain of the Kef-type K+ transport system fused to a uncharacterized conserved domain;protein_id=CAL94146.1;transl_table=11
AM406670.1	EMBL	gene	1673655	1674038	.	-	.	ID=gene1564;Name=azo1530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1530
AM406670.1	EMBL	CDS	1673655	1674038	.	-	0	ID=cds1528;Parent=gene1564;Dbxref=EnsemblGenomes-Gn:azo1530,EnsemblGenomes-Tr:CAL94147,UniProtKB/TrEMBL:A1K5P2,NCBI_GP:CAL94147.1;Name=CAL94147.1;Note=Conserved hypothetical membrane protein. Homology to AQ_302 of Aquifex aeolicus of 38%25 (trembl|O66649). No domains predicted. No signal peptide 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94147.1;transl_table=11
AM406670.1	EMBL	gene	1674393	1675244	.	+	.	ID=gene1565;Name=azo1531;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1531
AM406670.1	EMBL	CDS	1674393	1675244	.	+	0	ID=cds1529;Parent=gene1565;Dbxref=EnsemblGenomes-Gn:azo1531,EnsemblGenomes-Tr:CAL94148,InterPro:IPR006530,InterPro:IPR013424,UniProtKB/TrEMBL:A1K5P3,NCBI_GP:CAL94148.1;Name=CAL94148.1;Note=Hypothetical secreted protein. Weak homology with hits in the database. Signal Peptide present. No TMHs. No domains predicted;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94148.1;transl_table=11
AM406670.1	EMBL	gene	1675220	1675543	.	-	.	ID=gene1566;Name=azo1532;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1532
AM406670.1	EMBL	CDS	1675220	1675543	.	-	0	ID=cds1530;Parent=gene1566;Dbxref=EnsemblGenomes-Gn:azo1532,EnsemblGenomes-Tr:CAL94149,UniProtKB/TrEMBL:A1K5P4,NCBI_GP:CAL94149.1;Name=CAL94149.1;Note=Hypothetical protein%2C 65%25 Identity (77%25 similarity) to SwissProt%3B Q7NS67.56%25 identity to SwissProt%3BQ8Y2R5. No domains%2C repeats%2C motifs or features present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94149.1;transl_table=11
AM406670.1	EMBL	gene	1675840	1678551	.	-	.	ID=gene1567;Name=acnA;gbkey=Gene;gene=acnA;gene_biotype=protein_coding;locus_tag=azo1533
AM406670.1	EMBL	CDS	1675840	1678551	.	-	0	ID=cds1531;Parent=gene1567;Dbxref=EnsemblGenomes-Gn:azo1533,EnsemblGenomes-Tr:CAL94150,GOA:A1K5P5,InterPro:IPR000573,InterPro:IPR001030,InterPro:IPR006249,InterPro:IPR015928,InterPro:IPR015931,InterPro:IPR015932,InterPro:IPR015934,InterPro:IPR015937,InterPro:IPR018136,UniProtKB/TrEMBL:A1K5P5,NCBI_GP:CAL94150.1;Name=CAL94150.1;Note=Probable Aconitate hydratase. Homology to acnA of B. japonicum of 52%25 (sprot|ACON_BRAJA) CATALYTIC ACTIVITY: Citrate %3D cis-aconitate + H(2)O. InterPro: Aconitate hydratase N-terminal (IPR001030)%3B Aconitate hydroatse%2C C-terminal (IPR000573) Tigrfam: h_aconitase: homoaconitase Pfam: Aconitase family%3B Aconitase C-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=acnA;product=probable aconitate hydratase;protein_id=CAL94150.1;transl_table=11
AM406670.1	EMBL	gene	1678824	1681421	.	+	.	ID=gene1568;Name=acnB;gbkey=Gene;gene=acnB;gene_biotype=protein_coding;locus_tag=azo1534
AM406670.1	EMBL	CDS	1678824	1681421	.	+	0	ID=cds1532;Parent=gene1568;Dbxref=EnsemblGenomes-Gn:azo1534,EnsemblGenomes-Tr:CAL94151,GOA:A1K5P6,InterPro:IPR001030,InterPro:IPR004406,InterPro:IPR015928,InterPro:IPR015929,InterPro:IPR015931,InterPro:IPR015932,InterPro:IPR015933,InterPro:IPR015937,InterPro:IPR018136,UniProtKB/TrEMBL:A1K5P6,NCBI_GP:CAL94151.1;Name=CAL94151.1;Note=Aconitate hydratase. Homology to acnB of E. coli of 73%25 (sprot|ACO2_ECOLI) CATALYTIC ACTIVITY: Citrate %3D cis-aconitate + H(2)O. Tirfam: acnB: aconitate hydratase 2 Pfam: aconitase family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=acnB;product=aconitate hydratase;protein_id=CAL94151.1;transl_table=11
AM406670.1	EMBL	gene	1681615	1684014	.	+	.	ID=gene1569;Name=azo1535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1535
AM406670.1	EMBL	CDS	1681615	1684014	.	+	0	ID=cds1533;Parent=gene1569;Dbxref=EnsemblGenomes-Gn:azo1535,EnsemblGenomes-Tr:CAL94152,InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR003018,InterPro:IPR029016,InterPro:IPR029787,UniProtKB/TrEMBL:A1K5P7,NCBI_GP:CAL94152.1;Name=CAL94152.1;Note=Conserved hypothetical signaling protein. Homology to ebA3785 of Azoarcus sp. EbN1 of 40%25 (gnl|keqq|eba:ebA3785(KEGG)). Pfam: PF00990 GGDEF domain. PF01590 GAF domain. PF00563 EAL domain. TIGRFAM:TIGR00254 putative diguanylate cyclase (GGDEF) domain. No signal peptide. No TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical signaling protein;protein_id=CAL94152.1;transl_table=11
AM406670.1	EMBL	gene	1684130	1684609	.	+	.	ID=gene1570;Name=azo1536;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1536
AM406670.1	EMBL	CDS	1684130	1684609	.	+	0	ID=cds1534;Parent=gene1570;Dbxref=EnsemblGenomes-Gn:azo1536,EnsemblGenomes-Tr:CAL94153,GOA:A1K5P8,InterPro:IPR009056,UniProtKB/TrEMBL:A1K5P8,NCBI_GP:CAL94153.1;Name=CAL94153.1;Note=Conserved hypothetical secreted protein. Homology to bd2668 of B. bacteriovorus of 53%25 (tremblnew|CAE80459). no domains signal peptide no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94153.1;transl_table=11
AM406670.1	EMBL	gene	1684668	1685216	.	+	.	ID=gene1571;Name=azo1537;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1537
AM406670.1	EMBL	CDS	1684668	1685216	.	+	0	ID=cds1535;Parent=gene1571;Dbxref=EnsemblGenomes-Gn:azo1537,EnsemblGenomes-Tr:CAL94154,GOA:A1K5P9,InterPro:IPR012349,UniProtKB/TrEMBL:A1K5P9,NCBI_GP:CAL94154.1;Name=CAL94154.1;Note=Conserved hypothetical protein. Homology to Raeut03004638 of Ralstonia eutropha of 37%25 (gi|45515835|ref|ZP_00167389.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94154.1;transl_table=11
AM406670.1	EMBL	gene	1685213	1686571	.	+	.	ID=gene1572;Name=ptsp;gbkey=Gene;gene=ptsp;gene_biotype=protein_coding;locus_tag=azo1538
AM406670.1	EMBL	CDS	1685213	1686571	.	+	0	ID=cds1536;Parent=gene1572;Dbxref=EnsemblGenomes-Gn:azo1538,EnsemblGenomes-Tr:CAL94155,GOA:A1K5Q0,InterPro:IPR003018,InterPro:IPR011576,InterPro:IPR012349,InterPro:IPR029016,UniProtKB/TrEMBL:A1K5Q0,NCBI_GP:CAL94155.1;Name=CAL94155.1;Note=Putative phosphoenolpyruvate-protein phosphotransferase%2C%3B~Function unclear;gbkey=CDS;gene=ptsp;product=putative phosphoenolpyruvate-protein phosphotransferase;protein_id=CAL94155.1;transl_table=11
AM406670.1	EMBL	gene	1686698	1687660	.	+	.	ID=gene1573;Name=acoA1;gbkey=Gene;gene=acoA1;gene_biotype=protein_coding;locus_tag=azo1539
AM406670.1	EMBL	CDS	1686698	1687660	.	+	0	ID=cds1537;Parent=gene1573;Dbxref=EnsemblGenomes-Gn:azo1539,EnsemblGenomes-Tr:CAL94156,GOA:A1K5Q1,InterPro:IPR001017,InterPro:IPR029061,UniProtKB/TrEMBL:A1K5Q1,NCBI_GP:CAL94156.1;Name=CAL94156.1;Note=Putative acetoin dehydrogenase%2C alpha subunit. Homology to acoA of C. magnum of 36%25 (trembl|Q46142) CATALYZES THE 26-DICHLOROPHENOLINDOPHENOL-DEPENDENT CLEAVAGE OF ACETOIN INTO ACETATE AND ACETALDEHYDE IN VITRO. THE ALPHA SUBUNIT IS PROBABLY THE CATALYTIC SUBUNIT OF THE ENZYME. Pfam: Dehydrogenase E1 component no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=acoA1;product=putative acetion dehydrogenase%2C alpha subunit;protein_id=CAL94156.1;transl_table=11
AM406670.1	EMBL	gene	1687671	1688627	.	+	.	ID=gene1574;Name=acoB1;gbkey=Gene;gene=acoB1;gene_biotype=protein_coding;locus_tag=azo1540
AM406670.1	EMBL	CDS	1687671	1688627	.	+	0	ID=cds1538;Parent=gene1574;Dbxref=EnsemblGenomes-Gn:azo1540,EnsemblGenomes-Tr:CAL94157,GOA:A1K5Q2,InterPro:IPR005475,InterPro:IPR005476,InterPro:IPR009014,InterPro:IPR029061,UniProtKB/TrEMBL:A1K5Q2,NCBI_GP:CAL94157.1;Name=CAL94157.1;Note=Probable acetoin dehydrogenase%2C beta subunit. Homology to acoB of A. eutrophus of 41%25 (sprot|ACOB_ALCEU) Catalyzes the 2%2C6-dichlorophenolindophenol-dependent cleavage of acetoin into acetate and acetaldehyde%2C in vitro. The beta subunit is probably not the catalytic subunit of the enzyme. Pfam: Transketolase%2C pyridine binding%3B Transketolase%2C C-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=acoB1;product=probable acetoin dehydrogenase%2C beta subunit;protein_id=CAL94157.1;transl_table=11
AM406670.1	EMBL	gene	1688741	1689355	.	+	.	ID=gene1575;Name=gst;gbkey=Gene;gene=gst;gene_biotype=protein_coding;locus_tag=azo1541
AM406670.1	EMBL	CDS	1688741	1689355	.	+	0	ID=cds1539;Parent=gene1575;Dbxref=EnsemblGenomes-Gn:azo1541,EnsemblGenomes-Tr:CAL94158,GOA:A1K5Q3,InterPro:IPR004045,InterPro:IPR004046,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:A1K5Q3,NCBI_GP:CAL94158.1;Name=CAL94158.1;Note=Putative glutathione transferase. Homology to gst of E. coli of 36%25 (sprot|GT_ECOLI). Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles. InterPro: Glutathione S-transferase C terminus (IPR004046)%3B Glutathione S-transferase N terminus (IPR004045) Pfam: Glutathione S-transferase%2C N-terminal%3B Glutathione S-transferase%2C C-terminal no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=gst;product=putative glutathione transferase;protein_id=CAL94158.1;transl_table=11
AM406670.1	EMBL	gene	1689373	1690617	.	-	.	ID=gene1576;Name=azo1542;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1542
AM406670.1	EMBL	CDS	1689373	1690617	.	-	0	ID=cds1540;Parent=gene1576;Dbxref=EnsemblGenomes-Gn:azo1542,EnsemblGenomes-Tr:CAL94159,GOA:A1K5Q4,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K5Q4,NCBI_GP:CAL94159.1;Name=CAL94159.1;Note=Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Homolog to E. coli ynfM%2C an hypothetical transport protein%2Cprobably involved in antibiotic resistance. InterPro: General substrate transporters 2A0108: nitrate transporter%3B~High confidence in function and specificity;gbkey=CDS;product=putative membrane transport protein;protein_id=CAL94159.1;transl_table=11
AM406670.1	EMBL	gene	1690740	1691627	.	+	.	ID=gene1577;Name=azo1543;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1543
AM406670.1	EMBL	CDS	1690740	1691627	.	+	0	ID=cds1541;Parent=gene1577;Dbxref=EnsemblGenomes-Gn:azo1543,EnsemblGenomes-Tr:CAL94160,GOA:A1K5Q5,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K5Q5,NCBI_GP:CAL94160.1;Name=CAL94160.1;Note=Transcriptional regulator%2C LysR family%2C%3B~Specificity unclear;gbkey=CDS;product=transcriptional regulator%2C LysR family;protein_id=CAL94160.1;transl_table=11
AM406670.1	EMBL	gene	1691763	1694249	.	+	.	ID=gene1578;Name=azo1544;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1544
AM406670.1	EMBL	CDS	1691763	1694249	.	+	0	ID=cds1542;Parent=gene1578;Dbxref=EnsemblGenomes-Gn:azo1544,EnsemblGenomes-Tr:CAL94161,GOA:A1K5Q6,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR013656,InterPro:IPR029787,UniProtKB/TrEMBL:A1K5Q6,NCBI_GP:CAL94161.1;Name=CAL94161.1;Note=GGDEF/EAL/PAC/PAS-domain containing protein%2C sym%3B pNGR234a) / TREMBL: trembl|Q88A61 (38%25 Pseudomonas syringae (pv. tomato)%2C sensory box/ggdef domain/eal domain protein pspto0536) InterPro: IPR000160 GGDEF. IPR000014 PAS. IPR000700 PAS-assoc_C. Pfam: PF00990 GGDEF domain. PF00989 PAS domain. PF00785 PAC motif. PF00563 EAL domain. TIGRFAM:TIGR00229 PAS domain S-box. TIGR00254 putative diguanylate cyclase (GGDEF) domain.%3B~Conserved hypothetical protein;gbkey=CDS;product=GGDEF/EAL/PAC/PAS-domain containing protein;protein_id=CAL94161.1;transl_table=11
AM406670.1	EMBL	gene	1694263	1695135	.	+	.	ID=gene1579;Name=azo1545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1545
AM406670.1	EMBL	CDS	1694263	1695135	.	+	0	ID=cds1543;Parent=gene1579;Dbxref=EnsemblGenomes-Gn:azo1545,EnsemblGenomes-Tr:CAL94162,UniProtKB/TrEMBL:A1K5Q7,NCBI_GP:CAL94162.1;Name=CAL94162.1;Note=Hypotheical protein. No good homology of the entire protein with the data base. No domains predicted. No THs. No signal peptide.;gbkey=CDS;product=hypothetical protein;protein_id=CAL94162.1;transl_table=11
AM406670.1	EMBL	gene	1695143	1696138	.	-	.	ID=gene1580;Name=citE;gbkey=Gene;gene=citE;gene_biotype=protein_coding;locus_tag=azo1546
AM406670.1	EMBL	CDS	1695143	1696138	.	-	0	ID=cds1544;Parent=gene1580;Dbxref=EnsemblGenomes-Gn:azo1546,EnsemblGenomes-Tr:CAL94163,GOA:A1K5Q8,InterPro:IPR005000,InterPro:IPR011206,InterPro:IPR015813,UniProtKB/TrEMBL:A1K5Q8,NCBI_GP:CAL94163.1;Name=CAL94163.1;Note=Probable Citrate lyase beta chain(EC 4.1.3.6)(Citrase)(Citryl-CoA lyase subunit)(EC 4.1.3.34). In citrate-utilising prokaryotes%2C citrate lyase cleaves intracellular citrate into acetate and oxaloacetate%2C and is organised as a functional complex consisting of alpha%2Cbeta%2C and gamma subunits.The alpha subunit substitutes citryl for the acetyl group to form citryl-S-ACP. The beta subunit completes the reaction by cleaving the citryl to yield oxaloacetate and (regenerated) acetyl-S-ACP. Similar to the CitE protein from L.mesenteroides where is part of a gene cluster citCDEFG. SWISSPROT:CILB_LEUMC.O53078. InterPro:IPR006475%3B CitE.IPR001465%3B Malate_synthase. TIGRFAMs:TIGR01588%3B citE%3B 1.%3B~Function unclear;gbkey=CDS;gene=citE;product=putative citrate lyase beta chain;protein_id=CAL94163.1;transl_table=11
AM406670.1	EMBL	gene	1696246	1697238	.	-	.	ID=gene1581;Name=mdh;gbkey=Gene;gene=mdh;gene_biotype=protein_coding;locus_tag=azo1547
AM406670.1	EMBL	CDS	1696246	1697238	.	-	0	ID=cds1545;Parent=gene1581;Dbxref=EnsemblGenomes-Gn:azo1547,EnsemblGenomes-Tr:CAL94164,GOA:A1K5Q9,InterPro:IPR001236,InterPro:IPR001557,InterPro:IPR010945,InterPro:IPR015955,InterPro:IPR016040,InterPro:IPR022383,NCBI_GP:CAL94164.1;Name=CAL94164.1;Note=Malate dehydrogenase cytoplasmic (EC 1.1.1.37). Homolgy to mdh of A. arcticum of 76%25 (sprot|MDH_AQUAR) Malate dehydrogenase catalyzes the interconversion of malate to oxaloacetate utilizing the NAD/NADH cofactor system. The enzyme participates in the citric acid cycle and exists in all aerobics organisms. InterPro: Lactate/malate dehydrogenase (IPR001236)%3B Malate dehydrogenase (IPR001252) Pfam: lactate/malate dehydrogenase%2C alpha/beta C-terminus%3B lactate/malate dehydrogenase%2C NAD binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=mdh;product=malate dehydrogenase;protein_id=CAL94164.1;transl_table=11
AM406670.1	EMBL	gene	1697454	1698182	.	+	.	ID=gene1582;Name=frlR;gbkey=Gene;gene=frlR;gene_biotype=protein_coding;locus_tag=azo1548
AM406670.1	EMBL	CDS	1697454	1698182	.	+	0	ID=cds1546;Parent=gene1582;Dbxref=EnsemblGenomes-Gn:azo1548,EnsemblGenomes-Tr:CAL94165,GOA:A1K5R0,InterPro:IPR000524,InterPro:IPR011663,InterPro:IPR011991,InterPro:IPR028978,UniProtKB/TrEMBL:A1K5R0,NCBI_GP:CAL94165.1;Name=CAL94165.1;Note=Putative GntR-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;gene=frlR;product=putative GntR-family transcriptional regulator;protein_id=CAL94165.1;transl_table=11
AM406670.1	EMBL	gene	1698280	1698669	.	+	.	ID=gene1583;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;locus_tag=azo1549
AM406670.1	EMBL	CDS	1698280	1698669	.	+	0	ID=cds1547;Parent=gene1583;Dbxref=EnsemblGenomes-Gn:azo1549,EnsemblGenomes-Tr:CAL94166,GOA:A1K5R1,InterPro:IPR000701,InterPro:IPR014314,InterPro:IPR014361,UniProtKB/TrEMBL:A1K5R1,NCBI_GP:CAL94166.1;Name=CAL94166.1;Note=Succinate dehydrogenase cytochrome b-556 subunit%2CsdhC.58%25 Identity to TrEMBL%3BQ7NZ57.52%25 to TrEMBL%3BQ9JRJ0%2C36%25 to SwissProt%3BP10446. Has PF01127%2CSuccinate dehydrogenase cytochrome b subunit%3BIPR000701 Sdh_cyt%3B Succinate dehydrogenase (SDH) is a membrane-bound complex of two main components: a membrane-extrinsic component composed of an FAD-binding flavoprotein and an iron-sulphur protein%2C and a hydrophobic component composed of a cytochrome b and a membrane anchor protein.The cytochrome b component is a mono heme transmembrane protein belonging to a family that includes cytochrome b-556 from bacterial SDH (gene sdhC)%3B cytochrome b560 from the mammalian mitochondrial SDH complex and that encoded in the mitochondrial genome of some algae and in the plant Marchantia polymorpha%3B cytochrome b from yeast mitochondrial SDH complex (gene SDH3 or CYB3)%3B and protein cyt-1 from Caenorhabditis. These cytochromes are proteins of about 130 residues that comprise three transmembrane regions. There are two conserved histidines which may be involved in binding the heme group.;gbkey=CDS;gene=sdhC;product=succinate dehydrogenase;protein_id=CAL94166.1;transl_table=11
AM406670.1	EMBL	gene	1698666	1699010	.	+	.	ID=gene1584;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;locus_tag=azo1550
AM406670.1	EMBL	CDS	1698666	1699010	.	+	0	ID=cds1548;Parent=gene1584;Dbxref=EnsemblGenomes-Gn:azo1550,EnsemblGenomes-Tr:CAL94167,GOA:A1K5R2,InterPro:IPR000701,InterPro:IPR014312,UniProtKB/TrEMBL:A1K5R2,NCBI_GP:CAL94167.1;Name=CAL94167.1;Note=Succinate dehydrogenase%2C hydrophobic membrane anchor subunit. Homology to sdhD of C. burnetii of 41%25 (sprot|DHSD_COXBU). THIS IS THE HYDROPHOBIC COMPONENT OF THE SUCCINATE DEHYDROGENASE COMPLEX. IT IS SUGGESTED THAT IT IS REQUIRED TO ANCHOR THE CATALYTIC COMPONENTS TO THE CYTOPLASMIC MEMBRANE. no signal peptide 3 TMHS%3B~Family membership;gbkey=CDS;gene=sdhD;product=probable succinate dehydrogenase%2C hydrophobic membrane anchor subunit;protein_id=CAL94167.1;transl_table=11
AM406670.1	EMBL	gene	1699013	1700806	.	+	.	ID=gene1585;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=azo1551
AM406670.1	EMBL	CDS	1699013	1700806	.	+	0	ID=cds1549;Parent=gene1585;Dbxref=EnsemblGenomes-Gn:azo1551,EnsemblGenomes-Tr:CAL94168,GOA:A1K5R3,InterPro:IPR003952,InterPro:IPR003953,InterPro:IPR011281,InterPro:IPR013027,InterPro:IPR014006,InterPro:IPR015939,InterPro:IPR027477,UniProtKB/TrEMBL:A1K5R3,NCBI_GP:CAL94168.1;Name=CAL94168.1;Note=Probable succinate dehydrogenase%2C flavoprotein subunit. Homology to sdhA of C. burnetii of 54%25 (sprot|DHSA_COXBU) Part of an enzyme complex containing four subunits: a flavoprotein%2C an iron-sulfur protein%2Ccytochrome b-556 and a hydrophobic protein. CATALYTIC ACTIVITY: Succinate + acceptor %3D fumarate + reduced acceptor. InterPro: Fumarate reductase/succinate dehydrogenase flavoprotein N-terminal (IPR003953)%3B Fumarate reductase/succinate dehydrogenase FAD-binding site (IPR003952)%3B Fumarate reductase/succinate dehydrogenase%2C C-terminal (IPR004112) Pfam: FAD-binding domain%3B Fumarate reductase/succinate dehydrogenase no TMHs no signal peptide gidA: glucose-inhibited division prot%3B~High confidence in function and specificity;gbkey=CDS;gene=sdhA;product=probable succinate dehydrogenase%2C flavoprotein subunit;protein_id=CAL94168.1;transl_table=11
AM406670.1	EMBL	gene	1700826	1701536	.	+	.	ID=gene1586;Name=sdhB;gbkey=Gene;gene=sdhB;gene_biotype=protein_coding;locus_tag=azo1552
AM406670.1	EMBL	CDS	1700826	1701536	.	+	0	ID=cds1550;Parent=gene1586;Dbxref=EnsemblGenomes-Gn:azo1552,EnsemblGenomes-Tr:CAL94169,GOA:A1K5R4,InterPro:IPR001041,InterPro:IPR004489,InterPro:IPR009051,InterPro:IPR012675,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR025192,UniProtKB/TrEMBL:A1K5R4,NCBI_GP:CAL94169.1;Name=CAL94169.1;Note=Succinate dehydrogenase%2C iron-sulfur subunit. Homology to sdhB of C. burnetii of 59%25 (sprot|DHSB_COXBU). InterPro: Succinate dehydrogenase/fumarate reductase iron-sulfur protein (IPR004489)%3B 4fe-4S ferredoxin%2C iron-sulfur binding domain (IPR001450)%3B Ferredoxin (IPR1041) Pfam: 2Fe-2S iron-sulfur cluster binding domain Tigrfam: dhsB: succinate dehydrogenase and fumarat reductase iron-sulfur protein no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=sdhB;product=probable succinate dehydrogenase%2C iron-sulfur subunit;protein_id=CAL94169.1;transl_table=11
AM406670.1	EMBL	gene	1701539	1701775	.	+	.	ID=gene1587;Name=azo1553;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1553
AM406670.1	EMBL	CDS	1701539	1701775	.	+	0	ID=cds1551;Parent=gene1587;Dbxref=EnsemblGenomes-Gn:azo1553,EnsemblGenomes-Tr:CAL94170,InterPro:IPR005631,UniProtKB/TrEMBL:A1K5R5,NCBI_GP:CAL94170.1;Name=CAL94170.1;Note=Conserved hypothetical protein%2C 39%25 identity to Swissprot%3BQ46825%2C ygfY of Escherichia coli. Has PF03937:(IPR005631%2C DUF339)TPR repeat region%3BThis family represents a set of three divergent TPR repeats found in a small group of uncharacterised proteins. No Signal Peptide or TMH present.%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94170.1;transl_table=11
AM406670.1	EMBL	gene	1701845	1703140	.	+	.	ID=gene1588;Name=gltA;gbkey=Gene;gene=gltA;gene_biotype=protein_coding;locus_tag=azo1554
AM406670.1	EMBL	CDS	1701845	1703140	.	+	0	ID=cds1552;Parent=gene1588;Dbxref=EnsemblGenomes-Gn:azo1554,EnsemblGenomes-Tr:CAL94171,GOA:A1K5R6,InterPro:IPR002020,InterPro:IPR010953,InterPro:IPR016141,InterPro:IPR016142,InterPro:IPR016143,InterPro:IPR019810,InterPro:IPR024176,UniProtKB/TrEMBL:A1K5R6,NCBI_GP:CAL94171.1;Name=CAL94171.1;Note=Probable citrate synthase. Homology to gltA of s. meliloti of 69%25 (sprot|CISY_RHIME). Citrate synthase is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle: Citrate + CoA %3D acetyl-CoA + H2 O + oxaloacetate InterPro: Citrate synthase (IPR002020) Pfam: Citrate synthase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=gltA;product=probable citrate synthase;protein_id=CAL94171.1;transl_table=11
AM406670.1	EMBL	gene	1703300	1706131	.	+	.	ID=gene1589;Name=odhA;gbkey=Gene;gene=odhA;gene_biotype=protein_coding;locus_tag=azo1555
AM406670.1	EMBL	CDS	1703300	1706131	.	+	0	ID=cds1553;Parent=gene1589;Dbxref=EnsemblGenomes-Gn:azo1555,EnsemblGenomes-Tr:CAL94172,GOA:A1K5R7,InterPro:IPR001017,InterPro:IPR005475,InterPro:IPR011603,InterPro:IPR029061,UniProtKB/TrEMBL:A1K5R7,NCBI_GP:CAL94172.1;Name=CAL94172.1;Note=Probable 2-oxoglutarate dehydrogenase. Homology to odhA of A. eutrophus of 63%25 (sprot|ODO1_ALCEU). THE 2-OXOGLUTARATE DEHYDROGENASE COMPLEX CATALYZES THE OVERALL CONVERSION OF 2-OXOGLUTARATE TO SUCCINYL-COA %26 CO(2). IT CONTAINS MULTIPLE COPIES OF 3 ENZYMATIC COMPONENTS: 2-OXOGLUTARATE DEHYDROGENASE (E1) DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE (E2) AND LIPOAMIDE DEHYDROGENASE (E3). InterPro: Dehydrogenase E1 component (IPR001017)%3B Transletolase (IPR005474) Tigrfam: 2oxo_dh_E1: 2-oxoglutarate dehydrogenase%2C E1 component Pfam: Dehydrogenase E1 component%2C Transketolas%2C pyridine binding domain no signale peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=odhA;product=probable 2-oxoglutarate dehydrogenase;protein_id=CAL94172.1;transl_table=11
AM406670.1	EMBL	gene	1706183	1707385	.	+	.	ID=gene1590;Name=odhB;gbkey=Gene;gene=odhB;gene_biotype=protein_coding;locus_tag=azo1556
AM406670.1	EMBL	CDS	1706183	1707385	.	+	0	ID=cds1554;Parent=gene1590;Dbxref=EnsemblGenomes-Gn:azo1556,EnsemblGenomes-Tr:CAL94173,GOA:A1K5R8,InterPro:IPR000089,InterPro:IPR001078,InterPro:IPR004167,InterPro:IPR006255,InterPro:IPR011053,InterPro:IPR023213,UniProtKB/TrEMBL:A1K5R8,NCBI_GP:CAL94173.1;Name=CAL94173.1;Note=Dihydrolipoamide S-succinyltransferase. Homology to odhB of A. eutrophus of 71%25 (sprot|ODO2_ALCEU). THE 2-OXOGLUTARATE DEHYDROGENASE COMPLEX CATALYZES THE OVERALL CONVERSION OF 2-OXOGLUTARATE TO SUCCINYL-COA %26 CO(2). IT CONTAINS MULTIPLE COPIES OF 3 ENZYMATIC COMPONENTS: 2-OXOGLUTARATE DEHYDROGENASE (E1) DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE (E2) AND LIPOAMIDE DEHYDROGENASE (E3) (BY SIMILARITY). Pfam: Biotin-requiring enzyme%3B e3 binding domain%3B 2-oxo acid dehydrogenase acyltransferase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=odhB;product=dihydrolipoamide S-succinyltransferase;protein_id=CAL94173.1;transl_table=11
AM406670.1	EMBL	gene	1707467	1708891	.	+	.	ID=gene1591;Name=odhL;gbkey=Gene;gene=odhL;gene_biotype=protein_coding;locus_tag=azo1557
AM406670.1	EMBL	CDS	1707467	1708891	.	+	0	ID=cds1555;Parent=gene1591;Dbxref=EnsemblGenomes-Gn:azo1557,EnsemblGenomes-Tr:CAL94174,GOA:A1K5R9,InterPro:IPR001327,InterPro:IPR004099,InterPro:IPR006258,InterPro:IPR012999,InterPro:IPR013027,InterPro:IPR016156,InterPro:IPR023753,UniProtKB/TrEMBL:A1K5R9,NCBI_GP:CAL94174.1;Name=CAL94174.1;Note=Probable dihydrolipoamide dehydrogenase. Homology to odhL of A. eutrophus of 68%25 (sprot|DLDH_ALCEU). THE BRANCHED-CHAIN ALPHA-KETO DEHYDROGENASE COMPLEX CATALYZES THE OVERALL CONVERSION OF ALPHA-KETO ACIDS TO ACYL-COA AND CO(2). IT CONTAINS MULTIPLE COPIES OF 3 ENZYMATIC COMPONENTS: BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE (E1) LIPOAMIDE ACYLTRANSFERASE (E2) AND LIPOAMIDE DEHYDROGENASE (E3). InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327)%3B Pyridine nucleotide-disulphide oxidoreductase%2C classI (IPR001100)%3B Pyridine nucleotide-disulphide oxidoreductase dimerisation domain (IPR001099) Pfam: Pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase dimersiation domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=odhL;product=probable dihydrolipoyl dehydrogenase;protein_id=CAL94174.1;transl_table=11
AM406670.1	EMBL	gene	1708972	1711326	.	-	.	ID=gene1592;Name=azo1558;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1558
AM406670.1	EMBL	CDS	1708972	1711326	.	-	0	ID=cds1556;Parent=gene1592;Dbxref=EnsemblGenomes-Gn:azo1558,EnsemblGenomes-Tr:CAL94175,GOA:A1K5S0,InterPro:IPR024501,InterPro:IPR029058,UniProtKB/TrEMBL:A1K5S0,NCBI_GP:CAL94175.1;Name=CAL94175.1;Note=conserved hypothetical protein but a part of protein have similarity to potassium-transporting ATPase%2CA subunit. TIGR Cellular role(s):Transport and binding proteins: Cations Entry name :- SWISSPROT:YACK_RHIME Prim. accession # Q9X447 Identity:-46%25 interPro :-IPR004623%3B K_ATPaseA. Pfam PF03814%3B KdpA%3B 1. Number of predicted TMHs: 0 Signal peptide probability: 0.082;gbkey=CDS;product=conserved hypothetical;protein_id=CAL94175.1;transl_table=11
AM406670.1	EMBL	gene	1711473	1712678	.	+	.	ID=gene1593;Name=afg;gbkey=Gene;gene=afg;gene_biotype=protein_coding;locus_tag=azo1559
AM406670.1	EMBL	CDS	1711473	1712678	.	+	0	ID=cds1557;Parent=gene1593;Dbxref=EnsemblGenomes-Gn:azo1559,EnsemblGenomes-Tr:CAL94176,GOA:A1K5S1,InterPro:IPR005654,InterPro:IPR027417,UniProtKB/TrEMBL:A1K5S1,NCBI_GP:CAL94176.1;Name=CAL94176.1;Note=Hypothetical protein yhcM. TREMBL:Q8XZX3: 54%25 identity%2C 69%25 similarity This family of proteins contains a P-loop motif and are predicted to be ATPases InterPro:IPR005654%3B AFG1_ATPase. Pfam PF03969%3B AFG1_ATPase No signal peptide No transmembrane helices L9: ribosomal protein L9%3B~Specificity unclear;gbkey=CDS;gene=afg;product=probable ATPase;protein_id=CAL94176.1;transl_table=11
AM406670.1	EMBL	gene	1712686	1714659	.	+	.	ID=gene1594;Name=yoaA;gbkey=Gene;gene=yoaA;gene_biotype=protein_coding;locus_tag=azo1560
AM406670.1	EMBL	CDS	1712686	1714659	.	+	0	ID=cds1558;Parent=gene1594;Dbxref=EnsemblGenomes-Gn:azo1560,EnsemblGenomes-Tr:CAL94177,GOA:A1K5S2,InterPro:IPR006555,InterPro:IPR006935,InterPro:IPR014001,InterPro:IPR014013,InterPro:IPR027417,UniProtKB/TrEMBL:A1K5S2,NCBI_GP:CAL94177.1;Name=CAL94177.1;Note=Probable ATP-dependent helicase%2C%3B~Family membership;gbkey=CDS;gene=yoaA;product=probable ATP-dependent helicase;protein_id=CAL94177.1;transl_table=11
AM406670.1	EMBL	gene	1714770	1715264	.	+	.	ID=gene1595;Name=mobB1;gbkey=Gene;gene=mobB1;gene_biotype=protein_coding;locus_tag=azo1561
AM406670.1	EMBL	CDS	1714770	1715264	.	+	0	ID=cds1559;Parent=gene1595;Dbxref=EnsemblGenomes-Gn:azo1561,EnsemblGenomes-Tr:CAL94178,GOA:A1K5S3,InterPro:IPR004435,InterPro:IPR027417,InterPro:IPR029007,UniProtKB/TrEMBL:A1K5S3,NCBI_GP:CAL94178.1;Name=CAL94178.1;Note=Molybdopterin-guanine dinucleotide biosynthesis protein B. may bind the guanine nucleotide required for the synthesis of molybdopterin guanine dinucleotide. mobB: molybdopterin-guanine dinucleotide%3B~High confidence in function and specificity;gbkey=CDS;gene=mobB1;product=molybdopterin-guanine dinucleotide biosynthesis protein B;protein_id=CAL94178.1;transl_table=11
AM406670.1	EMBL	gene	1715261	1716466	.	+	.	ID=gene1596;Name=moeA1;gbkey=Gene;gene=moeA1;gene_biotype=protein_coding;locus_tag=azo1562
AM406670.1	EMBL	CDS	1715261	1716466	.	+	0	ID=cds1560;Parent=gene1596;Dbxref=EnsemblGenomes-Gn:azo1562,EnsemblGenomes-Tr:CAL94179,GOA:A1K5S4,InterPro:IPR001453,InterPro:IPR005110,InterPro:IPR005111,InterPro:IPR020817,UniProtKB/TrEMBL:A1K5S4,NCBI_GP:CAL94179.1;Name=CAL94179.1;Note=Molybdopterin biosynthesis protein moeA. Involved in the biosynthesis of a demolybdo-cofactor (molybdopterin) necessary for molybdo-enzymes. Seems to be involved in a step of activation of molybdenum in the form of thiomolybdenum. InterPro: Molybdenum cofactor biosynthesis protein molyb_syn: molybdenum cofactor synthesis%3B~High confidence in function and specificity;gbkey=CDS;gene=moeA1;product=molybdopterin cofactor biosynthesis protein;protein_id=CAL94179.1;transl_table=11
AM406670.1	EMBL	gene	1716479	1716733	.	+	.	ID=gene1597;Name=moaD;gbkey=Gene;gene=moaD;gene_biotype=protein_coding;locus_tag=azo1563
AM406670.1	EMBL	CDS	1716479	1716733	.	+	0	ID=cds1561;Parent=gene1597;Dbxref=EnsemblGenomes-Gn:azo1563,EnsemblGenomes-Tr:CAL94180,GOA:A1K5S5,InterPro:IPR003749,InterPro:IPR010034,InterPro:IPR012675,InterPro:IPR016155,UniProtKB/TrEMBL:A1K5S5,NCBI_GP:CAL94180.1;Name=CAL94180.1;Note=Molybdopterin converting factor subunit 1 (MPT synthase subunit 1) (Molybdopterin synthase subunit 1) (Molybdenum cofactor biosynthesis protein D) . Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group. The sulfur atoms are provided by the active form of the small subunit whose activation involves the acquisition of sulfur and the activity of moeB/chlN.%3B~High confidence in function and specificity;gbkey=CDS;gene=moaD;product=molybdopterin converting factor%2C subunit;protein_id=CAL94180.1;transl_table=11
AM406670.1	EMBL	gene	1716738	1717208	.	+	.	ID=gene1598;Name=moaE;gbkey=Gene;gene=moaE;gene_biotype=protein_coding;locus_tag=azo1564
AM406670.1	EMBL	CDS	1716738	1717208	.	+	0	ID=cds1562;Parent=gene1598;Dbxref=EnsemblGenomes-Gn:azo1564,EnsemblGenomes-Tr:CAL94181,GOA:A1K5S6,InterPro:IPR003448,UniProtKB/TrEMBL:A1K5S6,NCBI_GP:CAL94181.1;Name=CAL94181.1;Note=Molybdopterin converting factor subunit 2 (MPT synthase subunit 2) (Molybdopterin synthase subunit 2) . Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group.%3B~High confidence in function and specificity;gbkey=CDS;gene=moaE;product=molybdenum cofactor biosynthesis protein E;protein_id=CAL94181.1;transl_table=11
AM406670.1	EMBL	gene	1717276	1717779	.	-	.	ID=gene1599;Name=phaP;gbkey=Gene;gene=phaP;gene_biotype=protein_coding;locus_tag=azo1565
AM406670.1	EMBL	CDS	1717276	1717779	.	-	0	ID=cds1563;Parent=gene1599;Dbxref=EnsemblGenomes-Gn:azo1565,EnsemblGenomes-Tr:CAL94182,InterPro:IPR010127,InterPro:IPR018968,UniProtKB/TrEMBL:A1K5S7,NCBI_GP:CAL94182.1;Name=CAL94182.1;Note=Putative phasin protein PhaP.A family of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions%2C the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins. However%2C the member from Magnetospirillum sp. AMB-1 is called a magnetic particle membrane-specific GTPase. TrEMBL: Q93QF2 InterPro:IPR010127%2CTIGR01841 NO TMH Present No Signal Peptide Present%3B~Family membership;gbkey=CDS;gene=phaP;product=putative phasin protein;protein_id=CAL94182.1;transl_table=11
AM406670.1	EMBL	gene	1718010	1720592	.	+	.	ID=gene1600;Name=clpB1;gbkey=Gene;gene=clpB1;gene_biotype=protein_coding;locus_tag=azo1566
AM406670.1	EMBL	CDS	1718010	1720592	.	+	0	ID=cds1564;Parent=gene1600;Dbxref=EnsemblGenomes-Gn:azo1566,EnsemblGenomes-Tr:CAL94183,GOA:A1K5S8,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004176,InterPro:IPR017730,InterPro:IPR018368,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,InterPro:IPR028299,UniProtKB/TrEMBL:A1K5S8,NCBI_GP:CAL94183.1;Name=CAL94183.1;Note=Probable ATP-dependent Clp protease%2C ATP-binding subunit ClpB. Homology to clpB of E. coli of 66%25 (sprot|CLPB_ECOLI). The protein is thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates. Pfam: ATPase family assocciated with various cellular activities%3B CPL amino terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=clpB1;product=probable ATP-dependent Clp protease%2C ATP-binding subunit ClpB;protein_id=CAL94183.1;transl_table=11
AM406670.1	EMBL	gene	1720639	1723911	.	-	.	ID=gene1601;Name=azo1567;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1567
AM406670.1	EMBL	CDS	1720639	1723911	.	-	0	ID=cds1565;Parent=gene1601;Dbxref=EnsemblGenomes-Gn:azo1567,EnsemblGenomes-Tr:CAL94184,GOA:A1K5S9,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR006189,InterPro:IPR007895,InterPro:IPR029787,UniProtKB/TrEMBL:A1K5S9,NCBI_GP:CAL94184.1;Name=CAL94184.1;Note=GGDEF/EAL-domain containing protein;gbkey=CDS;product=GGDEF/EAL-domain containing protein;protein_id=CAL94184.1;transl_table=11
AM406670.1	EMBL	gene	1724061	1725956	.	+	.	ID=gene1602;Name=ppiD;gbkey=Gene;gene=ppiD;gene_biotype=protein_coding;locus_tag=azo1568
AM406670.1	EMBL	CDS	1724061	1725956	.	+	0	ID=cds1566;Parent=gene1602;Dbxref=EnsemblGenomes-Gn:azo1568,EnsemblGenomes-Tr:CAL94185,GOA:A1K5T0,InterPro:IPR000297,InterPro:IPR023058,InterPro:IPR027304,UniProtKB/TrEMBL:A1K5T0,NCBI_GP:CAL94185.1;Name=CAL94185.1;Note=Putative peptidyl-prolyl cis-trans isomerase. Homology to ppiD of E. coli of 23%25 (sprot|PPID_ECOLI). PPIASES ACCELERATE THE FOLDING OF PROTEINS. SEEMS TO BE INVOLVED IN THE FOLDING OF OUTER MEMBRANE PROTEINS. InterPro: PpiC-type peptidyl-prolyl cis-trans isomerase (IPR000297) Pfam: PPIC-type PPIASE domain probable 1 TMH no signal peptide%3B~Family membership;gbkey=CDS;gene=ppiD;product=putative peptidyl-prolyl cis-trans isomerase;protein_id=CAL94185.1;transl_table=11
AM406670.1	EMBL	gene	1726037	1726828	.	-	.	ID=gene1603;Name=fabI1;gbkey=Gene;gene=fabI1;gene_biotype=protein_coding;locus_tag=azo1569
AM406670.1	EMBL	CDS	1726037	1726828	.	-	0	ID=cds1567;Parent=gene1603;Dbxref=EnsemblGenomes-Gn:azo1569,EnsemblGenomes-Tr:CAL94186,GOA:A1K5T1,InterPro:IPR002347,InterPro:IPR014358,InterPro:IPR016040,UniProtKB/TrEMBL:A1K5T1,NCBI_GP:CAL94186.1;Name=CAL94186.1;Note=CATALYTIC ACTIVITY: Acyl-[acyl-carrier protein] + NAD+ %3D trans-2%2C3-dehydroacyl-[acyl-carrier protein] + NADH Entry name:- SWISSPROT:FABI_PSEAE Prim. accession # Q9ZFE4 Identities %3D 173/260 (66%25) InterPro :- IPR002198%3B ADH_short. Pfam:- PF00106%3B adh_short%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.044 Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=fabI1;product=probable enoyl-acyl carrier protein reductase;protein_id=CAL94186.1;transl_table=11
AM406670.1	EMBL	gene	1726995	1727903	.	+	.	ID=gene1604;Name=azo1570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1570
AM406670.1	EMBL	CDS	1726995	1727903	.	+	0	ID=cds1568;Parent=gene1604;Dbxref=EnsemblGenomes-Gn:azo1570,EnsemblGenomes-Tr:CAL94187,InterPro:IPR021134,UniProtKB/TrEMBL:A1K5T2,NCBI_GP:CAL94187.1;Name=CAL94187.1;Note=Conserved hypothetical membrane protein. Homology to RSC3414 of Ralstonia solanacearum of 48%25 (sprot|YY14_RALSO(SRS))%2C Has PF05249:(IPR007913)%3BUncharacterised protein family (UPF0187)%3BThis family of proteins is functionally uncharacterised. signal peptide 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94187.1;transl_table=11
AM406670.1	EMBL	gene	1727944	1730145	.	+	.	ID=gene1605;Name=azo1571;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1571
AM406670.1	EMBL	CDS	1727944	1730145	.	+	0	ID=cds1569;Parent=gene1605;Dbxref=EnsemblGenomes-Gn:azo1571,EnsemblGenomes-Tr:CAL94188,GOA:A1K5T3,InterPro:IPR000914,UniProtKB/TrEMBL:A1K5T3,NCBI_GP:CAL94188.1;Name=CAL94188.1;Note=Conserved hypothetical protein. Homology to hbpA of N. europaea of 56%25. Protein consist of two domains: 1. bacterial extracellular sloute protein with homology to heme-binding protein A which is important for the heme aquisition and 2. a transmembrane helix a the C-terminus (unusual combination). Interpro: Bacterial extracellular solute-binding protein%2C family 5 (IPR000914) Pfam: Bacterial extracellular solute binding protein Signal peptide one TMH;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94188.1;transl_table=11
AM406670.1	EMBL	gene	1730147	1731124	.	+	.	ID=gene1606;Name=appB;gbkey=Gene;gene=appB;gene_biotype=protein_coding;locus_tag=azo1572
AM406670.1	EMBL	CDS	1730147	1731124	.	+	0	ID=cds1570;Parent=gene1606;Dbxref=EnsemblGenomes-Gn:azo1572,EnsemblGenomes-Tr:CAL94189,GOA:A1K5T4,InterPro:IPR000515,UniProtKB/TrEMBL:A1K5T4,NCBI_GP:CAL94189.1;Name=CAL94189.1;Note=Dipeptide transport system permease protein dppB. Part of the binding-protein-dependent transport system for dipeptides%3B probably responsible for the translocation of the substrate across the membrane. InterPro: Binding-protein-dependent transport systems inner membrane component crcB: crcB protein%3B~High confidence in function and specificity;gbkey=CDS;gene=appB;product=putative Oligopeptide ABC transporter%2C permease protein;protein_id=CAL94189.1;transl_table=11
AM406670.1	EMBL	gene	1731121	1732533	.	+	.	ID=gene1607;Name=appC;gbkey=Gene;gene=appC;gene_biotype=protein_coding;locus_tag=azo1573
AM406670.1	EMBL	CDS	1731121	1732533	.	+	0	ID=cds1571;Parent=gene1607;Dbxref=EnsemblGenomes-Gn:azo1573,EnsemblGenomes-Tr:CAL94190,GOA:A1K5T5,InterPro:IPR000515,UniProtKB/TrEMBL:A1K5T5,NCBI_GP:CAL94190.1;Name=CAL94190.1;Note=Oligopeptide transport system permease protein appC. This protein is a component of an oligopeptide permease a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence though unlike OPP is incapable of transporting tripeptides. Probably responsible for the translocation of the substrate across the membrane (By similarity). pts-Glc: PTS system maltose and gluco%3B~High confidence in function and specificity;gbkey=CDS;gene=appC;product=Oligopeptide ABC transporter%2C permease protein probable.;protein_id=CAL94190.1;transl_table=11
AM406670.1	EMBL	gene	1732640	1734199	.	+	.	ID=gene1608;Name=azo1574;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1574
AM406670.1	EMBL	CDS	1732640	1734199	.	+	0	ID=cds1572;Parent=gene1608;Dbxref=EnsemblGenomes-Gn:azo1574,EnsemblGenomes-Tr:CAL94191,InterPro:IPR003846,NCBI_GP:CAL94191.1;Name=CAL94191.1;Note=Conserved hypothetical protein. Homology to XCC2284 of X.campestris of 67%25 (tremble:Q8P8F8) Has PF02696%3BUncharacterized ACR%2C YdiU/UPF0061 family(Protein of Unknown Function)%2C IPR003846. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94191.1;transl_table=11
AM406670.1	EMBL	gene	1734206	1734787	.	-	.	ID=gene1609;Name=nnrU;gbkey=Gene;gene=nnrU;gene_biotype=protein_coding;locus_tag=azo1575
AM406670.1	EMBL	CDS	1734206	1734787	.	-	0	ID=cds1573;Parent=gene1609;Dbxref=EnsemblGenomes-Gn:azo1575,EnsemblGenomes-Tr:CAL94192,InterPro:IPR009915,UniProtKB/TrEMBL:A1K5T7,NCBI_GP:CAL94192.1;Name=CAL94192.1;Note=Probable NnrU protein%2C 31%25 identity to TrEMBL%3BQ92Z13%2C Q9AAA0 Has PF07298(IPR009915):NnrU protein%3BThis family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor;gbkey=CDS;gene=nnrU;product=probable NnrU protein;protein_id=CAL94192.1;transl_table=11
AM406670.1	EMBL	gene	1734888	1735334	.	-	.	ID=gene1610;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=azo1576
AM406670.1	EMBL	CDS	1734888	1735334	.	-	0	ID=cds1574;Parent=gene1610;Dbxref=EnsemblGenomes-Gn:azo1576,EnsemblGenomes-Tr:CAL94193,GOA:A1K5T8,InterPro:IPR000037,InterPro:IPR020081,InterPro:IPR023620,NCBI_GP:CAL94193.1;Name=CAL94193.1;Note=Probable SsrA-binding protein. Homology to smpB of E. coli of 54%25 (sprot|SSRP_ECOLI) Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes (By similarity). Tigrfam: smpB: SsrA-binding protein Pfam: SmpB protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=smpB;product=probable SsrA-binding protein;protein_id=CAL94193.1;transl_table=11
AM406670.1	EMBL	gene	1735447	1735884	.	+	.	ID=gene1611;Name=azo1577;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1577
AM406670.1	EMBL	CDS	1735447	1735884	.	+	0	ID=cds1575;Parent=gene1611;Dbxref=EnsemblGenomes-Gn:azo1577,EnsemblGenomes-Tr:CAL94194,InterPro:IPR005031,InterPro:IPR023393,UniProtKB/TrEMBL:A1K5T9,NCBI_GP:CAL94194.1;Name=CAL94194.1;Note=Entry name TREMBL:Q8XZH0 Prim. accession # Q8XZH0 InterPro :- IPR005340%3B UPF0083. Pfam PF03654%3B ARPF%3B 1. Identities %3D 78/142 (54%25)%2C Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.000;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94194.1;transl_table=11
AM406670.1	EMBL	gene	1735881	1736204	.	+	.	ID=gene1612;Name=azo1578;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1578
AM406670.1	EMBL	CDS	1735881	1736204	.	+	0	ID=cds1576;Parent=gene1612;Dbxref=EnsemblGenomes-Gn:azo1578,EnsemblGenomes-Tr:CAL94195,InterPro:IPR005346,InterPro:IPR016155,UniProtKB/TrEMBL:A1K5U0,NCBI_GP:CAL94195.1;Name=CAL94195.1;Note=Conserved hypothetical protein. Homology to CV3462 of C.violaceum of 54%25 (tremble:Q7NSG4) Has PF03658%3BUncharacterised protein family (UPF0125). IPR005346 Has no signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94195.1;transl_table=11
AM406670.1	EMBL	gene	1736223	1736780	.	-	.	ID=gene1613;Name=azo1579;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1579
AM406670.1	EMBL	CDS	1736223	1736780	.	-	0	ID=cds1577;Parent=gene1613;Dbxref=EnsemblGenomes-Gn:azo1579,EnsemblGenomes-Tr:CAL94196,InterPro:IPR025392,UniProtKB/TrEMBL:A1K5U1,NCBI_GP:CAL94196.1;Name=CAL94196.1;Note=Conserved hypothetical secreted protein. Homology to RS05265 of R. solanacearum of 30%25 (trembl|Q8XZG8(SRS)) No domains predicted Signal peptide present No TMH reported.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94196.1;transl_table=11
AM406670.1	EMBL	gene	1736897	1738357	.	+	.	ID=gene1614;Name=guaB;gbkey=Gene;gene=guaB;gene_biotype=protein_coding;locus_tag=azo1580
AM406670.1	EMBL	CDS	1736897	1738357	.	+	0	ID=cds1578;Parent=gene1614;Dbxref=EnsemblGenomes-Gn:azo1580,EnsemblGenomes-Tr:CAL94197,GOA:A1K5U2,InterPro:IPR000644,InterPro:IPR001093,InterPro:IPR005990,InterPro:IPR013785,InterPro:IPR015875,UniProtKB/TrEMBL:A1K5U2,NCBI_GP:CAL94197.1;Name=CAL94197.1;Note=IMP dehydrogenase (Inosine-5'-monophosphate dehydrogenase) (Inosinic acid dehydrogenase) (Inosinate dehydrogenase) (IMP oxidoreductase) (Inosine monophosphate oxidoreductase) kpsF: KpsF/GutQ family protein%3B~High confidence in function and specificity;gbkey=CDS;gene=guaB;product=IMP dehydrogenase;protein_id=CAL94197.1;transl_table=11
AM406670.1	EMBL	gene	1738436	1740001	.	+	.	ID=gene1615;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=azo1581
AM406670.1	EMBL	CDS	1738436	1740001	.	+	0	ID=cds1579;Parent=gene1615;Dbxref=EnsemblGenomes-Gn:azo1581,EnsemblGenomes-Tr:CAL94198,GOA:A1K5U3,InterPro:IPR001674,InterPro:IPR004739,InterPro:IPR014729,InterPro:IPR017926,InterPro:IPR022310,InterPro:IPR022955,InterPro:IPR025777,InterPro:IPR029062,NCBI_GP:CAL94198.1;Name=CAL94198.1;Note=GMP synthase (glutamine-hydrolyzing) (Glutamine amidotransferase) (GMP synthetase) guaA_Cterm: GMP synthase C-terminal%3B~High confidence in function and specificity;gbkey=CDS;gene=guaA;product=GMP synthase (glutamine-hydrolyzing);protein_id=CAL94198.1;transl_table=11
AM406670.1	EMBL	gene	1740086	1740970	.	-	.	ID=gene1616;Name=azo1582;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1582
AM406670.1	EMBL	CDS	1740086	1740970	.	-	0	ID=cds1580;Parent=gene1616;Dbxref=EnsemblGenomes-Gn:azo1582,EnsemblGenomes-Tr:CAL94199,GOA:A1K5U4,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K5U4,NCBI_GP:CAL94199.1;Name=CAL94199.1;Note=HTH-type transcriptional activator%2C%3B~Specificity unclear;gbkey=CDS;product=HTH-type transcriptional activator;protein_id=CAL94199.1;transl_table=11
AM406670.1	EMBL	gene	1741067	1741870	.	+	.	ID=gene1617;Name=nqo1;gbkey=Gene;gene=nqo1;gene_biotype=protein_coding;locus_tag=azo1583
AM406670.1	EMBL	CDS	1741067	1741870	.	+	0	ID=cds1581;Parent=gene1617;Dbxref=EnsemblGenomes-Gn:azo1583,EnsemblGenomes-Tr:CAL94200,GOA:A1K5U5,InterPro:IPR003680,InterPro:IPR029039,UniProtKB/TrEMBL:A1K5U5,NCBI_GP:CAL94200.1;Name=CAL94200.1;Note=NAD(P)H dehydrogenase [quinone] 1 (EC 1.6.5.2) (Quinone reductase 1) (QR1) (DT-diaphorase) (DTD) (Azoreductase) (Phylloquinone reductase) (Menadione reductase). The enzyme apparently serves as a quinone reductase in connection with conjugation reactions of hydroquinons involved in detoxification pathways as well as in biosynthetic processes such as the vitamin K-dependent gamma-carboxylation of glutamate residues in prothrombin synthesis (By similarity). trembl:Q9I4B4:72%25identity%3B 81%25 similarity InterPro: NAD(P)H dehydrogenase (quinone) InterPro:IPR003680%3B NADHdh_2. Pfam:PF02525%3B Flavodoxin_2 crcB: crcB protein No signal peptide present Absence of transmembrane helices (TMHMM predicted)%3B~High confidence in function and specificity;gbkey=CDS;gene=nqo1;product=probable NAD(P)H dehydrogenase%2C quinone 1;protein_id=CAL94200.1;transl_table=11
AM406670.1	EMBL	gene	1741890	1743509	.	-	.	ID=gene1618;Name=azo1584;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1584
AM406670.1	EMBL	CDS	1741890	1743509	.	-	0	ID=cds1582;Parent=gene1618;Dbxref=EnsemblGenomes-Gn:azo1584,EnsemblGenomes-Tr:CAL94201,GOA:A1K5U6,InterPro:IPR001789,InterPro:IPR003018,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR029016,UniProtKB/TrEMBL:A1K5U6,NCBI_GP:CAL94201.1;Name=CAL94201.1;Note=Putative two-component hybrid sensor and regulator %2C%3B~Function unclear;gbkey=CDS;product=putative two-component hybrid sensor and regulator;protein_id=CAL94201.1;transl_table=11
AM406670.1	EMBL	gene	1743693	1744202	.	-	.	ID=gene1619;Name=azo1585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1585
AM406670.1	EMBL	CDS	1743693	1744202	.	-	0	ID=cds1583;Parent=gene1619;Dbxref=EnsemblGenomes-Gn:azo1585,EnsemblGenomes-Tr:CAL94202,InterPro:IPR013424,UniProtKB/TrEMBL:A1K5U7,NCBI_GP:CAL94202.1;Name=CAL94202.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. signal peptide. 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94202.1;transl_table=11
AM406670.1	EMBL	gene	1744406	1744909	.	-	.	ID=gene1620;Name=azo1586;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1586
AM406670.1	EMBL	CDS	1744406	1744909	.	-	0	ID=cds1584;Parent=gene1620;Dbxref=EnsemblGenomes-Gn:azo1586,EnsemblGenomes-Tr:CAL94203,InterPro:IPR021557,UniProtKB/TrEMBL:A1K5U8,NCBI_GP:CAL94203.1;Name=CAL94203.1;Note=Conserved hypothetical secreted protein. Homology to Avin02003713 of Azotobacter vinelandii of 35%25 (gi|53610668|ref|ZP_00089587.2|(NBCI ENTREZ)). No domains predicted. Signal P reporting signal peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94203.1;transl_table=11
AM406670.1	EMBL	gene	1744963	1746744	.	-	.	ID=gene1621;Name=azo1587;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1587
AM406670.1	EMBL	CDS	1744963	1746744	.	-	0	ID=cds1585;Parent=gene1621;Dbxref=EnsemblGenomes-Gn:azo1587,EnsemblGenomes-Tr:CAL94204,GOA:A1K5U9,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR013655,InterPro:IPR013656,UniProtKB/TrEMBL:A1K5U9,NCBI_GP:CAL94204.1;Name=CAL94204.1;Note=Putative two-component system sensor protein%2C%3B~Function unclear;gbkey=CDS;product=putative two-component system sensor protein;protein_id=CAL94204.1;transl_table=11
AM406670.1	EMBL	gene	1746847	1747311	.	+	.	ID=gene1622;Name=cumB;gbkey=Gene;gene=cumB;gene_biotype=protein_coding;locus_tag=azo1588
AM406670.1	EMBL	CDS	1746847	1747311	.	+	0	ID=cds1586;Parent=gene1622;Dbxref=EnsemblGenomes-Gn:azo1588,EnsemblGenomes-Tr:CAL94205,GOA:A1K5V0,InterPro:IPR002125,InterPro:IPR016192,InterPro:IPR016193,InterPro:IPR028883,UniProtKB/TrEMBL:A1K5V0,NCBI_GP:CAL94205.1;Name=CAL94205.1;Note=Cytidine deaminase (EC: 3.5.4.5) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (EC: 3.5.4.12) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [1%2C 2]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.%3B~High confidence in function and specificity;gbkey=CDS;gene=cumB;product=cytidine deaminase;protein_id=CAL94205.1;transl_table=11
AM406670.1	EMBL	gene	1747313	1747792	.	+	.	ID=gene1623;Name=azo1589;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1589
AM406670.1	EMBL	CDS	1747313	1747792	.	+	0	ID=cds1587;Parent=gene1623;Dbxref=EnsemblGenomes-Gn:azo1589,EnsemblGenomes-Tr:CAL94206,GOA:A1K5V1,InterPro:IPR005490,UniProtKB/TrEMBL:A1K5V1,NCBI_GP:CAL94206.1;Name=CAL94206.1;Note=Conserved hypothetical protein. Homology to CBU1080 of C.burnetii of 59%25 (tremble:Q83CN1) Has PF03734%3BErfK/YbiS/YcfS/YnhG%3B(IPR005490)This family of proteins are found in a range of bacteria. Th conserved region contains a conserved histidine and cysteine%2Csuggesting that these proteins have an enzymatic activity. Several members of this family contain peptidoglycan binding domains. So these proteins may use peptidoglycan or a precursor as a substrate. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94206.1;transl_table=11
AM406670.1	EMBL	gene	1747789	1748220	.	+	.	ID=gene1624;Name=azo1590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1590
AM406670.1	EMBL	CDS	1747789	1748220	.	+	0	ID=cds1588;Parent=gene1624;Dbxref=EnsemblGenomes-Gn:azo1590,EnsemblGenomes-Tr:CAL94207,GOA:A1K5V2,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:A1K5V2,NCBI_GP:CAL94207.1;Name=CAL94207.1;Note=Conserved hypothetical acetyltransferase. Homology to glr3404 of G. violaceus of 52%25 (trembl|Q7NFX1). InterPro: GCN5-related N-acetyltransferase (IPR000182) Pfam: Acetyltransferase (GNAT) family no signal peptide no TMHS%3B~Family membership;gbkey=CDS;product=conserved hypothetical acetyltransferase;protein_id=CAL94207.1;transl_table=11
AM406670.1	EMBL	gene	1748232	1748999	.	-	.	ID=gene1625;Name=azo1591;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1591
AM406670.1	EMBL	CDS	1748232	1748999	.	-	0	ID=cds1589;Parent=gene1625;Dbxref=EnsemblGenomes-Gn:azo1591,EnsemblGenomes-Tr:CAL94208,InterPro:IPR008551,UniProtKB/TrEMBL:A1K5V3,NCBI_GP:CAL94208.1;Name=CAL94208.1;Note=Conserved hypothetical protein. Homology to GSU0792 of G.sulfurreducens of 50%25 (gsu:GSU0792(KEGG)) Has PF05742(IPR008551)%3BProtein of unknown function (DUF833)%3BThis family is found in eukaryotes%2C prokaryotes and viruses and has no known function. P54797 has been found to be expressed during early embryogenesis in mice. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94208.1;transl_table=11
AM406670.1	EMBL	gene	1748990	1749307	.	-	.	ID=gene1626;Name=azo1592;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1592
AM406670.1	EMBL	CDS	1748990	1749307	.	-	0	ID=cds1590;Parent=gene1626;Dbxref=EnsemblGenomes-Gn:azo1592,EnsemblGenomes-Tr:CAL94209,UniProtKB/TrEMBL:A1K5V4,NCBI_GP:CAL94209.1;Name=CAL94209.1;Note=Conserved hypothetical protein. Homology to ebD92 of Azoarcus sp. EbN1 of 46%25 (gnl|keqq|eba:ebD92(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94209.1;transl_table=11
AM406670.1	EMBL	gene	1749321	1750349	.	-	.	ID=gene1627;Name=azo1593;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1593
AM406670.1	EMBL	CDS	1749321	1750349	.	-	0	ID=cds1591;Parent=gene1627;Dbxref=EnsemblGenomes-Gn:azo1593,EnsemblGenomes-Tr:CAL94210,GOA:A1K5V5,InterPro:IPR006222,InterPro:IPR013977,InterPro:IPR017703,InterPro:IPR029043,UniProtKB/TrEMBL:A1K5V5,NCBI_GP:CAL94210.1;Name=CAL94210.1;Note=Conserved hypothetical protein aminomethyltransferase . Homology to ne1514 of N. europaea of 37%25 (trembl|Q82UH2) InterPro: Glycine cleavage T-protein (aminomethyl transferase) Tigrfam: gcvT: glycine cleavage system T protein Pfam: Glycine cleavage T-protein This is a family of glycine cleavage T-proteins%2C part of the glycine cleavage multienzyme complex (GCV) which catalyses the catabolism of glycine. The T-protein is an aminomethyl transferase that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein %3D (6R)-5%2C10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical aminomethyltransferase;protein_id=CAL94210.1;transl_table=11
AM406670.1	EMBL	gene	1750580	1751584	.	+	.	ID=gene1628;Name=azo1594;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1594
AM406670.1	EMBL	CDS	1750580	1751584	.	+	0	ID=cds1592;Parent=gene1628;Dbxref=EnsemblGenomes-Gn:azo1594,EnsemblGenomes-Tr:CAL94211,GOA:A1K5V6,InterPro:IPR003770,InterPro:IPR013087,UniProtKB/TrEMBL:A1K5V6,NCBI_GP:CAL94211.1;Name=CAL94211.1;Note=Hypothetical protein HI0457. This entry describes proteins of unknown function TREMBL:Q8XYH5: 50%25 identity%2C66%25 similarity InterPro:IPR003770%3B DUF175. Pfam:PF02618%3B ADC_lyas Non secretory protein with signal peptide probability 0.977 (Signal P predicted) No. of transmembrane helices: 1 (TMHMM predicted) This entry describes proteins of unknown function 2A0108: nitrate transporter%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94211.1;transl_table=11
AM406670.1	EMBL	gene	1751590	1752210	.	+	.	ID=gene1629;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=azo1595
AM406670.1	EMBL	CDS	1751590	1752210	.	+	0	ID=cds1593;Parent=gene1629;Dbxref=EnsemblGenomes-Gn:azo1595,EnsemblGenomes-Tr:CAL94212,GOA:A1K5V7,InterPro:IPR018094,InterPro:IPR027417,UniProtKB/TrEMBL:A1K5V7,NCBI_GP:CAL94212.1;Name=CAL94212.1;Note=dTMP kinase (Thymidylate kinase) InterPro: Thymidylate kinase DTMP_kinase: thymidylate kinase%3B~High confidence in function and specificity;gbkey=CDS;gene=tmk;product=dTMP kinase;protein_id=CAL94212.1;transl_table=11
AM406670.1	EMBL	gene	1752207	1753256	.	+	.	ID=gene1630;Name=holB;gbkey=Gene;gene=holB;gene_biotype=protein_coding;locus_tag=azo1596
AM406670.1	EMBL	CDS	1752207	1753256	.	+	0	ID=cds1594;Parent=gene1630;Dbxref=EnsemblGenomes-Gn:azo1596,EnsemblGenomes-Tr:CAL94213,GOA:A1K5V8,InterPro:IPR004622,InterPro:IPR027417,UniProtKB/TrEMBL:A1K5V8,NCBI_GP:CAL94213.1;Name=CAL94213.1;Note=DNA polymerase III delta subunit. DNA polymerase III is a complex multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3 to 5 exonuclease activity (By similarity). TIGRFAM: holB: DNA polymerase III delta prime.%3B~High confidence in function and specificity;gbkey=CDS;gene=holB;product=DNA-directed DNA polymerase;protein_id=CAL94213.1;transl_table=11
AM406670.1	EMBL	gene	1753253	1753624	.	+	.	ID=gene1631;Name=pilZ;gbkey=Gene;gene=pilZ;gene_biotype=protein_coding;locus_tag=azo1597
AM406670.1	EMBL	CDS	1753253	1753624	.	+	0	ID=cds1595;Parent=gene1631;Dbxref=EnsemblGenomes-Gn:azo1597,EnsemblGenomes-Tr:CAL94214,GOA:A1K5V9,InterPro:IPR009875,UniProtKB/TrEMBL:A1K5V9,NCBI_GP:CAL94214.1;Name=CAL94214.1;Note=Type IV pilus biogenesis protein PilZ%2C 56%25 identity to TrEMBL%3BQ87YH3%2C Q8PBU4. Has PF07238%2C Type IV pilus assembly protein PilZ%3B IPR009875 %3BThis family consists of several bacterial type IV pilus assembly proteins. PilZ is thought to have a cytoplasmic location and be essential for type 4 fimbrial biogenesis but its exact function is unknown.;gbkey=CDS;gene=pilZ;product=Type IV pilus biogenesis protein PilZ;protein_id=CAL94214.1;transl_table=11
AM406670.1	EMBL	gene	1753650	1754420	.	+	.	ID=gene1632;Name=azo1598;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1598
AM406670.1	EMBL	CDS	1753650	1754420	.	+	0	ID=cds1596;Parent=gene1632;Dbxref=EnsemblGenomes-Gn:azo1598,EnsemblGenomes-Tr:CAL94215,GOA:A1K5W0,InterPro:IPR001130,InterPro:IPR015991,InterPro:IPR018228,UniProtKB/TrEMBL:A1K5W0,NCBI_GP:CAL94215.1;Name=CAL94215.1;Note=Putative deoxyribonuclease yabD (EC 3.1.21.-). InterPro: Uncharacterized protein family UPF0006. TIGR00010: deoxyribonuclease TatD family.%3B~Specificity unclear;gbkey=CDS;product=putative deoxyribonuclease;protein_id=CAL94215.1;transl_table=11
AM406670.1	EMBL	gene	1754407	1755096	.	+	.	ID=gene1633;Name=ank1;gbkey=Gene;gene=ank1;gene_biotype=protein_coding;locus_tag=azo1599
AM406670.1	EMBL	CDS	1754407	1755096	.	+	0	ID=cds1597;Parent=gene1633;Dbxref=EnsemblGenomes-Gn:azo1599,EnsemblGenomes-Tr:CAL94216,InterPro:IPR002110,InterPro:IPR020683,UniProtKB/TrEMBL:A1K5W1,NCBI_GP:CAL94216.1;Name=CAL94216.1;Note=Hypothetical protein KIAA1223 (Fragment). TREMBL:Q8XYH0:35%25 identity%3B TREMBL:Q7VXC9:35%25 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes.Each Ankyrin repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90 angle. The repeats stack together to form an L-shaped structure InterPro: Ankyrin-repeat Pfam:Phage_integr_N:Phage integrase%2C N-terminal SAM-like wecB_tagA_cpsF: glycosyl transferase. Transmembrane helices 0 and presence of signal peptide (Signal P)for exporting.(probably signal peptide bearing exported protein)%3B~Specificity unclear;gbkey=CDS;gene=ank1;product=putative ankyrin repeat harbouring exported protein;protein_id=CAL94216.1;transl_table=11
AM406670.1	EMBL	gene	1755103	1755936	.	-	.	ID=gene1634;Name=azo1600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1600
AM406670.1	EMBL	CDS	1755103	1755936	.	-	0	ID=cds1598;Parent=gene1634;Dbxref=EnsemblGenomes-Gn:azo1600,EnsemblGenomes-Tr:CAL94217,UniProtKB/TrEMBL:A1K5W2,NCBI_GP:CAL94217.1;Name=CAL94217.1;Note=Conserved hypothetical protein. Homology to Rgel02003216 of Rubrivivax gelatinosus of 54%25 (gi|47572589|ref|ZP_00242632.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94217.1;transl_table=11
AM406670.1	EMBL	gene	1755933	1756850	.	-	.	ID=gene1635;Name=azo1601;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1601
AM406670.1	EMBL	CDS	1755933	1756850	.	-	0	ID=cds1599;Parent=gene1635;Dbxref=EnsemblGenomes-Gn:azo1601,EnsemblGenomes-Tr:CAL94218,InterPro:IPR000286,InterPro:IPR023801,UniProtKB/TrEMBL:A1K5W3,NCBI_GP:CAL94218.1;Name=CAL94218.1;Note=Histone deacetylases catalyse the removal of the acetyl group from histones. Histone deacetylase%2C acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of an ancient family%2C TREMBL:Q7NVL6 (58%25 identity)%3B TREMBL:Q8XZ00 (57%25 identity). InterPro (IPR000286): Histone deacetylase superfamily Pfam (PF00850): Histone deacetylase domain.%3B~Family membership;gbkey=CDS;product=histone deacetylase family protein;protein_id=CAL94218.1;transl_table=11
AM406670.1	EMBL	gene	1756888	1757868	.	-	.	ID=gene1636;Name=azo1602;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1602
AM406670.1	EMBL	CDS	1756888	1757868	.	-	0	ID=cds1600;Parent=gene1636;Dbxref=EnsemblGenomes-Gn:azo1602,EnsemblGenomes-Tr:CAL94219,InterPro:IPR002931,InterPro:IPR013589,UniProtKB/TrEMBL:A1K5W4,NCBI_GP:CAL94219.1;Name=CAL94219.1;Note=Conserved hypothetical protein. Homology to Rv2569c/MT2645/Mb2599c of M. bovis of 38%25. Pfam: Transglutaminase-like superfamily. no signal peptide no TMHs%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94219.1;transl_table=11
AM406670.1	EMBL	gene	1757930	1760416	.	-	.	ID=gene1637;Name=azo1603;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1603
AM406670.1	EMBL	CDS	1757930	1760416	.	-	0	ID=cds1601;Parent=gene1637;Dbxref=EnsemblGenomes-Gn:azo1603,EnsemblGenomes-Tr:CAL94220,InterPro:IPR007296,InterPro:IPR007302,UniProtKB/TrEMBL:A1K5W5,NCBI_GP:CAL94220.1;Name=CAL94220.1;Note=Conserved hypothetical protein%2C52%25 Identity to TrEMBL%3BQ9HUN7. Has PF04169%3BDomain of unknown function (DUF404)%3B(IPR007297)This is a protein of unknown function. It sometimes occurs in combination with two domains of unknown function DUF403 (IPR007296) and DUF407 (IPR007302). Has PF04174%3BDomain of unknown function (DUF407)%3BThis is a protein of unknown function. It sometimes occurs in combination with two domains of unknown function DUF403 (IPR007296) and DUF404 (IPR007297). Has PF04168%3BBacterial domain of unknown function (DUF403)%3BThis is a protein of unknown function. It sometimes occurs in combination with two domains of unknown function DUF404 (IPR007297) and DUF407 (IPR007302).%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94220.1;transl_table=11
AM406670.1	EMBL	gene	1760466	1763846	.	-	.	ID=gene1638;Name=azo1604;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1604
AM406670.1	EMBL	CDS	1760466	1763846	.	-	0	ID=cds1602;Parent=gene1638;Dbxref=EnsemblGenomes-Gn:azo1604,EnsemblGenomes-Tr:CAL94221,InterPro:IPR002931,InterPro:IPR013589,InterPro:IPR018667,UniProtKB/TrEMBL:A1K5W6,NCBI_GP:CAL94221.1;Name=CAL94221.1;Note=Transglutaminase-like superfamily domain protein%3B67%25 identity (79%25 similarity) to TrEMBL%3BQ87VL0. TrEMBL%3BQ6N3E0(57%25 identity). Has SMART%3BSM00460%2CTGc%3BTransglutaminase/protease-like homologues: (IPR002931):Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction%2C the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular%2C and it is likely that the eukaryotic intracellular proteins are involved in signalling events. NO signal peptide or TMH present.%3B~High confidence in function and specificity;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94221.1;transl_table=11
AM406670.1	EMBL	gene	1764095	1765264	.	+	.	ID=gene1639;Name=hipO2;gbkey=Gene;gene=hipO2;gene_biotype=protein_coding;locus_tag=azo1605
AM406670.1	EMBL	CDS	1764095	1765264	.	+	0	ID=cds1603;Parent=gene1639;Dbxref=EnsemblGenomes-Gn:azo1605,EnsemblGenomes-Tr:CAL94222,GOA:A1K5W7,InterPro:IPR002933,InterPro:IPR011650,InterPro:IPR017439,UniProtKB/TrEMBL:A1K5W7,NCBI_GP:CAL94222.1;Name=CAL94222.1;Note=Hippurate hydrolase (EC 3.5.1.32) (Benzoylglycine amidohydrolase) (Hippuricase). TREMBL:Q7WFU4: 48%25 identity%2C 58%25 similarity InterPro:IPR002933%3B Peptidase_M20. IPR010168%3B Pept_M20D_amidh. Pfam: PF01546%3B Peptidase_M20%3B 1. TIGRFAMs TIGR01891%3B amidohydrolases No signal peptide present No transmembrane helices present mreB: cell shape determining protein M%3B~High confidence in function and specificity;gbkey=CDS;gene=hipO2;product=probable hippurate hydrolase;protein_id=CAL94222.1;transl_table=11
AM406670.1	EMBL	gene	1765274	1767766	.	+	.	ID=gene1640;Name=azo1606;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1606
AM406670.1	EMBL	CDS	1765274	1767766	.	+	0	ID=cds1604;Parent=gene1640;Dbxref=EnsemblGenomes-Gn:azo1606,EnsemblGenomes-Tr:CAL94223,GOA:A1K5W8,InterPro:IPR003838,UniProtKB/TrEMBL:A1K5W8,NCBI_GP:CAL94223.1;Name=CAL94223.1;Note=Similar to TREMBL:Q7WGZ1 (41%25 identity)%3B TREMBL:Q7W9R7 (41%25 identity)%3B TREMBL:Q8XXM2 (37%25 identity). Pfam (DUF214): Predicted permease. TMHMM reporting 10 transmembrane helices.%3B~Specificity unclear;gbkey=CDS;product=putative inner membrane transport permease;protein_id=CAL94223.1;transl_table=11
AM406670.1	EMBL	gene	1767782	1768855	.	-	.	ID=gene1641;Name=moaA;gbkey=Gene;gene=moaA;gene_biotype=protein_coding;locus_tag=azo1607
AM406670.1	EMBL	CDS	1767782	1768855	.	-	0	ID=cds1605;Parent=gene1641;Dbxref=EnsemblGenomes-Gn:azo1607,EnsemblGenomes-Tr:CAL94224,GOA:A1K5W9,InterPro:IPR000385,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR010505,InterPro:IPR013483,InterPro:IPR013785,UniProtKB/TrEMBL:A1K5W9,NCBI_GP:CAL94224.1;Name=CAL94224.1;Note=Molybdenum cofactor biosynthesis protein A. Together with moaC is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z (By similarity). InterPro: MoaA / nifB / pqqE family%3B~High confidence in function and specificity;gbkey=CDS;gene=moaA;product=molybdenum cofactor biosynthesis protein A;protein_id=CAL94224.1;transl_table=11
AM406670.1	EMBL	gene	1769067	1769345	.	+	.	ID=gene1642;Name=azo1608;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1608
AM406670.1	EMBL	CDS	1769067	1769345	.	+	0	ID=cds1606;Parent=gene1642;Dbxref=EnsemblGenomes-Gn:azo1608,EnsemblGenomes-Tr:CAL94225,UniProtKB/TrEMBL:A1K5X0,NCBI_GP:CAL94225.1;Name=CAL94225.1;Note=hypothetical protein having 55%25 similarity with Nitrosomonas europaea No Signal peptide present No TMH reported.;gbkey=CDS;product=hypothetical protein;protein_id=CAL94225.1;transl_table=11
AM406670.1	EMBL	gene	1769477	1771894	.	+	.	ID=gene1643;Name=azo1609;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1609
AM406670.1	EMBL	CDS	1769477	1771894	.	+	0	ID=cds1607;Parent=gene1643;Dbxref=EnsemblGenomes-Gn:azo1609,EnsemblGenomes-Tr:CAL94226,GOA:A1K5X1,InterPro:IPR008269,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR027065,InterPro:IPR027417,UniProtKB/TrEMBL:A1K5X1,NCBI_GP:CAL94226.1;Name=CAL94226.1;Note=Conserved hypothetical ATP-dependent protease. Homology to gsu2433 of G. sulfurreducens of 40%25 (tremblnew|AAR35806). Tigrfam:lon_rel: ATP-dependent protease puta no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;product=conserved hypothetical ATP-dependent protease;protein_id=CAL94226.1;transl_table=11
AM406670.1	EMBL	gene	1771974	1772049	.	-	.	ID=gene1644;Name=tRNA-Asn;gbkey=Gene;gene=tRNA-Asn;gene_biotype=tRNA;locus_tag=azo_tRNA_0031
AM406670.1	EMBL	tRNA	1771974	1772049	.	-	.	ID=rna36;Parent=gene1644;anticodon=(pos:complement(1772014..1772016));gbkey=tRNA;gene=tRNA-Asn;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Asn
AM406670.1	EMBL	exon	1771974	1772049	.	-	.	ID=id37;Parent=rna36;anticodon=(pos:complement(1772014..1772016));gbkey=tRNA;gene=tRNA-Asn;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Asn
AM406670.1	EMBL	gene	1772115	1772190	.	-	.	ID=gene1645;Name=tRNA-Asn;gbkey=Gene;gene=tRNA-Asn;gene_biotype=tRNA;locus_tag=azo_tRNA_0032
AM406670.1	EMBL	tRNA	1772115	1772190	.	-	.	ID=rna37;Parent=gene1645;anticodon=(pos:complement(1772155..1772157));gbkey=tRNA;gene=tRNA-Asn;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Asn
AM406670.1	EMBL	exon	1772115	1772190	.	-	.	ID=id38;Parent=rna37;anticodon=(pos:complement(1772155..1772157));gbkey=tRNA;gene=tRNA-Asn;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Asn
AM406670.1	EMBL	gene	1772287	1773495	.	-	.	ID=gene1646;Name=tyrB;gbkey=Gene;gene=tyrB;gene_biotype=protein_coding;locus_tag=azo1610
AM406670.1	EMBL	CDS	1772287	1773495	.	-	0	ID=cds1608;Parent=gene1646;Dbxref=EnsemblGenomes-Gn:azo1610,EnsemblGenomes-Tr:CAL94227,GOA:A1K5X2,InterPro:IPR000796,InterPro:IPR004838,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015424,UniProtKB/TrEMBL:A1K5X2,NCBI_GP:CAL94227.1;Name=CAL94227.1;Note=Probable aromatic-amino-acid aminotransferase. Homology to tyrB of E. coli of 52%25 (sprot|TYRB_ECO). Is involved in biosynthesis of phe%2C tyr%2C asp and leu. Catalyse the reactiion: an aromatic amino acid + 2-oxoglutarate %3D an aromatic oxo acid + l-glutamate. Pfam: Aminotransferase class I and II no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=tyrB;product=probable aromatic-amino-acid aminotransferase;protein_id=CAL94227.1;transl_table=11
AM406670.1	EMBL	gene	1773639	1775714	.	+	.	ID=gene1647;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=azo1611
AM406670.1	EMBL	CDS	1773639	1775714	.	+	0	ID=cds1609;Parent=gene1647;Dbxref=EnsemblGenomes-Gn:azo1611,EnsemblGenomes-Tr:CAL94228,GOA:A1K5X3,InterPro:IPR001650,InterPro:IPR001943,InterPro:IPR004807,InterPro:IPR006935,InterPro:IPR014001,InterPro:IPR024759,InterPro:IPR027417,UniProtKB/TrEMBL:A1K5X3,NCBI_GP:CAL94228.1;Name=CAL94228.1;Note=UvrABC system protein B (UvrB protein) . The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found the DNA wraps around the other uvrB subunit that will check the other stand for damage (By similarity). InterPro: Excinuclease ABC B subunit. uvrb: excinuclease ABC B subunit.%3B~High confidence in function and specificity;gbkey=CDS;gene=uvrB;product=excinuclease ABC subunit B;protein_id=CAL94228.1;transl_table=11
AM406670.1	EMBL	gene	1775724	1776188	.	+	.	ID=gene1648;Name=ptpA;gbkey=Gene;gene=ptpA;gene_biotype=protein_coding;locus_tag=azo1612
AM406670.1	EMBL	CDS	1775724	1776188	.	+	0	ID=cds1610;Parent=gene1648;Dbxref=EnsemblGenomes-Gn:azo1612,EnsemblGenomes-Tr:CAL94229,GOA:A1K5X4,InterPro:IPR000106,InterPro:IPR017867,InterPro:IPR023485,UniProtKB/TrEMBL:A1K5X4,NCBI_GP:CAL94229.1;Name=CAL94229.1;Note=Low molecular weight protein-tyrosine-phosphatase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=ptpA;product=PtpA protein;protein_id=CAL94229.1;transl_table=11
AM406670.1	EMBL	gene	1776283	1779327	.	-	.	ID=gene1649;Name=rne;gbkey=Gene;gene=rne;gene_biotype=protein_coding;locus_tag=azo1613
AM406670.1	EMBL	CDS	1776283	1779327	.	-	0	ID=cds1611;Parent=gene1649;Dbxref=EnsemblGenomes-Gn:azo1613,EnsemblGenomes-Tr:CAL94230,GOA:A1K5X5,InterPro:IPR003029,InterPro:IPR004659,InterPro:IPR012340,InterPro:IPR019307,InterPro:IPR022967,InterPro:IPR028878,UniProtKB/TrEMBL:A1K5X5,NCBI_GP:CAL94230.1;Name=CAL94230.1;Note=Probable ribonuclease E (EC 3.1.4.-) (RNase E). Homology to rne of E. coli of 44%25 (sprot|RNE_ECOLI) This protein matures 5S rRNA from its precursors from all the rRNA genes. It is the major endoribonuclease participating in mRNA turnover. Interpro: Ribonuclease E and G (IPR004659)%3B S1 RNA binding domain (IPR003029) Pfam: S1 RNA binding domain Tigrfam: RNase EG: ribonuclease%2CRne/Rng family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=rne;product=probable ribonuclease E;protein_id=CAL94230.1;transl_table=11
AM406670.1	EMBL	gene	1779739	1780698	.	+	.	ID=gene1650;Name=rluC;gbkey=Gene;gene=rluC;gene_biotype=protein_coding;locus_tag=azo1614
AM406670.1	EMBL	CDS	1779739	1780698	.	+	0	ID=cds1612;Parent=gene1650;Dbxref=EnsemblGenomes-Gn:azo1614,EnsemblGenomes-Tr:CAL94231,GOA:A1K5X6,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR006225,InterPro:IPR020103,UniProtKB/TrEMBL:A1K5X6,NCBI_GP:CAL94231.1;Name=CAL94231.1;Note=Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil at positions 955 2504 and 2580 in 23S ribosomal RNA.%3B~Family membership;gbkey=CDS;gene=rluC;product=ribosomal large subunit pseudouridine synthase C;protein_id=CAL94231.1;transl_table=11
AM406670.1	EMBL	gene	1780691	1781347	.	+	.	ID=gene1651;Name=azo1615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1615
AM406670.1	EMBL	CDS	1780691	1781347	.	+	0	ID=cds1613;Parent=gene1651;Dbxref=EnsemblGenomes-Gn:azo1615,EnsemblGenomes-Tr:CAL94232,GOA:A1K5X7,InterPro:IPR006439,InterPro:IPR023198,InterPro:IPR023214,UniProtKB/TrEMBL:A1K5X7,NCBI_GP:CAL94232.1;Name=CAL94232.1;Note=TREMBL:Q7VSFO: Probable hydrolase%2C 55%25 identity%2C63%25 similarity Phosphoglycolate phosphatase (PGP). InterPro:PR006402%3B HAD-SF-IA-v3. IPR006439%3B HAD_SF_A_v1. IPR005834%3B Hydrolase. Pfam:PF00702%3B Hydrolase%3B Haloacid dehaloginase like hydrolase TIGRFAMs:TIGR01549%3B HAD-SF-IA-v1%3B TIGR01509%3B HAD-SF-IA-v3%3B serB: phosphoserine phosphatase SerB hstdl_phs_rel: histidinol phosphatase-%3B~Function unclear;gbkey=CDS;product=probable hydrolase;protein_id=CAL94232.1;transl_table=11
AM406670.1	EMBL	gene	1781326	1781682	.	+	.	ID=gene1652;Name=azo1616;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1616
AM406670.1	EMBL	CDS	1781326	1781682	.	+	0	ID=cds1614;Parent=gene1652;Dbxref=EnsemblGenomes-Gn:azo1616,EnsemblGenomes-Tr:CAL94233,GOA:A1K5X8,InterPro:IPR017941,UniProtKB/TrEMBL:A1K5X8,NCBI_GP:CAL94233.1;Name=CAL94233.1;Note=Conserved hypothetical ferredoxin subunits of nitrite reductase. Conserved Rieske domain is present. Similar to NirD from E.Coli. InterPro: Rieske iron-sulfur protein 2Fe-2S subunit Non-secretory protein%3B~Function unclear;gbkey=CDS;product=conserved hypothetical ferredoxin protein;protein_id=CAL94233.1;transl_table=11
AM406670.1	EMBL	gene	1781715	1782626	.	+	.	ID=gene1653;Name=azo1617;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1617
AM406670.1	EMBL	CDS	1781715	1782626	.	+	0	ID=cds1615;Parent=gene1653;Dbxref=EnsemblGenomes-Gn:azo1617,EnsemblGenomes-Tr:CAL94234,GOA:A1K5X9,InterPro:IPR002142,InterPro:IPR029045,UniProtKB/TrEMBL:A1K5X9,NCBI_GP:CAL94234.1;Name=CAL94234.1;Note=Conserved hypothetical peptidase. Haomology to ne1024 of N. europaea of 59%25 (trembl|Q82VP2) InterPro: Peptidase family U7 (IPR002142) Tigrfam: SppA_dom: signal peptide peptidase SppA Pfam: Peptidase family U7 no signal peptide probable 1 TMH%3B~High confidence in function and specificity;gbkey=CDS;product=conserved hypothetical peptidase;protein_id=CAL94234.1;transl_table=11
AM406670.1	EMBL	gene	1782623	1783348	.	-	.	ID=gene1654;Name=azo1618;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1618
AM406670.1	EMBL	CDS	1782623	1783348	.	-	0	ID=cds1616;Parent=gene1654;Dbxref=EnsemblGenomes-Gn:azo1618,EnsemblGenomes-Tr:CAL94235,GOA:A1K5Y0,InterPro:IPR000878,InterPro:IPR008189,InterPro:IPR014776,UniProtKB/TrEMBL:A1K5Y0,NCBI_GP:CAL94235.1;Name=CAL94235.1;Note=Conserved hypothetical protein. Homology to bpp3312 of B. parapertussis (trembl|Q7WD15). TIGR00096: conserved hypothetical protein Pfam: Tetrapyrrole (Corrin/Porphyrin) Methyltransferase no signal peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94235.1;transl_table=11
AM406670.1	EMBL	gene	1783345	1783923	.	-	.	ID=gene1655;Name=yceF;gbkey=Gene;gene=yceF;gene_biotype=protein_coding;locus_tag=azo1619
AM406670.1	EMBL	CDS	1783345	1783923	.	-	0	ID=cds1617;Parent=gene1655;Dbxref=EnsemblGenomes-Gn:azo1619,EnsemblGenomes-Tr:CAL94236,GOA:A1K5Y1,InterPro:IPR003697,InterPro:IPR029001,UniProtKB/TrEMBL:A1K5Y1,NCBI_GP:CAL94236.1;Name=CAL94236.1;Note=Maf-like protein yceF. InterPro: Maf-like protein%3B~Family membership;gbkey=CDS;gene=yceF;product=Maf-like protein;protein_id=CAL94236.1;transl_table=11
AM406670.1	EMBL	gene	1784046	1784531	.	+	.	ID=gene1656;Name=azo1620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1620
AM406670.1	EMBL	CDS	1784046	1784531	.	+	0	ID=cds1618;Parent=gene1656;Dbxref=EnsemblGenomes-Gn:azo1620,EnsemblGenomes-Tr:CAL94237,InterPro:IPR003772,UniProtKB/TrEMBL:A1K5Y2,NCBI_GP:CAL94237.1;Name=CAL94237.1;Note=Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42%25 (trembl:Q7NSK4). Has PF02620%2C Uncharacterized ACR%2CIPR003772%3BThis entry describes proteins of unknown function. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94237.1;transl_table=11
AM406670.1	EMBL	gene	1784569	1784748	.	+	.	ID=gene1657;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=azo1621
AM406670.1	EMBL	CDS	1784569	1784748	.	+	0	ID=cds1619;Parent=gene1657;Dbxref=EnsemblGenomes-Gn:azo1621,EnsemblGenomes-Tr:CAL94238,GOA:A1K5Y3,InterPro:IPR002677,InterPro:IPR011332,NCBI_GP:CAL94238.1;Name=CAL94238.1;Note=50S ribosomal protein L32.%3B~Family membership;gbkey=CDS;gene=rpmF;product=50S ribosomal protein L32;protein_id=CAL94238.1;transl_table=11
AM406670.1	EMBL	gene	1784837	1785853	.	+	.	ID=gene1658;Name=plsX;gbkey=Gene;gene=plsX;gene_biotype=protein_coding;locus_tag=azo1622
AM406670.1	EMBL	CDS	1784837	1785853	.	+	0	ID=cds1620;Parent=gene1658;Dbxref=EnsemblGenomes-Gn:azo1622,EnsemblGenomes-Tr:CAL94239,GOA:A1K5Y4,InterPro:IPR003664,InterPro:IPR012281,InterPro:IPR024084,NCBI_GP:CAL94239.1;Name=CAL94239.1;Note=Function:-The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes [1]. The plsX gene encodes a poorly understood enzyme of phospholipid metabolism [2]. Belongs to the plsx family. Entry name :-SWISSPROT:PLSX_SALTY Prim. accession # O85138 Identities %3D 147/336 (43%25) InterPro assignment: IPR003664 PFAM: PF02504 Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.000%3B~Family membership;gbkey=CDS;gene=plsX;product=probable fatty acid/phospholipid synthesis protein plsX;protein_id=CAL94239.1;transl_table=11
AM406670.1	EMBL	gene	1785850	1786815	.	+	.	ID=gene1659;Name=fabH;gbkey=Gene;gene=fabH;gene_biotype=protein_coding;locus_tag=azo1623
AM406670.1	EMBL	CDS	1785850	1786815	.	+	0	ID=cds1621;Parent=gene1659;Dbxref=EnsemblGenomes-Gn:azo1623,EnsemblGenomes-Tr:CAL94240,GOA:A1K5Y5,InterPro:IPR004655,InterPro:IPR013747,InterPro:IPR013751,InterPro:IPR016038,InterPro:IPR016039,NCBI_GP:CAL94240.1;Name=CAL94240.1;Note=Function:-Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and/or straight-chain of fatty acids (By similarity). Entry name SWISSPROT:FABH_ECOLI Prim. accession # P24249 Identities %3D 171/320 (53%25) InterPro :- IPR004655%3B FabH. IPR000794%3B Ketoacyl_synth. Prediction: Non-secretory protein Signal peptide probability: 0.022 Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=fabH;product=probable 3-oxoacyl-(acyl-carrier-protein) synthase III;protein_id=CAL94240.1;transl_table=11
AM406670.1	EMBL	gene	1786843	1787772	.	+	.	ID=gene1660;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;locus_tag=azo1624
AM406670.1	EMBL	CDS	1786843	1787772	.	+	0	ID=cds1622;Parent=gene1660;Dbxref=EnsemblGenomes-Gn:azo1624,EnsemblGenomes-Tr:CAL94241,GOA:A1K5Y6,InterPro:IPR001227,InterPro:IPR004410,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR024925,UniProtKB/TrEMBL:A1K5Y6,NCBI_GP:CAL94241.1;Name=CAL94241.1;Note=Probable malonyl CoA-acyl carrier protein transacylase. Homology to fabD of E. coli of 54%25 (sprot|FABD_ECOLI). Is involved in fatty acid biosynthesis and transfers the malonyl moeity from coenzyme A to acyl-carrier protein. InterPro: Acyl transferase domain (IPR001227)%3B Manyl CoA-acyl carrier protein transaylase (IPR004410) Pfam: Acyl transferase domain Tigrfam: fabD: malonyl CoA-acyl carrier protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fabD;product=probable malonyl CoA-acyl carrier protein transacylase;protein_id=CAL94241.1;transl_table=11
AM406670.1	EMBL	gene	1787775	1788524	.	+	.	ID=gene1661;Name=fabG1;gbkey=Gene;gene=fabG1;gene_biotype=protein_coding;locus_tag=azo1625
AM406670.1	EMBL	CDS	1787775	1788524	.	+	0	ID=cds1623;Parent=gene1661;Dbxref=EnsemblGenomes-Gn:azo1625,EnsemblGenomes-Tr:CAL94242,GOA:A1K5Y7,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR011284,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K5Y7,NCBI_GP:CAL94242.1;Name=CAL94242.1;Note=Belongs to the short-chain dehydrogenases/reductases (SDR) family. Catalyzes first reduction step in fatty acid biosynthesis pathway%2CTREMBL:Q7W5I6 (62%25 identity)%3B SWISSPROT:O54438 (54%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~High confidence in function and specificity;gbkey=CDS;gene=fabG1;product=3-oxoacyl-[acyl-carrier-protein] reductase;protein_id=CAL94242.1;transl_table=11
AM406670.1	EMBL	gene	1788618	1788857	.	+	.	ID=gene1662;Name=acpP;gbkey=Gene;gene=acpP;gene_biotype=protein_coding;locus_tag=azo1626
AM406670.1	EMBL	CDS	1788618	1788857	.	+	0	ID=cds1624;Parent=gene1662;Dbxref=EnsemblGenomes-Gn:azo1626,EnsemblGenomes-Tr:CAL94243,GOA:A1K5Y8,InterPro:IPR003231,InterPro:IPR006162,InterPro:IPR009081,NCBI_GP:CAL94243.1;Name=CAL94243.1;Note=Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups%2C TREMBL:Q7NSK9 (74%25 identity)%3B SWISSPROT:Q9JR72 (71%25 identity). Pfam (PF00550): Phosphopantetheine attachment site. TIGRFAM (TIGR00517): Acyl carrier protein. HTH reporting nulceic acid binding motif.%3B~Family membership;gbkey=CDS;gene=acpP;product=AcpP protein;protein_id=CAL94243.1;transl_table=11
AM406670.1	EMBL	gene	1788940	1790175	.	+	.	ID=gene1663;Name=fabF1;gbkey=Gene;gene=fabF1;gene_biotype=protein_coding;locus_tag=azo1627
AM406670.1	EMBL	CDS	1788940	1790175	.	+	0	ID=cds1625;Parent=gene1663;Dbxref=EnsemblGenomes-Gn:azo1627,EnsemblGenomes-Tr:CAL94244,GOA:A1K5Y9,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR017568,InterPro:IPR018201,UniProtKB/TrEMBL:A1K5Y9,NCBI_GP:CAL94244.1;Name=CAL94244.1;Note=Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-acp%2C TREMBL:Q7WD24 (70%25 identity)%3B SWISSPROT:P39435 (57%25 identity). InterPro (IPR000794): Beta-ketoacyl synthase. Pfam (PF00109): Beta-ketoacyl synthase%2C N-terminal domain. Pfam (PF02801): Beta-ketoacyl synthase%2C C-terminal domain.%3B~High confidence in function and specificity;gbkey=CDS;gene=fabF1;product=3-oxoacyl-[acyl-carrier-protein] synthase;protein_id=CAL94244.1;transl_table=11
AM406670.1	EMBL	gene	1790198	1790665	.	+	.	ID=gene1664;Name=azo1628;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1628
AM406670.1	EMBL	CDS	1790198	1790665	.	+	0	ID=cds1626;Parent=gene1664;Dbxref=EnsemblGenomes-Gn:azo1628,EnsemblGenomes-Tr:CAL94245,UniProtKB/TrEMBL:A1K5Z0,NCBI_GP:CAL94245.1;Name=CAL94245.1;Note=Conserved hypothetical membrane protein. Homology to ebA5460 of Azoarcus sp. EbN1 of 32%25 (gnl|keqq|eba:ebA5460(KEGG)). No domains predicted. No signal peptide. 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94245.1;transl_table=11
AM406670.1	EMBL	gene	1790655	1792244	.	-	.	ID=gene1665;Name=nadB;gbkey=Gene;gene=nadB;gene_biotype=protein_coding;locus_tag=azo1629
AM406670.1	EMBL	CDS	1790655	1792244	.	-	0	ID=cds1627;Parent=gene1665;Dbxref=EnsemblGenomes-Gn:azo1629,EnsemblGenomes-Tr:CAL94246,GOA:A1K5Z1,InterPro:IPR003953,InterPro:IPR005288,InterPro:IPR013027,InterPro:IPR015939,InterPro:IPR027477,UniProtKB/TrEMBL:A1K5Z1,NCBI_GP:CAL94246.1;Name=CAL94246.1;Note=L-aspartate oxidase 1 (EC 1.4.3.16) (LASPO 1) (Quinolinate synthetase B 1). Catalyzes the oxidation of L-aspartate to iminoaspartate. InterPro: Fumarate reductase/succinate dehydrogenase flavoprotein N-terminal%3B~High confidence in function and specificity;gbkey=CDS;gene=nadB;product=L-aspartate oxidase;protein_id=CAL94246.1;transl_table=11
AM406670.1	EMBL	gene	1792464	1793063	.	+	.	ID=gene1666;Name=algU;gbkey=Gene;gene=algU;gene_biotype=protein_coding;locus_tag=azo1630
AM406670.1	EMBL	CDS	1792464	1793063	.	+	0	ID=cds1628;Parent=gene1666;Dbxref=EnsemblGenomes-Gn:azo1630,EnsemblGenomes-Tr:CAL94247,GOA:A1K5Z2,InterPro:IPR000838,InterPro:IPR007627,InterPro:IPR011991,InterPro:IPR013249,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,InterPro:IPR014286,UniProtKB/TrEMBL:A1K5Z2,NCBI_GP:CAL94247.1;Name=CAL94247.1;Note=RNA polymerase sigma factor%2C Myxococcus xanthus carQ%3B Alcaligenes eutrophus plasmid pMOL28-encoded cnrH%3B Escherichia coli fecI%3B Pseudomonas syringae hrpL%3B rpoE from Escherichia coli%2C Salmonella typhimurium and Haemophilus influenzae%3B Streptomyces coelicolor sigE%3B and Bacillus subtilis sigma factors sigV%2C sigX%2C sigY and sigZ.%3B~High confidence in function and specificity;gbkey=CDS;gene=algU;product=RNA polymerase sigma factor;protein_id=CAL94247.1;transl_table=11
AM406670.1	EMBL	gene	1793073	1793618	.	+	.	ID=gene1667;Name=rseA;gbkey=Gene;gene=rseA;gene_biotype=protein_coding;locus_tag=azo1631
AM406670.1	EMBL	CDS	1793073	1793618	.	+	0	ID=cds1629;Parent=gene1667;Dbxref=EnsemblGenomes-Gn:azo1631,EnsemblGenomes-Tr:CAL94248,GOA:A1K5Z3,InterPro:IPR005572,UniProtKB/TrEMBL:A1K5Z3,NCBI_GP:CAL94248.1;Name=CAL94248.1;Note=Putative sigma-E factor%2C negative regulatory protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=rseA;product=putative sigma-E factor%2C negative regulatory protein;protein_id=CAL94248.1;transl_table=11
AM406670.1	EMBL	gene	1793615	1794586	.	+	.	ID=gene1668;Name=rseB;gbkey=Gene;gene=rseB;gene_biotype=protein_coding;locus_tag=azo1632
AM406670.1	EMBL	CDS	1793615	1794586	.	+	0	ID=cds1630;Parent=gene1668;Dbxref=EnsemblGenomes-Gn:azo1632,EnsemblGenomes-Tr:CAL94249,InterPro:IPR005588,UniProtKB/TrEMBL:A1K5Z4,NCBI_GP:CAL94249.1;Name=CAL94249.1;Note=Putative sigma factor regulatory protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=rseB;product=putative sigma factor regulatory protein;protein_id=CAL94249.1;transl_table=11
AM406670.1	EMBL	gene	1794586	1795026	.	+	.	ID=gene1669;Name=rseC;gbkey=Gene;gene=rseC;gene_biotype=protein_coding;locus_tag=azo1633
AM406670.1	EMBL	CDS	1794586	1795026	.	+	0	ID=cds1631;Parent=gene1669;Dbxref=EnsemblGenomes-Gn:azo1633,EnsemblGenomes-Tr:CAL94250,InterPro:IPR007359,UniProtKB/TrEMBL:A1K5Z5,NCBI_GP:CAL94250.1;Name=CAL94250.1;Note=Putative sigma-E factor regulatory protein RseC%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=rseC;product=putative sigma-E factor regulatory protein RseC;protein_id=CAL94250.1;transl_table=11
AM406670.1	EMBL	gene	1795023	1796441	.	+	.	ID=gene1670;Name=mucD2;gbkey=Gene;gene=mucD2;gene_biotype=protein_coding;locus_tag=azo1634
AM406670.1	EMBL	CDS	1795023	1796441	.	+	0	ID=cds1632;Parent=gene1670;Dbxref=EnsemblGenomes-Gn:azo1634,EnsemblGenomes-Tr:CAL94251,GOA:A1K5Z6,InterPro:IPR001478,InterPro:IPR001940,InterPro:IPR009003,InterPro:IPR011782,UniProtKB/TrEMBL:A1K5Z6,NCBI_GP:CAL94251.1;Name=CAL94251.1;Note=Probable serine protease MucD. Homology to mucD of P. aruginosa of 47%25 (trembl|Q57155) InterPro: Serine proteases trypsin family (IPR001254)%3B PDZ domain (also known as DHR or GLGF) (IPR001478)%3B Chymotrypsin serin protease family (S1) (IPR001314)%3B HtrA/DegQ protease family (IPR001940) Pfam: Trypsin%3B PDZ domain (also known as DHR or GLGF) signal peptide no TMHs ahpD_dom: alkylhydroperoxidase AhpD fam%3B~High confidence in function and specificity;gbkey=CDS;gene=mucD2;product=probable serine protease MucD;protein_id=CAL94251.1;transl_table=11
AM406670.1	EMBL	gene	1796438	1796695	.	+	.	ID=gene1671;Name=azo1635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1635
AM406670.1	EMBL	CDS	1796438	1796695	.	+	0	ID=cds1633;Parent=gene1671;Dbxref=EnsemblGenomes-Gn:azo1635,EnsemblGenomes-Tr:CAL94252,GOA:A1K5Z7,InterPro:IPR008554,InterPro:IPR012336,UniProtKB/TrEMBL:A1K5Z7,NCBI_GP:CAL94252.1;Name=CAL94252.1;Note=Conserved hypothetical thioredoxin. Homology to a putative thioredoxin of N. menigitidis (NMA0966) of 50%25. Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. no signal peptide no TMHs%3B~Function unclear;gbkey=CDS;product=thioredoxin-disulfide reductase;protein_id=CAL94252.1;transl_table=11
AM406670.1	EMBL	gene	1796728	1797744	.	-	.	ID=gene1672;Name=azo1636;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1636
AM406670.1	EMBL	CDS	1796728	1797744	.	-	0	ID=cds1634;Parent=gene1672;Dbxref=EnsemblGenomes-Gn:azo1636,EnsemblGenomes-Tr:CAL94253,GOA:A1K5Z8,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K5Z8,NCBI_GP:CAL94253.1;Name=CAL94253.1;Note=HTH-type transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=HTH-type transcriptional regulator;protein_id=CAL94253.1;transl_table=11
AM406670.1	EMBL	gene	1797863	1798198	.	+	.	ID=gene1673;Name=azo1637;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1637
AM406670.1	EMBL	CDS	1797863	1798198	.	+	0	ID=cds1635;Parent=gene1673;Dbxref=EnsemblGenomes-Gn:azo1637,EnsemblGenomes-Tr:CAL94254,UniProtKB/TrEMBL:A1K5Z9,NCBI_GP:CAL94254.1;Name=CAL94254.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide 3 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94254.1;transl_table=11
AM406670.1	EMBL	gene	1798230	1799195	.	+	.	ID=gene1674;Name=azo1638;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1638
AM406670.1	EMBL	CDS	1798230	1799195	.	+	0	ID=cds1636;Parent=gene1674;Dbxref=EnsemblGenomes-Gn:azo1638,EnsemblGenomes-Tr:CAL94255,GOA:A1K600,InterPro:IPR005064,UniProtKB/TrEMBL:A1K600,NCBI_GP:CAL94255.1;Name=CAL94255.1;Note=Putative exported protein%2C 39%25 identity (54%25 similarity)to TrEMBL%3BQ7VUI5 TrEMBL%3BQ7WNJ8. Has PF03401%3BBordetella uptake gene (bug) product%3B(IPR005064)These probable extra-cytoplasmic solute receptors are strongly overrepresented in several beta-proteobacteria. SIgnal Peptide Present. No TMH reported present.%3B~Specificity unclear;gbkey=CDS;product=putative exported protein;protein_id=CAL94255.1;transl_table=11
AM406670.1	EMBL	gene	1799548	1801344	.	+	.	ID=gene1675;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=azo1639
AM406670.1	EMBL	CDS	1799548	1801344	.	+	0	ID=cds1637;Parent=gene1675;Dbxref=EnsemblGenomes-Gn:azo1639,EnsemblGenomes-Tr:CAL94256,GOA:A1K601,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005225,InterPro:IPR006297,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR013842,InterPro:IPR027417,NCBI_GP:CAL94256.1;Name=CAL94256.1;Note=Probable GTP-binding protein lepA. Homology to lepA of E. coli of 67%25 (sprot|LEPA_ECOLI) LepA is a GTP-binding membrane protein related to EF-G and EF-Tu. InterPro: GTP-binding elongation factor (IPR000795)%3B Elongation factor TU domain 2 (IPR004161) Tigrfam: EF-1_alpha: translation elongation factor%2C subunit alpha Pfam: Elongation factor GTP binding domain%3B Elongation factor TU domain 2 no singal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=lepA;product=probable GTP-binding protein;protein_id=CAL94256.1;transl_table=11
AM406670.1	EMBL	gene	1801366	1802154	.	+	.	ID=gene1676;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=azo1640
AM406670.1	EMBL	CDS	1801366	1802154	.	+	0	ID=cds1638;Parent=gene1676;Dbxref=EnsemblGenomes-Gn:azo1640,EnsemblGenomes-Tr:CAL94257,GOA:A1K602,InterPro:IPR000223,InterPro:IPR015927,InterPro:IPR019533,InterPro:IPR019756,InterPro:IPR019757,InterPro:IPR019758,InterPro:IPR019759,InterPro:IPR028360,UniProtKB/TrEMBL:A1K602,NCBI_GP:CAL94257.1;Name=CAL94257.1;Note=Signal peptidase I (EC 3.4.21.89) (SPase I) (Leader peptidase I). SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by one or two N-terminal transmembrane domains%2C with the main part of the protein protuding in the periplasmic space. SPase I can cleave N-terminal leader sequences of nonlipoprotein that are exported by the SecYEG pathway or the twin arginine translocation (Tat) pathway. Pfam: Peptidase_S26 probable 2 TMH no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=lepB;product=LepB protein;protein_id=CAL94257.1;transl_table=11
AM406670.1	EMBL	gene	1802170	1802529	.	+	.	ID=gene1677;Name=azo1641;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1641
AM406670.1	EMBL	CDS	1802170	1802529	.	+	0	ID=cds1639;Parent=gene1677;Dbxref=EnsemblGenomes-Gn:azo1641,EnsemblGenomes-Tr:CAL94258,UniProtKB/TrEMBL:A1K603,NCBI_GP:CAL94258.1;Name=CAL94258.1;Note=Conserved hypothetical secreted protein. Homology with NE2325 of N.europaea of 41%25 (tremble:Q82SJ5) No domains predicted. Signal peptide Present. No TMH reported.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94258.1;transl_table=11
AM406670.1	EMBL	gene	1802535	1803206	.	+	.	ID=gene1678;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=azo1642
AM406670.1	EMBL	CDS	1802535	1803206	.	+	0	ID=cds1640;Parent=gene1678;Dbxref=EnsemblGenomes-Gn:azo1642,EnsemblGenomes-Tr:CAL94259,GOA:A1K604,InterPro:IPR000999,InterPro:IPR011907,InterPro:IPR014720,UniProtKB/TrEMBL:A1K604,NCBI_GP:CAL94259.1;Name=CAL94259.1;Note=Ribonuclease III Digests double-stranded rna. Involved in the processing of ribosomal rna precursors and of some mrnas. Catalysis of the endonucleolytic cleavage of RNA to 5'-phosphomonoesters 56%25 1. SM00358%3B DSRM%3B 1. SM00535%3B RIBOc%3B 1 EC: 3.1.26.3 (RNase III).%3B~High confidence in function and specificity;gbkey=CDS;gene=rnc;product=putative Ribonuclease III;protein_id=CAL94259.1;transl_table=11
AM406670.1	EMBL	gene	1803203	1804117	.	+	.	ID=gene1679;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;locus_tag=azo1643
AM406670.1	EMBL	CDS	1803203	1804117	.	+	0	ID=cds1641;Parent=gene1679;Dbxref=EnsemblGenomes-Gn:azo1643,EnsemblGenomes-Tr:CAL94260,GOA:A1K605,InterPro:IPR004044,InterPro:IPR005225,InterPro:IPR005662,InterPro:IPR006073,InterPro:IPR009019,InterPro:IPR015946,InterPro:IPR027417,UniProtKB/TrEMBL:A1K605,NCBI_GP:CAL94260.1;Name=CAL94260.1;Note=GTP-binding protein era homolog. Binds both GDP and GTP has an intrinsic GTPase activity and is essential for cell growth (By similarity).Binds both GDP and GTP%2C has an intrinsic GTPase activity and is essential for cell growth. PTM:Autophosphorylated (By similarity). SIMILARITY:Contains 1 KH type-2 domain. TREMBL:Q8Y0I0: 59%25 identity%2C 76%25 similarity InterPro:IPR005662%3B Era. IPR005289%3B GTP-bindding_dom. IPR004044%3B KH_TYPE_2. IPR005225%3B Small_GTP Pfam: PF01926: MMR_HSR1%3B 1 TIGRFAM:sensory_box:sensory_box: PAS domain S-box mobB: molybdopterin-guanine dinucleotid No signal peptide No transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;gene=era;product=probable GTP-binding protein;protein_id=CAL94260.1;transl_table=11
AM406670.1	EMBL	gene	1804142	1804873	.	+	.	ID=gene1680;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=azo1644
AM406670.1	EMBL	CDS	1804142	1804873	.	+	0	ID=cds1642;Parent=gene1680;Dbxref=EnsemblGenomes-Gn:azo1644,EnsemblGenomes-Tr:CAL94261,GOA:A1K606,InterPro:IPR003717,InterPro:IPR012340,InterPro:IPR022572,NCBI_GP:CAL94261.1;Name=CAL94261.1;Note=DNA repair protein recO (Recombination protein O). Involved in DNA repair and recF pathway recombination (By similarity). reco: DNA repair protein RecO.%3B~High confidence in function and specificity;gbkey=CDS;gene=recO;product=DNA repair protein RecO (recombination protein O);protein_id=CAL94261.1;transl_table=11
AM406670.1	EMBL	gene	1804870	1805619	.	+	.	ID=gene1681;Name=pdxJ;gbkey=Gene;gene=pdxJ;gene_biotype=protein_coding;locus_tag=azo1645
AM406670.1	EMBL	CDS	1804870	1805619	.	+	0	ID=cds1643;Parent=gene1681;Dbxref=EnsemblGenomes-Gn:azo1645,EnsemblGenomes-Tr:CAL94262,GOA:A1K607,InterPro:IPR004569,InterPro:IPR013785,NCBI_GP:CAL94262.1;Name=CAL94262.1;Note=Pyridoxal phosphate biosynthetic protein pdxJ (PNP synthase). Catalyzes the condensation of 1-deoxy-D-xylulose-5- phosphate (DXP) and 1-amino-3-(phosphohydroxy)propan-2-one to form pyridoxine 5-phosphate (PNP) (By similarity). pdxJ: pyridoxal phosphate biosynthetic%3B~High confidence in function and specificity;gbkey=CDS;gene=pdxJ;product=pyridoxine biosynthesis;protein_id=CAL94262.1;transl_table=11
AM406670.1	EMBL	gene	1805634	1806011	.	+	.	ID=gene1682;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;locus_tag=azo1646
AM406670.1	EMBL	CDS	1805634	1806011	.	+	0	ID=cds1644;Parent=gene1682;Dbxref=EnsemblGenomes-Gn:azo1646,EnsemblGenomes-Tr:CAL94263,GOA:A1K608,InterPro:IPR002582,InterPro:IPR004568,InterPro:IPR008278,NCBI_GP:CAL94263.1;Name=CAL94263.1;Note=Holo-[acyl-carrier-protein] synthase%2C 50%25 Identity to TrEMBL%3BQ7NWB8%2C Q820I1. SProt%3BQ9KPB6(49%25). Has PF01648%2C4'-phosphopantetheinyl transferase superfamily%3B IPR008278 4-PPT_transf%3B Members of this family transfers the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of PP-binding. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP. This superfamily consists of two subtypes: The ACPS type such as P24224 and the Sfp type such as P39135. The structure of the Sfp type is known which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion.;gbkey=CDS;gene=acpS;product=holo-[acyl-carrier-protein] synthase;protein_id=CAL94263.1;transl_table=11
AM406670.1	EMBL	gene	1806008	1807141	.	+	.	ID=gene1683;Name=nagZ2;gbkey=Gene;gene=nagZ2;gene_biotype=protein_coding;locus_tag=azo1647
AM406670.1	EMBL	CDS	1806008	1807141	.	+	0	ID=cds1645;Parent=gene1683;Dbxref=EnsemblGenomes-Gn:azo1647,EnsemblGenomes-Tr:CAL94264,GOA:A1K609,InterPro:IPR001764,InterPro:IPR017853,InterPro:IPR019800,InterPro:IPR022956,UniProtKB/TrEMBL:A1K609,NCBI_GP:CAL94264.1;Name=CAL94264.1;Note=Beta-hexosaminidase (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase). Cleaves GlcNAc linked beta-14 to MurNAc tripeptides.Involved in the cell wall synthesis%3B murein tripeptide recycling pathway. 49%25 Glyco_hydro_3N. Glycoside hydrolase family 3 N terminal. Pfam: PF00933%3B Glyco_hydro_3%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=nagZ2;product=putative beta-hexosaminidase;protein_id=CAL94264.1;transl_table=11
AM406670.1	EMBL	gene	1807351	1809171	.	+	.	ID=gene1684;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=azo1648
AM406670.1	EMBL	CDS	1807351	1809171	.	+	0	ID=cds1646;Parent=gene1684;Dbxref=EnsemblGenomes-Gn:azo1648,EnsemblGenomes-Tr:CAL94265,GOA:A1K610,InterPro:IPR000305,InterPro:IPR001162,InterPro:IPR001943,InterPro:IPR003583,InterPro:IPR004791,InterPro:IPR010994,InterPro:IPR027299,UniProtKB/TrEMBL:A1K610,NCBI_GP:CAL94265.1;Name=CAL94265.1;Note=UvrABC system protein C (UvrC protein) . The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5 and 3 sides of the lesion. The N-terminal half is responsible for the 3 incision and the C-terminal half is responsible for the 5 incision (By similarity). InterPro: Excinuclease ABC C subunit. uvrC: excinuclease ABC C subunit.%3B~High confidence in function and specificity;gbkey=CDS;gene=uvrC;product=excinuclease ABC subunit C;protein_id=CAL94265.1;transl_table=11
AM406670.1	EMBL	gene	1809267	1809839	.	+	.	ID=gene1685;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=azo1649
AM406670.1	EMBL	CDS	1809267	1809839	.	+	0	ID=cds1647;Parent=gene1685;Dbxref=EnsemblGenomes-Gn:azo1649,EnsemblGenomes-Tr:CAL94266,GOA:A1K611,InterPro:IPR000462,InterPro:IPR004570,UniProtKB/TrEMBL:A1K611,NCBI_GP:CAL94266.1;Name=CAL94266.1;Note=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (PGP synthase). It catalyses the conversion of CDP-diacylglycerol and glycerol-3-phosphate to CMP and 3-(3-phosphatidyl)-glycerol 1-phosphate in the commited step to the synthesis of acidic phospholipids. It is an integral membrane protein. A number of related enzymes are quite similar in both sequence and catalytic activity%2C including Saccharamyces cerevisiae YDL142c%2C now known to be a cardiolipin synthase. Entry name :-SWISSPROT:PGSA_ECOLI Prim. accession # P06978 Identities %3D 50%25 InterPro IPR000462%3B CDP-OH_P_trans. IPR004570%3B PgsA. Pfam PF01066%3B CDP-OH_P_transf%3B 1. Number of predicted TMHs: 5 Prediction: Non-secretory protein Signal peptide probability: 0.109%3B~Family membership;gbkey=CDS;gene=pgsA;product=probable CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=CAL94266.1;transl_table=11
AM406670.1	EMBL	gene	1809899	1809974	.	+	.	ID=gene1686;Name=tRNA-Gly;gbkey=Gene;gene=tRNA-Gly;gene_biotype=tRNA;locus_tag=azo_tRNA_0033
AM406670.1	EMBL	tRNA	1809899	1809974	.	+	.	ID=rna38;Parent=gene1686;anticodon=(pos:1809932..1809934);gbkey=tRNA;gene=tRNA-Gly;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Gly
AM406670.1	EMBL	exon	1809899	1809974	.	+	.	ID=id39;Parent=rna38;anticodon=(pos:1809932..1809934);gbkey=tRNA;gene=tRNA-Gly;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Gly
AM406670.1	EMBL	gene	1810049	1810122	.	+	.	ID=gene1687;Name=tRNA-Cys;gbkey=Gene;gene=tRNA-Cys;gene_biotype=tRNA;locus_tag=azo_tRNA_0034
AM406670.1	EMBL	tRNA	1810049	1810122	.	+	.	ID=rna39;Parent=gene1687;anticodon=(pos:1810081..1810083);gbkey=tRNA;gene=tRNA-Cys;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Cys
AM406670.1	EMBL	exon	1810049	1810122	.	+	.	ID=id40;Parent=rna39;anticodon=(pos:1810081..1810083);gbkey=tRNA;gene=tRNA-Cys;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Cys
AM406670.1	EMBL	gene	1810132	1810207	.	+	.	ID=gene1688;Name=tRNA-Gly;gbkey=Gene;gene=tRNA-Gly;gene_biotype=tRNA;locus_tag=azo_tRNA_0035
AM406670.1	EMBL	tRNA	1810132	1810207	.	+	.	ID=rna40;Parent=gene1688;anticodon=(pos:1810165..1810167);gbkey=tRNA;gene=tRNA-Gly;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Gly
AM406670.1	EMBL	exon	1810132	1810207	.	+	.	ID=id41;Parent=rna40;anticodon=(pos:1810165..1810167);gbkey=tRNA;gene=tRNA-Gly;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Gly
AM406670.1	EMBL	gene	1810266	1811441	.	+	.	ID=gene1689;Name=azo1650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1650
AM406670.1	EMBL	CDS	1810266	1811441	.	+	0	ID=cds1648;Parent=gene1689;Dbxref=EnsemblGenomes-Gn:azo1650,EnsemblGenomes-Tr:CAL94267,GOA:A1K612,InterPro:IPR002591,InterPro:IPR017849,InterPro:IPR017850,UniProtKB/TrEMBL:A1K612,NCBI_GP:CAL94267.1;Name=CAL94267.1;Note=Probable Serine--pyruvate aminotransferase mitochondrial precursor (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT). TREMBL:Q7P1E0:36%25 identity%2C 45%25 similarity This family consists of phosphodiesterases%2C including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD%2C deoxynucleotides and nucleotide sugars InterPro:IPR002591%3B Phosphodiest. Pfam:PF01663%3B Phosphodiest%3B bcpB: phosphonopyruvate decarboxylase-rel No transmembrane helices%3B~Function unclear;gbkey=CDS;product=putative phosphodiesterase protein;protein_id=CAL94267.1;transl_table=11
AM406670.1	EMBL	gene	1811528	1811716	.	+	.	ID=gene1690;Name=azo1651;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1651
AM406670.1	EMBL	CDS	1811528	1811716	.	+	0	ID=cds1649;Parent=gene1690;Dbxref=EnsemblGenomes-Gn:azo1651,EnsemblGenomes-Tr:CAL94268,UniProtKB/TrEMBL:A1K613,NCBI_GP:CAL94268.1;Name=CAL94268.1;Note=Hypothetical protein. No homologs in the database. Has No domains%2C repeats%2C motifs or features.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94268.1;transl_table=11
AM406670.1	EMBL	gene	1811729	1812199	.	-	.	ID=gene1691;Name=azo1652;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1652
AM406670.1	EMBL	CDS	1811729	1812199	.	-	0	ID=cds1650;Parent=gene1691;Dbxref=EnsemblGenomes-Gn:azo1652,EnsemblGenomes-Tr:CAL94269,InterPro:IPR009562,UniProtKB/TrEMBL:A1K614,NCBI_GP:CAL94269.1;Name=CAL94269.1;Note=Conserved hypothetical protein. Homology to RS03611 of R.solanacearum of 40%25 (trembl:Q8XXR7). Has PF06676(IPR009562):Protein of unknown function (DUF1178)%3BThis family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94269.1;transl_table=11
AM406670.1	EMBL	gene	1812221	1812305	.	-	.	ID=gene1692;Name=tRNA-Leu;gbkey=Gene;gene=tRNA-Leu;gene_biotype=tRNA;locus_tag=azo_tRNA_0036
AM406670.1	EMBL	tRNA	1812221	1812305	.	-	.	ID=rna41;Parent=gene1692;anticodon=(pos:complement(1812269..1812271));gbkey=tRNA;gene=tRNA-Leu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Leu
AM406670.1	EMBL	exon	1812221	1812305	.	-	.	ID=id42;Parent=rna41;anticodon=(pos:complement(1812269..1812271));gbkey=tRNA;gene=tRNA-Leu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Leu
AM406670.1	EMBL	gene	1812617	1815325	.	+	.	ID=gene1693;Name=azo1653;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1653
AM406670.1	EMBL	CDS	1812617	1815325	.	+	0	ID=cds1651;Parent=gene1693;Dbxref=EnsemblGenomes-Gn:azo1653,EnsemblGenomes-Tr:CAL94270,InterPro:IPR005546,InterPro:IPR011050,InterPro:IPR013425,UniProtKB/TrEMBL:A1K615,NCBI_GP:CAL94270.1;Name=CAL94270.1;Note=Putative Autotransporter%2C30%25 identity to TrEMBL%3BQ87UU2. Weak homology with hits in the DB. Signal Peptide present. No TMH reported present. Has PF03797%3BAutotransporter beta-domain%3BThe protein component that mediates secretion through the outer membrane is contained within the secreted protein itself%2C hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins%2C in others a different protease is used and in some cases no cleavage occurs.;gbkey=CDS;product=autotransporter;protein_id=CAL94270.1;transl_table=11
AM406670.1	EMBL	gene	1815335	1815595	.	-	.	ID=gene1694;Name=azo1654;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1654
AM406670.1	EMBL	CDS	1815335	1815595	.	-	0	ID=cds1652;Parent=gene1694;Dbxref=EnsemblGenomes-Gn:azo1654,EnsemblGenomes-Tr:CAL94271,GOA:A1K616,InterPro:IPR005527,NCBI_GP:CAL94271.1;Name=CAL94271.1;Note=Homology to cell division topological specificity factor minE.%3B~Family membership;gbkey=CDS;product=putative cell division topological specificity factor;protein_id=CAL94271.1;transl_table=11
AM406670.1	EMBL	gene	1815597	1816409	.	-	.	ID=gene1695;Name=minD;gbkey=Gene;gene=minD;gene_biotype=protein_coding;locus_tag=azo1655
AM406670.1	EMBL	CDS	1815597	1816409	.	-	0	ID=cds1653;Parent=gene1695;Dbxref=EnsemblGenomes-Gn:azo1655,EnsemblGenomes-Tr:CAL94272,GOA:A1K617,InterPro:IPR002586,InterPro:IPR010223,InterPro:IPR025501,InterPro:IPR027417,UniProtKB/TrEMBL:A1K617,NCBI_GP:CAL94272.1;Name=CAL94272.1;Note=Septum site-determining protein minD (Cell division inhibitor minD).%3B~High confidence in function and specificity;gbkey=CDS;gene=minD;product=putative septum site-determining protein;protein_id=CAL94272.1;transl_table=11
AM406670.1	EMBL	gene	1816439	1817209	.	-	.	ID=gene1696;Name=azo1656;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1656
AM406670.1	EMBL	CDS	1816439	1817209	.	-	0	ID=cds1654;Parent=gene1696;Dbxref=EnsemblGenomes-Gn:azo1656,EnsemblGenomes-Tr:CAL94273,GOA:A1K618,InterPro:IPR005526,InterPro:IPR007874,InterPro:IPR013033,InterPro:IPR016098,UniProtKB/TrEMBL:A1K618,NCBI_GP:CAL94273.1;Name=CAL94273.1;Note=Probable septum site-determining protein minC.%3B~Family membership;gbkey=CDS;product=putative cell division inhibitor;protein_id=CAL94273.1;transl_table=11
AM406670.1	EMBL	gene	1817301	1818167	.	-	.	ID=gene1697;Name=hslO;gbkey=Gene;gene=hslO;gene_biotype=protein_coding;locus_tag=azo1657
AM406670.1	EMBL	CDS	1817301	1818167	.	-	0	ID=cds1655;Parent=gene1697;Dbxref=EnsemblGenomes-Gn:azo1657,EnsemblGenomes-Tr:CAL94274,GOA:A1K619,InterPro:IPR000397,InterPro:IPR016153,InterPro:IPR016154,InterPro:IPR023212,UniProtKB/TrEMBL:A1K619,NCBI_GP:CAL94274.1;Name=CAL94274.1;Note=Putative 33 kDa chaperonin. Homology to hslO of E. coli of 32%25 (sprot|HSLO_ECOLI) Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress (By similarity). InterPro: Hsp33 protein (IPR000397) Pfam: Hsp33 protein no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=hslO;product=putative 33 kDa chaperonin;protein_id=CAL94274.1;transl_table=11
AM406670.1	EMBL	gene	1818164	1818496	.	-	.	ID=gene1698;Name=azo1658;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1658
AM406670.1	EMBL	CDS	1818164	1818496	.	-	0	ID=cds1656;Parent=gene1698;Dbxref=EnsemblGenomes-Gn:azo1658,EnsemblGenomes-Tr:CAL94275,GOA:A1K620,InterPro:IPR006504,InterPro:IPR006660,InterPro:IPR012336,UniProtKB/TrEMBL:A1K620,NCBI_GP:CAL94275.1;Name=CAL94275.1;Note=45%25 Arsen_reductase.IPR006504%3B Cons_hypoth_ArsC. Pfam:PF03960%3B ArsC%3B 1. ArsC:arsenate reductase%2C catalyzes the reduction of arsenate to arsenite. Probably involved in arsenic resistance.%3B~High confidence in function and specificity;gbkey=CDS;product=putative arsenate reductase protein;protein_id=CAL94275.1;transl_table=11
AM406670.1	EMBL	gene	1818545	1820866	.	-	.	ID=gene1699;Name=tex;gbkey=Gene;gene=tex;gene_biotype=protein_coding;locus_tag=azo1659
AM406670.1	EMBL	CDS	1818545	1820866	.	-	0	ID=cds1657;Parent=gene1699;Dbxref=EnsemblGenomes-Gn:azo1659,EnsemblGenomes-Tr:CAL94276,GOA:A1K621,InterPro:IPR003029,InterPro:IPR003583,InterPro:IPR006641,InterPro:IPR010994,InterPro:IPR012337,InterPro:IPR012340,InterPro:IPR018974,InterPro:IPR022967,InterPro:IPR023097,InterPro:IPR023319,InterPro:IPR023323,UniProtKB/TrEMBL:A1K621,NCBI_GP:CAL94276.1;Name=CAL94276.1;Note=Transcription accessory protein (S1-domain containing RNA binding protein)%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=tex;product=transcription accessory protein;protein_id=CAL94276.1;transl_table=11
AM406670.1	EMBL	gene	1820983	1821834	.	-	.	ID=gene1700;Name=azo1660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1660
AM406670.1	EMBL	CDS	1820983	1821834	.	-	0	ID=cds1658;Parent=gene1700;Dbxref=EnsemblGenomes-Gn:azo1660,EnsemblGenomes-Tr:CAL94277,GOA:A1K622,InterPro:IPR008183,InterPro:IPR011013,InterPro:IPR014718,InterPro:IPR025532,UniProtKB/TrEMBL:A1K622,NCBI_GP:CAL94277.1;Name=CAL94277.1;Note=Possible aldose 1-epimerase.Aldose 1-epimerase (mutarotase)%2C responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. InterPro:IPR008183%3B Ald1_epimerase. Pfam:PF01263%3B Aldose_epim%3B 1.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94277.1;transl_table=11
AM406670.1	EMBL	gene	1821839	1824526	.	-	.	ID=gene1701;Name=azo1661;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1661
AM406670.1	EMBL	CDS	1821839	1824526	.	-	0	ID=cds1659;Parent=gene1701;Dbxref=EnsemblGenomes-Gn:azo1661,EnsemblGenomes-Tr:CAL94278,GOA:A1K623,InterPro:IPR000182,InterPro:IPR003781,InterPro:IPR011761,InterPro:IPR016040,InterPro:IPR016102,InterPro:IPR016181,UniProtKB/TrEMBL:A1K623,NCBI_GP:CAL94278.1;Name=CAL94278.1;Note=Conserved hypothetical protein. Homology to cv3676 of C. violaceum of 47%25 (trembl|Q7NRV4). InterPro: DUF184 (IPR003781). Pfam: CoA binding domain%3B Acetyltransferase (GNAT) family. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94278.1;transl_table=11
AM406670.1	EMBL	gene	1824697	1826376	.	-	.	ID=gene1702;Name=azo1662;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1662
AM406670.1	EMBL	CDS	1824697	1826376	.	-	0	ID=cds1660;Parent=gene1702;Dbxref=EnsemblGenomes-Gn:azo1662,EnsemblGenomes-Tr:CAL94279,GOA:A1K624,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR013656,InterPro:IPR013767,UniProtKB/TrEMBL:A1K624,NCBI_GP:CAL94279.1;Name=CAL94279.1;Note=Putative two-component system sensor protein%2C 3 Signal P reporting signal peptide. TMHMM reporting 1 transmembrane helices.%3B~Function unclear;gbkey=CDS;product=putative two-component system sensor protein;protein_id=CAL94279.1;transl_table=11
AM406670.1	EMBL	gene	1826675	1827214	.	+	.	ID=gene1703;Name=tehB;gbkey=Gene;gene=tehB;gene_biotype=protein_coding;locus_tag=azo1663
AM406670.1	EMBL	CDS	1826675	1827214	.	+	0	ID=cds1661;Parent=gene1703;Dbxref=EnsemblGenomes-Gn:azo1663,EnsemblGenomes-Tr:CAL94280,GOA:A1K625,InterPro:IPR029063,UniProtKB/TrEMBL:A1K625,NCBI_GP:CAL94280.1;Name=CAL94280.1;Note=TREMBL:Q8EI75-35%25 identity%2C 54%25 similarity TREMBLnew:AAS81097 InterPro: SAM (and some other nucleotide) binding motif tehB: tellurite resistance protein TehB. Toxin production and resistance responsible for potassium tellurite resistance when present in high copy number%2C probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. otherwise%2C phenotypically silent.cytoplasmic (potential). was originally (ref.1) thought to be plasmid encoded.InterPro IPR000051%3B SAM_bind. IPR004537%3B TehB. Pfam PF03848%3B TehB%3B 1. TIGRFAMs:TIGR00477%3B tehB%3B 1. INDUCES AGGLUTINATION OF NEURAMINIDASE-TREATED ERYTHROCYTES.%3B~Conserved hypothetical protein;gbkey=CDS;gene=tehB;product=putative tellurite resistance protein;protein_id=CAL94280.1;transl_table=11
AM406670.1	EMBL	gene	1827218	1828321	.	-	.	ID=gene1704;Name=azo1664;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1664
AM406670.1	EMBL	CDS	1827218	1828321	.	-	0	ID=cds1662;Parent=gene1704;Dbxref=EnsemblGenomes-Gn:azo1664,EnsemblGenomes-Tr:CAL94281,GOA:A1K626,InterPro:IPR001307,InterPro:IPR001763,InterPro:IPR017582,UniProtKB/TrEMBL:A1K626,NCBI_GP:CAL94281.1;Name=CAL94281.1;Note=Conserved hypothetical protein. Homology to gsu1190 of G. sulfurreducens of 33%25 (tremblnew|AAR34566). InterPro: Rhodanese/cdc25 fold (IPR001763). Pfam: Rhodanese-like domain. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94281.1;transl_table=11
AM406670.1	EMBL	gene	1828320	1829360	.	+	.	ID=gene1705;Name=azo1665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1665
AM406670.1	EMBL	CDS	1828320	1829360	.	+	0	ID=cds1663;Parent=gene1705;Dbxref=EnsemblGenomes-Gn:azo1665,EnsemblGenomes-Tr:CAL94282,GOA:A1K627,InterPro:IPR000728,InterPro:IPR004536,InterPro:IPR010918,InterPro:IPR016188,InterPro:IPR023061,UniProtKB/TrEMBL:A1K627,NCBI_GP:CAL94282.1;Name=CAL94282.1;Note=Region start changed from 1828399 to 1828321 (78 bases);gbkey=CDS;product=probable selenide%2C water dikinase;protein_id=CAL94282.1;transl_table=11
AM406670.1	EMBL	gene	1829378	1829989	.	-	.	ID=gene1706;Name=tesA1;gbkey=Gene;gene=tesA1;gene_biotype=protein_coding;locus_tag=azo1666
AM406670.1	EMBL	CDS	1829378	1829989	.	-	0	ID=cds1664;Parent=gene1706;Dbxref=EnsemblGenomes-Gn:azo1666,EnsemblGenomes-Tr:CAL94283,GOA:A1K628,InterPro:IPR013831,UniProtKB/TrEMBL:A1K628,NCBI_GP:CAL94283.1;Name=CAL94283.1;Note=Probable acyl-CoA thioesterase. Homology to tesA of E. coli of 42%25 (sprot|TESA_ECOLI) Hydrolyzes long chain acyl thioesters (c12-c18): 2-lysophosphatidylcholine + h(2)o %3D glycerophosphocholine + a fatty acid anion. InterPro: GDSL lipolytic enzyme (IPR001087) Pfam: Lipase/Acylhydrolase with GDSL-like motif signal peptide no TMH%3B~Family membership;gbkey=CDS;gene=tesA1;product=probable acyl-CoA thioesterase;protein_id=CAL94283.1;transl_table=11
AM406670.1	EMBL	gene	1829973	1830689	.	+	.	ID=gene1707;Name=azo1667;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1667
AM406670.1	EMBL	CDS	1829973	1830689	.	+	0	ID=cds1665;Parent=gene1707;Dbxref=EnsemblGenomes-Gn:azo1667,EnsemblGenomes-Tr:CAL94284,GOA:A1K629,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K629,NCBI_GP:CAL94284.1;Name=CAL94284.1;Note=Similar to TREMBL:Q82UM8 (55%25 identity)%3B TREMBL:Q8XYP0 (59%25 identity)%3B TREMBL:Q7W685 (59%25 identity). Pfam (PF00005): ABC transporter.%3B~Specificity unclear;gbkey=CDS;product=putative ABC transporter ATP-binding protein;protein_id=CAL94284.1;transl_table=11
AM406670.1	EMBL	gene	1830700	1831530	.	-	.	ID=gene1708;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=azo1668
AM406670.1	EMBL	CDS	1830700	1831530	.	-	0	ID=cds1666;Parent=gene1708;Dbxref=EnsemblGenomes-Gn:azo1668,EnsemblGenomes-Tr:CAL94285,GOA:A1K630,InterPro:IPR001757,InterPro:IPR004469,InterPro:IPR006383,InterPro:IPR023190,InterPro:IPR023214,InterPro:IPR025138,UniProtKB/TrEMBL:A1K630,NCBI_GP:CAL94285.1;Name=CAL94285.1;Note=Phosphoserine phosphatase%2C SerB%2C catalyzes the final step in serine biosynthesis in E. coli. It hydrolyses the phosphate group from phosphoserine to yield serine. Similar to trembl|Q82X56 (54%25) and to sprot|SERB_ECOLI (37%25). TIGRFAM: phosphoserine phosphatase SerB Pfam (PF00702): haloacid dehalogenase-like hydrolase%3B~Specificity unclear;gbkey=CDS;gene=serB;product=probable phosphoserine phosphatase;protein_id=CAL94285.1;transl_table=11
AM406670.1	EMBL	gene	1831527	1832603	.	-	.	ID=gene1709;Name=aroF;gbkey=Gene;gene=aroF;gene_biotype=protein_coding;locus_tag=azo1669
AM406670.1	EMBL	CDS	1831527	1832603	.	-	0	ID=cds1667;Parent=gene1709;Dbxref=EnsemblGenomes-Gn:azo1669,EnsemblGenomes-Tr:CAL94286,GOA:A1K631,InterPro:IPR006218,InterPro:IPR006219,InterPro:IPR013785,UniProtKB/TrEMBL:A1K631,NCBI_GP:CAL94286.1;Name=CAL94286.1;Note=Probable phospho-2-dehydro-3-deoxyheptonate aldolase. Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP). InterPro: DAHP synthetase class I (IPR006218) Pfam: DAHP synthetase I family Tigrfam: aroFGH: phospho-2-dehydro-3-deoxyheptonat no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=aroF;product=probable phospho-2-dehydro-3-deoxyheptonate aldolase;protein_id=CAL94286.1;transl_table=11
AM406670.1	EMBL	gene	1832786	1833313	.	+	.	ID=gene1710;Name=azo1670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1670
AM406670.1	EMBL	CDS	1832786	1833313	.	+	0	ID=cds1668;Parent=gene1710;Dbxref=EnsemblGenomes-Gn:azo1670,EnsemblGenomes-Tr:CAL94287,GOA:A1K632,InterPro:IPR000572,UniProtKB/TrEMBL:A1K632,NCBI_GP:CAL94287.1;Name=CAL94287.1;Note=Conserved hypothetical secreted protein. Homology to PA2869 of P.aeruginosa of 32%25 (trembl:Q9HZX7). No domains predicted. Signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94287.1;transl_table=11
AM406670.1	EMBL	gene	1833366	1835738	.	+	.	ID=gene1711;Name=azo1671;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1671
AM406670.1	EMBL	CDS	1833366	1835738	.	+	0	ID=cds1669;Parent=gene1711;Dbxref=EnsemblGenomes-Gn:azo1671,EnsemblGenomes-Tr:CAL94288,GOA:A1K633,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR013655,InterPro:IPR029787,UniProtKB/TrEMBL:A1K633,NCBI_GP:CAL94288.1;Name=CAL94288.1;Note=GGDEF/EAL/PAS/PAC-domain containing protein;gbkey=CDS;product=GGDEF/EAL/PAS/PAC-domain containing protein;protein_id=CAL94288.1;transl_table=11
AM406670.1	EMBL	gene	1835746	1836711	.	-	.	ID=gene1712;Name=corA;gbkey=Gene;gene=corA;gene_biotype=protein_coding;locus_tag=azo1672
AM406670.1	EMBL	CDS	1835746	1836711	.	-	0	ID=cds1670;Parent=gene1712;Dbxref=EnsemblGenomes-Gn:azo1672,EnsemblGenomes-Tr:CAL94289,GOA:A1K634,InterPro:IPR002523,InterPro:IPR004488,UniProtKB/TrEMBL:A1K634,NCBI_GP:CAL94289.1;Name=CAL94289.1;Note=Magnesium and cobalt transport protein CorA. Plays a role in the transport of Magnesium and Cobalt ions. Homolog to E.coli and S.typhimurium%2C magnesium and cobalt proteins. InterPro:IPR002523%3B Mg2+_transptCorA. Pfam: PF01544%3B CorA%3B 1. THM:2%3B~Function unclear;gbkey=CDS;gene=corA;product=putative magnesium and cobalt transport protein;protein_id=CAL94289.1;transl_table=11
AM406670.1	EMBL	gene	1836734	1840186	.	-	.	ID=gene1713;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=azo1673
AM406670.1	EMBL	CDS	1836734	1840186	.	-	0	ID=cds1671;Parent=gene1713;Dbxref=EnsemblGenomes-Gn:azo1673,EnsemblGenomes-Tr:CAL94290,GOA:A1K635,InterPro:IPR001650,InterPro:IPR003711,InterPro:IPR004576,InterPro:IPR005118,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:A1K635,NCBI_GP:CAL94290.1;Name=CAL94290.1;Note=Transcription-repair coupling factor (TRCF). NECESSARY FOR STRAND-SPECIFIC REPAIR. A LESION IN THE TEMPLATE STRAND BLOCKS THE RNA POLYMERASE COMPLEX (RNAP). THE RNAP-DNA-RNA COMPLEX IS SPECIFICALLY RECOGNIZED BY TRCF WHICH RELEASES RNAP AND THE TRUNCATED TRANSCRIPT%3B THE TCRF MAY REPLACE RNAP AT THE LESION SITE AND THEN RECRUIT THE UVRA/B/C REPAIR SYSTEM. mfd: transcription-repair coupling fa%3B~High confidence in function and specificity;gbkey=CDS;gene=mfd;product=transcription-repair coupling factor;protein_id=CAL94290.1;transl_table=11
AM406670.1	EMBL	gene	1840295	1840948	.	-	.	ID=gene1714;Name=azo1674;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1674
AM406670.1	EMBL	CDS	1840295	1840948	.	-	0	ID=cds1672;Parent=gene1714;Dbxref=EnsemblGenomes-Gn:azo1674,EnsemblGenomes-Tr:CAL94291,InterPro:IPR021973,UniProtKB/TrEMBL:A1K636,NCBI_GP:CAL94291.1;Name=CAL94291.1;Note=Conserved hypothetical protein. Homology to CV1155 of Chromobacterium violaceum of 35%25 (gnl|keqq|cvi:CV1155(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94291.1;transl_table=11
AM406670.1	EMBL	gene	1841025	1841771	.	-	.	ID=gene1715;Name=azo1675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1675
AM406670.1	EMBL	CDS	1841025	1841771	.	-	0	ID=cds1673;Parent=gene1715;Dbxref=EnsemblGenomes-Gn:azo1675,EnsemblGenomes-Tr:CAL94292,GOA:A1K637,InterPro:IPR029058,InterPro:IPR029059,UniProtKB/TrEMBL:A1K637,NCBI_GP:CAL94292.1;Name=CAL94292.1;Note=Probable DNA fragmentation factor 40 kDa subunit (EC 3.-.-.-) (DFF-40) (Caspase-activated deoxyribonuclease) (Caspase-activated DNase) (CAD). Members of PRT family are catalytic and regulatory proteins involved in nucleotide synthesis and salvage. The name PRT comes from phosphoribosyltransferase enzymes%2Cwhich carry out phosphoryl transfer reactions on PRPP%2C an activated form of ribose-5-phosphate. This family includes a range of diverse phosphoribosyl transferase enzymes TREMBL:Q7WXA5: 29%25 identity%2C 47%25 similarity InterPro:IPR000836%3B PRtransferase. Pfam: PF00156%3B Pribosyltran%3B 1. acid_CoA_mut_C: methylmalonyl-CoA muta Non-secretory protein with low probability of signal peptide (0.001) No transmembrane helices%3B~Function unclear;gbkey=CDS;product=putative phosphoribosyltransferase;protein_id=CAL94292.1;transl_table=11
AM406670.1	EMBL	gene	1841802	1842875	.	-	.	ID=gene1716;Name=pflA;gbkey=Gene;gene=pflA;gene_biotype=protein_coding;locus_tag=azo1676
AM406670.1	EMBL	CDS	1841802	1842875	.	-	0	ID=cds1674;Parent=gene1716;Dbxref=EnsemblGenomes-Gn:azo1676,EnsemblGenomes-Tr:CAL94293,GOA:A1K638,InterPro:IPR007197,InterPro:IPR016431,InterPro:IPR027596,UniProtKB/TrEMBL:A1K638,NCBI_GP:CAL94293.1;Name=CAL94293.1;Note=conserved hypothetical pyruvat formate-lyase activiating enzyme. Homology to pflA of M. tuberculosis of 64%25 (trembl|P95188). no domains predicted no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=pflA;product=conserved hypothetical pyruvate formate-lyase activating enzyme;protein_id=CAL94293.1;transl_table=11
AM406670.1	EMBL	gene	1842957	1843337	.	-	.	ID=gene1717;Name=azo1677;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1677
AM406670.1	EMBL	CDS	1842957	1843337	.	-	0	ID=cds1675;Parent=gene1717;Dbxref=EnsemblGenomes-Gn:azo1677,EnsemblGenomes-Tr:CAL94294,GOA:A1K639,InterPro:IPR024899,NCBI_GP:CAL94294.1;Name=CAL94294.1;Note=Conserved hypothetical protein. Homology to Daro03002649 of Dechloromonas aromatica of 39%25 (gi|41723559|ref|ZP_00150469.1|(NBCI ENTREZ)). No domains predicted. No TMH. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94294.1;transl_table=11
AM406670.1	EMBL	gene	1843392	1844072	.	-	.	ID=gene1718;Name=azo1678;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1678
AM406670.1	EMBL	CDS	1843392	1844072	.	-	0	ID=cds1676;Parent=gene1718;Dbxref=EnsemblGenomes-Gn:azo1678,EnsemblGenomes-Tr:CAL94295,GOA:A1K640,InterPro:IPR000595,InterPro:IPR001808,InterPro:IPR011991,InterPro:IPR012318,InterPro:IPR014710,InterPro:IPR018490,UniProtKB/TrEMBL:A1K640,NCBI_GP:CAL94295.1;Name=CAL94295.1;Note=Putative cyclic nucleotide-binding protein%2C%3B~Specificity unclear;gbkey=CDS;product=putative cyclic nucleotide-binding protein;protein_id=CAL94295.1;transl_table=11
AM406670.1	EMBL	gene	1844113	1844679	.	-	.	ID=gene1719;Name=azo1679;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1679
AM406670.1	EMBL	CDS	1844113	1844679	.	-	0	ID=cds1677;Parent=gene1719;Dbxref=EnsemblGenomes-Gn:azo1679,EnsemblGenomes-Tr:CAL94296,InterPro:IPR002733,InterPro:IPR023473,InterPro:IPR027485,InterPro:IPR027623,UniProtKB/TrEMBL:A1K641,NCBI_GP:CAL94296.1;Name=CAL94296.1;Note=Hypothetical protein%2C 38%25 identity to SwissProt%3BO26945 Has PF01871%3BAMMECR1%3B(IPR002733%2C DUF 51)This family consists of several AMMECR1 as well as several uncharacterised proteins. The contiguous gene deletion syndrome AMME is characterised by Alport syndrome%2C midface hypoplasia%2C mental retardation and elliptocytosis and is caused by a deletion in Xq22.3%2Ccomprising several genes including COL4A5%2C FACL4 and AMMECR1. This family contains sequences from several eukaryotic species as well as archaebacteria and it has been suggested that the AMMECR1 protein may have a basic cellular function%2C potentially in either the transcription%2C replication%2C repair or translation machinery.%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94296.1;transl_table=11
AM406670.1	EMBL	gene	1844660	1845484	.	-	.	ID=gene1720;Name=azo1680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1680
AM406670.1	EMBL	CDS	1844660	1845484	.	-	0	ID=cds1678;Parent=gene1720;Dbxref=EnsemblGenomes-Gn:azo1680,EnsemblGenomes-Tr:CAL94297,InterPro:IPR002737,UniProtKB/TrEMBL:A1K642,NCBI_GP:CAL94297.1;Name=CAL94297.1;Note=Hypothetical UPF0103 protein ST2062. This gene is conserved in several species ranging from Caenorhabditis elegans and yeast to plants and micro-organisms although no function has yet been ascribed to the other proteins in this family. TREMBL:Q843N3: 38%25 identity%2C52%25 similarity InterPro:IPR002733%3B DUF51. IPR002737%3B DUF52. Pfam: PF01871%3B AMMECR1%3B 1. PF01875%3B UPF0103 Signal peptide present No transmembrane helices holB: DNA polymerase III delta prime sub%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94297.1;transl_table=11
AM406670.1	EMBL	gene	1845532	1846800	.	-	.	ID=gene1721;Name=azo1681;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1681
AM406670.1	EMBL	CDS	1845532	1846800	.	-	0	ID=cds1679;Parent=gene1721;Dbxref=EnsemblGenomes-Gn:azo1681,EnsemblGenomes-Tr:CAL94298,GOA:A1K643,InterPro:IPR003416,InterPro:IPR025105,UniProtKB/TrEMBL:A1K643,NCBI_GP:CAL94298.1;Name=CAL94298.1;Note=Conserved hypothetical membrane protein. TrEMBL%3B Q82Y76(48%25 identity). TMHMM2 reporting 14 TMH's present. Signal Peptide not present. Has PF02308%3BMgtC family%3B(IPR003416 MgtCSapB_transpt)The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known%2C but it is thought that MgtC may act as an accessory protein for MgtB%2C thus mediating magnesium influx into the cytosol. Also included in this family are the Bacillus subtilis SapB protein and several hypothetical proteins. Has PF04093 rod shape-determining protein MreD%3BIPR007227%3B MreD (murein formation D) is involved in the rod shape determination in E. coli%2C and more generally in cell shape determination of bacteria whether or not they are rod-shaped.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94298.1;transl_table=11
AM406670.1	EMBL	gene	1846917	1847627	.	+	.	ID=gene1722;Name=azo1682;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1682
AM406670.1	EMBL	CDS	1846917	1847627	.	+	0	ID=cds1680;Parent=gene1722;Dbxref=EnsemblGenomes-Gn:azo1682,EnsemblGenomes-Tr:CAL94299,GOA:A1K644,InterPro:IPR001228,InterPro:IPR018294,InterPro:IPR029044,NCBI_GP:CAL94299.1;Name=CAL94299.1;Note=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT). Catalyzes the formation of 4-diphosphocytidyl-2C-methyl- D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate (By similarity). Identities %3D 133/229 (58%25) Entry name SWISSPROT:ISPD_NITEU Prim. accession # Q82UR9 InterPro IPR008233%3B DPCME_synth. IPR001228%3B ISPD_synthase. Pfam PF01128%3B IspD%3B 1. TIGRFAMs TIGR00453%3B ispD%3B 1. Number of predicted TMHs: 0 Signal peptide probability: N0%3B~Conserved hypothetical protein;gbkey=CDS;product=probable 4-diphosphocytidyl-2C-methyl-D-erythritol synthase;protein_id=CAL94299.1;transl_table=11
AM406670.1	EMBL	gene	1847624	1848112	.	+	.	ID=gene1723;Name=ispF;gbkey=Gene;gene=ispF;gene_biotype=protein_coding;locus_tag=azo1683
AM406670.1	EMBL	CDS	1847624	1848112	.	+	0	ID=cds1681;Parent=gene1723;Dbxref=EnsemblGenomes-Gn:azo1683,EnsemblGenomes-Tr:CAL94300,GOA:A1K645,InterPro:IPR003526,InterPro:IPR020555,NCBI_GP:CAL94300.1;Name=CAL94300.1;Note=Probable 2-C-methyl-D-erythritol 24-cyclodiphosphate synthase(MECPS) MECDP-synthase). Homology to ispF of E. coli of 64%25 (sprot|ISPF_ECOLI(SRS)) Converts 4-diphosphocytidyl-2C-methyl-D-erythritol 2- phosphate into 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate and CMP. Also converts 4-diphosphocytidyl-2C-methyl-D-erythritol into 2C-methyl-D-erythritol 34-cyclophosphate and CMP (By similarity). InterPro: YgbB (IPR003526)%3B 2-c-methyl-d-erythritol 2%2C4-cyclodiphosphate synthase (IPR010925) Pfam: YgbB Tigrfam: 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ispF;product=probable 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=CAL94300.1;transl_table=11
AM406670.1	EMBL	gene	1848221	1848658	.	-	.	ID=gene1724;Name=azo1684;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1684
AM406670.1	EMBL	CDS	1848221	1848658	.	-	0	ID=cds1682;Parent=gene1724;Dbxref=EnsemblGenomes-Gn:azo1684,EnsemblGenomes-Tr:CAL94301,InterPro:IPR019291,UniProtKB/TrEMBL:A1K646,NCBI_GP:CAL94301.1;Name=CAL94301.1;Note=Conserved hypothetical protein. Homology to pc0921 of Parachlamydia_UWE25 of 34%25 (pcu:pc0921(KEGG)). No signal peptide reported to be present. No TMH reported to be present. No domains predicted.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94301.1;transl_table=11
AM406670.1	EMBL	gene	1848851	1849654	.	-	.	ID=gene1725;Name=azo1685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1685
AM406670.1	EMBL	CDS	1848851	1849654	.	-	0	ID=cds1683;Parent=gene1725;Dbxref=EnsemblGenomes-Gn:azo1685,EnsemblGenomes-Tr:CAL94302,GOA:A1K647,InterPro:IPR010384,InterPro:IPR024079,UniProtKB/TrEMBL:A1K647,NCBI_GP:CAL94302.1;Name=CAL94302.1;Note=Conserved hypothetical protein. Homology to NE0619 of Nitrosomonas europaea of 44%25 (trembl:Q82WP5). Has PF06167%2C IPR010384%3B Protein of unknown function (DUF980)%3BFamily of uncharacterised bacterial sequences. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94302.1;transl_table=11
AM406670.1	EMBL	gene	1849657	1850562	.	-	.	ID=gene1726;Name=azo1686;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1686
AM406670.1	EMBL	CDS	1849657	1850562	.	-	0	ID=cds1684;Parent=gene1726;Dbxref=EnsemblGenomes-Gn:azo1686,EnsemblGenomes-Tr:CAL94303,GOA:A1K648,InterPro:IPR000620,UniProtKB/TrEMBL:A1K648,NCBI_GP:CAL94303.1;Name=CAL94303.1;Note=Conserved hypothetical membrane protein. Homology to CV2531 of C. violaceum of 42%25 (tremble:Q7NV15) InterPro: Integral membrane protein DUF6 Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transport Pfam: Integral membrane protein DUF6 no signal peptide probable 10 TMHS%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94303.1;transl_table=11
AM406670.1	EMBL	gene	1850648	1853737	.	-	.	ID=gene1727;Name=azo1687;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1687
AM406670.1	EMBL	CDS	1850648	1853737	.	-	0	ID=cds1685;Parent=gene1727;Dbxref=EnsemblGenomes-Gn:azo1687,EnsemblGenomes-Tr:CAL94304,GOA:A1K649,InterPro:IPR001264,InterPro:IPR012338,InterPro:IPR023346,UniProtKB/TrEMBL:A1K649,NCBI_GP:CAL94304.1;Name=CAL94304.1;Note=Similar to membrane carboxypeptidases.%3B~Family membership;gbkey=CDS;product=putative exported protein;protein_id=CAL94304.1;transl_table=11
AM406670.1	EMBL	gene	1853847	1856048	.	+	.	ID=gene1728;Name=relA;gbkey=Gene;gene=relA;gene_biotype=protein_coding;locus_tag=azo1688
AM406670.1	EMBL	CDS	1853847	1856048	.	+	0	ID=cds1686;Parent=gene1728;Dbxref=EnsemblGenomes-Gn:azo1688,EnsemblGenomes-Tr:CAL94305,GOA:A1K650,InterPro:IPR002912,InterPro:IPR004095,InterPro:IPR004811,InterPro:IPR007685,InterPro:IPR012675,InterPro:IPR012676,UniProtKB/TrEMBL:A1K650,NCBI_GP:CAL94305.1;Name=CAL94305.1;Note=GTP pyrophosphokinase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=relA;product=GTP diphosphokinase;protein_id=CAL94305.1;transl_table=11
AM406670.1	EMBL	gene	1856085	1858166	.	-	.	ID=gene1729;Name=ppk;gbkey=Gene;gene=ppk;gene_biotype=protein_coding;locus_tag=azo1689
AM406670.1	EMBL	CDS	1856085	1858166	.	-	0	ID=cds1687;Parent=gene1729;Dbxref=EnsemblGenomes-Gn:azo1689,EnsemblGenomes-Tr:CAL94306,GOA:A1K651,InterPro:IPR003414,InterPro:IPR024953,InterPro:IPR025198,InterPro:IPR025200,UniProtKB/TrEMBL:A1K651,NCBI_GP:CAL94306.1;Name=CAL94306.1;Note=Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid kinase) (ATP- polyphosphate phosphotransferase).Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). 54%25 PP_kinase. Pfam: PF02503%3B PP_kinase%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=ppk;product=putative polyphosphate kinase;protein_id=CAL94306.1;transl_table=11
AM406670.1	EMBL	gene	1858259	1859809	.	+	.	ID=gene1730;Name=ppx;gbkey=Gene;gene=ppx;gene_biotype=protein_coding;locus_tag=azo1690
AM406670.1	EMBL	CDS	1858259	1859809	.	+	0	ID=cds1688;Parent=gene1730;Dbxref=EnsemblGenomes-Gn:azo1690,EnsemblGenomes-Tr:CAL94307,GOA:A1K652,InterPro:IPR003695,InterPro:IPR022371,UniProtKB/TrEMBL:A1K652,NCBI_GP:CAL94307.1;Name=CAL94307.1;Note=45%25 Ppx_GppA. Pfam:PF02541%3B Ppx-GppA%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=ppx;product=putative exopolyphosphatase;protein_id=CAL94307.1;transl_table=11
AM406670.1	EMBL	gene	1859915	1861012	.	+	.	ID=gene1731;Name=azo1691;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1691
AM406670.1	EMBL	CDS	1859915	1861012	.	+	0	ID=cds1689;Parent=gene1731;Dbxref=EnsemblGenomes-Gn:azo1691,EnsemblGenomes-Tr:CAL94308,InterPro:IPR003453,UniProtKB/TrEMBL:A1K653,NCBI_GP:CAL94308.1;Name=CAL94308.1;Note=Conserved hypothetical membrane protein. Similar to TREMBL:Q8Y2M2 (43%25 identity). InterPro (IPR003453): Domain of unknown function DUF140. Pfam (PF02405): Domain of unknown function DUF140. TIGRFAM (TIGR00056): Conserved hypothetical protein. TMHMM reporting five transmembrane helices.;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94308.1;transl_table=11
AM406670.1	EMBL	gene	1861009	1861785	.	+	.	ID=gene1732;Name=azo1692;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1692
AM406670.1	EMBL	CDS	1861009	1861785	.	+	0	ID=cds1690;Parent=gene1732;Dbxref=EnsemblGenomes-Gn:azo1692,EnsemblGenomes-Tr:CAL94309,GOA:A1K654,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K654,NCBI_GP:CAL94309.1;Name=CAL94309.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q7W0L5 (51%25 identity)%3B TREMBL:Q9A5X8 (46%25 identity). InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003593): AAA ATPase. InterPro (IPR003439): ABC transporter. Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Family membership;gbkey=CDS;product=putative ABC transporter ATP-binding protein;protein_id=CAL94309.1;transl_table=11
AM406670.1	EMBL	gene	1861775	1862713	.	+	.	ID=gene1733;Name=azo1693;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1693
AM406670.1	EMBL	CDS	1861775	1862713	.	+	0	ID=cds1691;Parent=gene1733;Dbxref=EnsemblGenomes-Gn:azo1693,EnsemblGenomes-Tr:CAL94310,InterPro:IPR003399,UniProtKB/TrEMBL:A1K655,NCBI_GP:CAL94310.1;Name=CAL94310.1;Note=Conserved hypothetical secreted protein. Homology to bb0165 of B. bronchiseptica of 31%25 (TREMBL:Q7WR07). Pfam: mce related protein This family of proteins contains the mce (mycobacterial cell entry) proteins from Mycobacterium tuberculosis. The archetype (Rv0169)%2C was isolated as being necessary for colonisation of%2C and survival within%2C the macrophage. This family contains proteins of unknown function from other bacteria. Signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94310.1;transl_table=11
AM406670.1	EMBL	gene	1862703	1863353	.	+	.	ID=gene1734;Name=azo1694;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1694
AM406670.1	EMBL	CDS	1862703	1863353	.	+	0	ID=cds1692;Parent=gene1734;Dbxref=EnsemblGenomes-Gn:azo1694,EnsemblGenomes-Tr:CAL94311,InterPro:IPR005586,UniProtKB/TrEMBL:A1K656,NCBI_GP:CAL94311.1;Name=CAL94311.1;Note=Conserved hypothetical protein. Homology to ebA6519 of Azoarcus sp. EbN1 of 44%25 (gnl|keqq|eba:ebA6519(KEGG)). no domains predicted. signal peptide present. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94311.1;transl_table=11
AM406670.1	EMBL	gene	1863402	1865054	.	+	.	ID=gene1735;Name=azo1695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1695
AM406670.1	EMBL	CDS	1863402	1865054	.	+	0	ID=cds1693;Parent=gene1735;Dbxref=EnsemblGenomes-Gn:azo1695,EnsemblGenomes-Tr:CAL94312,GOA:A1K657,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:A1K657,NCBI_GP:CAL94312.1;Name=CAL94312.1;Note=Similar to TREMBL:Q9HWI3 (58%25 identity)%3B TREMBL:Q89LN0 (56%25 identity)%3B TREMBL:Q986M2 (56%25 identity). InterPro (IPR000873): AMP-dependent synthetase and ligase. Pfam (PF00501): AMP-binding enzyme.%3B~Function unclear;gbkey=CDS;product=putative AMP-binding protein;protein_id=CAL94312.1;transl_table=11
AM406670.1	EMBL	gene	1865171	1865971	.	+	.	ID=gene1736;Name=paaF2;gbkey=Gene;gene=paaF2;gene_biotype=protein_coding;locus_tag=azo1696
AM406670.1	EMBL	CDS	1865171	1865971	.	+	0	ID=cds1694;Parent=gene1736;Dbxref=EnsemblGenomes-Gn:azo1696,EnsemblGenomes-Tr:CAL94313,GOA:A1K658,InterPro:IPR001753,InterPro:IPR014748,InterPro:IPR018376,InterPro:IPR029045,UniProtKB/TrEMBL:A1K658,NCBI_GP:CAL94313.1;Name=CAL94313.1;Note=Putative enoyl-CoA hydratase. Homology to paaF of E. coli of 36%25 (sprot|PAAF_ECOLI(SRS)) FUNCTION: Could possibly oxidizes fatty acids using specific components (By similarity). CATALYTIC ACTIVITY: (3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H2O. Pfam: Enoyl-CoA hydratase/isomerase family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=paaF2;product=putative enoyl-CoA hydratase;protein_id=CAL94313.1;transl_table=11
AM406670.1	EMBL	gene	1865974	1866795	.	+	.	ID=gene1737;Name=yjjV;gbkey=Gene;gene=yjjV;gene_biotype=protein_coding;locus_tag=azo1697
AM406670.1	EMBL	CDS	1865974	1866795	.	+	0	ID=cds1695;Parent=gene1737;Dbxref=EnsemblGenomes-Gn:azo1697,EnsemblGenomes-Tr:CAL94314,GOA:A1K659,InterPro:IPR001130,InterPro:IPR018228,UniProtKB/TrEMBL:A1K659,NCBI_GP:CAL94314.1;Name=CAL94314.1;Note=Putative deoxyribonuclease yjjV (EC 3.1.21.-). InterPro: Uncharacterized protein family UPF0006. TIGR00010: deoxyribonuclease TatD family.%3B~High confidence in function and specificity;gbkey=CDS;gene=yjjV;product=putative deoxyribonuclease;protein_id=CAL94314.1;transl_table=11
AM406670.1	EMBL	gene	1866763	1867386	.	-	.	ID=gene1738;Name=azo1698;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1698
AM406670.1	EMBL	CDS	1866763	1867386	.	-	0	ID=cds1696;Parent=gene1738;Dbxref=EnsemblGenomes-Gn:azo1698,EnsemblGenomes-Tr:CAL94315,GOA:A1K660,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR015893,UniProtKB/TrEMBL:A1K660,NCBI_GP:CAL94315.1;Name=CAL94315.1;Note=Tetracycline repressor protein class G. Similar to SWISSPROT: sprot|TER7_VIBAN (21%25 Vibrio anguillarum (Listonella anguillarum)%2C tetracycline repressor protein class G). TETR IS THE REPRESSOR OF THE TETRACYCLINE RESISTANCE ELEMENT%3B ITS AMINO-TERMINAL REGION FORMS A HELIX-TURN-HELIX STRUCTURE AND BINDS DNA. BINDING OF TETRACYCLINE TO TETR REDUCES THE REPRESSOR AFFINITY FOR THE TETRACYCLINE RESISTANCE GENE (TETA) PROMOTER OPERATOR SITES. InterPro: IPR001647 HTH_TetR. Pfam: PF00440 Bacterial regulatory proteins%2C tetR family. HTH reporting nucleic acid binding motif.%3B~Family membership;gbkey=CDS;product=putative TetR family transcriptional regulator;protein_id=CAL94315.1;transl_table=11
AM406670.1	EMBL	gene	1867564	1868313	.	+	.	ID=gene1739;Name=etfB1;gbkey=Gene;gene=etfB1;gene_biotype=protein_coding;locus_tag=azo1699
AM406670.1	EMBL	CDS	1867564	1868313	.	+	0	ID=cds1697;Parent=gene1739;Dbxref=EnsemblGenomes-Gn:azo1699,EnsemblGenomes-Tr:CAL94316,GOA:A1K661,InterPro:IPR000049,InterPro:IPR012255,InterPro:IPR014729,InterPro:IPR014730,UniProtKB/TrEMBL:A1K661,NCBI_GP:CAL94316.1;Name=CAL94316.1;Note=Electron transfer flavoprotein%2C beta subunit. Homology to etfB of B. japonicum of 71%25 (sprot|ETFB_BRAJA). The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). Pfam: Electron transfer flavoprotein beta subunit no signal peptide no TMHS%3B~High confidence in function and specificity;gbkey=CDS;gene=etfB1;product=electron transfer flavoprotein%2C beta subunit;protein_id=CAL94316.1;transl_table=11
AM406670.1	EMBL	gene	1868313	1869248	.	+	.	ID=gene1740;Name=etfA1;gbkey=Gene;gene=etfA1;gene_biotype=protein_coding;locus_tag=azo1700
AM406670.1	EMBL	CDS	1868313	1869248	.	+	0	ID=cds1698;Parent=gene1740;Dbxref=EnsemblGenomes-Gn:azo1700,EnsemblGenomes-Tr:CAL94317,GOA:A1K662,InterPro:IPR001308,InterPro:IPR014729,InterPro:IPR014730,InterPro:IPR014731,InterPro:IPR018206,InterPro:IPR029035,UniProtKB/TrEMBL:A1K662,NCBI_GP:CAL94317.1;Name=CAL94317.1;Note=Probable electron transfer flavoprotein%2C alpha subunit. Homology to etfA of B. japonicum of 65%25 (sprot|ETFA_BRAJA) The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein alpha-subunit (IPR001308) Pfam: Electron transfer flavoprotein alpha subunit no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=etfA1;product=probable electron transfer flavoprotein%2C alpha subunit;protein_id=CAL94317.1;transl_table=11
AM406670.1	EMBL	gene	1869332	1869952	.	+	.	ID=gene1741;Name=azo1701;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1701
AM406670.1	EMBL	CDS	1869332	1869952	.	+	0	ID=cds1699;Parent=gene1741;Dbxref=EnsemblGenomes-Gn:azo1701,EnsemblGenomes-Tr:CAL94318,GOA:A1K663,InterPro:IPR002751,UniProtKB/TrEMBL:A1K663,NCBI_GP:CAL94318.1;Name=CAL94318.1;Note=Conserved hypothetical membrane protein. Homology to CV1589 of Chromobacterium violaceum of 36%25 (trembl|Q7NXN7(SRS)). Has PF01891%3BCbiM%3B(IPR002751)This integral membrane protein is involved in cobalamin synthesis. No signal peptide. 5 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94318.1;transl_table=11
AM406670.1	EMBL	gene	1870013	1871812	.	+	.	ID=gene1742;Name=azo1702;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1702
AM406670.1	EMBL	CDS	1870013	1871812	.	+	0	ID=cds1700;Parent=gene1742;Dbxref=EnsemblGenomes-Gn:azo1702,EnsemblGenomes-Tr:CAL94319,GOA:A1K664,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR013786,InterPro:IPR020953,InterPro:IPR025878,UniProtKB/TrEMBL:A1K664,NCBI_GP:CAL94319.1;Name=CAL94319.1;Note=Acyl-CoA dehydrogenase short/branched chain specific mitochondrial precursor (2-methyl branched chain acyl-CoA dehydrogenase) (2-MEBCAD) (2-methylbutyryl-coenzyme A dehydrogenase) (2-methylbutyryl-CoA dehydrogenase). Has greatest activity toward short branched chain acyl- CoA derivative such as (s)-2-methylbutyryl-CoA isobutyryl-CoA and 2-methylhexanoyl-CoA as well as toward short straight chain acyl-CoAs such as butyryl-CoA and hexanoyl-CoA. Can use valproyl- CoA as substrate and may play a role in controlling the metabolic flux of valproic acid in the development of toxicity of this agent. Entry name TREMBL:Q8Y0W8 Identities %3D 358/596 (60%25) InterPro IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR009075%3B AcylCoADH_C_like. IPR009100%3B AcylCoA_dehyd_NM. Pfam PF00441%3B Acyl-CoA_dh%3B 1.%3B~Family membership;gbkey=CDS;product=probable acyl-CoA dehydrogenase;protein_id=CAL94319.1;transl_table=11
AM406670.1	EMBL	gene	1871903	1872685	.	-	.	ID=gene1743;Name=cbf2;gbkey=Gene;gene=cbf2;gene_biotype=protein_coding;locus_tag=azo1703
AM406670.1	EMBL	CDS	1871903	1872685	.	-	0	ID=cds1701;Parent=gene1743;Dbxref=EnsemblGenomes-Gn:azo1703,EnsemblGenomes-Tr:CAL94320,GOA:A1K665,InterPro:IPR000297,InterPro:IPR027304,UniProtKB/TrEMBL:A1K665,NCBI_GP:CAL94320.1;Name=CAL94320.1;Note=Cell binding factor 2 precursor (Major antigen peb4A). Homology to cbf2 of C. jejuni of 34%25 (sprot|CBF2_CAMJE). Belongs to the ppic/parvulin rotamase family InterPro: PpiC-type peptidyl-prolyl cis-trans isomerase (IPR000297) Pfam: PPIC-type PPIASE domain signal peptide no TMH%3B~Family membership;gbkey=CDS;gene=cbf2;product=putative cell binding factor;protein_id=CAL94320.1;transl_table=11
AM406670.1	EMBL	gene	1872682	1872975	.	-	.	ID=gene1744;Name=azo1704;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1704
AM406670.1	EMBL	CDS	1872682	1872975	.	-	0	ID=cds1702;Parent=gene1744;Dbxref=EnsemblGenomes-Gn:azo1704,EnsemblGenomes-Tr:CAL94321,InterPro:IPR002634,UniProtKB/TrEMBL:A1K666,NCBI_GP:CAL94321.1;Name=CAL94321.1;Note=Region start changed from 1873054 to 1872976 (-78 bases);gbkey=CDS;product=putative BolA-like protein;protein_id=CAL94321.1;transl_table=11
AM406670.1	EMBL	gene	1872972	1873271	.	-	.	ID=gene1745;Name=yciI;gbkey=Gene;gene=yciI;gene_biotype=protein_coding;locus_tag=azo1705
AM406670.1	EMBL	CDS	1872972	1873271	.	-	0	ID=cds1703;Parent=gene1745;Dbxref=EnsemblGenomes-Gn:azo1705,EnsemblGenomes-Tr:CAL94322,InterPro:IPR005545,InterPro:IPR011008,UniProtKB/TrEMBL:A1K667,NCBI_GP:CAL94322.1;Name=CAL94322.1;Note=Putative cytoplasmic protein%2C61%25 Identity to SwissProt%3BP31070%2C TrEMBL%3BQ7CQF5. Has Signal peptide. Has PF03795%2C YCII-related domain%3BIPR005545%3B The majority of proteins in this family consist of a single copy of this domain%2C though it is also found as a repeat (Q9AJZ7). A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function.;gbkey=CDS;gene=yciI;product=putative cytoplasmic protein [yciI];protein_id=CAL94322.1;transl_table=11
AM406670.1	EMBL	gene	1873271	1873879	.	-	.	ID=gene1746;Name=ispZ;gbkey=Gene;gene=ispZ;gene_biotype=protein_coding;locus_tag=azo1706
AM406670.1	EMBL	CDS	1873271	1873879	.	-	0	ID=cds1704;Parent=gene1746;Dbxref=EnsemblGenomes-Gn:azo1706,EnsemblGenomes-Tr:CAL94323,GOA:A1K668,InterPro:IPR006008,NCBI_GP:CAL94323.1;Name=CAL94323.1;Note=Probable intracellular septation protein. Involved in cell division%3B probably involved in intracellular septation secG: preprotein translocase SecG subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=ispZ;product=putative intracellular septation protein;protein_id=CAL94323.1;transl_table=11
AM406670.1	EMBL	gene	1873923	1874336	.	-	.	ID=gene1747;Name=azo1707;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1707
AM406670.1	EMBL	CDS	1873923	1874336	.	-	0	ID=cds1705;Parent=gene1747;Dbxref=EnsemblGenomes-Gn:azo1707,EnsemblGenomes-Tr:CAL94324,GOA:A1K669,InterPro:IPR001486,InterPro:IPR009050,InterPro:IPR012292,UniProtKB/TrEMBL:A1K669,NCBI_GP:CAL94324.1;Name=CAL94324.1;Note=Conserved hypothetical globin-like protein. Homology to bd2638 of B. bacteriovorus of 57%25 (tremblnew|CAE80431). Globins are heme-containing proteins involved in binding and/or transporting oxygen. This family of heme binding proteins are found mainly in bacteria. However they can also be found in some protozoa and plants as well. InterPro: Protozoan/cyanobacterial globins (IPR001486) Pfam: Bacterial-like globin. no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical globin-like protein;protein_id=CAL94324.1;transl_table=11
AM406670.1	EMBL	gene	1874441	1875826	.	-	.	ID=gene1748;Name=envZ1;gbkey=Gene;gene=envZ1;gene_biotype=protein_coding;locus_tag=azo1708
AM406670.1	EMBL	CDS	1874441	1875826	.	-	0	ID=cds1706;Parent=gene1748;Dbxref=EnsemblGenomes-Gn:azo1708,EnsemblGenomes-Tr:CAL94325,GOA:A1K670,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1K670,NCBI_GP:CAL94325.1;Name=CAL94325.1;Note=Probable osmolarity sensor protein EnvZ%2C%3B~Specificity unclear;gbkey=CDS;gene=envZ1;product=probable osmolarity sensor protein;protein_id=CAL94325.1;transl_table=11
AM406670.1	EMBL	gene	1875852	1876598	.	-	.	ID=gene1749;Name=ompR1;gbkey=Gene;gene=ompR1;gene_biotype=protein_coding;locus_tag=azo1709
AM406670.1	EMBL	CDS	1875852	1876598	.	-	0	ID=cds1707;Parent=gene1749;Dbxref=EnsemblGenomes-Gn:azo1709,EnsemblGenomes-Tr:CAL94326,GOA:A1K671,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K671,NCBI_GP:CAL94326.1;Name=CAL94326.1;Note=Transcriptional regulatory protein ompR%2CTrans_reg_C. IPR001789 Response_reg. Pfam: PF00486%3B trans_reg_C. PF00072 response_reg. SMART: SM00448 REC. THE N-TERMINUS OF THIS PROTEIN IS REQUIRED FOR THE TRANSCRIPTIONAL EXPRESSION OF BOTH MAJOR OUTER MEMBRANE PROTEIN GENES OMPF AND OMPC%3B ITS CARBOXYL-TERMINAL MOIETY MEDIATES THE MULTIMERIZATION OF THE OMPR PROTEIN. AS A MULTIMER IT TURNS ON THE EXPRESSION OF THE OMPC GENE%3B AS A MONOMER IT TURNS ON THE EXPRESSION OF THE OMPF GENE.%3B~High confidence in function and specificity;gbkey=CDS;gene=ompR1;product=response regulator;protein_id=CAL94326.1;transl_table=11
AM406670.1	EMBL	gene	1876813	1877142	.	+	.	ID=gene1750;Name=azo1710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1710
AM406670.1	EMBL	CDS	1876813	1877142	.	+	0	ID=cds1708;Parent=gene1750;Dbxref=EnsemblGenomes-Gn:azo1710,EnsemblGenomes-Tr:CAL94327,UniProtKB/TrEMBL:A1K672,NCBI_GP:CAL94327.1;Name=CAL94327.1;Note=Hypothetical secreted protein. No homologs in the database. Signal Peptide present. No TMHs. No domains predicted;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94327.1;transl_table=11
AM406670.1	EMBL	gene	1877212	1877901	.	+	.	ID=gene1751;Name=azo1711;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1711
AM406670.1	EMBL	CDS	1877212	1877901	.	+	0	ID=cds1709;Parent=gene1751;Dbxref=EnsemblGenomes-Gn:azo1711,EnsemblGenomes-Tr:CAL94328,GOA:A1K673,InterPro:IPR000905,InterPro:IPR022496,UniProtKB/TrEMBL:A1K673,NCBI_GP:CAL94328.1;Name=CAL94328.1;Note=Conserved hypothetical glycoprotease. Homology to yeaZ of N. europae of 41%25 (trembl|Q82US9). InterPro: Glycoprotease (M22) metallo-protease family (IPR000905). Tigrfam: gcp: metalloendopeptidase putative glycoprotease family. Pfam: Glyocprotease family. no signal peptide. no TMHs.%3B~Family membership;gbkey=CDS;product=conserved hypothetical glycoprotease;protein_id=CAL94328.1;transl_table=11
AM406670.1	EMBL	gene	1877931	1878353	.	+	.	ID=gene1752;Name=azo1712;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1712
AM406670.1	EMBL	CDS	1877931	1878353	.	+	0	ID=cds1710;Parent=gene1752;Dbxref=EnsemblGenomes-Gn:azo1712,EnsemblGenomes-Tr:CAL94329,GOA:A1K674,InterPro:IPR000182,InterPro:IPR006464,InterPro:IPR016181,UniProtKB/TrEMBL:A1K674,NCBI_GP:CAL94329.1;Name=CAL94329.1;Note=Conserved hypothetical ribosomal-protein-alanine acetyltransferase. Homology to ebA6491 of Azoarcus sp. EbN1 of 63%25 (gnl|keqq|eba:ebA6491(KEGG)). Pfam: Acetyltransferase (GNAT) family. Tigrfam: ribosomal-protein-alanine acetyltransferase. No signal peptide. No TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical ribosomal-protein-alanine acetyltransferase;protein_id=CAL94329.1;transl_table=11
AM406670.1	EMBL	gene	1878350	1879201	.	+	.	ID=gene1753;Name=azo1713;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1713
AM406670.1	EMBL	CDS	1878350	1879201	.	+	0	ID=cds1711;Parent=gene1753;Dbxref=EnsemblGenomes-Gn:azo1713,EnsemblGenomes-Tr:CAL94330,GOA:A1K675,InterPro:IPR005122,InterPro:IPR005273,UniProtKB/TrEMBL:A1K675,NCBI_GP:CAL94330.1;Name=CAL94330.1;Note=Putative DNA polymerase-related protein%2Cbacteriophage-type. TIGRFAM: rad23: UV excision repair protein Rad23%3B~Specificity unclear;gbkey=CDS;product=DNA-directed DNA polymerase;protein_id=CAL94330.1;transl_table=11
AM406670.1	EMBL	gene	1879223	1880473	.	-	.	ID=gene1754;Name=azo1714;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1714
AM406670.1	EMBL	CDS	1879223	1880473	.	-	0	ID=cds1712;Parent=gene1754;Dbxref=EnsemblGenomes-Gn:azo1714,EnsemblGenomes-Tr:CAL94331,GOA:A1K676,InterPro:IPR011701,InterPro:IPR016196,UniProtKB/TrEMBL:A1K676,NCBI_GP:CAL94331.1;Name=CAL94331.1;Note=Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Homolog to the hypothetical protein ygeD%2C a putative resistence protein from Y. pestis(by similarity). 2A0121: H+ Antiporter protein%3B~High confidence in function and specificity;gbkey=CDS;product=putative permease member of MFS;protein_id=CAL94331.1;transl_table=11
AM406670.1	EMBL	gene	1880629	1881549	.	+	.	ID=gene1755;Name=rbcR;gbkey=Gene;gene=rbcR;gene_biotype=protein_coding;locus_tag=azo1715
AM406670.1	EMBL	CDS	1880629	1881549	.	+	0	ID=cds1713;Parent=gene1755;Dbxref=EnsemblGenomes-Gn:azo1715,EnsemblGenomes-Tr:CAL94332,GOA:A1K677,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K677,NCBI_GP:CAL94332.1;Name=CAL94332.1;Note=Trans-acting transcriptional regulator of RuBisCO genes expression Putative HTH-type transcriptional regulator Contains 1 HTH lysR-type DNA-binding domain%2Cbelonds to the LysR family InterPro: Bacterial regulatory protein LysR family ModE_repress: ModE molybdate transport 32%25 HTH_LysR. IPR005119%3B LysR_subst. IPR009058%3B Wing_hlx_DNA_bnd. PF00126%3B HTH_1%3B 1. PF03466%3B LysR_substrate%3B 1%3B~High confidence in function and specificity;gbkey=CDS;gene=rbcR;product=RuBisCO operon transcriptional regulator (RbcR)%2Cputative;protein_id=CAL94332.1;transl_table=11
AM406670.1	EMBL	gene	1881549	1882919	.	+	.	ID=gene1756;Name=radA;gbkey=Gene;gene=radA;gene_biotype=protein_coding;locus_tag=azo1716
AM406670.1	EMBL	CDS	1881549	1882919	.	+	0	ID=cds1714;Parent=gene1756;Dbxref=EnsemblGenomes-Gn:azo1716,EnsemblGenomes-Tr:CAL94333,GOA:A1K678,InterPro:IPR003593,InterPro:IPR004504,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR020588,InterPro:IPR027417,UniProtKB/TrEMBL:A1K678,NCBI_GP:CAL94333.1;Name=CAL94333.1;Note=Probable DNA repair protein radA. Homology to radA of E. coli of 60%25 (sprot|RADA_ECOLI) Are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins%2C peptides%2C glycopeptides. InterPro: DNA repair protein RadA (IPR004504) Tigrfam: sms: DNA repair protein RadA no signal peptide no TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=radA;product=probable DNA repair protein RadA;protein_id=CAL94333.1;transl_table=11
AM406670.1	EMBL	gene	1882984	1883250	.	-	.	ID=gene1757;Name=azo1717;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1717
AM406670.1	EMBL	CDS	1882984	1883250	.	-	0	ID=cds1715;Parent=gene1757;Dbxref=EnsemblGenomes-Gn:azo1717,EnsemblGenomes-Tr:CAL94334,UniProtKB/TrEMBL:A1K679,NCBI_GP:CAL94334.1;Name=CAL94334.1;Note=Hypothetical protein . Extremely weak homology with any hits in the database. No Features%2Csignal Peptide%2Cmotifs are known domains present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94334.1;transl_table=11
AM406670.1	EMBL	gene	1883575	1884198	.	+	.	ID=gene1758;Name=azo1718;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1718
AM406670.1	EMBL	CDS	1883575	1884198	.	+	0	ID=cds1716;Parent=gene1758;Dbxref=EnsemblGenomes-Gn:azo1718,EnsemblGenomes-Tr:CAL94335,InterPro:IPR021527,UniProtKB/TrEMBL:A1K680,NCBI_GP:CAL94335.1;Name=CAL94335.1;Note=Hypothetical protein%2C has very weak homology with hits in the Database(TrEMBL%3BQ63I29) Coils2 program reporting presence of coiled-coiled.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94335.1;transl_table=11
AM406670.1	EMBL	gene	1884227	1885696	.	+	.	ID=gene1759;Name=azo1719;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1719
AM406670.1	EMBL	CDS	1884227	1885696	.	+	0	ID=cds1717;Parent=gene1759;Dbxref=EnsemblGenomes-Gn:azo1719,EnsemblGenomes-Tr:CAL94336,InterPro:IPR025350,InterPro:IPR029044,UniProtKB/TrEMBL:A1K681,NCBI_GP:CAL94336.1;Name=CAL94336.1;Note=Conserved hypothetical protein. Homology to ebA7025 of Azoarcus sp. EbN1 of 68%25 (gnl|keqq|eba:ebA7025(KEGG)). Pfam: Glycos_transf_2. Diverse family%2C transferring sugar from UDP-glucose%2C UDP-N-acetyl- galactosamine%2C GDP-mannose or CDP-abequose%2C to a range of substrates including cellulose%2C dolichol phosphate and teichoic acids. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94336.1;transl_table=11
AM406670.1	EMBL	gene	1885699	1886832	.	+	.	ID=gene1760;Name=azo1720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1720
AM406670.1	EMBL	CDS	1885699	1886832	.	+	0	ID=cds1718;Parent=gene1760;Dbxref=EnsemblGenomes-Gn:azo1720,EnsemblGenomes-Tr:CAL94337,GOA:A1K682,InterPro:IPR002201,UniProtKB/TrEMBL:A1K682,NCBI_GP:CAL94337.1;Name=CAL94337.1;Note=Family membership;gbkey=CDS;product=glycosyltransferase;protein_id=CAL94337.1;transl_table=11
AM406670.1	EMBL	gene	1886756	1887814	.	-	.	ID=gene1761;Name=azo1721;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1721
AM406670.1	EMBL	CDS	1886756	1887814	.	-	0	ID=cds1719;Parent=gene1761;Dbxref=EnsemblGenomes-Gn:azo1721,EnsemblGenomes-Tr:CAL94338,GOA:A1K683,InterPro:IPR002201,UniProtKB/TrEMBL:A1K683,NCBI_GP:CAL94338.1;Name=CAL94338.1;Note=Similar to waaQ.%3B~Family membership;gbkey=CDS;product=heptosyltransferase;protein_id=CAL94338.1;transl_table=11
AM406670.1	EMBL	gene	1887936	1888283	.	+	.	ID=gene1762;Name=azo1722;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1722
AM406670.1	EMBL	CDS	1887936	1888283	.	+	0	ID=cds1720;Parent=gene1762;Dbxref=EnsemblGenomes-Gn:azo1722,EnsemblGenomes-Tr:CAL94339,UniProtKB/TrEMBL:A1K684,NCBI_GP:CAL94339.1;Name=CAL94339.1;Note=Hypothetical protein%2C weak homology with hits. TrEMBL%3BQ9KPT2(45%25 identity) No domains%2C repeats%2C motifs or features present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94339.1;transl_table=11
AM406670.1	EMBL	gene	1888362	1889357	.	+	.	ID=gene1763;Name=azo1723;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1723
AM406670.1	EMBL	CDS	1888362	1889357	.	+	0	ID=cds1721;Parent=gene1763;Dbxref=EnsemblGenomes-Gn:azo1723,EnsemblGenomes-Tr:CAL94340,InterPro:IPR017804,InterPro:IPR019257,InterPro:IPR029063,UniProtKB/TrEMBL:A1K685,NCBI_GP:CAL94340.1;Name=CAL94340.1;Note=Conserved hypothetical protein. Homology to blr5713 of B.japonicum of 45%25 (tremble:Q89IC6). No domains predicted. No TMHs. SignalP 3.0 predicts no signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94340.1;transl_table=11
AM406670.1	EMBL	gene	1889404	1889835	.	+	.	ID=gene1764;Name=azo1724;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1724
AM406670.1	EMBL	CDS	1889404	1889835	.	+	0	ID=cds1722;Parent=gene1764;Dbxref=EnsemblGenomes-Gn:azo1724,EnsemblGenomes-Tr:CAL94341,InterPro:IPR021309,UniProtKB/TrEMBL:A1K686,NCBI_GP:CAL94341.1;Name=CAL94341.1;Note=Conserved hypothetical protein. Homology to SMA1058 of S.meliloti of 48%25 (trembl:Q92ZB7). No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94341.1;transl_table=11
AM406670.1	EMBL	gene	1889835	1891748	.	+	.	ID=gene1765;Name=glgB1;gbkey=Gene;gene=glgB1;gene_biotype=protein_coding;locus_tag=azo1725
AM406670.1	EMBL	CDS	1889835	1891748	.	+	0	ID=cds1723;Parent=gene1765;Dbxref=EnsemblGenomes-Gn:azo1725,EnsemblGenomes-Tr:CAL94342,GOA:A1K687,InterPro:IPR004193,InterPro:IPR006047,InterPro:IPR006048,InterPro:IPR006407,InterPro:IPR013780,InterPro:IPR013781,InterPro:IPR013783,InterPro:IPR014756,InterPro:IPR015902,InterPro:IPR017853,UniProtKB/TrEMBL:A1K687,NCBI_GP:CAL94342.1;Name=CAL94342.1;Note=14-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen branching enzyme) (BE) (14-alpha-D-glucan:14-alpha-D-glucan 6-glucosyl-transferase).Catalyzes the formation of the alpha-16-glucosidic linkages in glycogen by scission of a 14-alpha-linked oligosaccharide from growing alpha-14-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-16 position. 54%25 Alp_amyl_cat_sub.IPR004193%3B Glyco_hydro_13N. Pfam:PF00128%3B Alpha-amylase%3B 1. PF02922%3B Isoamylase_N%3B 2.%3B~High confidence in function and specificity;gbkey=CDS;gene=glgB1;product=putative 1%2C4-alpha-glucan branching enzyme;protein_id=CAL94342.1;transl_table=11
AM406670.1	EMBL	gene	1891732	1893780	.	+	.	ID=gene1766;Name=pep1;gbkey=Gene;gene=pep1;gene_biotype=protein_coding;locus_tag=azo1726
AM406670.1	EMBL	CDS	1891732	1893780	.	+	0	ID=cds1724;Parent=gene1766;Dbxref=EnsemblGenomes-Gn:azo1726,EnsemblGenomes-Tr:CAL94343,GOA:A1K688,InterPro:IPR006047,InterPro:IPR013781,InterPro:IPR015902,InterPro:IPR017853,InterPro:IPR021828,InterPro:IPR026585,UniProtKB/TrEMBL:A1K688,NCBI_GP:CAL94343.1;Name=CAL94343.1;Note=O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates%2C or between a carbohydrate and a non-carbohydrate moiety.Probable glucanohydrolase Pep1B. Could convert glycogen into units that may be subsequently converted into trehalose.Belongs to family 13 of glycosyl hydrolases. Glge subfamily. 47%25 Alpha_amyl_cat. Pfam:PF00128%3B alpha-amylase%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=pep1;product=putative glucanohydrolase;protein_id=CAL94343.1;transl_table=11
AM406670.1	EMBL	gene	1893796	1897116	.	+	.	ID=gene1767;Name=treS;gbkey=Gene;gene=treS;gene_biotype=protein_coding;locus_tag=azo1727
AM406670.1	EMBL	CDS	1893796	1897116	.	+	0	ID=cds1725;Parent=gene1767;Dbxref=EnsemblGenomes-Gn:azo1727,EnsemblGenomes-Tr:CAL94344,GOA:A1K689,InterPro:IPR006047,InterPro:IPR006589,InterPro:IPR011009,InterPro:IPR012810,InterPro:IPR012811,InterPro:IPR013780,InterPro:IPR013781,InterPro:IPR015902,InterPro:IPR017853,UniProtKB/TrEMBL:A1K689,NCBI_GP:CAL94344.1;Name=CAL94344.1;Note=Trehalose synthase(Maltose alpha-D-glucosyltransferase).Catalyzes the conversion of maltose into alpha%2Calpha- trehalose by transglucosylation. 54%25 Alp_amyl_cat_sub.IPR006047%3B Alpha_amyl_cat.InterPro: Glycoside hydrolase family 13. Pfam:PF00128%3B alpha-amylase%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=treS;product=putative trehalose synthase;protein_id=CAL94344.1;transl_table=11
AM406670.1	EMBL	gene	1897139	1897705	.	-	.	ID=gene1768;Name=azo1728;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1728
AM406670.1	EMBL	CDS	1897139	1897705	.	-	0	ID=cds1726;Parent=gene1768;Dbxref=EnsemblGenomes-Gn:azo1728,EnsemblGenomes-Tr:CAL94345,GOA:A1K690,InterPro:IPR011250,InterPro:IPR018550,UniProtKB/TrEMBL:A1K690,NCBI_GP:CAL94345.1;Name=CAL94345.1;Note=Conserved hypothetical secreted protein. Homology to BPP3320 of B.bronchiseptica of 31%25 (tremble:Q7W5H1). No domains predicted. Signap P reporting signal peptide. No TMH reported.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94345.1;transl_table=11
AM406670.1	EMBL	gene	1897982	1899142	.	+	.	ID=gene1769;Name=azo1729;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1729
AM406670.1	EMBL	CDS	1897982	1899142	.	+	0	ID=cds1727;Parent=gene1769;Dbxref=EnsemblGenomes-Gn:azo1729,EnsemblGenomes-Tr:CAL94346,InterPro:IPR009078,InterPro:IPR012347,UniProtKB/TrEMBL:A1K691,NCBI_GP:CAL94346.1;Name=CAL94346.1;Note=Conserved hypothetical protein. Homology to mm2747 of M. mazei of 39%25 (trembl|Q8PTG8(SRS). no domains predicted. no TMHs. no signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94346.1;transl_table=11
AM406670.1	EMBL	gene	1899198	1899947	.	+	.	ID=gene1770;Name=azo1730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1730
AM406670.1	EMBL	CDS	1899198	1899947	.	+	0	ID=cds1728;Parent=gene1770;Dbxref=EnsemblGenomes-Gn:azo1730,EnsemblGenomes-Tr:CAL94347,GOA:A1K692,InterPro:IPR008331,InterPro:IPR009078,InterPro:IPR012347,UniProtKB/TrEMBL:A1K692,NCBI_GP:CAL94347.1;Name=CAL94347.1;Note=Conserved hypothetical protein. Homology to ebA6994 of Azoarcus sp. EbN1 of 59%25 (gnl|keqq|eba:ebA6994(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94347.1;transl_table=11
AM406670.1	EMBL	gene	1899978	1900238	.	+	.	ID=gene1771;Name=azo1731;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1731
AM406670.1	EMBL	CDS	1899978	1900238	.	+	0	ID=cds1729;Parent=gene1771;Dbxref=EnsemblGenomes-Gn:azo1731,EnsemblGenomes-Tr:CAL94348,UniProtKB/TrEMBL:A1K693,NCBI_GP:CAL94348.1;Name=CAL94348.1;Note=Hypothetical membrane protein. No homology to the data bank. No domain prediction. No signal peptide. 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94348.1;transl_table=11
AM406670.1	EMBL	gene	1900291	1901157	.	+	.	ID=gene1772;Name=azo1732;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1732
AM406670.1	EMBL	CDS	1900291	1901157	.	+	0	ID=cds1730;Parent=gene1772;Dbxref=EnsemblGenomes-Gn:azo1732,EnsemblGenomes-Tr:CAL94349,GOA:A1K694,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K694,NCBI_GP:CAL94349.1;Name=CAL94349.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2C%3B~Family membership;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL94349.1;transl_table=11
AM406670.1	EMBL	gene	1901147	1901629	.	-	.	ID=gene1773;Name=azo1733;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1733
AM406670.1	EMBL	CDS	1901147	1901629	.	-	0	ID=cds1731;Parent=gene1773;Dbxref=EnsemblGenomes-Gn:azo1733,EnsemblGenomes-Tr:CAL94350,UniProtKB/TrEMBL:A1K695,NCBI_GP:CAL94350.1;Name=CAL94350.1;Note=Hypothetical protein with unknown function. Domain predicted by Pfam%2C PF01381 Helix-turn-helix.;gbkey=CDS;product=hypothetical protein;protein_id=CAL94350.1;transl_table=11
AM406670.1	EMBL	gene	1901759	1904050	.	+	.	ID=gene1774;Name=azo1734;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1734
AM406670.1	EMBL	CDS	1901759	1904050	.	+	0	ID=cds1732;Parent=gene1774;Dbxref=EnsemblGenomes-Gn:azo1734,EnsemblGenomes-Tr:CAL94351,InterPro:IPR024501,InterPro:IPR029058,UniProtKB/TrEMBL:A1K696,NCBI_GP:CAL94351.1;Name=CAL94351.1;Note=Entry name TREMBL:Q89PM4 Identities %3D 257/546 (47%25) Prediction: Non-secretory protein Signal peptide probability: 0.018 Number of predicted TMHs: 0 pts-lac: PTS system lactose/cellobios;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94351.1;transl_table=11
AM406670.1	EMBL	gene	1904135	1904476	.	+	.	ID=gene1775;Name=azo1735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1735
AM406670.1	EMBL	CDS	1904135	1904476	.	+	0	ID=cds1733;Parent=gene1775;Dbxref=EnsemblGenomes-Gn:azo1735,EnsemblGenomes-Tr:CAL94352,UniProtKB/TrEMBL:A1K697,NCBI_GP:CAL94352.1;Name=CAL94352.1;Note=Conserved hypothetical protein. Homology to rO1139 of S. meliloti of 48%25 (trembl|Q92QZ6). No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94352.1;transl_table=11
AM406670.1	EMBL	gene	1904512	1905063	.	-	.	ID=gene1776;Name=azo1736;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1736
AM406670.1	EMBL	CDS	1904512	1905063	.	-	0	ID=cds1734;Parent=gene1776;Dbxref=EnsemblGenomes-Gn:azo1736,EnsemblGenomes-Tr:CAL94353,InterPro:IPR012312,UniProtKB/TrEMBL:A1K698,NCBI_GP:CAL94353.1;Name=CAL94353.1;Note=Hypothetical protein. No good homology with any Hits in the database.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94353.1;transl_table=11
AM406670.1	EMBL	gene	1905343	1906143	.	+	.	ID=gene1777;Name=azo1737;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1737
AM406670.1	EMBL	CDS	1905343	1906143	.	+	0	ID=cds1735;Parent=gene1777;Dbxref=EnsemblGenomes-Gn:azo1737,EnsemblGenomes-Tr:CAL94354,UniProtKB/TrEMBL:A1K699,NCBI_GP:CAL94354.1;Name=CAL94354.1;Note=Conserved hypothetical membrane protein. Homology to ebA6987 of Azoarcus sp. EbN1 of 62%25 (gnl|keqq|eba:ebA6987(KEGG)). no domains predicted. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94354.1;transl_table=11
AM406670.1	EMBL	gene	1906182	1906676	.	+	.	ID=gene1778;Name=azo1738;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1738
AM406670.1	EMBL	CDS	1906182	1906676	.	+	0	ID=cds1736;Parent=gene1778;Dbxref=EnsemblGenomes-Gn:azo1738,EnsemblGenomes-Tr:CAL94355,InterPro:IPR011033,InterPro:IPR027275,UniProtKB/TrEMBL:A1K6A0,NCBI_GP:CAL94355.1;Name=CAL94355.1;Note=Hypothetical protein has weak homology to Transglycosylase of penicillin-binding protein 1c(pbpC).TrEMBL:Q8ZN47(56%25). ***Contains PRC-barrel domain(pfam05239). The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long%2C and found widely represented in bacteria%2C archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM%2C which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain. No Signal Peptide reported. No TMH's reported.;gbkey=CDS;product=hypothetical protein;protein_id=CAL94355.1;transl_table=11
AM406670.1	EMBL	gene	1906742	1907686	.	-	.	ID=gene1779;Name=azo1739;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1739
AM406670.1	EMBL	CDS	1906742	1907686	.	-	0	ID=cds1737;Parent=gene1779;Dbxref=EnsemblGenomes-Gn:azo1739,EnsemblGenomes-Tr:CAL94356,GOA:A1K6A1,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K6A1,NCBI_GP:CAL94356.1;Name=CAL94356.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:O32291 (45%25 identity)%3B SWISSPROT:P54554 (28%25 identity). Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL94356.1;transl_table=11
AM406670.1	EMBL	gene	1907834	1908745	.	+	.	ID=gene1780;Name=azo1740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1740
AM406670.1	EMBL	CDS	1907834	1908745	.	+	0	ID=cds1738;Parent=gene1780;Dbxref=EnsemblGenomes-Gn:azo1740,EnsemblGenomes-Tr:CAL94357,GOA:A1K6A2,InterPro:IPR006164,InterPro:IPR009187,InterPro:IPR016194,UniProtKB/TrEMBL:A1K6A2,NCBI_GP:CAL94357.1;Name=CAL94357.1;Note=conserved hypothetical protein%2C 49%25 identity to TrEMBL%3BQ7W766. Has SMART%3BSM00559%3BKu78%3BKu70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen%3B(IPR006164)%3BThis is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain%2C that also occurs in bacterial hypothetical proteins.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94357.1;transl_table=11
AM406670.1	EMBL	gene	1908782	1911427	.	+	.	ID=gene1781;Name=azo1741;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1741
AM406670.1	EMBL	CDS	1908782	1911427	.	+	0	ID=cds1739;Parent=gene1781;Dbxref=EnsemblGenomes-Gn:azo1741,EnsemblGenomes-Tr:CAL94358,GOA:A1K6A3,InterPro:IPR002755,InterPro:IPR012309,InterPro:IPR012310,InterPro:IPR012340,InterPro:IPR014143,InterPro:IPR014144,InterPro:IPR014145,InterPro:IPR014146,UniProtKB/TrEMBL:A1K6A3,NCBI_GP:CAL94358.1;Name=CAL94358.1;Note=Putative DNA-ligase like protein Rv0938/MT0965. dnl1: DNA ligase I ATP-dependent.%3B~Specificity unclear%3B~ORF4;gbkey=CDS;product=hypothetical protein;protein_id=CAL94358.1;transl_table=11
AM406670.1	EMBL	gene	1911701	1912390	.	+	.	ID=gene1782;Name=azo1742;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1742
AM406670.1	EMBL	CDS	1911701	1912390	.	+	0	ID=cds1740;Parent=gene1782;Dbxref=EnsemblGenomes-Gn:azo1742,EnsemblGenomes-Tr:CAL94359,InterPro:IPR013424,UniProtKB/TrEMBL:A1K6A4,NCBI_GP:CAL94359.1;Name=CAL94359.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. Signal peptide present. No TMHs.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94359.1;transl_table=11
AM406670.1	EMBL	gene	1912374	1913198	.	-	.	ID=gene1783;Name=azo1743;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1743
AM406670.1	EMBL	CDS	1912374	1913198	.	-	0	ID=cds1741;Parent=gene1783;Dbxref=EnsemblGenomes-Gn:azo1743,EnsemblGenomes-Tr:CAL94360,GOA:A1K6A5,InterPro:IPR002508,InterPro:IPR007709,UniProtKB/TrEMBL:A1K6A5,NCBI_GP:CAL94360.1;Name=CAL94360.1;Note=Conserved hypothetical protein. Homology to ebA6983 of Azoarcus sp. EbN1 of 50%25 (gnl|keqq|eba:ebA6983(KEGG)). Pfam: N-formylglutamate amidohydrolase. Formylglutamate amidohydrolase (FGase) catalyses the terminal reaction in the five-step pathway for histidine utilisation in Pseudomonas putida. By this action%2C N-formyl-L-glutamate (FG) is hydrolysed to produce L-glutamate plus formate. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94360.1;transl_table=11
AM406670.1	EMBL	gene	1913153	1914424	.	-	.	ID=gene1784;Name=azo1744;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1744
AM406670.1	EMBL	CDS	1913153	1914424	.	-	0	ID=cds1742;Parent=gene1784;Dbxref=EnsemblGenomes-Gn:azo1744,EnsemblGenomes-Tr:CAL94361,GOA:A1K6A6,InterPro:IPR006336,UniProtKB/TrEMBL:A1K6A6,NCBI_GP:CAL94361.1;Name=CAL94361.1;Note=Hypothetical protein%2C32%25 identity (49%25 similarity) to SwissProt%3BO27977 Has PF04107%3BGlutamate-cysteine ligase family 2(GCS2)%3B(IPR006336)Also known as gamma-glutamylcysteine synthetase and gamma-ECS. This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea%2C bacteria and plants. May and Leaver [1] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes%2Cfrom an ancestral bacterial enzyme. They also state that Arabidopsis thaliana gamma-glutamylcysteine synthetase is structurally unrelated to mammalian%2C yeast and Escherichia coli homologues. In plants%2C there are separate cytosolic and chloroplast forms of the enzyme.;gbkey=CDS;product=Glutamate-cysteine ligase;protein_id=CAL94361.1;transl_table=11
AM406670.1	EMBL	gene	1914421	1915890	.	-	.	ID=gene1785;Name=rimK;gbkey=Gene;gene=rimK;gene_biotype=protein_coding;locus_tag=azo1745
AM406670.1	EMBL	CDS	1914421	1915890	.	-	0	ID=cds1743;Parent=gene1785;Dbxref=EnsemblGenomes-Gn:azo1745,EnsemblGenomes-Tr:CAL94362,GOA:A1K6A7,InterPro:IPR011761,InterPro:IPR013651,InterPro:IPR013815,InterPro:IPR016185,InterPro:IPR025839,UniProtKB/TrEMBL:A1K6A7,NCBI_GP:CAL94362.1;Name=CAL94362.1;Note=Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) rimK_fam: S6 modification enzyme RimK%3B~Specificity unclear;gbkey=CDS;gene=rimK;product=ribosomal protein S6 modification protein-related protein;protein_id=CAL94362.1;transl_table=11
AM406670.1	EMBL	gene	1915934	1916671	.	-	.	ID=gene1786;Name=azo1746;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1746
AM406670.1	EMBL	CDS	1915934	1916671	.	-	0	ID=cds1744;Parent=gene1786;Dbxref=EnsemblGenomes-Gn:azo1746,EnsemblGenomes-Tr:CAL94363,UniProtKB/TrEMBL:A1K6A8,NCBI_GP:CAL94363.1;Name=CAL94363.1;Note=Conserved hypothetical protein. Homology to TdenA01000334 of Thiobacillus denitrificans of 67%25 (gi|52008038|ref|ZP_00335415.1|(NBCI ENTREZ)). No domains present. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94363.1;transl_table=11
AM406670.1	EMBL	gene	1916675	1917442	.	-	.	ID=gene1787;Name=azo1747;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1747
AM406670.1	EMBL	CDS	1916675	1917442	.	-	0	ID=cds1745;Parent=gene1787;Dbxref=EnsemblGenomes-Gn:azo1747,EnsemblGenomes-Tr:CAL94364,UniProtKB/TrEMBL:A1K6A9,NCBI_GP:CAL94364.1;Name=CAL94364.1;Note=Hypothetical secreted protein. No homology to the data bank. No TMHs Signal Peptide present. Has PS50914%3B BON%3BThe BON (bacterial OsmY and nodulation) domain is found in the bacterial osmotic-shock-resistance protein OsmY%2C a family of haemolysins%2C a group of nodulation specificity proteins and secretory channels%2C and several hypothetical proteins. It is typically about 60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94364.1;transl_table=11
AM406670.1	EMBL	gene	1917567	1918007	.	+	.	ID=gene1788;Name=azo1748;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1748
AM406670.1	EMBL	CDS	1917567	1918007	.	+	0	ID=cds1746;Parent=gene1788;Dbxref=EnsemblGenomes-Gn:azo1748,EnsemblGenomes-Tr:CAL94365,GOA:A1K6B0,InterPro:IPR000644,UniProtKB/TrEMBL:A1K6B0,NCBI_GP:CAL94365.1;Name=CAL94365.1;Note=Hypothetical protein yhcV. TREMBL:Q92V69:54%25identity%2C 76%25 similarity. TREMBL:Q81UY6 Pfam:CBS domain%2C Anticodon binding domain. TIGRFAM: KpsF/GutQ family proteins. No signal peptide or transmembrane helix reported. CBS domains are small intracellular modules of unknown function. They are mostly found in 2 or four copies within a protein. Pairs of CBS domains dimerise to form a stable globular domain. Two CBS domains are found in inosine-monophosphate dehydrogenase from all species%2C however the CBS domains are not needed for activity. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet.. A number of disease states are associated with CBS-containing proteins including homocystinuria%2C Becker's and Thomsen disease. InterPro: CBS domain urease_gam: urease gamma subunit%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94365.1;transl_table=11
AM406670.1	EMBL	gene	1918070	1918228	.	-	.	ID=gene1789;Name=azo1749;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1749
AM406670.1	EMBL	CDS	1918070	1918228	.	-	0	ID=cds1747;Parent=gene1789;Dbxref=EnsemblGenomes-Gn:azo1749,EnsemblGenomes-Tr:CAL94366,InterPro:IPR021738,UniProtKB/TrEMBL:A1K6B1,NCBI_GP:CAL94366.1;Name=CAL94366.1;Note=Conserved hypothetical membrane protein. Homology to r02018 of S. meliloti of 72%25 (trembl|Q92K67(SRS). no damains predicted .signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94366.1;transl_table=11
AM406670.1	EMBL	gene	1918212	1918685	.	+	.	ID=gene1790;Name=azo1750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1750
AM406670.1	EMBL	CDS	1918212	1918685	.	+	0	ID=cds1748;Parent=gene1790;Dbxref=EnsemblGenomes-Gn:azo1750,EnsemblGenomes-Tr:CAL94367,GOA:A1K6B2,InterPro:IPR009760,NCBI_GP:CAL94367.1;Name=CAL94367.1;Note=Hypothetical membrane protein. No homology of the entire protein to the data bank. Has DUF1328(Protein of Unknown family) domain. PF07043%3BIPR009760%3B This family consists of several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown. no signal peptide. 3 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94367.1;transl_table=11
AM406670.1	EMBL	gene	1918699	1919052	.	+	.	ID=gene1791;Name=azo1751;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1751
AM406670.1	EMBL	CDS	1918699	1919052	.	+	0	ID=cds1749;Parent=gene1791;Dbxref=EnsemblGenomes-Gn:azo1751,EnsemblGenomes-Tr:CAL94368,InterPro:IPR007055,UniProtKB/TrEMBL:A1K6B3,NCBI_GP:CAL94368.1;Name=CAL94368.1;Note=Conserved hypothetical secreted protein. Homology to ebA6968 of Azoarcus sp. EbN1 of 38%25 (gnl|keqq|eba:ebA6968(KEGG)). Pfam: Putative phospholipid-binding domain This domain is found in a family of osmotic shock protection proteins (e.g. P27291). It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94368.1;transl_table=11
AM406670.1	EMBL	gene	1919143	1919466	.	+	.	ID=gene1792;Name=azo1752;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1752
AM406670.1	EMBL	CDS	1919143	1919466	.	+	0	ID=cds1750;Parent=gene1792;Dbxref=EnsemblGenomes-Gn:azo1752,EnsemblGenomes-Tr:CAL94369,InterPro:IPR007055,InterPro:IPR014004,UniProtKB/TrEMBL:A1K6B4,NCBI_GP:CAL94369.1;Name=CAL94369.1;Note=Conserved hypothetical secreted protein: Homology to ne0129 of N. europaea of 43%25 (trembl|Q82XW6). Smart: Bacterial OsmY and nodulation domain (BON). The BON domain is typically ~~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins%2C typically of the OsmY-type proteins. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94369.1;transl_table=11
AM406670.1	EMBL	gene	1919438	1920847	.	+	.	ID=gene1793;Name=cls2;gbkey=Gene;gene=cls2;gene_biotype=protein_coding;locus_tag=azo1753
AM406670.1	EMBL	CDS	1919438	1920847	.	+	0	ID=cds1751;Parent=gene1793;Dbxref=EnsemblGenomes-Gn:azo1753,EnsemblGenomes-Tr:CAL94370,GOA:A1K6B5,InterPro:IPR001736,InterPro:IPR025202,UniProtKB/TrEMBL:A1K6B5,NCBI_GP:CAL94370.1;Name=CAL94370.1;Note=Function:- Cardiolipin synthetase (CL synthase)%2Ccls. Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. Entry name :-SWISSPROT:CLS_ECOLI Prim. accession # P31071 InterPro:IPR001736%3B PLD. Identities %3D 114/379 (30%25) Pfam:PF00614%3B PLDc%3B 2. TMhelix%3D1 Signal peptide probability: 1.0%3B~Family membership;gbkey=CDS;gene=cls2;product=putative cardiolipin synthetase;protein_id=CAL94370.1;transl_table=11
AM406670.1	EMBL	gene	1920896	1921315	.	+	.	ID=gene1794;Name=azo1754;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1754
AM406670.1	EMBL	CDS	1920896	1921315	.	+	0	ID=cds1752;Parent=gene1794;Dbxref=EnsemblGenomes-Gn:azo1754,EnsemblGenomes-Tr:CAL94371,InterPro:IPR005265,UniProtKB/TrEMBL:A1K6B6,NCBI_GP:CAL94371.1;Name=CAL94371.1;Note=Conserved hypothetical membrane protein. Homology Avin02003871 of Azotobacter vinelandii of 47%25 (gi|53610588|ref|ZP_00089122.2|(NBCI ENTREZ)). Has PF03653%2C Uncharacterised protein family (UPF0093). Interpro: IPR005265%3B Cons_hypoth701%3B It appears the conserved hypothetical integral membrane proteins of this family are found only in gram negative bacteria and their function is unknown. Signal peptide. 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94371.1;transl_table=11
AM406670.1	EMBL	gene	1921312	1921959	.	-	.	ID=gene1795;Name=azo1755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1755
AM406670.1	EMBL	CDS	1921312	1921959	.	-	0	ID=cds1753;Parent=gene1795;Dbxref=EnsemblGenomes-Gn:azo1755,EnsemblGenomes-Tr:CAL94372,InterPro:IPR019251,UniProtKB/TrEMBL:A1K6B7,NCBI_GP:CAL94372.1;Name=CAL94372.1;Note=Conserved hypothetical membrane protein. Homology ebA159 of Azoarcus sp. EbN1 of 52%25 (gnl|keqq|eba:ebA159(KEGG)). No domains predicted. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94372.1;transl_table=11
AM406670.1	EMBL	gene	1922011	1922682	.	+	.	ID=gene1796;Name=qoxB;gbkey=Gene;gene=qoxB;gene_biotype=protein_coding;locus_tag=azo1756
AM406670.1	EMBL	CDS	1922011	1922682	.	+	0	ID=cds1754;Parent=gene1796;Dbxref=EnsemblGenomes-Gn:azo1756,EnsemblGenomes-Tr:CAL94373,GOA:A1K6B8,InterPro:IPR001505,InterPro:IPR002429,InterPro:IPR008972,InterPro:IPR014222,UniProtKB/TrEMBL:A1K6B8,NCBI_GP:CAL94373.1;Name=CAL94373.1;Note=Probable quniol oxidase%2C subunit II. Homology to qoxB of Rhodobacter sphaeroides of 41%25 (gi|4416093|gb|AAD20226.1|(NBCI ENTREZ)). InterPro: Cytochrome c oxidase subunit II (IPR002429)%3B Cu(A) centre of cytochrome c oxidase%2C subunit II and nitrous oxide reductase (IPR001505). Pfam: Cytochrome c oxidase subunit II%2C periplasmic. no signal peptide. 2 TMHs%3B~Family membership;gbkey=CDS;gene=qoxB;product=probable quniol oxidase%2C subunit II;protein_id=CAL94373.1;transl_table=11
AM406670.1	EMBL	gene	1922679	1925261	.	+	.	ID=gene1797;Name=qoxA;gbkey=Gene;gene=qoxA;gene_biotype=protein_coding;locus_tag=azo1757
AM406670.1	EMBL	CDS	1922679	1925261	.	+	0	ID=cds1755;Parent=gene1797;Dbxref=EnsemblGenomes-Gn:azo1757,EnsemblGenomes-Tr:CAL94374,GOA:A1K6B9,InterPro:IPR000298,InterPro:IPR000883,InterPro:IPR014241,InterPro:IPR023615,InterPro:IPR023616,UniProtKB/TrEMBL:A1K6B9,NCBI_GP:CAL94374.1;Name=CAL94374.1;Note=Probable quinol oxidase%2C subunit I. Homology to qoxA of R. sphaeroides of 52%25 (trembl|Q9Z605). InterPro: Cytochrome c oxidase subunit III (IPR000298)%3B Cytochrome coxidase%2C subunit I (IPR000883) Pfam: Cytochrom C and quinol oxidase poly polypeptide signal peptide 17 TMHs%3B~Family membership;gbkey=CDS;gene=qoxA;product=probable quinol oxidase%2C subunit I;protein_id=CAL94374.1;transl_table=11
AM406670.1	EMBL	gene	1925258	1925599	.	+	.	ID=gene1798;Name=azo1758;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1758
AM406670.1	EMBL	CDS	1925258	1925599	.	+	0	ID=cds1756;Parent=gene1798;Dbxref=EnsemblGenomes-Gn:azo1758,EnsemblGenomes-Tr:CAL94375,UniProtKB/TrEMBL:A1K6C0,NCBI_GP:CAL94375.1;Name=CAL94375.1;Note=Hypothetical membrane protein. no homology to the data bank. no domains predicted. no signal peptide. 3 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94375.1;transl_table=11
AM406670.1	EMBL	gene	1925590	1926420	.	+	.	ID=gene1799;Name=azo1759;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1759
AM406670.1	EMBL	CDS	1925590	1926420	.	+	0	ID=cds1757;Parent=gene1799;Dbxref=EnsemblGenomes-Gn:azo1759,EnsemblGenomes-Tr:CAL94376,InterPro:IPR019108,UniProtKB/TrEMBL:A1K6C1,NCBI_GP:CAL94376.1;Name=CAL94376.1;Note=Conserved hypothetical membrane protein. Homology to Avin02003353 of Azotobacter vinelandii of 48%25 (gi|53610930|ref|ZP_00342175.1|(NBCI ENTREZ)). No domains predicted. signal peptide. 7 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94376.1;transl_table=11
AM406670.1	EMBL	gene	1926417	1927421	.	+	.	ID=gene1800;Name=azo1760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1760
AM406670.1	EMBL	CDS	1926417	1927421	.	+	0	ID=cds1758;Parent=gene1800;Dbxref=EnsemblGenomes-Gn:azo1760,EnsemblGenomes-Tr:CAL94377,GOA:A1K6C2,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K6C2,NCBI_GP:CAL94377.1;Name=CAL94377.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8KUH7 (41%25 identity)%3B SWISSPROT:P14802 (30%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL94377.1;transl_table=11
AM406670.1	EMBL	gene	1927438	1931043	.	-	.	ID=gene1801;Name=azo1761;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1761
AM406670.1	EMBL	CDS	1927438	1931043	.	-	0	ID=cds1759;Parent=gene1801;Dbxref=EnsemblGenomes-Gn:azo1761,EnsemblGenomes-Tr:CAL94378,InterPro:IPR008023,UniProtKB/TrEMBL:A1K6C3,NCBI_GP:CAL94378.1;Name=CAL94378.1;Note=Hypothetical protein%2C Shares 45%25 similarity with hypothetical protein [Chromobacterium violaceum]TrEMBL Q7NY28. Signal Peptide present. No TMH's reported. Has pfam05359%2C DUF748%2C Domain of Unknown Function (DUF748).%3B~Specificity unclear;gbkey=CDS;product=hypothetical protein;protein_id=CAL94378.1;transl_table=11
AM406670.1	EMBL	gene	1931040	1932170	.	-	.	ID=gene1802;Name=azo1762;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1762
AM406670.1	EMBL	CDS	1931040	1932170	.	-	0	ID=cds1760;Parent=gene1802;Dbxref=EnsemblGenomes-Gn:azo1762,EnsemblGenomes-Tr:CAL94379,InterPro:IPR002549,UniProtKB/TrEMBL:A1K6C4,NCBI_GP:CAL94379.1;Name=CAL94379.1;Note=Conserved hypothetical membrane protein. Homology to XCC0079 of Xanthomonas campestris (trembl|Q8PEA2(SRS)). InterPro:IPR002549%3B UPF0118. Pfam PF01594%3B domain of DUF20 present. no signal peptide. 8 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94379.1;transl_table=11
AM406670.1	EMBL	gene	1932167	1933585	.	-	.	ID=gene1803;Name=mucD3;gbkey=Gene;gene=mucD3;gene_biotype=protein_coding;locus_tag=azo1763
AM406670.1	EMBL	CDS	1932167	1933585	.	-	0	ID=cds1761;Parent=gene1803;Dbxref=EnsemblGenomes-Gn:azo1763,EnsemblGenomes-Tr:CAL94380,GOA:A1K6C5,InterPro:IPR001478,InterPro:IPR001940,InterPro:IPR009003,UniProtKB/TrEMBL:A1K6C5,NCBI_GP:CAL94380.1;Name=CAL94380.1;Note=Probable serine protease MucD. Homology to mucD of P. aeruginosa of 40%25 (trembl|Q57155). InterPro: Serine proteases trypsin family (IPR001254)%3B Chymotrypsin serine protease family (S1) (IPR001314)%3B HtrA/DegQ protease family (IPR001940)%3B PDZ domain (also known as DHR or GLGF) (IPR001478) Pfam: Trypsin%3B PDZ domain (also known as DHR or GLGF) signal peptide no TMHs TIGR00292: thiazole biosynthesis enzyme%3B~High confidence in function and specificity;gbkey=CDS;gene=mucD3;product=probable serine protease MucD;protein_id=CAL94380.1;transl_table=11
AM406670.1	EMBL	gene	1933759	1934097	.	+	.	ID=gene1804;Name=azo1764;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1764
AM406670.1	EMBL	CDS	1933759	1934097	.	+	0	ID=cds1762;Parent=gene1804;Dbxref=EnsemblGenomes-Gn:azo1764,EnsemblGenomes-Tr:CAL94381,InterPro:IPR006311,InterPro:IPR007055,InterPro:IPR014004,UniProtKB/TrEMBL:A1K6C6,NCBI_GP:CAL94381.1;Name=CAL94381.1;Note=Conserved hypothetical secreted protein. Homology to bb3588 of B. bronchiseptica of 41%25 (trembl|Q7WGK1). Smart: Bacterial OsmY and nodulation domain (BON). The BON domain is typically ~~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins%2C typically of the OsmY-type proteins. signal peptide. TMH in signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94381.1;transl_table=11
AM406670.1	EMBL	gene	1934286	1934459	.	+	.	ID=gene1805;Name=azo1765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1765
AM406670.1	EMBL	CDS	1934286	1934459	.	+	0	ID=cds1763;Parent=gene1805;Dbxref=EnsemblGenomes-Gn:azo1765,EnsemblGenomes-Tr:CAL94382,GOA:A1K6C7,InterPro:IPR009760,NCBI_GP:CAL94382.1;Name=CAL94382.1;Note=Conserved hypothetical membrane protein. Homology to Atu4467 of Agrobacterium tumefaciens of 58%25 (trembl|Q8U7I2). Has PF07043%2C Protein of unknown function (DUF1328)%3BIPR009760%3BThis family consists of several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown. signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94382.1;transl_table=11
AM406670.1	EMBL	gene	1934490	1935986	.	-	.	ID=gene1806;Name=ndh1;gbkey=Gene;gene=ndh1;gene_biotype=protein_coding;locus_tag=azo1766
AM406670.1	EMBL	CDS	1934490	1935986	.	-	0	ID=cds1764;Parent=gene1806;Dbxref=EnsemblGenomes-Gn:azo1766,EnsemblGenomes-Tr:CAL94383,GOA:A1K6C8,InterPro:IPR001327,InterPro:IPR013027,InterPro:IPR023753,UniProtKB/TrEMBL:A1K6C8,NCBI_GP:CAL94383.1;Name=CAL94383.1;Note=Probable NADH dehydrogenase. Homology to ndh of P. fluorescens of 48%25 (trembl|Q9KGX0). TRANSFER OF ELECTRONS FROM NADH TO THE RESPIRATORY CHAIN. THE IMMEDIATE ELECTRON ACCEPTOR FOR THE ENZYME IS BELIEVED TO BE UBIQUINONE. DOES NOT COUPLE THE REDOX REACTION TO PROTON TRANSLOCATION. Interpro: FAD-dependent pyridine nucleotide-dislphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disluphide oxidoreductase no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=ndh1;product=probable NADH dehydrogenase;protein_id=CAL94383.1;transl_table=11
AM406670.1	EMBL	gene	1936009	1936383	.	-	.	ID=gene1807;Name=azo1767;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1767
AM406670.1	EMBL	CDS	1936009	1936383	.	-	0	ID=cds1765;Parent=gene1807;Dbxref=EnsemblGenomes-Gn:azo1767,EnsemblGenomes-Tr:CAL94384,InterPro:IPR009794,UniProtKB/TrEMBL:A1K6C9,NCBI_GP:CAL94384.1;Name=CAL94384.1;Note=Conserved hypothetical protein. Homology to an orf of Polyangium cellulosum of 69%25 (tremble:Q9L8D1). Has PF07100%3B(IPR009794)Protein of unknown function (DUF1362)%3BThis family consists of several hypothetical bacterial proteins of around 125 resides in length. The function of this family is unknown. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94384.1;transl_table=11
AM406670.1	EMBL	gene	1936817	1937137	.	+	.	ID=gene1808;Name=azo1768;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1768
AM406670.1	EMBL	CDS	1936817	1937137	.	+	0	ID=cds1766;Parent=gene1808;Dbxref=EnsemblGenomes-Gn:azo1768,EnsemblGenomes-Tr:CAL94385,UniProtKB/TrEMBL:A1K6D0,NCBI_GP:CAL94385.1;Name=CAL94385.1;Note=Hypothetical membrane protein. no homology of the entire protein to the data bank. no domains predicted no signal peptide 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94385.1;transl_table=11
AM406670.1	EMBL	gene	1937286	1938023	.	-	.	ID=gene1809;Name=azo1769;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1769
AM406670.1	EMBL	CDS	1937286	1938023	.	-	0	ID=cds1767;Parent=gene1809;Dbxref=EnsemblGenomes-Gn:azo1769,EnsemblGenomes-Tr:CAL94386,UniProtKB/TrEMBL:A1K6D1,NCBI_GP:CAL94386.1;Name=CAL94386.1;Note=Conserved hypothetical protein. Weak homology with hits in the database. Coils2 program predicts presence of coiled coil.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94386.1;transl_table=11
AM406670.1	EMBL	gene	1938484	1938891	.	+	.	ID=gene1810;Name=azo1770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1770
AM406670.1	EMBL	CDS	1938484	1938891	.	+	0	ID=cds1768;Parent=gene1810;Dbxref=EnsemblGenomes-Gn:azo1770,EnsemblGenomes-Tr:CAL94387,GOA:A1K6D2,InterPro:IPR000962,UniProtKB/TrEMBL:A1K6D2,NCBI_GP:CAL94387.1;Name=CAL94387.1;Note=Conserved hypothetical DnaK suppressor protein. Homology to BPSS2280 of Burkholderia pseudomallei of 34%25 (gnl|keqq|bps:BPSS2280(KEGG). Has PF01258%2C Prokaryotic dksA/traR C4-type zinc finger%3B IPR000962 Znf_DskA/TraR%3B The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout and deletion experiments have shown the gene to be non-essential%2C mutations causing a mild sensitivity to UV light%2C but not affecting DNA recombination. The protein contains a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar domain include the traR gene product%2C present on the conjugative plasmid F%2Cand several hypothetical proteins from bacteria and bacteriophages. No TMHs. No signal peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical DnaK suppressor protein;protein_id=CAL94387.1;transl_table=11
AM406670.1	EMBL	gene	1938905	1940323	.	+	.	ID=gene1811;Name=cioA;gbkey=Gene;gene=cioA;gene_biotype=protein_coding;locus_tag=azo1771
AM406670.1	EMBL	CDS	1938905	1940323	.	+	0	ID=cds1769;Parent=gene1811;Dbxref=EnsemblGenomes-Gn:azo1771,EnsemblGenomes-Tr:CAL94388,GOA:A1K6D3,InterPro:IPR002585,UniProtKB/TrEMBL:A1K6D3,NCBI_GP:CAL94388.1;Name=CAL94388.1;Note=Probable cyanide insensitive terminal oxidase%2Csubunit I Homology to cioA of P. aeruginose of 44%25 (TREMBL:O07440) InterPro: Cytochrome bd ubiquinol oxidase subunit I (IPR002585) Pfam: Bacterial cytochrome ubiquinol oxidase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=cioA;product=probable cyanide insensitive terminal oxidase%2Csubunit I;protein_id=CAL94388.1;transl_table=11
AM406670.1	EMBL	gene	1940316	1941338	.	+	.	ID=gene1812;Name=cioB;gbkey=Gene;gene=cioB;gene_biotype=protein_coding;locus_tag=azo1772
AM406670.1	EMBL	CDS	1940316	1941338	.	+	0	ID=cds1770;Parent=gene1812;Dbxref=EnsemblGenomes-Gn:azo1772,EnsemblGenomes-Tr:CAL94389,GOA:A1K6D4,InterPro:IPR003317,UniProtKB/TrEMBL:A1K6D4,NCBI_GP:CAL94389.1;Name=CAL94389.1;Note=Probable cyanide insensitive terminal oxidase%2Csubunit II. Homology to cioB of P. aeruginosa of 40%25 (trembl|O07441). Tigrfam: cydB: cytochrome d ubiquinol oxidase%2C subunit II Pfam: cytochrome oxidase%2C subunit II no signal peptide 8 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=cioB;product=probable cyanide insensitive terminal oxidase%2Csubunit II;protein_id=CAL94389.1;transl_table=11
AM406670.1	EMBL	gene	1941818	1942150	.	+	.	ID=gene1813;Name=azo1773;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1773
AM406670.1	EMBL	CDS	1941818	1942150	.	+	0	ID=cds1771;Parent=gene1813;Dbxref=EnsemblGenomes-Gn:azo1773,EnsemblGenomes-Tr:CAL94390,InterPro:IPR005560,UniProtKB/TrEMBL:A1K6D5,NCBI_GP:CAL94390.1;Name=CAL94390.1;Note=Conserved hypothetical protein. Homology to an orf of P. putida of 58%25 (trembl|O68643). no TMHs. no signal peptide. No domains predicted.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94390.1;transl_table=11
AM406670.1	EMBL	gene	1942244	1943044	.	+	.	ID=gene1814;Name=azo1774;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1774
AM406670.1	EMBL	CDS	1942244	1943044	.	+	0	ID=cds1772;Parent=gene1814;Dbxref=EnsemblGenomes-Gn:azo1774,EnsemblGenomes-Tr:CAL94391,UniProtKB/TrEMBL:A1K6D6,NCBI_GP:CAL94391.1;Name=CAL94391.1;Note=Conserved hypothetical protein. Homology to Avin02003958 of Azotobacter vinelandii of 38%25 (gi|53610498|ref|ZP_00089565.2|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94391.1;transl_table=11
AM406670.1	EMBL	gene	1943128	1943709	.	-	.	ID=gene1815;Name=azo1775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1775
AM406670.1	EMBL	CDS	1943128	1943709	.	-	0	ID=cds1773;Parent=gene1815;Dbxref=EnsemblGenomes-Gn:azo1775,EnsemblGenomes-Tr:CAL94392,UniProtKB/TrEMBL:A1K6D7,NCBI_GP:CAL94392.1;Name=CAL94392.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94392.1;transl_table=11
AM406670.1	EMBL	gene	1943822	1944037	.	+	.	ID=gene1816;Name=azo1776;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1776
AM406670.1	EMBL	CDS	1943822	1944037	.	+	0	ID=cds1774;Parent=gene1816;Dbxref=EnsemblGenomes-Gn:azo1776,EnsemblGenomes-Tr:CAL94393,UniProtKB/TrEMBL:A1K6D8,NCBI_GP:CAL94393.1;Name=CAL94393.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL94393.1;transl_table=11
AM406670.1	EMBL	gene	1944084	1945133	.	+	.	ID=gene1817;Name=azo1777;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1777
AM406670.1	EMBL	CDS	1944084	1945133	.	+	0	ID=cds1775;Parent=gene1817;Dbxref=EnsemblGenomes-Gn:azo1777,EnsemblGenomes-Tr:CAL94394,GOA:A1K6D9,InterPro:IPR000792,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K6D9,NCBI_GP:CAL94394.1;Name=CAL94394.1;Note=Hypothetical LuxR-family transcriptional regulator. Similarity to other known proteins (dctR or narP or esaR) only in the domain part. Pfam: PF00196 Bacterial regulatory proteins%2C luxR family. HTH reporting nucleic acid binding motif. The 'helix-turn-helix' DNA-binding motif of this protein is located in the C-terminal section of the sequence.%3B~Conserved hypothetical protein;gbkey=CDS;product=hypothetical LuxR-family transcriptional regulator;protein_id=CAL94394.1;transl_table=11
AM406670.1	EMBL	gene	1945382	1945816	.	+	.	ID=gene1818;Name=azo1778;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1778
AM406670.1	EMBL	CDS	1945382	1945816	.	+	0	ID=cds1776;Parent=gene1818;Dbxref=EnsemblGenomes-Gn:azo1778,EnsemblGenomes-Tr:CAL94395,UniProtKB/TrEMBL:A1K6E0,NCBI_GP:CAL94395.1;Name=CAL94395.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 3 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94395.1;transl_table=11
AM406670.1	EMBL	gene	1945848	1946708	.	+	.	ID=gene1819;Name=ampD1;gbkey=Gene;gene=ampD1;gene_biotype=protein_coding;locus_tag=azo1779
AM406670.1	EMBL	CDS	1945848	1946708	.	+	0	ID=cds1777;Parent=gene1819;Dbxref=EnsemblGenomes-Gn:azo1779,EnsemblGenomes-Tr:CAL94396,GOA:A1K6E1,InterPro:IPR002502,InterPro:IPR003646,UniProtKB/TrEMBL:A1K6E1,NCBI_GP:CAL94396.1;Name=CAL94396.1;Note=This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). InterPro (IPR002502): N-acetylmuramoyl-L-alanine amidase (family 2). Pfam (PF01510): N-acetylmuramoyl-L-alanine amidase.%3B~Family membership;gbkey=CDS;gene=ampD1;product=N-acetylmuramoyl-L-alanine amidase;protein_id=CAL94396.1;transl_table=11
AM406670.1	EMBL	gene	1946826	1947452	.	+	.	ID=gene1820;Name=azo1780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1780
AM406670.1	EMBL	CDS	1946826	1947452	.	+	0	ID=cds1778;Parent=gene1820;Dbxref=EnsemblGenomes-Gn:azo1780,EnsemblGenomes-Tr:CAL94397,InterPro:IPR002477,UniProtKB/TrEMBL:A1K6E2,NCBI_GP:CAL94397.1;Name=CAL94397.1;Note=Hypothetical protein. no homology of the entire protein to the data bank InterPro: Putative peptidoglycan binding domain 1 (IPR002477) Pfam: Putative peptidoglycan binding domain 1 no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein;protein_id=CAL94397.1;transl_table=11
AM406670.1	EMBL	gene	1948908	1949294	.	-	.	ID=gene1821;Name=azo1781;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1781
AM406670.1	EMBL	CDS	1948908	1949294	.	-	0	ID=cds1779;Parent=gene1821;Dbxref=EnsemblGenomes-Gn:azo1781,EnsemblGenomes-Tr:CAL94398,InterPro:IPR009317,UniProtKB/TrEMBL:A1K6E3,NCBI_GP:CAL94398.1;Name=CAL94398.1;Note=Conserved hypothetical protein. Homology to map2952a of M. paratuberculosis of 51%25 (AAS05269). Pfam: CahB%3B Rho terminator factor%2C N-terminal. domain no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94398.1;transl_table=11
AM406670.1	EMBL	gene	1949308	1950150	.	-	.	ID=gene1822;Name=azo1782;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1782
AM406670.1	EMBL	CDS	1949308	1950150	.	-	0	ID=cds1780;Parent=gene1822;Dbxref=EnsemblGenomes-Gn:azo1782,EnsemblGenomes-Tr:CAL94399,GOA:A1K6E4,InterPro:IPR005135,InterPro:IPR027317,UniProtKB/TrEMBL:A1K6E4,NCBI_GP:CAL94399.1;Name=CAL94399.1;Note=Conserved hypothetical protein. Homology to mlr2853 of M. loti of 31%25 (trembl|Q98HI7). Tigrfam: xth: exodeoxyribonuclease III (xth). All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA. Pfam: AP endonuclease family I. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94399.1;transl_table=11
AM406670.1	EMBL	gene	1950122	1952401	.	-	.	ID=gene1823;Name=azo1783;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1783
AM406670.1	EMBL	CDS	1950122	1952401	.	-	0	ID=cds1781;Parent=gene1823;Dbxref=EnsemblGenomes-Gn:azo1783,EnsemblGenomes-Tr:CAL94400,GOA:A1K6E5,InterPro:IPR001736,InterPro:IPR015414,InterPro:IPR015679,InterPro:IPR025202,UniProtKB/TrEMBL:A1K6E5,NCBI_GP:CAL94400.1;Name=CAL94400.1;Note=Conserved hypothetical membrane protein. Homology to ebA6946 of Azoarcus sp. EbN1 of 64%25 (gnl|keqq|eba:ebA6946(KEGG)). Pfam: Pospholipase D%2C active site motife%3B DedA family. no signal peptide. 6 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94400.1;transl_table=11
AM406670.1	EMBL	gene	1952414	1952968	.	-	.	ID=gene1824;Name=bfr3;gbkey=Gene;gene=bfr3;gene_biotype=protein_coding;locus_tag=azo1784
AM406670.1	EMBL	CDS	1952414	1952968	.	-	0	ID=cds1782;Parent=gene1824;Dbxref=EnsemblGenomes-Gn:azo1784,EnsemblGenomes-Tr:CAL94401,GOA:A1K6E6,InterPro:IPR008331,InterPro:IPR009040,InterPro:IPR009078,InterPro:IPR012347,InterPro:IPR014490,UniProtKB/TrEMBL:A1K6E6,NCBI_GP:CAL94401.1;Name=CAL94401.1;Note=Bacterioferritin (BFR) (Cytochrome B-1) (Cytochrome B-557). In E. coli is an iron-storage protein consisting of 24 identical subunits that pack together to form a highly symmetrical%2C nearly spherical shell surrounding a central cavity of about 8 nm diameter.X-ray crystallographic studies have revealed a close structural similarity between BFR and the ferritins%2C a family of iron-storage proteins found in both eukaryota and prokaryota. Key role in iron homeostasis.InterPro: Bacterioferritin. Non-secretory protein bfr: bacterioferritin%3B~High confidence in function and specificity;gbkey=CDS;gene=bfr3;product=putative bacterioferritin;protein_id=CAL94401.1;transl_table=11
AM406670.1	EMBL	gene	1953247	1954419	.	+	.	ID=gene1825;Name=azo1785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1785
AM406670.1	EMBL	CDS	1953247	1954419	.	+	0	ID=cds1783;Parent=gene1825;Dbxref=EnsemblGenomes-Gn:azo1785,EnsemblGenomes-Tr:CAL94402,GOA:A1K6E7,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:A1K6E7,NCBI_GP:CAL94402.1;Name=CAL94402.1;Note=InterPro: Glycosyl transferases group 1%3B~Family membership;gbkey=CDS;product=glycosyltransferase;protein_id=CAL94402.1;transl_table=11
AM406670.1	EMBL	gene	1954400	1954948	.	+	.	ID=gene1826;Name=azo1786;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1786
AM406670.1	EMBL	CDS	1954400	1954948	.	+	0	ID=cds1784;Parent=gene1826;Dbxref=EnsemblGenomes-Gn:azo1786,EnsemblGenomes-Tr:CAL94403,GOA:A1K6E8,InterPro:IPR000326,UniProtKB/TrEMBL:A1K6E8,NCBI_GP:CAL94403.1;Name=CAL94403.1;Note=Conserved hypothetical phosphoesterase family protein. Homology to ebA6940 of Azoarcus sp. EbN1 of 65%25 (gnl|keqq|eba:ebA6940(KEGG)). InterPro IPR008934%3B AcPase_VanPerase. IPR000326%3B PA_PTPase. Pfam PF01569%3B PAP2%3B Number of predicted TMHs: 3#. Prediction: Non-secretory protein Signal peptide probability: 0.000%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical phosphoesterase family protein;protein_id=CAL94403.1;transl_table=11
AM406670.1	EMBL	gene	1954864	1955775	.	-	.	ID=gene1827;Name=azo1787;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1787
AM406670.1	EMBL	CDS	1954864	1955775	.	-	0	ID=cds1785;Parent=gene1827;Dbxref=EnsemblGenomes-Gn:azo1787,EnsemblGenomes-Tr:CAL94404,GOA:A1K6E9,InterPro:IPR011330,UniProtKB/TrEMBL:A1K6E9,NCBI_GP:CAL94404.1;Name=CAL94404.1;Note=TIGR00093: conserved hypothetical protein%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94404.1;transl_table=11
AM406670.1	EMBL	gene	1955772	1956905	.	-	.	ID=gene1828;Name=azo1788;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1788
AM406670.1	EMBL	CDS	1955772	1956905	.	-	0	ID=cds1786;Parent=gene1828;Dbxref=EnsemblGenomes-Gn:azo1788,EnsemblGenomes-Tr:CAL94405,GOA:A1K6F0,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:A1K6F0,NCBI_GP:CAL94405.1;Name=CAL94405.1;Note=InterPro: Glycosyl transferases group 1%3B~Family membership;gbkey=CDS;product=glycosyltransferase;protein_id=CAL94405.1;transl_table=11
AM406670.1	EMBL	gene	1957010	1957564	.	-	.	ID=gene1829;Name=azo1789;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1789
AM406670.1	EMBL	CDS	1957010	1957564	.	-	0	ID=cds1787;Parent=gene1829;Dbxref=EnsemblGenomes-Gn:azo1789,EnsemblGenomes-Tr:CAL94406,UniProtKB/TrEMBL:A1K6F1,NCBI_GP:CAL94406.1;Name=CAL94406.1;Note=Conserved hypothetical protein. Homology to bp0770 of B. pertussis of 37%25 (TrEMBL:Q7VZW1). no domains reported. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94406.1;transl_table=11
AM406670.1	EMBL	gene	1957602	1959068	.	-	.	ID=gene1830;Name=rpoN2;gbkey=Gene;gene=rpoN2;gene_biotype=protein_coding;locus_tag=azo1790
AM406670.1	EMBL	CDS	1957602	1959068	.	-	0	ID=cds1788;Parent=gene1830;Dbxref=EnsemblGenomes-Gn:azo1790,EnsemblGenomes-Tr:CAL94407,GOA:A1K6F2,InterPro:IPR000394,InterPro:IPR007046,InterPro:IPR007634,UniProtKB/TrEMBL:A1K6F2,NCBI_GP:CAL94407.1;Name=CAL94407.1;Note=RNA polymerase sigma-54 factor. The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. Similar to SWISSPROT: sprot|RP54_ALCEU (46%25 Alcaligenes eutrophus (Ralstonia eutropha)%2C RpoN or NtrA) / sprot|RP54_ECOLI (41%25 Escherichia coli%2C RpoN or NtrA) Pfam:PF00309 Sigma54_AID. PF04963 Sigma54_CBD. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpoN2;product=RNA polymerase sigma-54 factor;protein_id=CAL94407.1;transl_table=11
AM406670.1	EMBL	gene	1959413	1960084	.	+	.	ID=gene1831;Name=azo1791;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1791
AM406670.1	EMBL	CDS	1959413	1960084	.	+	0	ID=cds1789;Parent=gene1831;Dbxref=EnsemblGenomes-Gn:azo1791,EnsemblGenomes-Tr:CAL94408,InterPro:IPR012347,InterPro:IPR025419,UniProtKB/TrEMBL:A1K6F3,NCBI_GP:CAL94408.1;Name=CAL94408.1;Note=Conserved hypothetical secreted protein. Homology to ebA6930 of Azoarcus sp. EbN1 of 37%25 (gnl|keqq|eba:ebA6930(KEGG)). No domains predicted. Signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94408.1;transl_table=11
AM406670.1	EMBL	gene	1960085	1961215	.	+	.	ID=gene1832;Name=azo1792;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1792
AM406670.1	EMBL	CDS	1960085	1961215	.	+	0	ID=cds1790;Parent=gene1832;Dbxref=EnsemblGenomes-Gn:azo1792,EnsemblGenomes-Tr:CAL94409,GOA:A1K6F4,InterPro:IPR006685,InterPro:IPR010920,UniProtKB/TrEMBL:A1K6F4,NCBI_GP:CAL94409.1;Name=CAL94409.1;Note=Conserved hypothetical membrane protein. Homology to xcc0923 of X. campestris of 46%25 (trembl|Q8PC30). InterPro: Uncharacterized protein family UPF0003 (IPR006685). Pfam: Mechanosensitive ion chanell. Mechanosensitive (MS) channels provide protection against hypo-osmotic shock%2C responding both to stretching of the cell membrane and to membrane depolarisation. no signal peptide. 5 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94409.1;transl_table=11
AM406670.1	EMBL	gene	1961212	1962507	.	+	.	ID=gene1833;Name=azo1793;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1793
AM406670.1	EMBL	CDS	1961212	1962507	.	+	0	ID=cds1791;Parent=gene1833;Dbxref=EnsemblGenomes-Gn:azo1793,EnsemblGenomes-Tr:CAL94410,InterPro:IPR011201,UniProtKB/TrEMBL:A1K6F5,NCBI_GP:CAL94410.1;Name=CAL94410.1;Note=Conserved hypothetical protein.Weak Homology with Hits in the Database. Has IPR000967 Znf_NFX1%3B(SMART%3BSM00438)This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C%2C where X can be any amino acid%2C and numbers in brackets indicate the number of residues. The two position can be either his or cys. This domain is found in the human transcriptional repressor NK-X1%2C a repressor of HLA-DRA transcription%3B the Drosophila shuttle craft protein%2C which plays an essential role during the late stages of embryonic neurogenesis%3B and a yeast hypothetical protein YNL023C. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94410.1;transl_table=11
AM406670.1	EMBL	gene	1962504	1964684	.	+	.	ID=gene1834;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=protein_coding;locus_tag=azo1794
AM406670.1	EMBL	CDS	1962504	1964684	.	+	0	ID=cds1792;Parent=gene1834;Dbxref=EnsemblGenomes-Gn:azo1794,EnsemblGenomes-Tr:CAL94411,GOA:A1K6F6,InterPro:IPR004193,InterPro:IPR006047,InterPro:IPR011837,InterPro:IPR013780,InterPro:IPR013781,InterPro:IPR013783,InterPro:IPR014756,InterPro:IPR015902,InterPro:IPR017853,UniProtKB/TrEMBL:A1K6F6,NCBI_GP:CAL94411.1;Name=CAL94411.1;Note=Glycogen operon protein GlgX homolog.Hydrolyzes the alpha-1%2C6-glucosidic linkages in glycogen which has first been partially depolymerized by phosphorylase. Shows only very little activity with native glycogen. 46%25 Alpha_amyl_cat.IPR004193%3B Glyco_hydro_13N. Pfam:PF00128%3B alpha-amylase%3B 1.F02922%3B isoamylase_N%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=glgX;product=putative glycogen debranching enzyme;protein_id=CAL94411.1;transl_table=11
AM406670.1	EMBL	gene	1964688	1965785	.	+	.	ID=gene1835;Name=azo1795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1795
AM406670.1	EMBL	CDS	1964688	1965785	.	+	0	ID=cds1793;Parent=gene1835;Dbxref=EnsemblGenomes-Gn:azo1795,EnsemblGenomes-Tr:CAL94412,GOA:A1K6F7,InterPro:IPR001631,InterPro:IPR011010,InterPro:IPR013500,InterPro:IPR014711,InterPro:IPR027362,UniProtKB/TrEMBL:A1K6F7,NCBI_GP:CAL94412.1;Name=CAL94412.1;Note=DNA topoisomerase I (EC 5.99.1.2). The reaction catalyzed by topoisomerases leads to the conversion of one topological isomer of DNA to another. cbiB: cobalamin biosynthesis protein.%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94412.1;transl_table=11
AM406670.1	EMBL	gene	1965782	1967599	.	+	.	ID=gene1836;Name=glgB2;gbkey=Gene;gene=glgB2;gene_biotype=protein_coding;locus_tag=azo1796
AM406670.1	EMBL	CDS	1965782	1967599	.	+	0	ID=cds1794;Parent=gene1836;Dbxref=EnsemblGenomes-Gn:azo1796,EnsemblGenomes-Tr:CAL94413,GOA:A1K6F8,InterPro:IPR004193,InterPro:IPR006047,InterPro:IPR006048,InterPro:IPR006407,InterPro:IPR013780,InterPro:IPR013781,InterPro:IPR013783,InterPro:IPR015902,InterPro:IPR017853,UniProtKB/TrEMBL:A1K6F8,NCBI_GP:CAL94413.1;Name=CAL94413.1;Note=14-alpha-glucan branching enzyme (Glycogen branching enzyme)(BE) (14-alpha-D-glucan:14-alpha-D-glucan 6-glucosyl- transferase). Catalyzes the formation of the alpha-16-glucosidic linkages in glycogen by scission of a 14-alpha-linked oligosaccharide from growing alpha-14-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-16 position. 36%25 Alpha_amyl_cat.IPR006407%3BGlgB.IPR004193%3BGlyco_hydro_13N. Pfam:PF00128%3B Alpha-amylase%3B 1.PF02922%3B Isoamylase_N%3B 1. TIGRFAMs:TIGR01515%3B branching_enzym%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=glgB2;product=putative 1%2C4-alpha-glucan branching enzyme;protein_id=CAL94413.1;transl_table=11
AM406670.1	EMBL	gene	1967706	1968920	.	+	.	ID=gene1837;Name=glgC;gbkey=Gene;gene=glgC;gene_biotype=protein_coding;locus_tag=azo1797
AM406670.1	EMBL	CDS	1967706	1968920	.	+	0	ID=cds1795;Parent=gene1837;Dbxref=EnsemblGenomes-Gn:azo1797,EnsemblGenomes-Tr:CAL94414,GOA:A1K6F9,InterPro:IPR005835,InterPro:IPR005836,InterPro:IPR011004,InterPro:IPR023049,InterPro:IPR029044,NCBI_GP:CAL94414.1;Name=CAL94414.1;Note=Glucose-1-phosphate adenylyltransferase(ADP-glucose synthase)(ADP-glucose pyrophosphorylase)(ADPGlc PPase). 42%25 ADP_Glu_pyroP.IPR005835%3B NTP_transferase. Pfam:PF00483%3B NTP_transferase%3B 1. TIGR:MT1251.%3B~High confidence in function and specificity;gbkey=CDS;gene=glgC;product=putative glucose-1-phosphate adenylyltransferase;protein_id=CAL94414.1;transl_table=11
AM406670.1	EMBL	gene	1968917	1970977	.	+	.	ID=gene1838;Name=treZ;gbkey=Gene;gene=treZ;gene_biotype=protein_coding;locus_tag=azo1798
AM406670.1	EMBL	CDS	1968917	1970977	.	+	0	ID=cds1796;Parent=gene1838;Dbxref=EnsemblGenomes-Gn:azo1798,EnsemblGenomes-Tr:CAL94415,GOA:A1K6G0,InterPro:IPR004193,InterPro:IPR006047,InterPro:IPR012768,InterPro:IPR013781,InterPro:IPR013783,InterPro:IPR014756,InterPro:IPR015902,InterPro:IPR017853,InterPro:IPR022567,UniProtKB/TrEMBL:A1K6G0,NCBI_GP:CAL94415.1;Name=CAL94415.1;Note=Malto-oligosyltrehalose trehalohydrolase(MTHase) (4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase) (Maltooligosyl trehalose trehalohydrolase).Involved in the trehalose biosynthesis%2Chydrolysing alpha-(1->4)-d-glucosidic linkage in 4-alpha-d-{(1->4)-alpha-d-glucanosyl}(n) trehalose to yield trehalose and alpha-(1->4)-d-glucan. 42%25 Alpha_amyl_cat.IPR004193%3B Glyco_hydro_13N. Pfam:PF00128%3B alpha-amylase%3B 1.PF02922%3B isoamylase_N%3B 1.%3B~Specificity unclear;gbkey=CDS;gene=treZ;product=putative Malto-oligosyltrehalose trehalohydrolase;protein_id=CAL94415.1;transl_table=11
AM406670.1	EMBL	gene	1971003	1976207	.	+	.	ID=gene1839;Name=azo1799;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1799
AM406670.1	EMBL	CDS	1971003	1976207	.	+	0	ID=cds1797;Parent=gene1839;Dbxref=EnsemblGenomes-Gn:azo1799,EnsemblGenomes-Tr:CAL94416,GOA:A1K6G1,InterPro:IPR003385,InterPro:IPR006047,InterPro:IPR012767,InterPro:IPR013781,InterPro:IPR013797,InterPro:IPR015902,InterPro:IPR017853,UniProtKB/TrEMBL:A1K6G1,NCBI_GP:CAL94416.1;Name=CAL94416.1;Note=The first part of the protein (2202 bases) is 37%25 Glyco_hydro_77. Pfam:PF02446%3B 4A_glucanotrans%3B 1.TIGRFAMs:TIGR00217%3B malQ%3B 1. GO:5975/4134. The second part of the protein (from the base 2128 to the end) is 39%25%3B~Function unclear%3B~ORF5;gbkey=CDS;product=hypothetical protein;protein_id=CAL94416.1;transl_table=11
AM406670.1	EMBL	gene	1976211	1977182	.	-	.	ID=gene1840;Name=glk1;gbkey=Gene;gene=glk1;gene_biotype=protein_coding;locus_tag=azo1800
AM406670.1	EMBL	CDS	1976211	1977182	.	-	0	ID=cds1798;Parent=gene1840;Dbxref=EnsemblGenomes-Gn:azo1800,EnsemblGenomes-Tr:CAL94417,GOA:A1K6G2,InterPro:IPR003836,UniProtKB/TrEMBL:A1K6G2,NCBI_GP:CAL94417.1;Name=CAL94417.1;Note=Glucokinase (EC 2.7.1.2) (Glucose kinase). Catalytic activity: ATP + d-glucose %3D ADP+ d-glucose 6-phosphate. 34%25 Glucokinase. Pfam:PF02685%3B Glucokinase%3B 1. TIGRFAMs:TIGR00749%3B glk%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=glk1;product=putative glucokinase;protein_id=CAL94417.1;transl_table=11
AM406670.1	EMBL	gene	1977251	1978927	.	+	.	ID=gene1841;Name=glgA;gbkey=Gene;gene=glgA;gene_biotype=protein_coding;locus_tag=azo1801
AM406670.1	EMBL	CDS	1977251	1978927	.	+	0	ID=cds1799;Parent=gene1841;Dbxref=EnsemblGenomes-Gn:azo1801,EnsemblGenomes-Tr:CAL94418,GOA:A1K6G3,InterPro:IPR001296,InterPro:IPR011835,InterPro:IPR013534,UniProtKB/TrEMBL:A1K6G3,NCBI_GP:CAL94418.1;Name=CAL94418.1;Note=Glycogen synthase (Starch [bacterial glycogen] synthase) GlgA. Synthesizes alpha-14-glucan chains using ADP-glucose. 46%25 Glyco_trans_1. Pfam:PF00534%3B Glycos_transf_1%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=glgA;product=putative glycogen synthase;protein_id=CAL94418.1;transl_table=11
AM406670.1	EMBL	gene	1978903	1979856	.	-	.	ID=gene1842;Name=azo1802;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1802
AM406670.1	EMBL	CDS	1978903	1979856	.	-	0	ID=cds1800;Parent=gene1842;Dbxref=EnsemblGenomes-Gn:azo1802,EnsemblGenomes-Tr:CAL94419,GOA:A1K6G4,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:A1K6G4,NCBI_GP:CAL94419.1;Name=CAL94419.1;Note=67%25 Epimerase_Dh. Pfam: PF01370%3B Epimerase%3B 1. No signal peptide.%3B~Family membership;gbkey=CDS;product=putative dTDP-glucose 4%2C6-dehydratase;protein_id=CAL94419.1;transl_table=11
AM406670.1	EMBL	gene	1979858	1980823	.	-	.	ID=gene1843;Name=azo1803;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1803
AM406670.1	EMBL	CDS	1979858	1980823	.	-	0	ID=cds1801;Parent=gene1843;Dbxref=EnsemblGenomes-Gn:azo1803,EnsemblGenomes-Tr:CAL94420,GOA:A1K6G5,InterPro:IPR001296,UniProtKB/TrEMBL:A1K6G5,NCBI_GP:CAL94420.1;Name=CAL94420.1;Note=Conserved hypothetical glycosyltransferase. Homology to ebA6914 of Azoarcus sp. EbN1 of 72%25 (gnl|keqq|eba:ebA6914(KEGG)). Pfam: Glycos_transf_1. Interpro: Glycosyl transferase%2C group 1. Proteins containign this domain transfer UDP%2C ADP%2C GDP or CMP linked sugars to a variety of substrates%2C including glycogen%2C fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis%2Clipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. No signal peptide. No TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical glycosyltransferase;protein_id=CAL94420.1;transl_table=11
AM406670.1	EMBL	gene	1980849	1981829	.	-	.	ID=gene1844;Name=azo1804;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1804
AM406670.1	EMBL	CDS	1980849	1981829	.	-	0	ID=cds1802;Parent=gene1844;Dbxref=EnsemblGenomes-Gn:azo1804,EnsemblGenomes-Tr:CAL94421,GOA:A1K6G6,InterPro:IPR001173,InterPro:IPR019290,InterPro:IPR029044,UniProtKB/TrEMBL:A1K6G6,NCBI_GP:CAL94421.1;Name=CAL94421.1;Note=Hypothetical 55.3 kDa protein in thcA 5region (ORF1).%3B~High confidence in function and specificity;gbkey=CDS;product=membrane-anchored glycosyltransferase;protein_id=CAL94421.1;transl_table=11
AM406670.1	EMBL	gene	1981826	1983562	.	-	.	ID=gene1845;Name=azo1805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1805
AM406670.1	EMBL	CDS	1981826	1983562	.	-	0	ID=cds1803;Parent=gene1845;Dbxref=EnsemblGenomes-Gn:azo1805,EnsemblGenomes-Tr:CAL94422,GOA:A1K6G7,InterPro:IPR003696,UniProtKB/TrEMBL:A1K6G7,NCBI_GP:CAL94422.1;Name=CAL94422.1;Note=Hypothetical conserved hypothetical cabamoyltransferase. Homology to sco6480 of S. coelicolor of 49%25 (trembl|Q8CJN9). Pfam: Carbamyltransferase. no signal peptide. no TMHS%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical carbamoyltransferase;protein_id=CAL94422.1;transl_table=11
AM406670.1	EMBL	gene	1983567	1984781	.	-	.	ID=gene1846;Name=waaF1;gbkey=Gene;gene=waaF1;gene_biotype=protein_coding;locus_tag=azo1806
AM406670.1	EMBL	CDS	1983567	1984781	.	-	0	ID=cds1804;Parent=gene1846;Dbxref=EnsemblGenomes-Gn:azo1806,EnsemblGenomes-Tr:CAL94423,GOA:A1K6G8,InterPro:IPR002201,UniProtKB/TrEMBL:A1K6G8,NCBI_GP:CAL94423.1;Name=CAL94423.1;Note=ADP-heptose--LPS heptosyltransferase II (EC 2.-.-.-). pdxJ: pyridoxal phosphate biosynthetic%3B~High confidence in function and specificity;gbkey=CDS;gene=waaF1;product=ADP-heptose--LPS heptosyltransferase II;protein_id=CAL94423.1;transl_table=11
AM406670.1	EMBL	gene	1984769	1985425	.	-	.	ID=gene1847;Name=azo1807;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1807
AM406670.1	EMBL	CDS	1984769	1985425	.	-	0	ID=cds1805;Parent=gene1847;Dbxref=EnsemblGenomes-Gn:azo1807,EnsemblGenomes-Tr:CAL94424,GOA:A1K6G9,InterPro:IPR004446,InterPro:IPR006543,InterPro:IPR006549,InterPro:IPR023214,UniProtKB/TrEMBL:A1K6G9,NCBI_GP:CAL94424.1;Name=CAL94424.1;Note=Hypothetical protein yaeD.%3B~High confidence in function and specificity;gbkey=CDS;product=heptose phosphatase;protein_id=CAL94424.1;transl_table=11
AM406670.1	EMBL	gene	1985416	1986156	.	-	.	ID=gene1848;Name=azo1808;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1808
AM406670.1	EMBL	CDS	1985416	1986156	.	-	0	ID=cds1806;Parent=gene1848;Dbxref=EnsemblGenomes-Gn:azo1808,EnsemblGenomes-Tr:CAL94425,GOA:A1K6H0,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:A1K6H0,NCBI_GP:CAL94425.1;Name=CAL94425.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8YLL2 (35%25 identity)%3B TREMBL:Q9HWN3 (37%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL94425.1;transl_table=11
AM406670.1	EMBL	gene	1986153	1987412	.	-	.	ID=gene1849;Name=azo1809;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1809
AM406670.1	EMBL	CDS	1986153	1987412	.	-	0	ID=cds1807;Parent=gene1849;Dbxref=EnsemblGenomes-Gn:azo1809,EnsemblGenomes-Tr:CAL94426,GOA:A1K6H1,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:A1K6H1,NCBI_GP:CAL94426.1;Name=CAL94426.1;Note=Hypothetical protein Rv0486/MT0504/Mb0496. InterPro: Glycosyl transferases group 1%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL94426.1;transl_table=11
AM406670.1	EMBL	gene	1987667	1988008	.	+	.	ID=gene1850;Name=azo1810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1810
AM406670.1	EMBL	CDS	1987667	1988008	.	+	0	ID=cds1808;Parent=gene1850;Dbxref=EnsemblGenomes-Gn:azo1810,EnsemblGenomes-Tr:CAL94427,UniProtKB/TrEMBL:A1K6H2,NCBI_GP:CAL94427.1;Name=CAL94427.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94427.1;transl_table=11
AM406670.1	EMBL	gene	1987987	1988523	.	-	.	ID=gene1851;Name=azo1811;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1811
AM406670.1	EMBL	CDS	1987987	1988523	.	-	0	ID=cds1809;Parent=gene1851;Dbxref=EnsemblGenomes-Gn:azo1811,EnsemblGenomes-Tr:CAL94428,InterPro:IPR007353,InterPro:IPR023090,UniProtKB/TrEMBL:A1K6H3,NCBI_GP:CAL94428.1;Name=CAL94428.1;Note=Conserved hypothetical membrane protein. Homology to BPP2658 of B. parapertussis of 48%25 (trembl|Q7W772(SRS)). 3 TMHs. no signal protein. Has PF04239%3BProtein of unknown function (DUF421)%3BIPR007353 DUF421%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94428.1;transl_table=11
AM406670.1	EMBL	gene	1988694	1990121	.	+	.	ID=gene1852;Name=azo1812;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1812
AM406670.1	EMBL	CDS	1988694	1990121	.	+	0	ID=cds1810;Parent=gene1852;Dbxref=EnsemblGenomes-Gn:azo1812,EnsemblGenomes-Tr:CAL94429,GOA:A1K6H4,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K6H4,NCBI_GP:CAL94429.1;Name=CAL94429.1;Note=Probable transcriptional regulatory protein%2C%3B~Specificity unclear;gbkey=CDS;product=probable transcriptional regulatory protein;protein_id=CAL94429.1;transl_table=11
AM406670.1	EMBL	gene	1990267	1990617	.	+	.	ID=gene1853;Name=azo1813;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1813
AM406670.1	EMBL	CDS	1990267	1990617	.	+	0	ID=cds1811;Parent=gene1853;Dbxref=EnsemblGenomes-Gn:azo1813,EnsemblGenomes-Tr:CAL94430,UniProtKB/TrEMBL:A1K6H5,NCBI_GP:CAL94430.1;Name=CAL94430.1;Note=Hypothetical protein. Weak homology with hits.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94430.1;transl_table=11
AM406670.1	EMBL	gene	1990819	1991112	.	+	.	ID=gene1854;Name=azo1814;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1814
AM406670.1	EMBL	CDS	1990819	1991112	.	+	0	ID=cds1812;Parent=gene1854;Dbxref=EnsemblGenomes-Gn:azo1814,EnsemblGenomes-Tr:CAL94431,UniProtKB/TrEMBL:A1K6H6,NCBI_GP:CAL94431.1;Name=CAL94431.1;Note=Conserved hypothetical protein. Homology to ebD123 of Azoarcus sp. EbN1 of 50%25 (gnl|keqq|eba:ebD123(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94431.1;transl_table=11
AM406670.1	EMBL	gene	1991120	1991503	.	+	.	ID=gene1855;Name=azo1815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1815
AM406670.1	EMBL	CDS	1991120	1991503	.	+	0	ID=cds1813;Parent=gene1855;Dbxref=EnsemblGenomes-Gn:azo1815,EnsemblGenomes-Tr:CAL94432,InterPro:IPR009937,UniProtKB/TrEMBL:A1K6H7,NCBI_GP:CAL94432.1;Name=CAL94432.1;Note=Hypothetical membrane protein. No homology of the entire protein with the data bank. No domains predicted. No signal peptide. 2 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94432.1;transl_table=11
AM406670.1	EMBL	gene	1991500	1991976	.	+	.	ID=gene1856;Name=azo1816;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1816
AM406670.1	EMBL	CDS	1991500	1991976	.	+	0	ID=cds1814;Parent=gene1856;Dbxref=EnsemblGenomes-Gn:azo1816,EnsemblGenomes-Tr:CAL94433,UniProtKB/TrEMBL:A1K6H8,NCBI_GP:CAL94433.1;Name=CAL94433.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted No signal peptide 2 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94433.1;transl_table=11
AM406670.1	EMBL	gene	1992008	1995052	.	+	.	ID=gene1857;Name=azo1817;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1817
AM406670.1	EMBL	CDS	1992008	1995052	.	+	0	ID=cds1815;Parent=gene1857;Dbxref=EnsemblGenomes-Gn:azo1817,EnsemblGenomes-Tr:CAL94434,GOA:A1K6H9,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR013656,UniProtKB/TrEMBL:A1K6H9,NCBI_GP:CAL94434.1;Name=CAL94434.1;Note=Conserved hypothetical two-component hybrid sensor and regulator. Homology to ebA6890 of Azoarcus sp. EbN1 of 56%25 (gnl|keqq|eba:ebA6890(KEGG)). InterPro: IPR003594 ATPbind_ATPase. IPR004358 Bact_sens_pr_C. IPR005467 His_kinase. IPR003661 His_kinA_N. IPR009082 His_kin_homodim. IPR001610 PAC. IPR000700 PAS-assoc_C. IPR000014 PAS_domain. IPR001789 Response_reg. Pfam: PF02518 HATPase_c. PF00512 HisKA. PF00785 PAC. PF00989 PAS. PF00072 Response_reg. SMART: SM00387 HATPase_c. SM00388 HisKA. SM00086 PAC. SM00091 PAS. SM00448 REC. TIGRFAM: TIGR00229 sensory_box%3B 3 TMHMM reporting 7 transmembrane helices.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical two-component hybrid sensor and regulator;protein_id=CAL94434.1;transl_table=11
AM406670.1	EMBL	gene	1995107	1996027	.	+	.	ID=gene1858;Name=azo1818;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1818
AM406670.1	EMBL	CDS	1995107	1996027	.	+	0	ID=cds1816;Parent=gene1858;Dbxref=EnsemblGenomes-Gn:azo1818,EnsemblGenomes-Tr:CAL94435,GOA:A1K6I0,InterPro:IPR017039,UniProtKB/TrEMBL:A1K6I0,NCBI_GP:CAL94435.1;Name=CAL94435.1;Note=Putative ribonuclease RNASE BN (RBN)Protein%2C 31%25 identity (44%25 similarity) to TrEMBL%3B Q8XPH6. Has PF03631%3B Ribonuclease BN-like family%3BIPR004664%2C RNase_BN%3BThis family contains integral membrane proteins with 5 to 6 predicted transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation P32146. This family of proteins does not seem to contain any completely conserved polar residues that would be expected in a nuclease enzyme%2C suggesting that many members of this family may not have this catalytic activity.%3B~Family membership;gbkey=CDS;product=exoribonuclease II;protein_id=CAL94435.1;transl_table=11
AM406670.1	EMBL	gene	1996190	1997581	.	+	.	ID=gene1859;Name=azo1819;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1819
AM406670.1	EMBL	CDS	1996190	1997581	.	+	0	ID=cds1817;Parent=gene1859;Dbxref=EnsemblGenomes-Gn:azo1819,EnsemblGenomes-Tr:CAL94436,InterPro:IPR007055,UniProtKB/TrEMBL:A1K6I1,NCBI_GP:CAL94436.1;Name=CAL94436.1;Note=Hypothetical protein. Homology to dr0392 of D. radiodurans of 25%25 (trembl|Q9RXC3) Smart: Bacterial OsmY and nodulation domain (BON). The BON domain is typically ~~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins%2C typically of the OsmY-type proteins. no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;product=hypothetical protein;protein_id=CAL94436.1;transl_table=11
AM406670.1	EMBL	gene	1997651	1998100	.	+	.	ID=gene1860;Name=azo1820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1820
AM406670.1	EMBL	CDS	1997651	1998100	.	+	0	ID=cds1818;Parent=gene1860;Dbxref=EnsemblGenomes-Gn:azo1820,EnsemblGenomes-Tr:CAL94437,InterPro:IPR011033,InterPro:IPR027275,UniProtKB/TrEMBL:A1K6I2,NCBI_GP:CAL94437.1;Name=CAL94437.1;Note=Conserved hypothetical protein. Homology to BB2852 of B.bronchiseptica of 53%25 (tremble:Q7WIJ9). Has pfam05239%2C PRC%2C PRC-barrel domain. The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long%2C and found widely represented in bacteria%2C archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM%2C which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain. NO signal peptide reported to be present. No TMH reported to be present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94437.1;transl_table=11
AM406670.1	EMBL	gene	1998158	2000881	.	+	.	ID=gene1861;Name=azo1821;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1821
AM406670.1	EMBL	CDS	1998158	2000881	.	+	0	ID=cds1819;Parent=gene1861;Dbxref=EnsemblGenomes-Gn:azo1821,EnsemblGenomes-Tr:CAL94438,GOA:A1K6I3,InterPro:IPR001140,InterPro:IPR001789,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR003594,InterPro:IPR011006,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K6I3,NCBI_GP:CAL94438.1;Name=CAL94438.1;Note=Conserved hypothetical membrane protein. Homology to ebA6882 of Azoarcus sp. EbN1 of 74%25 (gnl|keqq|eba:ebA6882(KEGG)). Domian structure: 373 aa -599 aa AAA ATPase%3B 638 aa - 726 aa HATPase_c%3B 750 aa - 877 aa Rec InterPro: ABC transporter (IPR003439)%3B AAA ATPase superfamily (IPR003593)%3B ABC transporter transmembrane region (IPR001140)%3B ATP/GTP-binding site motif A ((P-loop) (IPR001687)%3B (Response regulator reciver (IPR001789)%3B Histidine kinase-%2C DNA gyrase B-%2C phytochrome-like ATPase (IPR003594) Pfam: ABC-transporter%2C ABC transmembrane region%3B Response regulator reciver domain. no signal peptide. probable 5 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94438.1;transl_table=11
AM406670.1	EMBL	gene	2000904	2001464	.	+	.	ID=gene1862;Name=azo1822;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1822
AM406670.1	EMBL	CDS	2000904	2001464	.	+	0	ID=cds1820;Parent=gene1862;Dbxref=EnsemblGenomes-Gn:azo1822,EnsemblGenomes-Tr:CAL94439,UniProtKB/TrEMBL:A1K6I4,NCBI_GP:CAL94439.1;Name=CAL94439.1;Note=Conserved hypothetical protein. Signal peptide present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94439.1;transl_table=11
AM406670.1	EMBL	gene	2001475	2002209	.	+	.	ID=gene1863;Name=azo1823;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1823
AM406670.1	EMBL	CDS	2001475	2002209	.	+	0	ID=cds1821;Parent=gene1863;Dbxref=EnsemblGenomes-Gn:azo1823,EnsemblGenomes-Tr:CAL94440,GOA:A1K6I5,InterPro:IPR003416,UniProtKB/TrEMBL:A1K6I5,NCBI_GP:CAL94440.1;Name=CAL94440.1;Note=Putative Mg(2+) transporter ATPase [attV]%2C 58%25 identity (77%25 similarity) to TrEMBL%3BQ8UKG4%2C Q9WWC7. TrEMBBL%3BQ7W456(66%25 identity). Has PF02308%3BMgtC family%3B(IPR003416%2C MgtCSapB_transpt):The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known. No Signal peptide or TMH reported present.%3B~Family membership;gbkey=CDS;product=putative Mg(2+) transporter;protein_id=CAL94440.1;transl_table=11
AM406670.1	EMBL	gene	2002246	2002746	.	-	.	ID=gene1864;Name=ygaD2;gbkey=Gene;gene=ygaD2;gene_biotype=protein_coding;locus_tag=azo1824
AM406670.1	EMBL	CDS	2002246	2002746	.	-	0	ID=cds1822;Parent=gene1864;Dbxref=EnsemblGenomes-Gn:azo1824,EnsemblGenomes-Tr:CAL94441,InterPro:IPR008136,UniProtKB/TrEMBL:A1K6I6,NCBI_GP:CAL94441.1;Name=CAL94441.1;Note=Protein ygaD. TREMBL:Q7W761: 58%25 identity%2C 68%25 similarity CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain. InterPro: Competence-damaged protein InterPro: IPR008136%3B CinA_C. Pfam: PF02464 cinA_cterm: competence/damage-inducible No Signal peptide (Signal P predicted) No transmembrane helices%3B~Function unclear;gbkey=CDS;gene=ygaD2;product=probable CinA domain protein;protein_id=CAL94441.1;transl_table=11
AM406670.1	EMBL	gene	2002713	2003273	.	-	.	ID=gene1865;Name=azo1825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1825
AM406670.1	EMBL	CDS	2002713	2003273	.	-	0	ID=cds1823;Parent=gene1865;Dbxref=EnsemblGenomes-Gn:azo1825,EnsemblGenomes-Tr:CAL94442,UniProtKB/TrEMBL:A1K6I7,NCBI_GP:CAL94442.1;Name=CAL94442.1;Note=Conserved hypothetical membrane protein. Homology to smb20339 of S. meliloti of 30%25 (trembl|Q92WL4(SRS)). No domains predicted. signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94442.1;transl_table=11
AM406670.1	EMBL	gene	2003309	2004646	.	+	.	ID=gene1866;Name=azo1826;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1826
AM406670.1	EMBL	CDS	2003309	2004646	.	+	0	ID=cds1824;Parent=gene1866;Dbxref=EnsemblGenomes-Gn:azo1826,EnsemblGenomes-Tr:CAL94443,GOA:A1K6I8,InterPro:IPR016040,InterPro:IPR025695,UniProtKB/TrEMBL:A1K6I8,NCBI_GP:CAL94443.1;Name=CAL94443.1;Note=39%25;gbkey=CDS;product=NADH dehydrogenase (ubiquinone);protein_id=CAL94443.1;transl_table=11
AM406670.1	EMBL	gene	2004654	2005118	.	+	.	ID=gene1867;Name=azo1827;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1827
AM406670.1	EMBL	CDS	2004654	2005118	.	+	0	ID=cds1825;Parent=gene1867;Dbxref=EnsemblGenomes-Gn:azo1827,EnsemblGenomes-Tr:CAL94444,InterPro:IPR018729,UniProtKB/TrEMBL:A1K6I9,NCBI_GP:CAL94444.1;Name=CAL94444.1;Note=Conserved hypothetical membrane protein. Homology to CC2898 of Caulobacter crescentus of 56%25 (trembl|Q89WY3(SRS)). No domains predicted. No signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94444.1;transl_table=11
AM406670.1	EMBL	gene	2005129	2006316	.	-	.	ID=gene1868;Name=azo1828;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1828
AM406670.1	EMBL	CDS	2005129	2006316	.	-	0	ID=cds1826;Parent=gene1868;Dbxref=EnsemblGenomes-Gn:azo1828,EnsemblGenomes-Tr:CAL94445,GOA:A1K6J0,InterPro:IPR000951,InterPro:IPR001041,InterPro:IPR001433,InterPro:IPR008333,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K6J0,NCBI_GP:CAL94445.1;Name=CAL94445.1;Note=Hypothetical secreted protein. No significant homology over the entire protein length with the data bank. InterPro: Oxidoreductase FAD and NAD(P)-binding domain (IPR001433)%3B Ferredoxin (IPR001041)%3B NADH: cytochrome b5 reductase (IPR001834). Pfam: Oxidoreductase FAD-binding domain%3B Oxidoreductase NAD-binding domain%3B 2Fe-2S iron-sulfur cluster binding domain. signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94445.1;transl_table=11
AM406670.1	EMBL	gene	2006232	2007008	.	-	.	ID=gene1869;Name=azo1829;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1829
AM406670.1	EMBL	CDS	2006232	2007008	.	-	0	ID=cds1827;Parent=gene1869;Dbxref=EnsemblGenomes-Gn:azo1829,EnsemblGenomes-Tr:CAL94446,UniProtKB/TrEMBL:A1K6J1,NCBI_GP:CAL94446.1;Name=CAL94446.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide. 1 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94446.1;transl_table=11
AM406670.1	EMBL	gene	2007034	2009067	.	-	.	ID=gene1870;Name=azo1830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1830
AM406670.1	EMBL	CDS	2007034	2009067	.	-	0	ID=cds1828;Parent=gene1870;Dbxref=EnsemblGenomes-Gn:azo1830,EnsemblGenomes-Tr:CAL94447,GOA:A1K6J2,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1K6J2,NCBI_GP:CAL94447.1;Name=CAL94447.1;Note=Similar to FepA%2C an iron regulated outer membrane protein. FepA is a receptor for the siderophore complex ferric enterobactin and for colcins B and D. INVOLVED IN THE INITIAL STEP OF IRON UPTAKE BY BINDING FERRIC ENTEROBACTIN THAT ALLOWS E. COLI TO EXTRACT IRON FROM THE ENVIRONMENT. ilvC: ketol-acid reductoisomerase%3B~Function unclear;gbkey=CDS;product=putative TonB-denpendent receptor;protein_id=CAL94447.1;transl_table=11
AM406670.1	EMBL	gene	2009546	2010928	.	+	.	ID=gene1871;Name=mauG;gbkey=Gene;gene=mauG;gene_biotype=protein_coding;locus_tag=azo1831
AM406670.1	EMBL	CDS	2009546	2010928	.	+	0	ID=cds1829;Parent=gene1871;Dbxref=EnsemblGenomes-Gn:azo1831,EnsemblGenomes-Tr:CAL94448,GOA:A1K6J3,InterPro:IPR009056,UniProtKB/TrEMBL:A1K6J3,NCBI_GP:CAL94448.1;Name=CAL94448.1;Note=Di-heme cytochrome c peroxidase MauG%2C required for the synthesis of the tryptophan tryptophylquinone (TTQ) prosthetic group of MADH in P.denitrificans . INVOLVED IN METHYLAMINE METABOLISM. ESSENTIAL FOR THE MATURATION OF THE BETA SUBUNIT OF MADH PRESUMABLY VIA A STEP IN THE BIOSYNTHESIS OF TRYPTOPHAN TRYPTOPHYLQUINONE (TTQ) THE COFACTOR OF MADH. urease_gam: urease gamma subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=mauG;product=putative cytochrome c551 peroxidase;protein_id=CAL94448.1;transl_table=11
AM406670.1	EMBL	gene	2010939	2011565	.	+	.	ID=gene1872;Name=azo1832;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1832
AM406670.1	EMBL	CDS	2010939	2011565	.	+	0	ID=cds1830;Parent=gene1872;Dbxref=EnsemblGenomes-Gn:azo1832,EnsemblGenomes-Tr:CAL94449,InterPro:IPR012347,InterPro:IPR025419,UniProtKB/TrEMBL:A1K6J4,NCBI_GP:CAL94449.1;Name=CAL94449.1;Note=Conserved hypothetical secreted protein. Homology ebA6930 of Azoarcus EbN1 of 31%25 (gnl|keqq|eba:ebA6930(KEGG)). No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94449.1;transl_table=11
AM406670.1	EMBL	gene	2011690	2012379	.	+	.	ID=gene1873;Name=alkA;gbkey=Gene;gene=alkA;gene_biotype=protein_coding;locus_tag=azo1833
AM406670.1	EMBL	CDS	2011690	2012379	.	+	0	ID=cds1831;Parent=gene1873;Dbxref=EnsemblGenomes-Gn:azo1833,EnsemblGenomes-Tr:CAL94450,GOA:A1K6J5,InterPro:IPR003265,InterPro:IPR003583,InterPro:IPR011257,InterPro:IPR023170,UniProtKB/TrEMBL:A1K6J5,NCBI_GP:CAL94450.1;Name=CAL94450.1;Note=DNA-3-methyladenine glycosylase 1 (3-methyladenine DNA glycosidase 1) (3MEA DNA glycosylase 1). HYDROLYSIS OF THE DEOXYRIBOSE N-GLYCOSIDIC BOND TO EXCISE 3-METHYLADENINE OR 7-METHYLADENINE FROM THE DAMAGED DNA POLYMER FORMED BY ALKYLATION LESIONS. CAN RELEASE ETHYLATED AND PROPYLATED BASES FROM DNA IN ADDITION TO 3-METHYLADENINE. TIGR00274: glucokinase regulator-related.%3B~High confidence in function and specificity;gbkey=CDS;gene=alkA;product=DNA-3-methyladenine glycosylase II;protein_id=CAL94450.1;transl_table=11
AM406670.1	EMBL	gene	2012480	2013760	.	-	.	ID=gene1874;Name=ndh2;gbkey=Gene;gene=ndh2;gene_biotype=protein_coding;locus_tag=azo1834
AM406670.1	EMBL	CDS	2012480	2013760	.	-	0	ID=cds1832;Parent=gene1874;Dbxref=EnsemblGenomes-Gn:azo1834,EnsemblGenomes-Tr:CAL94451,GOA:A1K6J6,InterPro:IPR001327,InterPro:IPR013027,InterPro:IPR023753,UniProtKB/TrEMBL:A1K6J6,NCBI_GP:CAL94451.1;Name=CAL94451.1;Note=Probable NADH dehydrogenase. Homology to ndh of P. fluorescens of 45%25 (trembl|Q9KGX09 TRANSFER OF ELECTRONS FROM NADH TO THE RESPIRATORY CHAIN. THE IMMEDIATE ELECTRON ACCEPTOR FOR THE ENZYME IS BELIEVED TO BE UBIQUINONE. DOES NOT COUPLE THE REDOX REACTION TO PROTON TRANSLOCATION. InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disulphide oxidoreductase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ndh2;product=probable NADH dehydrogenase;protein_id=CAL94451.1;transl_table=11
AM406670.1	EMBL	gene	2013981	2014892	.	-	.	ID=gene1875;Name=azo1835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1835
AM406670.1	EMBL	CDS	2013981	2014892	.	-	0	ID=cds1833;Parent=gene1875;Dbxref=EnsemblGenomes-Gn:azo1835,EnsemblGenomes-Tr:CAL94452,GOA:A1K6J7,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K6J7,NCBI_GP:CAL94452.1;Name=CAL94452.1;Note=Transcriptional regulator%2C LysR family%2C%3B~Specificity unclear;gbkey=CDS;product=LysR-family transcriptional regulator;protein_id=CAL94452.1;transl_table=11
AM406670.1	EMBL	gene	2015262	2016950	.	+	.	ID=gene1876;Name=azo1836;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1836
AM406670.1	EMBL	CDS	2015262	2016950	.	+	0	ID=cds1834;Parent=gene1876;Dbxref=EnsemblGenomes-Gn:azo1836,EnsemblGenomes-Tr:CAL94453,InterPro:IPR010727,UniProtKB/TrEMBL:A1K6J8,NCBI_GP:CAL94453.1;Name=CAL94453.1;Note=Hypothetical protein sharing 76%25 similarity(61%25 identity) with Hypothetical protein [Thauera aromatica]TrEMBl O87938. Has pfam06980%2C DUF1302 domain%2CProtein of unknown function (DUF1302). This family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas.(IPR010727) No Signal peptide or TMH being reported to be present.%3B~Function unclear;gbkey=CDS;product=hypothetical protein;protein_id=CAL94453.1;transl_table=11
AM406670.1	EMBL	gene	2016980	2018332	.	+	.	ID=gene1877;Name=azo1837;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1837
AM406670.1	EMBL	CDS	2016980	2018332	.	+	0	ID=cds1835;Parent=gene1877;Dbxref=EnsemblGenomes-Gn:azo1837,EnsemblGenomes-Tr:CAL94454,InterPro:IPR010752,UniProtKB/TrEMBL:A1K6J9,NCBI_GP:CAL94454.1;Name=CAL94454.1;Note=Conserved hypothetical secreed protein. Homology to PA3081 of P.aeruginosa of 40%25 (tremble:Q9HZC7). Has DUF1329 domain(PF07044%2CIPRO10752). Protein of unknown function (DUF1329):This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica. No TMHs. Signal present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94454.1;transl_table=11
AM406670.1	EMBL	gene	2018425	2019552	.	+	.	ID=gene1878;Name=azo1838;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1838
AM406670.1	EMBL	CDS	2018425	2019552	.	+	0	ID=cds1836;Parent=gene1878;Dbxref=EnsemblGenomes-Gn:azo1838,EnsemblGenomes-Tr:CAL94455,InterPro:IPR015943,InterPro:IPR028203,UniProtKB/TrEMBL:A1K6K0,NCBI_GP:CAL94455.1;Name=CAL94455.1;Note=Conserved hypothetical BNR domain protein. Homology to pp3201 of P. putida of 46%25 (trembl|Q88I01). InterPro: BNR repeat (IPR002860). Pfam: BNR repeat. BNR repeats are short repeats never found closer than 40 residues together%2C which suggests that the repeat is structurally longer. These repeats are found in many glycosyl hydrolases as well as other extracellular proteins of unknown function. singal peptide. no TMHs%3B~Function unclear;gbkey=CDS;product=conserved hypothetical BNR domain protein;protein_id=CAL94455.1;transl_table=11
AM406670.1	EMBL	gene	2019552	2021942	.	+	.	ID=gene1879;Name=azo1839;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1839
AM406670.1	EMBL	CDS	2019552	2021942	.	+	0	ID=cds1837;Parent=gene1879;Dbxref=EnsemblGenomes-Gn:azo1839,EnsemblGenomes-Tr:CAL94456,GOA:A1K6K1,InterPro:IPR004869,UniProtKB/TrEMBL:A1K6K1,NCBI_GP:CAL94456.1;Name=CAL94456.1;Note=Putative membrane protein MJ1562. TREMBL:Q88I00: 66%25 identity%2C 51%25 similarity The sterol-sensing domain (SSD) consists of approximately 180 amino acids organized into a cluster of five consecutive membrane-spanning domains and is found in proteins which have key roles in different aspects of cholesterol homeostasis or cholesterol-linked signalling such as sterol-regulated movement or the trafficking of specific cargoes. InterPro:IPR000731%3B SSD_5TM Found in :IPR003392: Patched family IPR004816: Hydroxymethylglutaryl-CoA reductase (NADPH Pfam:Patched:Patched family TIGRFAM:2A060602:transmembrane receptor Patch 2A0604s01: protein-export membrane pro TMHMM predicted 12 transmembrane helices%3B~Family membership;gbkey=CDS;product=probable transporter;protein_id=CAL94456.1;transl_table=11
AM406670.1	EMBL	gene	2021961	2022410	.	+	.	ID=gene1880;Name=azo1840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1840
AM406670.1	EMBL	CDS	2021961	2022410	.	+	0	ID=cds1838;Parent=gene1880;Dbxref=EnsemblGenomes-Gn:azo1840,EnsemblGenomes-Tr:CAL94457,GOA:A1K6K2,InterPro:IPR006015,InterPro:IPR006016,InterPro:IPR014729,UniProtKB/TrEMBL:A1K6K2,NCBI_GP:CAL94457.1;Name=CAL94457.1;Note=Putative universal stress protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative universal stress protein;protein_id=CAL94457.1;transl_table=11
AM406670.1	EMBL	gene	2022415	2023890	.	+	.	ID=gene1881;Name=azo1841;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1841
AM406670.1	EMBL	CDS	2022415	2023890	.	+	0	ID=cds1839;Parent=gene1881;Dbxref=EnsemblGenomes-Gn:azo1841,EnsemblGenomes-Tr:CAL94458,GOA:A1K6K3,InterPro:IPR004089,UniProtKB/TrEMBL:A1K6K3,NCBI_GP:CAL94458.1;Name=CAL94458.1;Note=Methyl-accepting chemotaxis protein%2C%3B~Specificity unclear;gbkey=CDS;product=probable methyl-accepting chemotaxis transducer;protein_id=CAL94458.1;transl_table=11
AM406670.1	EMBL	gene	2024002	2025687	.	+	.	ID=gene1882;Name=lapR;gbkey=Gene;gene=lapR;gene_biotype=protein_coding;locus_tag=azo1842
AM406670.1	EMBL	CDS	2024002	2025687	.	+	0	ID=cds1840;Parent=gene1882;Dbxref=EnsemblGenomes-Gn:azo1842,EnsemblGenomes-Tr:CAL94459,GOA:A1K6K4,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR004096,InterPro:IPR009057,InterPro:IPR010523,InterPro:IPR024096,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K6K4,NCBI_GP:CAL94459.1;Name=CAL94459.1;Note=Transcriptional regulatory protein lapR. In Pseudomonas sp. strain KL28 the genes%2C designated as lap (for long-chain alkylphenols)%2C encoding enzymes for the catabolic 3- and 4-alkylphenol degradation pathway. The lap genes are located in a 13.2 kb region with 14 ORFs in the order lapRBKLMNOPCEHIFG and with the same transcriptional orientation. The lapR gene is transcribed independently and encodes a member of the XylR/DmpR positive transcriptional regulators. Similarity to SWISSPROT: sprot|XYLR_PSEPU (45%25 Pseudomonas putida%2C XylR) / TREMBL: trembl|Q7WYF6 (63%25 Pseudomonas strain KL28%2CLapR) InterPro: IPR002078 Sig54_interact. IPR004096 V4R. IPR003593 AAA_ATPase. IPR002197 HTH_Fis. Pfam: PF02954 HTH_8. PF00158 Sigma54_activat. PF02830 V4R. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=lapR;product=transcriptional regulatory protein;protein_id=CAL94459.1;transl_table=11
AM406670.1	EMBL	gene	2026337	2026654	.	+	.	ID=gene1883;Name=azo1843;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1843
AM406670.1	EMBL	CDS	2026337	2026654	.	+	0	ID=cds1841;Parent=gene1883;Dbxref=EnsemblGenomes-Gn:azo1843,EnsemblGenomes-Tr:CAL94460,GOA:A1K6K5,InterPro:IPR001041,InterPro:IPR006058,InterPro:IPR012675,UniProtKB/TrEMBL:A1K6K5,NCBI_GP:CAL94460.1;Name=CAL94460.1;Note=plant type ferredoxin like protein cofactor: binds 1 2fe-2s cluster (by similarity). Pfam: fer2 2Fe-2S iron-sulfur cluster binding do%3B~Function unclear;gbkey=CDS;product=plant type ferredoxin like protein;protein_id=CAL94460.1;transl_table=11
AM406670.1	EMBL	gene	2026691	2027626	.	+	.	ID=gene1884;Name=lapB1;gbkey=Gene;gene=lapB1;gene_biotype=protein_coding;locus_tag=azo1844
AM406670.1	EMBL	CDS	2026691	2027626	.	+	0	ID=cds1842;Parent=gene1884;Dbxref=EnsemblGenomes-Gn:azo1844,EnsemblGenomes-Tr:CAL94461,GOA:A1K6K6,InterPro:IPR000486,InterPro:IPR004360,InterPro:IPR017624,InterPro:IPR029068,UniProtKB/TrEMBL:A1K6K6,NCBI_GP:CAL94461.1;Name=CAL94461.1;Note=In Pseudomonas sp. strain KL28 the genes%2Cdesignated as lap (for long-chain alkylphenols)%2C encoding enzymes for the catabolic 3- and 4-alkylphenol degradation pathway. The lap genes are located in a 13.2 kb region with 14 ORFs in the order lapRBKLMNOPCEHIFG and with the same transcriptional orientation. Catechol 2%2C3-dioxygenase LapB%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=lapB1;product=catechol 2%2C3-dioxygenase;protein_id=CAL94461.1;transl_table=11
AM406670.1	EMBL	gene	2027628	2027888	.	+	.	ID=gene1885;Name=lapK;gbkey=Gene;gene=lapK;gene_biotype=protein_coding;locus_tag=azo1845
AM406670.1	EMBL	CDS	2027628	2027888	.	+	0	ID=cds1843;Parent=gene1885;Dbxref=EnsemblGenomes-Gn:azo1845,EnsemblGenomes-Tr:CAL94462,GOA:A1K6K7,InterPro:IPR010353,UniProtKB/TrEMBL:A1K6K7,NCBI_GP:CAL94462.1;Name=CAL94462.1;Note=Phenol 2-monooxygenase p0 component%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=lapK;product=phenol 2-monooxygenase;protein_id=CAL94462.1;transl_table=11
AM406670.1	EMBL	gene	2027934	2028926	.	+	.	ID=gene1886;Name=lapL;gbkey=Gene;gene=lapL;gene_biotype=protein_coding;locus_tag=azo1846
AM406670.1	EMBL	CDS	2027934	2028926	.	+	0	ID=cds1844;Parent=gene1886;Dbxref=EnsemblGenomes-Gn:azo1846,EnsemblGenomes-Tr:CAL94463,GOA:A1K6K8,InterPro:IPR003430,InterPro:IPR009078,InterPro:IPR012078,InterPro:IPR012348,UniProtKB/TrEMBL:A1K6K8,NCBI_GP:CAL94463.1;Name=CAL94463.1;Note=Phenol hydroxylase p1 protein. Catabolizes phenol and some of its methylated derivates. P1 is required for growth on phenol and for in vitro phenol hydroxylase activity. Similar to SWISSPROT: sprot|DMPL_PSESP (52%25 Pseudomonas sp. (strain CF600)%2C DmpL) / TREMBL: trembl|Q7WYF3 (67%25 Pseudomonas sp. KL28%2C LapL) InterPro: IPR003430 Phenol_Hydrox. Pfam: PF02332 Methane/Phenol/Toluene Hydroxylase. Part of the lap operon: In Pseudomonas sp. strain KL28 the genes%2Cdesignated as lap (for long-chain alkylphenols)%2C encoding enzymes for the catabolic 3- and 4-alkylphenol degradation pathway. The lap genes are located in a 13.2 kb region with 14 ORFs in the order lapRBKLMNOPCEHIFG and with the same transcriptional orientation.%3B~High confidence in function and specificity;gbkey=CDS;gene=lapL;product=phenol 2-monooxygenase p1 component;protein_id=CAL94463.1;transl_table=11
AM406670.1	EMBL	gene	2028935	2029204	.	+	.	ID=gene1887;Name=lapM;gbkey=Gene;gene=lapM;gene_biotype=protein_coding;locus_tag=azo1847
AM406670.1	EMBL	CDS	2028935	2029204	.	+	0	ID=cds1845;Parent=gene1887;Dbxref=EnsemblGenomes-Gn:azo1847,EnsemblGenomes-Tr:CAL94464,GOA:A1K6K9,InterPro:IPR003454,UniProtKB/TrEMBL:A1K6K9,NCBI_GP:CAL94464.1;Name=CAL94464.1;Note=Phenol 2-monooxygenase p2 component%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=lapM;product=phenol 2-monooxygenase p2 component;protein_id=CAL94464.1;transl_table=11
AM406670.1	EMBL	gene	2029221	2030738	.	+	.	ID=gene1888;Name=lapN;gbkey=Gene;gene=lapN;gene_biotype=protein_coding;locus_tag=azo1848
AM406670.1	EMBL	CDS	2029221	2030738	.	+	0	ID=cds1846;Parent=gene1888;Dbxref=EnsemblGenomes-Gn:azo1848,EnsemblGenomes-Tr:CAL94465,GOA:A1K6L0,InterPro:IPR003430,InterPro:IPR007029,InterPro:IPR009078,InterPro:IPR012348,UniProtKB/TrEMBL:A1K6L0,NCBI_GP:CAL94465.1;Name=CAL94465.1;Note=Phenol 2-monooxygenase p3 component%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=lapN;product=phenol 2-monooxygenase p3 component;protein_id=CAL94465.1;transl_table=11
AM406670.1	EMBL	gene	2030817	2031173	.	+	.	ID=gene1889;Name=lapO;gbkey=Gene;gene=lapO;gene_biotype=protein_coding;locus_tag=azo1849
AM406670.1	EMBL	CDS	2030817	2031173	.	+	0	ID=cds1847;Parent=gene1889;Dbxref=EnsemblGenomes-Gn:azo1849,EnsemblGenomes-Tr:CAL94466,GOA:A1K6L1,InterPro:IPR006756,UniProtKB/TrEMBL:A1K6L1,NCBI_GP:CAL94466.1;Name=CAL94466.1;Note=Phenol 2-monooxygenase p4 component%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=lapO;product=phenol 2-monooxygenase p4 component;protein_id=CAL94466.1;transl_table=11
AM406670.1	EMBL	gene	2031229	2032290	.	+	.	ID=gene1890;Name=lapP;gbkey=Gene;gene=lapP;gene_biotype=protein_coding;locus_tag=azo1850
AM406670.1	EMBL	CDS	2031229	2032290	.	+	0	ID=cds1848;Parent=gene1890;Dbxref=EnsemblGenomes-Gn:azo1850,EnsemblGenomes-Tr:CAL94467,GOA:A1K6L2,InterPro:IPR001041,InterPro:IPR001221,InterPro:IPR001433,InterPro:IPR008333,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K6L2,NCBI_GP:CAL94467.1;Name=CAL94467.1;Note=Phenol hydroxylase P5 protein (EC 1.14.13.7) (Phenol 2-monooxygenase P5 component). Probable electron transfer from NADPH via FAD and the 2Fe-2S center to the oxygenase activity site of the enzyme.%3B~High confidence in function and specificity;gbkey=CDS;gene=lapP;product=Phenol 2-monooxygenase;protein_id=CAL94467.1;transl_table=11
AM406670.1	EMBL	gene	2032562	2033650	.	-	.	ID=gene1891;Name=azo1851;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1851
AM406670.1	EMBL	CDS	2032562	2033650	.	-	0	ID=cds1849;Parent=gene1891;Dbxref=EnsemblGenomes-Gn:azo1851,EnsemblGenomes-Tr:CAL94468,InterPro:IPR025332,UniProtKB/TrEMBL:A1K6L3,NCBI_GP:CAL94468.1;Name=CAL94468.1;Note=Conserved hypothetical protein. Homology to an orf of Vibrio vulnificus of 41%25 (gi|51242695|gb|AAT99285.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94468.1;transl_table=11
AM406670.1	EMBL	gene	2034874	2036334	.	+	.	ID=gene1892;Name=lapC;gbkey=Gene;gene=lapC;gene_biotype=protein_coding;locus_tag=azo1852
AM406670.1	EMBL	CDS	2034874	2036334	.	+	0	ID=cds1850;Parent=gene1892;Dbxref=EnsemblGenomes-Gn:azo1852,EnsemblGenomes-Tr:CAL94469,GOA:A1K6L4,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR017628,InterPro:IPR029510,UniProtKB/TrEMBL:A1K6L4,NCBI_GP:CAL94469.1;Name=CAL94469.1;Note=5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=lapC;product=5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase;protein_id=CAL94469.1;transl_table=11
AM406670.1	EMBL	gene	2036713	2037510	.	+	.	ID=gene1893;Name=lapE;gbkey=Gene;gene=lapE;gene_biotype=protein_coding;locus_tag=azo1853
AM406670.1	EMBL	CDS	2036713	2037510	.	+	0	ID=cds1851;Parent=gene1893;Dbxref=EnsemblGenomes-Gn:azo1853,EnsemblGenomes-Tr:CAL94470,GOA:A1K6L5,InterPro:IPR002529,InterPro:IPR011234,InterPro:IPR017632,UniProtKB/TrEMBL:A1K6L5,NCBI_GP:CAL94470.1;Name=CAL94470.1;Note=Conversion of 2-hydroxypent-2%2C4-dienoate into 4-hydroxy-2-oxopentanoate%2C involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. Belongs to the todj/xyli/xylj/hpcg family%2C TREMBL:Q93JW5 (62%25 identity)%3B SWISSPROT:P23107 (58%25 identity). Pfam (PF01689): Hydratase/decarboxylase.%3B~High confidence in function and specificity;gbkey=CDS;gene=lapE;product=2-oxopent-4-enoate hydratase;protein_id=CAL94470.1;transl_table=11
AM406670.1	EMBL	gene	2037507	2038310	.	+	.	ID=gene1894;Name=lapH;gbkey=Gene;gene=lapH;gene_biotype=protein_coding;locus_tag=azo1854
AM406670.1	EMBL	CDS	2037507	2038310	.	+	0	ID=cds1852;Parent=gene1894;Dbxref=EnsemblGenomes-Gn:azo1854,EnsemblGenomes-Tr:CAL94471,GOA:A1K6L6,InterPro:IPR002529,InterPro:IPR011234,InterPro:IPR017630,UniProtKB/TrEMBL:A1K6L6,NCBI_GP:CAL94471.1;Name=CAL94471.1;Note=Conversion of 4-oxalocrotonate into 2-oxopent-4-enoate%2C involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. Belongs to the todJ/xylI/xylJ/hpcG family%2C TREMBL:Q8RQD3 (56%25 identity)%3B SWISSPROT:P23107. Pfam (PF01689): Hydratase/decarboxylase.%3B~High confidence in function and specificity;gbkey=CDS;gene=lapH;product=4-oxalocrotonate decarboxylase;protein_id=CAL94471.1;transl_table=11
AM406670.1	EMBL	gene	2038330	2038551	.	+	.	ID=gene1895;Name=lapI;gbkey=Gene;gene=lapI;gene_biotype=protein_coding;locus_tag=azo1855
AM406670.1	EMBL	CDS	2038330	2038551	.	+	0	ID=cds1853;Parent=gene1895;Dbxref=EnsemblGenomes-Gn:azo1855,EnsemblGenomes-Tr:CAL94472,GOA:A1K6L7,InterPro:IPR004370,InterPro:IPR014347,UniProtKB/TrEMBL:A1K6L7,NCBI_GP:CAL94472.1;Name=CAL94472.1;Note=4-oxalocrotonate isomerase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=lapI;product=oxaloacetate tautomerase;protein_id=CAL94472.1;transl_table=11
AM406670.1	EMBL	gene	2038548	2039462	.	+	.	ID=gene1896;Name=lapF;gbkey=Gene;gene=lapF;gene_biotype=protein_coding;locus_tag=azo1856
AM406670.1	EMBL	CDS	2038548	2039462	.	+	0	ID=cds1854;Parent=gene1896;Dbxref=EnsemblGenomes-Gn:azo1856,EnsemblGenomes-Tr:CAL94473,GOA:A1K6L8,InterPro:IPR000534,InterPro:IPR003361,InterPro:IPR015426,InterPro:IPR016040,NCBI_GP:CAL94473.1;Name=CAL94473.1;Note=This family of bacterial enzymes catalyse the formation of acetyl- CoA from acetaldehyde in the 3-hydroxyphenylpropinoate degradation pathway%2C TREMBL:P97091 (72%25 identity)%3B TREMBL:O51855 (70%25 identity). InterPro (IPR003361): Acetaldehyde dehydrogenase Pfam (PF02396): Acetaldehyde dehydrogenase.%3B~High confidence in function and specificity;gbkey=CDS;gene=lapF;product=acetaldehyde dehydrogenase;protein_id=CAL94473.1;transl_table=11
AM406670.1	EMBL	gene	2039462	2040505	.	+	.	ID=gene1897;Name=lapG;gbkey=Gene;gene=lapG;gene_biotype=protein_coding;locus_tag=azo1857
AM406670.1	EMBL	CDS	2039462	2040505	.	+	0	ID=cds1855;Parent=gene1897;Dbxref=EnsemblGenomes-Gn:azo1857,EnsemblGenomes-Tr:CAL94474,GOA:A1K6L9,InterPro:IPR000891,InterPro:IPR012425,InterPro:IPR013785,InterPro:IPR017629,NCBI_GP:CAL94474.1;Name=CAL94474.1;Note=4-hydroxy-2-oxovalerate aldolase%2C MhpE%2C probable involved in the degradation of phenol or phenylpropionate. Similar to sprot|MHPE_ECOLI (52%25) and to trembl|Q7WYE3 (84%25). Pfam (PF00682): HMG-CoA lyase-like family Hydroxymethylglutaryl-CoA lyase catalyses the conversion of (S)-3-hydroxy-3-methylglutaryl-CoA to acetyl-CoA and acetoacetate during the final step of ketogenesis and leucine catabolism. The HMGL-like signature is found in a diverse set of enzymes including various aldolases and a region of pyruvate carboxylase.%3B~Specificity unclear;gbkey=CDS;gene=lapG;product=4-hydroxy 2-oxovalerate aldolase;protein_id=CAL94474.1;transl_table=11
AM406670.1	EMBL	gene	2041184	2042116	.	+	.	ID=gene1898;Name=xylE;gbkey=Gene;gene=xylE;gene_biotype=protein_coding;locus_tag=azo1858
AM406670.1	EMBL	CDS	2041184	2042116	.	+	0	ID=cds1856;Parent=gene1898;Dbxref=EnsemblGenomes-Gn:azo1858,EnsemblGenomes-Tr:CAL94475,GOA:A1K6M0,InterPro:IPR000486,InterPro:IPR004360,InterPro:IPR017624,InterPro:IPR029068,UniProtKB/TrEMBL:A1K6M0,NCBI_GP:CAL94475.1;Name=CAL94475.1;Note=Catechol 2%2C3-dioxygenase XylE catalyzes the ring cleavage of catechol and some substituted catechols. Similar to pir|JE0112 (52%25)%2C to trembl|Q45459 (48%25)and to sprot|XYE2_PSEPU (50%25). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ProDom (PD000977): Extradiol ring-cleavage dioxygenase%3B~Specificity unclear;gbkey=CDS;gene=xylE;product=probable Catechol 2%2C3-dioxygenase;protein_id=CAL94475.1;transl_table=11
AM406670.1	EMBL	gene	2042142	2042897	.	+	.	ID=gene1899;Name=azo1859;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1859
AM406670.1	EMBL	CDS	2042142	2042897	.	+	0	ID=cds1857;Parent=gene1899;Dbxref=EnsemblGenomes-Gn:azo1859,EnsemblGenomes-Tr:CAL94476,GOA:A1K6M1,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:A1K6M1,NCBI_GP:CAL94476.1;Name=CAL94476.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q82N83 (22%25 identity)%3B TREMBL:Q9F8V0 (21%25 identity). Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL94476.1;transl_table=11
AM406670.1	EMBL	gene	2042908	2043327	.	+	.	ID=gene1900;Name=azo1860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1860
AM406670.1	EMBL	CDS	2042908	2043327	.	+	0	ID=cds1858;Parent=gene1900;Dbxref=EnsemblGenomes-Gn:azo1860,EnsemblGenomes-Tr:CAL94477,GOA:A1K6M2,InterPro:IPR014347,UniProtKB/TrEMBL:A1K6M2,NCBI_GP:CAL94477.1;Name=CAL94477.1;Note=Putative tautomerase Weak Homology with others similar proteins. Has 2 copies of PF01361%2C Tautomerase enzyme%3BIPR004370%2C Taut%3BThis family includes the enzyme 4-oxalocrotonate tautomerase Q01468 that catalyses the ketonisation of 2-hydroxymuconate to 2-oxo-3-hexenedioate.;gbkey=CDS;product=putative tautomerase;protein_id=CAL94477.1;transl_table=11
AM406670.1	EMBL	gene	2043439	2044947	.	-	.	ID=gene1901;Name=azo1861;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1861
AM406670.1	EMBL	CDS	2043439	2044947	.	-	0	ID=cds1859;Parent=gene1901;Dbxref=EnsemblGenomes-Gn:azo1861,EnsemblGenomes-Tr:CAL94478,InterPro:IPR021139,InterPro:IPR029060,UniProtKB/TrEMBL:A1K6M3,NCBI_GP:CAL94478.1;Name=CAL94478.1;Note=Hypothetical protein. No homology of the entire protein to the data base. Has (IPR002790)PF01936%3BProtein of unknown function DUF88%3B This highly conserved bacterial protein has no known function. The alignment contains many conserved aspartates%2C suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase (Bateman A pers. obs). No Signal peptide or TMH present.;gbkey=CDS;product=hypothetical protein;protein_id=CAL94478.1;transl_table=11
AM406670.1	EMBL	gene	2045147	2045857	.	+	.	ID=gene1902;Name=rluA2;gbkey=Gene;gene=rluA2;gene_biotype=protein_coding;locus_tag=azo1862
AM406670.1	EMBL	CDS	2045147	2045857	.	+	0	ID=cds1860;Parent=gene1902;Dbxref=EnsemblGenomes-Gn:azo1862,EnsemblGenomes-Tr:CAL94479,GOA:A1K6M4,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR020103,UniProtKB/TrEMBL:A1K6M4,NCBI_GP:CAL94479.1;Name=CAL94479.1;Note=Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase). Responsible for synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs.%3B~Family membership;gbkey=CDS;gene=rluA2;product=pseudouridine synthase A;protein_id=CAL94479.1;transl_table=11
AM406670.1	EMBL	gene	2045941	2046025	.	+	.	ID=gene1903;Name=tRNA-Leu;gbkey=Gene;gene=tRNA-Leu;gene_biotype=tRNA;locus_tag=azo_tRNA_0037
AM406670.1	EMBL	tRNA	2045941	2046025	.	+	.	ID=rna42;Parent=gene1903;anticodon=(pos:2045975..2045977);gbkey=tRNA;gene=tRNA-Leu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Leu
AM406670.1	EMBL	exon	2045941	2046025	.	+	.	ID=id43;Parent=rna42;anticodon=(pos:2045975..2045977);gbkey=tRNA;gene=tRNA-Leu;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Leu
AM406670.1	EMBL	gene	2046178	2047254	.	+	.	ID=gene1904;Name=azo1863;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1863
AM406670.1	EMBL	CDS	2046178	2047254	.	+	0	ID=cds1861;Parent=gene1904;Dbxref=EnsemblGenomes-Gn:azo1863,EnsemblGenomes-Tr:CAL94480,GOA:A1K6M5,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,InterPro:IPR023109,UniProtKB/TrEMBL:A1K6M5,NCBI_GP:CAL94480.1;Name=CAL94480.1;Note=Integrase. INTEGRASE IS NECESSARY FOR INTEGRATION OF THE PHAGE INTO THE HOST GENOME BY SITE-SPECIFIC RECOMBINATION. IN CONJUNCTION WITH EXCISIONASE INTEGRASE IS ALSO NECESSARY FOR EXCISION OF THE PROPHAGE FROM THE HOST GENOME.%3B~Specificity unclear;gbkey=CDS;product=site-specific recombinase%2C phage integrase family;protein_id=CAL94480.1;transl_table=11
AM406670.1	EMBL	gene	2047997	2048656	.	+	.	ID=gene1905;Name=azo1864;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1864
AM406670.1	EMBL	CDS	2047997	2048656	.	+	0	ID=cds1862;Parent=gene1905;Dbxref=EnsemblGenomes-Gn:azo1864,EnsemblGenomes-Tr:CAL94481,InterPro:IPR018754,UniProtKB/TrEMBL:A1K6M6,NCBI_GP:CAL94481.1;Name=CAL94481.1;Note=Hypothetical protein %2C 27%25 identity to TrEMBL%3BQ84EQ6. No domains%2C repeats%2C motifs or features present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94481.1;transl_table=11
AM406670.1	EMBL	gene	2048746	2049024	.	+	.	ID=gene1906;Name=azo1865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1865
AM406670.1	EMBL	CDS	2048746	2049024	.	+	0	ID=cds1863;Parent=gene1906;Dbxref=EnsemblGenomes-Gn:azo1865,EnsemblGenomes-Tr:CAL94482,UniProtKB/TrEMBL:A1K6M7,NCBI_GP:CAL94482.1;Name=CAL94482.1;Note=Hypothetical protein. No matches in the database. No domains%2C repeats%2C motifs or features present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94482.1;transl_table=11
AM406670.1	EMBL	gene	2049041	2049337	.	+	.	ID=gene1907;Name=azo1866;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1866
AM406670.1	EMBL	CDS	2049041	2049337	.	+	0	ID=cds1864;Parent=gene1907;Dbxref=EnsemblGenomes-Gn:azo1866,EnsemblGenomes-Tr:CAL94483,UniProtKB/TrEMBL:A1K6M8,NCBI_GP:CAL94483.1;Name=CAL94483.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL94483.1;transl_table=11
AM406670.1	EMBL	gene	2049341	2049763	.	+	.	ID=gene1908;Name=azo1867;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1867
AM406670.1	EMBL	CDS	2049341	2049763	.	+	0	ID=cds1865;Parent=gene1908;Dbxref=EnsemblGenomes-Gn:azo1867,EnsemblGenomes-Tr:CAL94484,UniProtKB/TrEMBL:A1K6M9,NCBI_GP:CAL94484.1;Name=CAL94484.1;Note=Hypothetical protein. Very weak homology with hits in the database. No domains%2C repeats%2C motifs or features present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94484.1;transl_table=11
AM406670.1	EMBL	gene	2050193	2050453	.	+	.	ID=gene1909;Name=azo1868;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1868
AM406670.1	EMBL	CDS	2050193	2050453	.	+	0	ID=cds1866;Parent=gene1909;Dbxref=EnsemblGenomes-Gn:azo1868,EnsemblGenomes-Tr:CAL94485,UniProtKB/TrEMBL:A1K6N0,NCBI_GP:CAL94485.1;Name=CAL94485.1;Note=Hypothetical protein%2C very weak homology with hits in the Database. No Motifs%2Cdomains%2C or Signal peptide present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94485.1;transl_table=11
AM406670.1	EMBL	gene	2050453	2050995	.	+	.	ID=gene1910;Name=azo1869;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1869
AM406670.1	EMBL	CDS	2050453	2050995	.	+	0	ID=cds1867;Parent=gene1910;Dbxref=EnsemblGenomes-Gn:azo1869,EnsemblGenomes-Tr:CAL94486,UniProtKB/TrEMBL:A1K6N1,NCBI_GP:CAL94486.1;Name=CAL94486.1;Note=Putative Hypothetical protein. Very weak homology with hits in the Database. No signficant domains%2C motifs or Signal Peptide present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94486.1;transl_table=11
AM406670.1	EMBL	gene	2050956	2052833	.	+	.	ID=gene1911;Name=azo1870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1870
AM406670.1	EMBL	CDS	2050956	2052833	.	+	0	ID=cds1868;Parent=gene1911;Dbxref=EnsemblGenomes-Gn:azo1870,EnsemblGenomes-Tr:CAL94487,GOA:A1K6N2,InterPro:IPR001907,InterPro:IPR023562,InterPro:IPR029045,UniProtKB/TrEMBL:A1K6N2,NCBI_GP:CAL94487.1;Name=CAL94487.1;Note=Putative protease encoded ATP-dependent Clp protease family protein similar(30 Identity%2C45%25 similarity in function) to TrEMBL:Q8X866. IPR001907. Has pfam00574%2CCLP_protease%2C Clp protease. The Clp protease has an active site catalytic triad. In E. coli Clp protease%2C ser-111%2Chis-136 and asp-185 form the catalytic triad. One member has lost all of these active site residues and is therefore inactive. Some members contain one or two large insertions. Peptidase family S49 domain present. Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity). PF00574%3BCLP_protease PR00127%3BCLPPROTEASEP PS00381%3BCLP_PROTEASE_SER PS00382%3BCLP_PROTEASE_HIS TIGR00493%3BclpP No Signal peptide or TMH being reported as present.%3B~High confidence in function and specificity;gbkey=CDS;product=Endopeptidase Clp;protein_id=CAL94487.1;transl_table=11
AM406670.1	EMBL	gene	2052959	2053276	.	+	.	ID=gene1912;Name=azo1871;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1871
AM406670.1	EMBL	CDS	2052959	2053276	.	+	0	ID=cds1869;Parent=gene1912;Dbxref=EnsemblGenomes-Gn:azo1871,EnsemblGenomes-Tr:CAL94488,UniProtKB/TrEMBL:A1K6N3,NCBI_GP:CAL94488.1;Name=CAL94488.1;gbkey=CDS;inference=nucleotide motif:Gismo;product=hypothetical protein;protein_id=CAL94488.1;transl_table=11
AM406670.1	EMBL	gene	2053263	2055575	.	+	.	ID=gene1913;Name=azo1872;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1872
AM406670.1	EMBL	CDS	2053263	2055575	.	+	0	ID=cds1870;Parent=gene1913;Dbxref=EnsemblGenomes-Gn:azo1872,EnsemblGenomes-Tr:CAL94489,UniProtKB/TrEMBL:A1K6N4,NCBI_GP:CAL94489.1;Name=CAL94489.1;Note=Hypothetical phage tail tape measure protein. Controls phage tail length no signal peptide. no TMH;gbkey=CDS;product=hypothetical phage tail tape measure protein;protein_id=CAL94489.1;transl_table=11
AM406670.1	EMBL	gene	2055575	2056312	.	+	.	ID=gene1914;Name=azo1873;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1873
AM406670.1	EMBL	CDS	2055575	2056312	.	+	0	ID=cds1871;Parent=gene1914;Dbxref=EnsemblGenomes-Gn:azo1873,EnsemblGenomes-Tr:CAL94490,UniProtKB/TrEMBL:A1K6N5,NCBI_GP:CAL94490.1;Name=CAL94490.1;Note=Hypothetical protein%2C 26%25 Identity to TrEMBL%3BQ9PFZ1. No domains%2C repeats%2C motifs or features could be predicted above threshold.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94490.1;transl_table=11
AM406670.1	EMBL	gene	2056922	2057467	.	-	.	ID=gene1915;Name=rmlC;gbkey=Gene;gene=rmlC;gene_biotype=protein_coding;locus_tag=azo1874
AM406670.1	EMBL	CDS	2056922	2057467	.	-	0	ID=cds1872;Parent=gene1915;Dbxref=EnsemblGenomes-Gn:azo1874,EnsemblGenomes-Tr:CAL94491,GOA:A1K6N6,InterPro:IPR000888,InterPro:IPR011051,InterPro:IPR014710,UniProtKB/TrEMBL:A1K6N6,NCBI_GP:CAL94491.1;Name=CAL94491.1;Note=dTDP-4-dehydrorhamnose 35-epimerase (EC 5.1.3.13) (dTDP-4-keto-6- deoxyglucose 35-epimerase) (dTDP-L-rhamnose synthetase). InterPro: dTDP-4-dehydrorhamnose 35-epimerase%3B~High confidence in function and specificity;gbkey=CDS;gene=rmlC;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=CAL94491.1;transl_table=11
AM406670.1	EMBL	gene	2057467	2058351	.	-	.	ID=gene1916;Name=rmlA;gbkey=Gene;gene=rmlA;gene_biotype=protein_coding;locus_tag=azo1875
AM406670.1	EMBL	CDS	2057467	2058351	.	-	0	ID=cds1873;Parent=gene1916;Dbxref=EnsemblGenomes-Gn:azo1875,EnsemblGenomes-Tr:CAL94492,GOA:A1K6N7,InterPro:IPR005835,InterPro:IPR005907,InterPro:IPR029044,UniProtKB/TrEMBL:A1K6N7,NCBI_GP:CAL94492.1;Name=CAL94492.1;Note=Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) (dTDP-glucose synthase) (dTDP-glucose pyrophosphorylase).%3B~High confidence in function and specificity;gbkey=CDS;gene=rmlA;product=glucose-1-phosphate thymidylyltransferase;protein_id=CAL94492.1;transl_table=11
AM406670.1	EMBL	gene	2058363	2059253	.	-	.	ID=gene1917;Name=azo1876;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1876
AM406670.1	EMBL	CDS	2058363	2059253	.	-	0	ID=cds1874;Parent=gene1917;Dbxref=EnsemblGenomes-Gn:azo1876,EnsemblGenomes-Tr:CAL94493,GOA:A1K6N8,InterPro:IPR005913,InterPro:IPR016040,UniProtKB/TrEMBL:A1K6N8,NCBI_GP:CAL94493.1;Name=CAL94493.1;Note=Region start changed from 2059335 to 2059254 (-81 bases);gbkey=CDS;product=dTDP-4-dehydrorhamnose reductase;protein_id=CAL94493.1;transl_table=11
AM406670.1	EMBL	gene	2059250	2060326	.	-	.	ID=gene1918;Name=rmlB;gbkey=Gene;gene=rmlB;gene_biotype=protein_coding;locus_tag=azo1877
AM406670.1	EMBL	CDS	2059250	2060326	.	-	0	ID=cds1875;Parent=gene1918;Dbxref=EnsemblGenomes-Gn:azo1877,EnsemblGenomes-Tr:CAL94494,GOA:A1K6N9,InterPro:IPR001509,InterPro:IPR005888,InterPro:IPR016040,UniProtKB/TrEMBL:A1K6N9,NCBI_GP:CAL94494.1;Name=CAL94494.1;Note=dTDP-glucose 46-dehydratase (EC 4.2.1.46). InterPro: NAD dependent epimerase/dehydratase family%3B~High confidence in function and specificity;gbkey=CDS;gene=rmlB;product=dTDP-glucose 4%2C6-dehydratase;protein_id=CAL94494.1;transl_table=11
AM406670.1	EMBL	gene	2060555	2061478	.	+	.	ID=gene1919;Name=azo1878;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1878
AM406670.1	EMBL	CDS	2060555	2061478	.	+	0	ID=cds1876;Parent=gene1919;Dbxref=EnsemblGenomes-Gn:azo1878,EnsemblGenomes-Tr:CAL94495,InterPro:IPR007487,UniProtKB/TrEMBL:A1K6P0,NCBI_GP:CAL94495.1;Name=CAL94495.1;Note=Conserved hypothetical secreted protein. Homology to pp4172 of P. putida of 33%25 (trembl|Q88FC6). Pfam: DUF534 This is a family of putative secreted proteins of unknown function. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94495.1;transl_table=11
AM406670.1	EMBL	gene	2061475	2063547	.	+	.	ID=gene1920;Name=azo1879;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1879
AM406670.1	EMBL	CDS	2061475	2063547	.	+	0	ID=cds1877;Parent=gene1920;Dbxref=EnsemblGenomes-Gn:azo1879,EnsemblGenomes-Tr:CAL94496,GOA:A1K6P1,InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR003660,InterPro:IPR029787,UniProtKB/TrEMBL:A1K6P1,NCBI_GP:CAL94496.1;Name=CAL94496.1;Note=Conserved hypothetical signaling protein. Homology to Daro03001110 of Dechloromonas aromatica of 33%25 (gi|46141071|ref|ZP_00203851.1|(NBCI ENTREZ)). InterPro: IPR003660 HAMP. IPR000160 GGDEF. Pfam: PF00563 EAL domain. PF00672 HAMP. PF00990 GGDEF domain. TIGRFAM:TIGR00254 putative diguanylate cyclase (GGDEF) domain. Signal P reporting signal peptide. TMHMM reporting 3 transmembrane helices.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical signaling protein;protein_id=CAL94496.1;transl_table=11
AM406670.1	EMBL	gene	2063554	2064687	.	-	.	ID=gene1921;Name=azo1880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1880
AM406670.1	EMBL	CDS	2063554	2064687	.	-	0	ID=cds1878;Parent=gene1921;Dbxref=EnsemblGenomes-Gn:azo1880,EnsemblGenomes-Tr:CAL94497,GOA:A1K6P2,InterPro:IPR010791,InterPro:IPR023374,UniProtKB/TrEMBL:A1K6P2,NCBI_GP:CAL94497.1;Name=CAL94497.1;Note=Conserved hypothetical secreted protein. TREMBL:O86370 (36%25 identity)%3B TREMBL:Q7U0W8 (36%25 identity). No domains predicted. SignalP reporting signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94497.1;transl_table=11
AM406670.1	EMBL	gene	2064687	2067200	.	-	.	ID=gene1922;Name=azo1881;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1881
AM406670.1	EMBL	CDS	2064687	2067200	.	-	0	ID=cds1879;Parent=gene1922;Dbxref=EnsemblGenomes-Gn:azo1881,EnsemblGenomes-Tr:CAL94498,GOA:A1K6P3,InterPro:IPR003838,InterPro:IPR025857,UniProtKB/TrEMBL:A1K6P3,NCBI_GP:CAL94498.1;Name=CAL94498.1;Note=Similar to TREMBL:Q82US4 (29%25 identity). Pfam (DUF214): Predicted permease. TMHMM predicting 10 transmembrane helices.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease protein;protein_id=CAL94498.1;transl_table=11
AM406670.1	EMBL	gene	2067197	2067874	.	-	.	ID=gene1923;Name=azo1882;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1882
AM406670.1	EMBL	CDS	2067197	2067874	.	-	0	ID=cds1880;Parent=gene1923;Dbxref=EnsemblGenomes-Gn:azo1882,EnsemblGenomes-Tr:CAL94499,GOA:A1K6P4,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K6P4,NCBI_GP:CAL94499.1;Name=CAL94499.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q89X55 (42%25 identity)%3B SWISSPROT:P31219 (40%25 identity). InterPro (IPR003439): ABC transporter. InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). Pfam (PF00005): ABC transporter.%3B~Family membership;gbkey=CDS;product=ABC transporter%2C ATP-binding protein;protein_id=CAL94499.1;transl_table=11
AM406670.1	EMBL	gene	2067967	2068812	.	+	.	ID=gene1924;Name=crtB1;gbkey=Gene;gene=crtB1;gene_biotype=protein_coding;locus_tag=azo1883
AM406670.1	EMBL	CDS	2067967	2068812	.	+	0	ID=cds1881;Parent=gene1924;Dbxref=EnsemblGenomes-Gn:azo1883,EnsemblGenomes-Tr:CAL94500,GOA:A1K6P5,InterPro:IPR002060,InterPro:IPR008949,InterPro:IPR017827,UniProtKB/TrEMBL:A1K6P5,NCBI_GP:CAL94500.1;Name=CAL94500.1;Note=Putative phytoene synthase. Homology to crtB of Synechococcus sp. of 30%25 (SWISSPROT:CRTB_SYNP7 Is involved in the synthesis of carotenoids. Catalyzes the reaction from prephytoene diphosphate to phytoene. Pfam: Squalene/phytoene synthase no singal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=crtB1;product=putative phytoene synthase;protein_id=CAL94500.1;transl_table=11
AM406670.1	EMBL	gene	2068913	2069746	.	+	.	ID=gene1925;Name=crtB2;gbkey=Gene;gene=crtB2;gene_biotype=protein_coding;locus_tag=azo1884
AM406670.1	EMBL	CDS	2068913	2069746	.	+	0	ID=cds1882;Parent=gene1925;Dbxref=EnsemblGenomes-Gn:azo1884,EnsemblGenomes-Tr:CAL94501,GOA:A1K6P6,InterPro:IPR002060,InterPro:IPR008949,InterPro:IPR017828,InterPro:IPR019845,UniProtKB/TrEMBL:A1K6P6,NCBI_GP:CAL94501.1;Name=CAL94501.1;Note=Putative phytoene synthase. Homology to crtB of Synechococcus sp. of 35%25 (SWISSPROT:CRTB_SYNP7 Is involved in the synthesis of carotenoids. Catalyzes the reaction from prephytoene diphosphate to phytoene. Pfam: Squalene/phytoene synthase no singal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=crtB2;product=putative phytoene synthase;protein_id=CAL94501.1;transl_table=11
AM406670.1	EMBL	gene	2069751	2071058	.	+	.	ID=gene1926;Name=azo1885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1885
AM406670.1	EMBL	CDS	2069751	2071058	.	+	0	ID=cds1883;Parent=gene1926;Dbxref=EnsemblGenomes-Gn:azo1885,EnsemblGenomes-Tr:CAL94502,GOA:A1K6P7,InterPro:IPR002937,InterPro:IPR017830,UniProtKB/TrEMBL:A1K6P7,NCBI_GP:CAL94502.1;Name=CAL94502.1;Note=Putative oxidoreductase precursor%2C 27%25 identity (38%25 similarity) to TrEMBL%3BQ6N3F3. TrEMBL%3BQ9RI54. Has PF00070%3BPyridine nucleotide-disulphide oxidoreductase%3B IPR001327 FAD_pyr_redox:This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Has PF01593%2CFlavin containing amine oxidoreductase%3B(IPR002937%2CAmino_oxidase):This family consists of various amine oxidases%2C including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation%3B these include various neurotransmitters%2Cneurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants%2C bacteria and protozoa oxidase spermidine and spermine to an aminobutyral%2C diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Has PF01494%2C FAD binding domain%3B(IPR002938 Moxy_FAD_binding)%3BThis domain is involved in FAD binding in a number of enzymes.%3B~Family membership;gbkey=CDS;product=putative oxidoreductase precursor;protein_id=CAL94502.1;transl_table=11
AM406670.1	EMBL	gene	2071071	2072195	.	-	.	ID=gene1927;Name=azo1886;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1886
AM406670.1	EMBL	CDS	2071071	2072195	.	-	0	ID=cds1884;Parent=gene1927;Dbxref=EnsemblGenomes-Gn:azo1886,EnsemblGenomes-Tr:CAL94503,GOA:A1K6P8,InterPro:IPR000834,UniProtKB/TrEMBL:A1K6P8,NCBI_GP:CAL94503.1;Name=CAL94503.1;Note=Conserved hypothetical protein. Homology to rsc2008 of R. solanacearum of 59%25 (trembl|Q8XXV5). no domain predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94503.1;transl_table=11
AM406670.1	EMBL	gene	2072225	2073010	.	-	.	ID=gene1928;Name=azo1887;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1887
AM406670.1	EMBL	CDS	2072225	2073010	.	-	0	ID=cds1885;Parent=gene1928;Dbxref=EnsemblGenomes-Gn:azo1887,EnsemblGenomes-Tr:CAL94504,InterPro:IPR005583,NCBI_GP:CAL94504.1;Name=CAL94504.1;Note=Conserved hypothetical protein. Homology to RS03577 of R.solanacearum of 66%25 (tremble:Q8XXV4). Has PF03883%2CProtein of unknown function (DUF328)%3B IPR005583 %3BMembers of this family are functionally uncharacterised. They are about 250 amino acids in length. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94504.1;transl_table=11
AM406670.1	EMBL	gene	2073125	2074477	.	+	.	ID=gene1929;Name=bioA;gbkey=Gene;gene=bioA;gene_biotype=protein_coding;locus_tag=azo1888
AM406670.1	EMBL	CDS	2073125	2074477	.	+	0	ID=cds1886;Parent=gene1929;Dbxref=EnsemblGenomes-Gn:azo1888,EnsemblGenomes-Tr:CAL94505,GOA:A1K6Q0,InterPro:IPR005814,InterPro:IPR005815,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K6Q0,NCBI_GP:CAL94505.1;Name=CAL94505.1;Note=Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (7%2C8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase). TGIRFAM: bioA: adenosylmethionine--8-amino-7-oxononanoate transaminase%3B~High confidence in function and specificity;gbkey=CDS;gene=bioA;product=Adenosylmethionine--8-amino-7-oxononanoate transaminase;protein_id=CAL94505.1;transl_table=11
AM406670.1	EMBL	gene	2074477	2075649	.	+	.	ID=gene1930;Name=bioF;gbkey=Gene;gene=bioF;gene_biotype=protein_coding;locus_tag=azo1889
AM406670.1	EMBL	CDS	2074477	2075649	.	+	0	ID=cds1887;Parent=gene1930;Dbxref=EnsemblGenomes-Gn:azo1889,EnsemblGenomes-Tr:CAL94506,GOA:A1K6Q1,InterPro:IPR004723,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR022834,NCBI_GP:CAL94506.1;Name=CAL94506.1;Note=8-amino-7-oxononanoate synthase (EC 2.3.1.47) (AONS) (8-amino-7- ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase) (7-KAP synthetase) (L-alanine--pimelyl CoA ligase). InterPro: Aminotransferases class-I bioF: 8-amino-7-oxononanoate synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=bioF;product=8-amino-7-oxononanoate synthase;protein_id=CAL94506.1;transl_table=11
AM406670.1	EMBL	gene	2075642	2076406	.	+	.	ID=gene1931;Name=bioH;gbkey=Gene;gene=bioH;gene_biotype=protein_coding;locus_tag=azo1890
AM406670.1	EMBL	CDS	2075642	2076406	.	+	0	ID=cds1888;Parent=gene1931;Dbxref=EnsemblGenomes-Gn:azo1890,EnsemblGenomes-Tr:CAL94507,InterPro:IPR000073,InterPro:IPR029058,UniProtKB/TrEMBL:A1K6Q2,NCBI_GP:CAL94507.1;Name=CAL94507.1;Note=BioH protein.Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). Seems to be implicated in the early steps of biotin biosynthesis.%3B~Function unclear;gbkey=CDS;gene=bioH;product=BioH protein;protein_id=CAL94507.1;transl_table=11
AM406670.1	EMBL	gene	2076399	2077193	.	+	.	ID=gene1932;Name=bioC1;gbkey=Gene;gene=bioC1;gene_biotype=protein_coding;locus_tag=azo1891
AM406670.1	EMBL	CDS	2076399	2077193	.	+	0	ID=cds1889;Parent=gene1932;Dbxref=EnsemblGenomes-Gn:azo1891,EnsemblGenomes-Tr:CAL94508,GOA:A1K6Q3,InterPro:IPR011814,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:A1K6Q3,NCBI_GP:CAL94508.1;Name=CAL94508.1;Note=Biotin synthesis protein bioC. bioc is involved in an early%2C but chemically unexplored%2C step in the conversion of pimelic acid to biotin.%3B~Specificity unclear;gbkey=CDS;gene=bioC1;product=biotin synthesis protein;protein_id=CAL94508.1;transl_table=11
AM406670.1	EMBL	gene	2077190	2077876	.	+	.	ID=gene1933;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=azo1892
AM406670.1	EMBL	CDS	2077190	2077876	.	+	0	ID=cds1890;Parent=gene1933;Dbxref=EnsemblGenomes-Gn:azo1892,EnsemblGenomes-Tr:CAL94509,GOA:A1K6Q4,InterPro:IPR004472,InterPro:IPR027417,UniProtKB/TrEMBL:A1K6Q4,NCBI_GP:CAL94509.1;Name=CAL94509.1;Note=Dethiobiotin synthetase (EC 6.3.3.3) (DTB synthetase) (DTBS). InterPro: Cobyrinic acid ac-diamide synthase bioD: dethiobiotin synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=bioD;product=dethiobiotin synthase;protein_id=CAL94509.1;transl_table=11
AM406670.1	EMBL	gene	2077881	2078672	.	-	.	ID=gene1934;Name=azo1893;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1893
AM406670.1	EMBL	CDS	2077881	2078672	.	-	0	ID=cds1891;Parent=gene1934;Dbxref=EnsemblGenomes-Gn:azo1893,EnsemblGenomes-Tr:CAL94510,GOA:A1K6Q5,InterPro:IPR001537,InterPro:IPR013123,InterPro:IPR029026,InterPro:IPR029028,InterPro:IPR029064,UniProtKB/TrEMBL:A1K6Q5,NCBI_GP:CAL94510.1;Name=CAL94510.1;Note=Region start changed from 2079087 to 2078673 (-414 bases);gbkey=CDS;product=RNA methyltransferase;protein_id=CAL94510.1;transl_table=11
AM406670.1	EMBL	gene	2078681	2079136	.	-	.	ID=gene1935;Name=azo1894;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1894
AM406670.1	EMBL	CDS	2078681	2079136	.	-	0	ID=cds1892;Parent=gene1935;Dbxref=EnsemblGenomes-Gn:azo1894,EnsemblGenomes-Tr:CAL94511,GOA:A1K6Q6,InterPro:IPR008457,UniProtKB/TrEMBL:A1K6Q6,NCBI_GP:CAL94511.1;Name=CAL94511.1;Note=Conserved hypothetical membrane protein. Homology to PA1044 of P. aeruginosa of 44%25 (trembl|Q9I4T0). No domains predicted. Signal peptide. 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94511.1;transl_table=11
AM406670.1	EMBL	gene	2079133	2079747	.	-	.	ID=gene1936;Name=rnhB;gbkey=Gene;gene=rnhB;gene_biotype=protein_coding;locus_tag=azo1895
AM406670.1	EMBL	CDS	2079133	2079747	.	-	0	ID=cds1893;Parent=gene1936;Dbxref=EnsemblGenomes-Gn:azo1895,EnsemblGenomes-Tr:CAL94512,GOA:A1K6Q7,InterPro:IPR001352,InterPro:IPR012337,InterPro:IPR022898,InterPro:IPR024567,NCBI_GP:CAL94512.1;Name=CAL94512.1;Note=Ribonuclease HII (RNase HII). This enzyme is an endonuclease that degrades the RNA of RNA-DNA hybrids specifically (By similarity). TIGR00729: ribonuclease HII.%3B~High confidence in function and specificity;gbkey=CDS;gene=rnhB;product=Ribonuclease H;protein_id=CAL94512.1;transl_table=11
AM406670.1	EMBL	gene	2079720	2080895	.	-	.	ID=gene1937;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=azo1896
AM406670.1	EMBL	CDS	2079720	2080895	.	-	0	ID=cds1894;Parent=gene1937;Dbxref=EnsemblGenomes-Gn:azo1896,EnsemblGenomes-Tr:CAL94513,GOA:A1K6Q8,InterPro:IPR003835,NCBI_GP:CAL94513.1;Name=CAL94513.1;Note=Probable lipid-A-disaccharide synthase. Homology to lpxB of E. coli of 45%25 (sprot|LPXB_ECOLI). Condensation of UDP-23-diacylglucosamine and 23-diacylglucosamine-1-phosphate to form lipid A disaccharide a precursor of lipid A a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (By similarity). InterPro: Lipid-A-disaccharide synthetase Tigrfam: lpxB: lipid A disaccharide synthase Pfam: Lipid-A-disaccharide synthetase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=lpxB;product=probable lipid-A-disaccharide synthase;protein_id=CAL94513.1;transl_table=11
AM406670.1	EMBL	gene	2080900	2081670	.	-	.	ID=gene1938;Name=lpxA;gbkey=Gene;gene=lpxA;gene_biotype=protein_coding;locus_tag=azo1897
AM406670.1	EMBL	CDS	2080900	2081670	.	-	0	ID=cds1895;Parent=gene1938;Dbxref=EnsemblGenomes-Gn:azo1897,EnsemblGenomes-Tr:CAL94514,GOA:A1K6Q9,InterPro:IPR001451,InterPro:IPR010137,InterPro:IPR011004,InterPro:IPR029098,UniProtKB/TrEMBL:A1K6Q9,NCBI_GP:CAL94514.1;Name=CAL94514.1;Note=Probable acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase. Homology to lpxA of E. coli of 56%25 (sprot|LPXA_ECOLI) Involved in the biosynthesis of lipid A a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. InterPro: Bacterial transferase hexapeptide repeat (IPR001451) Pfam: Bacterial transferase hexapeptide repeat no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=lpxA;product=probable acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase;protein_id=CAL94514.1;transl_table=11
AM406670.1	EMBL	gene	2081667	2082104	.	-	.	ID=gene1939;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=azo1898
AM406670.1	EMBL	CDS	2081667	2082104	.	-	0	ID=cds1896;Parent=gene1939;Dbxref=EnsemblGenomes-Gn:azo1898,EnsemblGenomes-Tr:CAL94515,GOA:A1K6R0,InterPro:IPR010084,InterPro:IPR013114,InterPro:IPR029069,NCBI_GP:CAL94515.1;Name=CAL94515.1;Note=Function:- Involved in saturated fatty acids biosynthesis. Entry name :- FABZ_ECOLI Primary accession number :-P21774 Identities %3D 81/140 (57%25) InterPro IPR006683%3B Thioestr_supf. Pfam PF03061%3B 4HBT%3B 1. Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=fabZ;product=probable (3R)-hydroxymyristol acyl carrier protein dehydratase;protein_id=CAL94515.1;transl_table=11
AM406670.1	EMBL	gene	2082110	2083135	.	-	.	ID=gene1940;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=azo1899
AM406670.1	EMBL	CDS	2082110	2083135	.	-	0	ID=cds1897;Parent=gene1940;Dbxref=EnsemblGenomes-Gn:azo1899,EnsemblGenomes-Tr:CAL94516,GOA:A1K6R1,InterPro:IPR001451,InterPro:IPR007691,InterPro:IPR011004,InterPro:IPR018357,InterPro:IPR020573,NCBI_GP:CAL94516.1;Name=CAL94516.1;Note=UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. Homology to lpxD of E. coli of 46%25 (sprot|LPXD_ECOLI) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] %3D UDP-2%2C3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] InterPro: Bacterial transferase hexapeptide repeat (IPR001451) Pfam: Bacterial transferase hexapeptide repeat no signal peptide no TMHs BCCP: acetyl-CoA carboxylase biotin c%3B~High confidence in function and specificity;gbkey=CDS;gene=lpxD;product=probable UDP-3-O-[3-hydroxymyristol] glucosamine N-acyltransferase;protein_id=CAL94516.1;transl_table=11
AM406670.1	EMBL	gene	2083149	2083649	.	-	.	ID=gene1941;Name=ompH;gbkey=Gene;gene=ompH;gene_biotype=protein_coding;locus_tag=azo1900
AM406670.1	EMBL	CDS	2083149	2083649	.	-	0	ID=cds1898;Parent=gene1941;Dbxref=EnsemblGenomes-Gn:azo1900,EnsemblGenomes-Tr:CAL94517,GOA:A1K6R2,InterPro:IPR005632,InterPro:IPR024930,UniProtKB/TrEMBL:A1K6R2,NCBI_GP:CAL94517.1;Name=CAL94517.1;Note=Probable outer membrane protein. Homology to ompH of Y. enterocolitica of 30%25 (sprot|OMPH_YEREN). Pfam: outer membrane protein (OmpH-like) signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ompH;product=probable outer membrane protein;protein_id=CAL94517.1;transl_table=11
AM406670.1	EMBL	gene	2083683	2085962	.	-	.	ID=gene1942;Name=oma;gbkey=Gene;gene=oma;gene_biotype=protein_coding;locus_tag=azo1901
AM406670.1	EMBL	CDS	2083683	2085962	.	-	0	ID=cds1899;Parent=gene1942;Dbxref=EnsemblGenomes-Gn:azo1901,EnsemblGenomes-Tr:CAL94518,GOA:A1K6R3,InterPro:IPR000184,InterPro:IPR010827,InterPro:IPR023707,UniProtKB/TrEMBL:A1K6R3,NCBI_GP:CAL94518.1;Name=CAL94518.1;Note=InterPro: Bacterial surface antigen (D15)%3B~Function unclear;gbkey=CDS;gene=oma;product=outer membrane protein;protein_id=CAL94518.1;transl_table=11
AM406670.1	EMBL	gene	2086001	2087365	.	-	.	ID=gene1943;Name=azo1902;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1902
AM406670.1	EMBL	CDS	2086001	2087365	.	-	0	ID=cds1900;Parent=gene1943;Dbxref=EnsemblGenomes-Gn:azo1902,EnsemblGenomes-Tr:CAL94519,GOA:A1K6R4,InterPro:IPR001478,InterPro:IPR004387,InterPro:IPR008915,UniProtKB/TrEMBL:A1K6R4,NCBI_GP:CAL94519.1;Name=CAL94519.1;Note=Conserved hypothetical membrane-associated zinc metalloprotease. Homology to ne1711 of N. europaea of 51%25 (trembl|Q82U02). Tigrfam: TIGR00054: membrane-associated zinc metalloprotease. Pfam: PDZ domain (Also known as DHR or GLGF). no signal peptide. 4 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical membrane-associated zinc metalloprotease;protein_id=CAL94519.1;transl_table=11
AM406670.1	EMBL	gene	2087365	2088564	.	-	.	ID=gene1944;Name=dxr;gbkey=Gene;gene=dxr;gene_biotype=protein_coding;locus_tag=azo1903
AM406670.1	EMBL	CDS	2087365	2088564	.	-	0	ID=cds1901;Parent=gene1944;Dbxref=EnsemblGenomes-Gn:azo1903,EnsemblGenomes-Tr:CAL94520,GOA:A1K6R5,InterPro:IPR003821,InterPro:IPR013512,InterPro:IPR013644,InterPro:IPR016040,InterPro:IPR026877,UniProtKB/TrEMBL:A1K6R5,NCBI_GP:CAL94520.1;Name=CAL94520.1;Note=Function:-Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) (By similarity). Entry name :- DXR_PSEAE Primary accession number :- Q9KGU6 Identity:- 65%25 InterPro:-IPR003821%3B DXP_redisomrase. Pfam :- PF02670%3B DXP_reductoisom%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.014 Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=dxr;product=probable 1-deoxy-D-xylulose 5-phosphate reductoisomerase;protein_id=CAL94520.1;transl_table=11
AM406670.1	EMBL	gene	2088581	2089405	.	-	.	ID=gene1945;Name=cdsA;gbkey=Gene;gene=cdsA;gene_biotype=protein_coding;locus_tag=azo1904
AM406670.1	EMBL	CDS	2088581	2089405	.	-	0	ID=cds1902;Parent=gene1945;Dbxref=EnsemblGenomes-Gn:azo1904,EnsemblGenomes-Tr:CAL94521,GOA:A1K6R6,InterPro:IPR000374,UniProtKB/TrEMBL:A1K6R6,NCBI_GP:CAL94521.1;Name=CAL94521.1;Note=Phosphatidate cytidylyltransferase :- catalytic activity ctp + phosphatidate %3D diphosphate + cdp-diacylglycerol. pathway :-phospholipid biosynthesis. Entry name:- CDSA_ECOLI Primary accession number :- P06466 InterPro:- IPR000374%3B PC_trans. Identities %3D 89/252 (35%25) Pfam PF01148%3B CTP_transf_1%3B 1. Number of predicted TMHs: 7 Prediction: Signal peptide Signal peptide probability: 1.0%3B~Family membership;gbkey=CDS;gene=cdsA;product=putative phosphatidate cytidylyltransferase;protein_id=CAL94521.1;transl_table=11
AM406670.1	EMBL	gene	2089398	2090198	.	-	.	ID=gene1946;Name=uppS;gbkey=Gene;gene=uppS;gene_biotype=protein_coding;locus_tag=azo1905
AM406670.1	EMBL	CDS	2089398	2090198	.	-	0	ID=cds1903;Parent=gene1946;Dbxref=EnsemblGenomes-Gn:azo1905,EnsemblGenomes-Tr:CAL94522,GOA:A1K6R7,InterPro:IPR001441,InterPro:IPR018520,UniProtKB/TrEMBL:A1K6R7,NCBI_GP:CAL94522.1;Name=CAL94522.1;Note=Undecaprenyl pyrophosphate synthetase :- Generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP). UPP is the precursor of the carrier lipid for peptidoglycan synthesis (By similarity). Identities %3D 124/228 (54%25) Entry name SWISSPROT:UPPS_ECOLI Prim. accession # P60472 InterPro :- IPR001441%3B UPP_synth. Pfam:- PF01255%3B UPP_synthetase%3B 1. Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.0%3B~Family membership;gbkey=CDS;gene=uppS;product=probable undecaprenyl pyrophosphate synthetase;protein_id=CAL94522.1;transl_table=11
AM406670.1	EMBL	gene	2090246	2090803	.	-	.	ID=gene1947;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=azo1906
AM406670.1	EMBL	CDS	2090246	2090803	.	-	0	ID=cds1904;Parent=gene1947;Dbxref=EnsemblGenomes-Gn:azo1906,EnsemblGenomes-Tr:CAL94523,GOA:A1K6R8,InterPro:IPR002661,InterPro:IPR023584,NCBI_GP:CAL94523.1;Name=CAL94523.1;Note=Ribosome recycling factor (Ribosome releasing factor) (RRF). Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another%3B~High confidence in function and specificity;gbkey=CDS;gene=frr;product=Frr protein;protein_id=CAL94523.1;transl_table=11
AM406670.1	EMBL	gene	2090814	2091530	.	-	.	ID=gene1948;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=azo1907
AM406670.1	EMBL	CDS	2090814	2091530	.	-	0	ID=cds1905;Parent=gene1948;Dbxref=EnsemblGenomes-Gn:azo1907,EnsemblGenomes-Tr:CAL94524,GOA:A1K6R9,InterPro:IPR001048,InterPro:IPR011817,InterPro:IPR015963,NCBI_GP:CAL94524.1;Name=CAL94524.1;Note=Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase) InterPro: Aspartokinase superfamily%3B~High confidence in function and specificity;gbkey=CDS;gene=pyrH;product=uridylate kinase;protein_id=CAL94524.1;transl_table=11
AM406670.1	EMBL	gene	2091541	2092434	.	-	.	ID=gene1949;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=azo1908
AM406670.1	EMBL	CDS	2091541	2092434	.	-	0	ID=cds1906;Parent=gene1949;Dbxref=EnsemblGenomes-Gn:azo1908,EnsemblGenomes-Tr:CAL94525,GOA:A1K6S0,InterPro:IPR000449,InterPro:IPR001816,InterPro:IPR009060,InterPro:IPR014039,InterPro:IPR018101,NCBI_GP:CAL94525.1;Name=CAL94525.1;Note=Elongation factor Ts (EF-Ts). Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.%3B~High confidence in function and specificity;gbkey=CDS;gene=tsf;product=elongation factor EF-Ts;protein_id=CAL94525.1;transl_table=11
AM406670.1	EMBL	gene	2092546	2093301	.	-	.	ID=gene1950;Name=azo1909;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1909
AM406670.1	EMBL	CDS	2092546	2093301	.	-	0	ID=cds1907;Parent=gene1950;Dbxref=EnsemblGenomes-Gn:azo1909,EnsemblGenomes-Tr:CAL94526,GOA:A1K6S1,InterPro:IPR001865,InterPro:IPR005706,InterPro:IPR018130,InterPro:IPR023591,NCBI_GP:CAL94526.1;Name=CAL94526.1;Note=30S ribosomal protein S2. InterPro: Ribosomal protein S2%3B~High confidence in function and specificity;gbkey=CDS;product=30S ribosomal protein S2;protein_id=CAL94526.1;transl_table=11
AM406670.1	EMBL	gene	2093581	2094399	.	+	.	ID=gene1951;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=azo1910
AM406670.1	EMBL	CDS	2093581	2094399	.	+	0	ID=cds1908;Parent=gene1951;Dbxref=EnsemblGenomes-Gn:azo1910,EnsemblGenomes-Tr:CAL94527,GOA:A1K6S2,InterPro:IPR000994,InterPro:IPR001714,InterPro:IPR002467,UniProtKB/TrEMBL:A1K6S2,NCBI_GP:CAL94527.1;Name=CAL94527.1;Note=Methionine aminopeptidase (EC 3.4.11.18) (Peptidase M). Removes the amino-terminal methionine from nascent proteins. met_pdase_I: methionine aminopeptidase%3B~High confidence in function and specificity;gbkey=CDS;gene=map;product=methionyl aminopeptidase;protein_id=CAL94527.1;transl_table=11
AM406670.1	EMBL	gene	2094419	2097004	.	+	.	ID=gene1952;Name=glnD;gbkey=Gene;gene=glnD;gene_biotype=protein_coding;locus_tag=azo1911
AM406670.1	EMBL	CDS	2094419	2097004	.	+	0	ID=cds1909;Parent=gene1952;Dbxref=EnsemblGenomes-Gn:azo1911,EnsemblGenomes-Tr:CAL94528,GOA:A1K6S3,InterPro:IPR002912,InterPro:IPR002934,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR010043,InterPro:IPR013546,UniProtKB/TrEMBL:A1K6S3,NCBI_GP:CAL94528.1;Name=CAL94528.1;Note=Putative protein-PII uridylyltransferase. Homology to glnD of E. coli of 37%25 (sprot|GLND_ECOLI) Modifies by uridylylation or deuridylylation the PII (glnB) regulatory protein (By similarity). InterPro: Metal dependent phosphohydrolase HD domain (IPR003607)%3B HD domain (IPR006674)%3B ACT domain (IPR002912) Pfam: ACT domain%3B HD domain no signal peptide no TMHs recN: DNA repair protein RecN%3B~Family membership;gbkey=CDS;gene=glnD;product=putative protein-PII uridylyltransferase;protein_id=CAL94528.1;transl_table=11
AM406670.1	EMBL	gene	2097065	2097700	.	-	.	ID=gene1953;Name=azo1912;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1912
AM406670.1	EMBL	CDS	2097065	2097700	.	-	0	ID=cds1910;Parent=gene1953;Dbxref=EnsemblGenomes-Gn:azo1912,EnsemblGenomes-Tr:CAL94529,GOA:A1K6S4,InterPro:IPR005134,InterPro:IPR020761,InterPro:IPR020765,UniProtKB/TrEMBL:A1K6S4,NCBI_GP:CAL94529.1;Name=CAL94529.1;Note=Conserved hypothetical membrane protein. Homology to RPA0231 of Rhodopseudomonas palustris of 39%25 (trembl|Q6ND78). Has PF03350%2C(IPR005134) Uncharacterized protein family%2C UPF0114: This conserved hypothetical protein family with four predicted transmembrane regions is found in E. coli%2C Haemophilus influenzae%2C and Helicobacter pylori%2C among completed genomes. No signal peptide. 3 TMHs;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94529.1;transl_table=11
AM406670.1	EMBL	gene	2097850	2099463	.	+	.	ID=gene1954;Name=azo1913;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1913
AM406670.1	EMBL	CDS	2097850	2099463	.	+	0	ID=cds1911;Parent=gene1954;Dbxref=EnsemblGenomes-Gn:azo1913,EnsemblGenomes-Tr:CAL94530,GOA:A1K6S5,InterPro:IPR006076,InterPro:IPR028348,UniProtKB/TrEMBL:A1K6S5,NCBI_GP:CAL94530.1;Name=CAL94530.1;Note=Conserved hypothetical protein. Homology to pp1134 of P. putida of 77%25 (trembl|Q88NS1). Pfam: Phytoene dehydrogenase related enzyme. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94530.1;transl_table=11
AM406670.1	EMBL	gene	2099467	2100810	.	-	.	ID=gene1955;Name=dctD2;gbkey=Gene;gene=dctD2;gene_biotype=protein_coding;locus_tag=azo1914
AM406670.1	EMBL	CDS	2099467	2100810	.	-	0	ID=cds1912;Parent=gene1955;Dbxref=EnsemblGenomes-Gn:azo1914,EnsemblGenomes-Tr:CAL94531,GOA:A1K6S6,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR025662,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K6S6,NCBI_GP:CAL94531.1;Name=CAL94531.1;Note=C4-dicarboxylate transport transcriptional regulatory protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=dctD2;product=transcriptional regulatory protein;protein_id=CAL94531.1;transl_table=11
AM406670.1	EMBL	gene	2100821	2102704	.	-	.	ID=gene1956;Name=dctB2;gbkey=Gene;gene=dctB2;gene_biotype=protein_coding;locus_tag=azo1915
AM406670.1	EMBL	CDS	2100821	2102704	.	-	0	ID=cds1913;Parent=gene1956;Dbxref=EnsemblGenomes-Gn:azo1915,EnsemblGenomes-Tr:CAL94532,GOA:A1K6S7,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR017055,InterPro:IPR029151,UniProtKB/TrEMBL:A1K6S7,NCBI_GP:CAL94532.1;Name=CAL94532.1;Note=C4-dicarboxylate transport sensor protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=dctB2;product=sensor histidine kinase;protein_id=CAL94532.1;transl_table=11
AM406670.1	EMBL	gene	2102656	2103072	.	-	.	ID=gene1957;Name=azo1916;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1916
AM406670.1	EMBL	CDS	2102656	2103072	.	-	0	ID=cds1914;Parent=gene1957;Dbxref=EnsemblGenomes-Gn:azo1916,EnsemblGenomes-Tr:CAL94533,InterPro:IPR015001,UniProtKB/TrEMBL:A1K6S8,NCBI_GP:CAL94533.1;Name=CAL94533.1;Note=Conserved hypothetical secreted protein. Homology to blr1303 of B. japonicum of 38%25 (trembl|Q89UV6(SRS)) No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94533.1;transl_table=11
AM406670.1	EMBL	gene	2103072	2105108	.	-	.	ID=gene1958;Name=azo1917;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1917
AM406670.1	EMBL	CDS	2103072	2105108	.	-	0	ID=cds1915;Parent=gene1958;Dbxref=EnsemblGenomes-Gn:azo1917,EnsemblGenomes-Tr:CAL94534,InterPro:IPR010656,InterPro:IPR011853,UniProtKB/TrEMBL:A1K6S9,NCBI_GP:CAL94534.1;Name=CAL94534.1;Note=Conserved hypothetical membrane protein. Homology to so0455 of S. oneidensis of 65%25 (trembl|Q8EJK8). Tigrfam: dctM: TRAP dicarboxylate transporter-DctM subunit. Pfam: TRAP C4-dicarboxylate transport (Dct) system permease DctM subunit. This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. no signal peptide. 17 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94534.1;transl_table=11
AM406670.1	EMBL	gene	2105234	2106184	.	-	.	ID=gene1959;Name=azo1918;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1918
AM406670.1	EMBL	CDS	2105234	2106184	.	-	0	ID=cds1916;Parent=gene1959;Dbxref=EnsemblGenomes-Gn:azo1918,EnsemblGenomes-Tr:CAL94535,InterPro:IPR011852,InterPro:IPR015168,UniProtKB/TrEMBL:A1K6T0,NCBI_GP:CAL94535.1;Name=CAL94535.1;Note=Conserved hypothetical secreted protein. Homology to pp3954 pf P. putida of 64%25 (trembl|Q88FX3). no domains predicted. singal peptide. TMH in signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94535.1;transl_table=11
AM406670.1	EMBL	gene	2106499	2107608	.	+	.	ID=gene1960;Name=azo1919;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1919
AM406670.1	EMBL	CDS	2106499	2107608	.	+	0	ID=cds1917;Parent=gene1960;Dbxref=EnsemblGenomes-Gn:azo1919,EnsemblGenomes-Tr:CAL94536,GOA:A1K6T1,InterPro:IPR006076,InterPro:IPR016040,UniProtKB/TrEMBL:A1K6T1,NCBI_GP:CAL94536.1;Name=CAL94536.1;Note=Hypothetical protein MG039 homolog (D09_orf384). D-amino acid oxidase (EC: 1.4.3.3) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterized and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. InterPro: D-amino acid oxidase Putative conserved exported protein. TREMBL:Q7WG75: 55%25 identity%2C65%25 similarity. TREMBLnew:CAE29609. Pfam:NAD binding FAD dependent oxidoreductase. TIGRFAM:UDP-GALP mutase. Signal P predicted signal peptide and TMHMM predicted transmembrane helices. gidA: glucose-inhibited division prot%3B~Specificity unclear;gbkey=CDS;product=probable oxidoreductase;protein_id=CAL94536.1;transl_table=11
AM406670.1	EMBL	gene	2107621	2109078	.	-	.	ID=gene1961;Name=gabD2;gbkey=Gene;gene=gabD2;gene_biotype=protein_coding;locus_tag=azo1920
AM406670.1	EMBL	CDS	2107621	2109078	.	-	0	ID=cds1918;Parent=gene1961;Dbxref=EnsemblGenomes-Gn:azo1920,EnsemblGenomes-Tr:CAL94537,GOA:A1K6T2,InterPro:IPR010102,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR029510,UniProtKB/TrEMBL:A1K6T2,NCBI_GP:CAL94537.1;Name=CAL94537.1;Note=Probable succinate-semialdehyde dehydrogenase [NAD(P)+]. Homology to gabD of P. aeruginosa of 62%25 (trembl|Q9RBF6) Catalysis of the reaction: succinate semialdehyde + NAD(P)+ + H2O %3D succinate + NAD(P)H + H+. Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=gabD2;product=probable succinate-semialdehyde dehydrogenase [NAD(P)+];protein_id=CAL94537.1;transl_table=11
AM406670.1	EMBL	gene	2109292	2110215	.	-	.	ID=gene1962;Name=etfA2;gbkey=Gene;gene=etfA2;gene_biotype=protein_coding;locus_tag=azo1921
AM406670.1	EMBL	CDS	2109292	2110215	.	-	0	ID=cds1919;Parent=gene1962;Dbxref=EnsemblGenomes-Gn:azo1921,EnsemblGenomes-Tr:CAL94538,GOA:A1K6T3,InterPro:IPR001308,InterPro:IPR014729,InterPro:IPR014730,InterPro:IPR014731,InterPro:IPR018206,InterPro:IPR029035,UniProtKB/TrEMBL:A1K6T3,NCBI_GP:CAL94538.1;Name=CAL94538.1;Note=Probable electron transfer flavoprotein%2C alpha subunit. Homology to etfA of B. japonicum of 66%25 (sprot|ETFA_BRAJA) The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein alpha-subunit (IPR001308) Pfam: Electron transfer flavoprotein alpha subunit no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=etfA2;product=probable electron transfer flavoprotein%2C alpha-subunit;protein_id=CAL94538.1;transl_table=11
AM406670.1	EMBL	gene	2110306	2111055	.	-	.	ID=gene1963;Name=etfB2;gbkey=Gene;gene=etfB2;gene_biotype=protein_coding;locus_tag=azo1922
AM406670.1	EMBL	CDS	2110306	2111055	.	-	0	ID=cds1920;Parent=gene1963;Dbxref=EnsemblGenomes-Gn:azo1922,EnsemblGenomes-Tr:CAL94539,GOA:A1K6T4,InterPro:IPR000049,InterPro:IPR012255,InterPro:IPR014729,InterPro:IPR014730,UniProtKB/TrEMBL:A1K6T4,NCBI_GP:CAL94539.1;Name=CAL94539.1;Note=Electron transfer flavoprotein%2C beta subunit. Homology to etfB of B. japonicum of 71%25 (sprot|ETFB_BRAJA). The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). Pfam: Electron transfer flavoprotein beta subunit no signal peptide no TMHS%3B~High confidence in function and specificity;gbkey=CDS;gene=etfB2;product=electron transfer flavoprotein%2C beta-subunit;protein_id=CAL94539.1;transl_table=11
AM406670.1	EMBL	gene	2111082	2112305	.	-	.	ID=gene1964;Name=azo1923;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1923
AM406670.1	EMBL	CDS	2111082	2112305	.	-	0	ID=cds1921;Parent=gene1964;Dbxref=EnsemblGenomes-Gn:azo1923,EnsemblGenomes-Tr:CAL94540,GOA:A1K6T5,InterPro:IPR003673,InterPro:IPR023606,UniProtKB/TrEMBL:A1K6T5,NCBI_GP:CAL94540.1;Name=CAL94540.1;Note=Conserved hypothetical protein. Homology to pa0446 of P. aeruginosa of 72%25 (trembl|Q9I672). Pfam: CAIB/BAIF family. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94540.1;transl_table=11
AM406670.1	EMBL	gene	2112858	2114045	.	-	.	ID=gene1965;Name=gcdH1;gbkey=Gene;gene=gcdH1;gene_biotype=protein_coding;locus_tag=azo1924
AM406670.1	EMBL	CDS	2112858	2114045	.	-	0	ID=cds1922;Parent=gene1965;Dbxref=EnsemblGenomes-Gn:azo1924,EnsemblGenomes-Tr:CAL94541,GOA:A1K6T6,InterPro:IPR006089,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR013786,UniProtKB/TrEMBL:A1K6T6,NCBI_GP:CAL94541.1;Name=CAL94541.1;Note=CATALYZES THE OXIDATIVE DECARBOXYLATION OF GLUTARYL-COA TO CROTONYL-COA AND CO(2) IN THE DEGRADATIVE PATHWAY OF L-LYSINE L-HYDROXYLYSINE AND L-TRYPTOPHAN METABOLISM. IT USES ELECTRON TRANSFER FLAVOPROTEIN AS ITS ELECTRON ACCEPTOR. Entry name TREMBL:Q98HG5 Prim. accession # Q98HG5 Identities %3D 253/397 (63%25) InterPro IPR006089%3B Acyl-CoA_dh. IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR006092%3B Acyl-CoA_dh_N. IPR009075%3B AcylCoADH_C_like. IPR009100%3B AcylCoA_dehyd_NM. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. PF02771%3B Acyl-CoA_dh_N%3B 1. Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.000%3B~Family membership;gbkey=CDS;gene=gcdH1;product=probable glutaryl-CoA dehydrogenase;protein_id=CAL94541.1;transl_table=11
AM406670.1	EMBL	gene	2114231	2115175	.	+	.	ID=gene1966;Name=azo1925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1925
AM406670.1	EMBL	CDS	2114231	2115175	.	+	0	ID=cds1923;Parent=gene1966;Dbxref=EnsemblGenomes-Gn:azo1925,EnsemblGenomes-Tr:CAL94542,GOA:A1K6T7,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K6T7,NCBI_GP:CAL94542.1;Name=CAL94542.1;Note=Transcriptional regulator%2C LysR family%2C%3B~Specificity unclear;gbkey=CDS;product=transcriptional regulator%2C LysR family;protein_id=CAL94542.1;transl_table=11
AM406670.1	EMBL	gene	2115279	2116043	.	+	.	ID=gene1967;Name=azo1926;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1926
AM406670.1	EMBL	CDS	2115279	2116043	.	+	0	ID=cds1924;Parent=gene1967;Dbxref=EnsemblGenomes-Gn:azo1926,EnsemblGenomes-Tr:CAL94543,UniProtKB/TrEMBL:A1K6T8,NCBI_GP:CAL94543.1;Name=CAL94543.1;Note=Hypothetical protein. no homology over the entire protein. no domain structure no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein;protein_id=CAL94543.1;transl_table=11
AM406670.1	EMBL	gene	2116100	2116894	.	-	.	ID=gene1968;Name=azo1927;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1927
AM406670.1	EMBL	CDS	2116100	2116894	.	-	0	ID=cds1925;Parent=gene1968;Dbxref=EnsemblGenomes-Gn:azo1927,EnsemblGenomes-Tr:CAL94544,GOA:A1K6T9,InterPro:IPR001753,InterPro:IPR014748,InterPro:IPR029045,UniProtKB/TrEMBL:A1K6T9,NCBI_GP:CAL94544.1;Name=CAL94544.1;Note=Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA %3D trans-2(or3)-enoyl-CoA + H2O. Entry name TREMBL:Q7VU52 Prim. accession # Q7VU52 Identities %3D 124/266 (46%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;product=probable enoyl-CoA hydratase;protein_id=CAL94544.1;transl_table=11
AM406670.1	EMBL	gene	2116903	2117298	.	-	.	ID=gene1969;Name=abmE;gbkey=Gene;gene=abmE;gene_biotype=protein_coding;locus_tag=azo1928
AM406670.1	EMBL	CDS	2116903	2117298	.	-	0	ID=cds1926;Parent=gene1969;Dbxref=EnsemblGenomes-Gn:azo1928,EnsemblGenomes-Tr:CAL94545,InterPro:IPR006175,InterPro:IPR013813,UniProtKB/TrEMBL:A1K6U0,NCBI_GP:CAL94545.1;Name=CAL94545.1;Note=Conserved hypothetical protein. Homology to orf5 of Azoarcus evansii of 78%25 (tremble:Q93FB4). Pfam: Endoribonuclease L-PSP. Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA. Previously thought to inhibit protein synthesis initiation. This protein may also be involved in the regulation of purine biosynthesis. No signal peptide. No TMHs;gbkey=CDS;gene=abmE;product=conserved hypothetical protein;protein_id=CAL94545.1;transl_table=11
AM406670.1	EMBL	gene	2117291	2117746	.	-	.	ID=gene1970;Name=azo1929;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1929
AM406670.1	EMBL	CDS	2117291	2117746	.	-	0	ID=cds1927;Parent=gene1970;Dbxref=EnsemblGenomes-Gn:azo1929,EnsemblGenomes-Tr:CAL94546,GOA:A1K6U1,InterPro:IPR006683,InterPro:IPR008272,InterPro:IPR029069,UniProtKB/TrEMBL:A1K6U1,NCBI_GP:CAL94546.1;Name=CAL94546.1;Note=TREMBL:Q89PR6: 50%25 identity%3B 71%25 similarity Probable 4-hydroxybenzoyl-CoA thioesterase . InterPro:IPR008272%3B 4HBcoA_thiost_AS Pfam:4HBT:4-hydroxybenzoyl-CoA thioesterase TIGR00051: conserved hypothetical protein No transmembrane helices%3B~Function unclear;gbkey=CDS;product=probable 4-hydroxybenzoyl CoA thioesterase;protein_id=CAL94546.1;transl_table=11
AM406670.1	EMBL	gene	2117761	2118942	.	-	.	ID=gene1971;Name=gcdH2;gbkey=Gene;gene=gcdH2;gene_biotype=protein_coding;locus_tag=azo1930
AM406670.1	EMBL	CDS	2117761	2118942	.	-	0	ID=cds1928;Parent=gene1971;Dbxref=EnsemblGenomes-Gn:azo1930,EnsemblGenomes-Tr:CAL94547,GOA:A1K6U2,InterPro:IPR006089,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR013786,UniProtKB/TrEMBL:A1K6U2,NCBI_GP:CAL94547.1;Name=CAL94547.1;Note=Glutaryl-CoA dehydrogenase mitochondrial precursor CATALYZES THE OXIDATIVE DECARBOXYLATION OF GLUTARYL-COA TO CROTONYL-COA AND CO(2) IN THE DEGRADATIVE PATHWAY OF L-LYSINE L-HYDROXYLYSINE AND L-TRYPTOPHAN METABOLISM. IT USES ELECTRON TRANSFER FLAVOPROTEIN AS ITS ELECTRON ACCEPTOR. Entry name TREMBL:Q88RH2 Prim. accession # Q88RH2 InterPro IPR006089%3B Acyl-CoA_dh. IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR006092%3B Acyl-CoA_dh_N. IPR009075%3B AcylCoADH_C_like. IPR009100%3B AcylCoA_dehyd_NM. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. PF02771%3B Acyl-CoA_dh_N%3B 1. Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=gcdH2;product=probable glutaryl-CoA dehydrogenase;protein_id=CAL94547.1;transl_table=11
AM406670.1	EMBL	gene	2118989	2120140	.	-	.	ID=gene1972;Name=abmD;gbkey=Gene;gene=abmD;gene_biotype=protein_coding;locus_tag=azo1931
AM406670.1	EMBL	CDS	2118989	2120140	.	-	0	ID=cds1929;Parent=gene1972;Dbxref=EnsemblGenomes-Gn:azo1931,EnsemblGenomes-Tr:CAL94548,GOA:A1K6U3,InterPro:IPR006089,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR013786,UniProtKB/TrEMBL:A1K6U3,NCBI_GP:CAL94548.1;Name=CAL94548.1;Note=Catalysis of the reaction:- acyl-CoA + acceptor %3D 2%2C3-dehydroacyl-CoA + reduced acceptor. Entry name TREMBL:Q98BT9 Prim. accession # Q98BT9 InterPro IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR009075%3B AcylCoADH_C_like. IPR009100%3B AcylCoA_dehyd_NM. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=abmD;product=putative acyl-CoA dehydrogenase;protein_id=CAL94548.1;transl_table=11
AM406670.1	EMBL	gene	2120148	2120993	.	-	.	ID=gene1973;Name=abmC;gbkey=Gene;gene=abmC;gene_biotype=protein_coding;locus_tag=azo1932
AM406670.1	EMBL	CDS	2120148	2120993	.	-	0	ID=cds1930;Parent=gene1973;Dbxref=EnsemblGenomes-Gn:azo1932,EnsemblGenomes-Tr:CAL94549,GOA:A1K6U4,InterPro:IPR001753,InterPro:IPR014748,InterPro:IPR018376,InterPro:IPR029045,UniProtKB/TrEMBL:A1K6U4,NCBI_GP:CAL94549.1;Name=CAL94549.1;Note=Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H2O. Entry name TREMBL:Q93FB6 Identities %3D 224/280 (80%25) Prim. accession # Q93FB6 InterPro IPR001753%3B EnCoA_hydrtse. Pfam PF00378%3B ECH%3B 1. Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=abmC;product=probable enoyl-CoA hydratase;protein_id=CAL94549.1;transl_table=11
AM406670.1	EMBL	gene	2121433	2122242	.	-	.	ID=gene1974;Name=abmB;gbkey=Gene;gene=abmB;gene_biotype=protein_coding;locus_tag=azo1933
AM406670.1	EMBL	CDS	2121433	2122242	.	-	0	ID=cds1931;Parent=gene1974;Dbxref=EnsemblGenomes-Gn:azo1933,EnsemblGenomes-Tr:CAL94550,GOA:A1K6U5,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K6U5,NCBI_GP:CAL94550.1;Name=CAL94550.1;Note=Probable beta-hydroxyacyl-CoA dehydrogenase. Homology to abmB of A. evansii of 79%25. InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases. InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase. No signal peptide. No TMHs.%3B~Specificity unclear;gbkey=CDS;gene=abmB;product=probable beta-hydroxyacyl-CoA dehydrogenase;protein_id=CAL94550.1;transl_table=11
AM406670.1	EMBL	gene	2122523	2124838	.	-	.	ID=gene1975;Name=abmA;gbkey=Gene;gene=abmA;gene_biotype=protein_coding;locus_tag=azo1934
AM406670.1	EMBL	CDS	2122523	2124838	.	-	0	ID=cds1932;Parent=gene1975;Dbxref=EnsemblGenomes-Gn:azo1934,EnsemblGenomes-Tr:CAL94551,GOA:A1K6U6,InterPro:IPR001155,InterPro:IPR003042,InterPro:IPR008671,InterPro:IPR013785,UniProtKB/TrEMBL:A1K6U6,NCBI_GP:CAL94551.1;Name=CAL94551.1;Note=2-amninobenzoyl-CoA monooxygenase/reductase (EC 1.14.13.40) Homology to abmA of A. evansii of 86%25 (trembl|Q93FB8(SRS). natural fusion protein of a monooxygenase and a reductase%3B contains flavin. Pfam: Monooxygnease%3B NADH:flavin oxidoreductase/NADH oxidorecutase. no signal peptide. no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=abmA;product=2-amninobenzoyl-CoA monooxygenase;protein_id=CAL94551.1;transl_table=11
AM406670.1	EMBL	gene	2124973	2125479	.	-	.	ID=gene1976;Name=azo1935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1935
AM406670.1	EMBL	CDS	2124973	2125479	.	-	0	ID=cds1933;Parent=gene1976;Dbxref=EnsemblGenomes-Gn:azo1935,EnsemblGenomes-Tr:CAL94552,GOA:A1K6U7,InterPro:IPR000835,InterPro:IPR011991,InterPro:IPR023187,UniProtKB/TrEMBL:A1K6U7,NCBI_GP:CAL94552.1;Name=CAL94552.1;Note=Putative MarR-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative MarR-family transcriptional regulator;protein_id=CAL94552.1;transl_table=11
AM406670.1	EMBL	gene	2125695	2126702	.	+	.	ID=gene1977;Name=azo1936;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1936
AM406670.1	EMBL	CDS	2125695	2126702	.	+	0	ID=cds1934;Parent=gene1977;Dbxref=EnsemblGenomes-Gn:azo1936,EnsemblGenomes-Tr:CAL94553,GOA:A1K6U8,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,UniProtKB/TrEMBL:A1K6U8,NCBI_GP:CAL94553.1;Name=CAL94553.1;Note=Putative AraC-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative AraC-family transcriptional regulator;protein_id=CAL94553.1;transl_table=11
AM406670.1	EMBL	gene	2126825	2127613	.	+	.	ID=gene1978;Name=azo1937;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1937
AM406670.1	EMBL	CDS	2126825	2127613	.	+	0	ID=cds1935;Parent=gene1978;Dbxref=EnsemblGenomes-Gn:azo1937,EnsemblGenomes-Tr:CAL94554,GOA:A1K6U9,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K6U9,NCBI_GP:CAL94554.1;Name=CAL94554.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q9AQN5 (39%25 identity)%3B TREMBL:Q987X7 (35%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL94554.1;transl_table=11
AM406670.1	EMBL	gene	2127668	2128966	.	+	.	ID=gene1979;Name=styA;gbkey=Gene;gene=styA;gene_biotype=protein_coding;locus_tag=azo1938
AM406670.1	EMBL	CDS	2127668	2128966	.	+	0	ID=cds1936;Parent=gene1979;Dbxref=EnsemblGenomes-Gn:azo1938,EnsemblGenomes-Tr:CAL94555,GOA:A1K6V0,InterPro:IPR003042,UniProtKB/TrEMBL:A1K6V0,NCBI_GP:CAL94555.1;Name=CAL94555.1;Note=Putative styrene monooxygenase. Homology to styA of P. fluorescens of 25%25 (TREMBL:O06834) Encode a styrene monooxygenase responsible for the transformation of styrene to epoxystyrene Pfam: FAD binding domain no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=styA;product=putative styrene monooxygenase;protein_id=CAL94555.1;transl_table=11
AM406670.1	EMBL	gene	2129059	2129544	.	+	.	ID=gene1980;Name=nmoB;gbkey=Gene;gene=nmoB;gene_biotype=protein_coding;locus_tag=azo1939
AM406670.1	EMBL	CDS	2129059	2129544	.	+	0	ID=cds1937;Parent=gene1980;Dbxref=EnsemblGenomes-Gn:azo1939,EnsemblGenomes-Tr:CAL94556,GOA:A1K6V1,InterPro:IPR002563,InterPro:IPR012349,UniProtKB/TrEMBL:A1K6V1,NCBI_GP:CAL94556.1;Name=CAL94556.1;Note=Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) (NTA monooxygenase component B) (NTA-MO B). HYDROXYLATION OF NITRILOTRIACETATE. TREMBL:Q93NA5:48%25 identity%2C 62%25 similarity InterPro: IPR002563%3B Flavin_Reduct. IPR009002%3B FMN_binding. Pfam:PF01613%3B Flavin_Reduct Non-secretory protein with low signal peptide probability (0.002) Absence of transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;gene=nmoB;product=probable monooxygenase component B;protein_id=CAL94556.1;transl_table=11
AM406670.1	EMBL	gene	2129896	2130807	.	-	.	ID=gene1981;Name=azo1940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1940
AM406670.1	EMBL	CDS	2129896	2130807	.	-	0	ID=cds1938;Parent=gene1981;Dbxref=EnsemblGenomes-Gn:azo1940,EnsemblGenomes-Tr:CAL94557,InterPro:IPR008526,UniProtKB/TrEMBL:A1K6V2,NCBI_GP:CAL94557.1;Name=CAL94557.1;Note=Conserved hypothetical membrane protein. Homology to PP4294 of P. putida of 67%25 (trembl|Q88F06). Has PF05661%2C Protein of unknown function (DUF808)%3BIPR008526%3BThis family consists of several bacterial proteins of unknown function. no signal peptide. 5 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94557.1;transl_table=11
AM406670.1	EMBL	gene	2130993	2132576	.	-	.	ID=gene1982;Name=gdhAlpha2;gbkey=Gene;gene=gdhAlpha2;gene_biotype=protein_coding;locus_tag=azo1941
AM406670.1	EMBL	CDS	2130993	2132576	.	-	0	ID=cds1939;Parent=gene1982;Dbxref=EnsemblGenomes-Gn:azo1941,EnsemblGenomes-Tr:CAL94558,GOA:A1K6V3,InterPro:IPR000172,InterPro:IPR007867,UniProtKB/TrEMBL:A1K6V3,NCBI_GP:CAL94558.1;Name=CAL94558.1;Note=Putative glucose dehydrogenase alpha subunit. Homology to gdhAlpha of B. cepacia of 28%25 (trembl|Q8GQE7). InterPro: NAD binding site (IPR000205)%3B UBA/THIF-type NAD/FAD binding fold (IPR000594)%2C $Fe-4s ferredoxin%2C ion-sulfur binding domain (IPR001450) Pfam: GMC oxidoreductase no signal peptide no TMHs gid: gid protein%3B~Function unclear;gbkey=CDS;gene=gdhAlpha2;product=putative glucose dehydrogenase alpha subunit;protein_id=CAL94558.1;transl_table=11
AM406670.1	EMBL	gene	2132573	2133175	.	-	.	ID=gene1983;Name=azo1942;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1942
AM406670.1	EMBL	CDS	2132573	2133175	.	-	0	ID=cds1940;Parent=gene1983;Dbxref=EnsemblGenomes-Gn:azo1942,EnsemblGenomes-Tr:CAL94559,InterPro:IPR006311,InterPro:IPR027056,UniProtKB/TrEMBL:A1K6V4,NCBI_GP:CAL94559.1;Name=CAL94559.1;Note=Hypothetical secreted protein. No good homology with hits in the database. No domains predicted. Signal peptide present. No TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94559.1;transl_table=11
AM406670.1	EMBL	gene	2133386	2133904	.	-	.	ID=gene1984;Name=hpaC;gbkey=Gene;gene=hpaC;gene_biotype=protein_coding;locus_tag=azo1943
AM406670.1	EMBL	CDS	2133386	2133904	.	-	0	ID=cds1941;Parent=gene1984;Dbxref=EnsemblGenomes-Gn:azo1943,EnsemblGenomes-Tr:CAL94560,GOA:A1K6V5,InterPro:IPR002563,InterPro:IPR012349,UniProtKB/TrEMBL:A1K6V5,NCBI_GP:CAL94560.1;Name=CAL94560.1;Note=Putative flavin:NADH reductase ycdH (EC 1.6.8.-). Catalyzes the reduction of free flavins (FMN FAD and riboflavin) by NADH (By similarity). TREMBL:Q8RLG2: 41%25 identity%2C 60%25 similarity InterPro: Flavin reductase-like domain InterPro: IPR002563%3B Flavin_Reduct. IPR009002%3B FMN_binding. Pfam PF01613%3B Flavin_Reduct gmhA: phosphoheptose isomerase No signal peptide Absence of transmembrane helices%3B~Function unclear;gbkey=CDS;gene=hpaC;product=probable HPA reductase;protein_id=CAL94560.1;transl_table=11
AM406670.1	EMBL	gene	2133901	2135031	.	-	.	ID=gene1985;Name=azo1944;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1944
AM406670.1	EMBL	CDS	2133901	2135031	.	-	0	ID=cds1942;Parent=gene1985;Dbxref=EnsemblGenomes-Gn:azo1944,EnsemblGenomes-Tr:CAL94561,GOA:A1K6V6,InterPro:IPR011251,UniProtKB/TrEMBL:A1K6V6,NCBI_GP:CAL94561.1;Name=CAL94561.1;Note=Conserved hypothetical protein. Homology to mll3445) of M. loti of 71%25 (trembl|Q98G8). InterPro: Bacterial luciferase (IPR002103). Pfam: Luciferase-like monooxygenase. no signal peptide. no TMHS;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94561.1;transl_table=11
AM406670.1	EMBL	gene	2135167	2136183	.	-	.	ID=gene1986;Name=azo1945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1945
AM406670.1	EMBL	CDS	2135167	2136183	.	-	0	ID=cds1943;Parent=gene1986;Dbxref=EnsemblGenomes-Gn:azo1945,EnsemblGenomes-Tr:CAL94562,GOA:A1K6V7,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,UniProtKB/TrEMBL:A1K6V7,NCBI_GP:CAL94562.1;Name=CAL94562.1;Note=Putative AraC-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative AraC-family transcriptional regulator;protein_id=CAL94562.1;transl_table=11
AM406670.1	EMBL	gene	2136465	2139191	.	+	.	ID=gene1987;Name=padB;gbkey=Gene;gene=padB;gene_biotype=protein_coding;locus_tag=azo1946
AM406670.1	EMBL	CDS	2136465	2139191	.	+	0	ID=cds1944;Parent=gene1987;Dbxref=EnsemblGenomes-Gn:azo1946,EnsemblGenomes-Tr:CAL94563,GOA:A1K6V8,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR009010,UniProtKB/TrEMBL:A1K6V8,NCBI_GP:CAL94563.1;Name=CAL94563.1;Note=Conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase. Homology to padB of Azoarcus sp. EbN1 of 58%25 (gnl|keqq|eba:ebA5393(KEGG)). InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655). Pfam: Molypdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain. no signal peptide. no TMHs%3B~Function unclear;gbkey=CDS;gene=padB;product=conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase;protein_id=CAL94563.1;transl_table=11
AM406670.1	EMBL	gene	2139188	2139835	.	+	.	ID=gene1988;Name=padC;gbkey=Gene;gene=padC;gene_biotype=protein_coding;locus_tag=azo1947
AM406670.1	EMBL	CDS	2139188	2139835	.	+	0	ID=cds1945;Parent=gene1988;Dbxref=EnsemblGenomes-Gn:azo1947,EnsemblGenomes-Tr:CAL94564,GOA:A1K6V9,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K6V9,NCBI_GP:CAL94564.1;Name=CAL94564.1;Note=Conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase. Homology to padC of A. evansiin of 61%25 (trembl|Q8L3B5). Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes (By similarity). Pfam: 4Fe-4S binding domain. Tigrfam: napF: ferredoxin-type protein NapF. no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;gene=padC;product=conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase;protein_id=CAL94564.1;transl_table=11
AM406670.1	EMBL	gene	2139832	2140698	.	+	.	ID=gene1989;Name=padD;gbkey=Gene;gene=padD;gene_biotype=protein_coding;locus_tag=azo1948
AM406670.1	EMBL	CDS	2139832	2140698	.	+	0	ID=cds1946;Parent=gene1989;Dbxref=EnsemblGenomes-Gn:azo1948,EnsemblGenomes-Tr:CAL94565,GOA:A1K6W0,InterPro:IPR007059,UniProtKB/TrEMBL:A1K6W0,NCBI_GP:CAL94565.1;Name=CAL94565.1;Note=Conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase. Homology to padD of A. evansii of 43%25 (trembl|Q8L3B4(SRS) Pfam: DMSO reductase anchor subunit (DmsC) The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC). no signal peptide. 8 TMHs%3B~Family membership;gbkey=CDS;gene=padD;product=conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase;protein_id=CAL94565.1;transl_table=11
AM406670.1	EMBL	gene	2140807	2141832	.	-	.	ID=gene1990;Name=azo1949;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1949
AM406670.1	EMBL	CDS	2140807	2141832	.	-	0	ID=cds1947;Parent=gene1990;Dbxref=EnsemblGenomes-Gn:azo1949,EnsemblGenomes-Tr:CAL94566,GOA:A1K6W1,InterPro:IPR009057,InterPro:IPR018060,UniProtKB/TrEMBL:A1K6W1,NCBI_GP:CAL94566.1;Name=CAL94566.1;Note=Putative AraC-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative AraC-family transcriptional regulator;protein_id=CAL94566.1;transl_table=11
AM406670.1	EMBL	gene	2142429	2143481	.	+	.	ID=gene1991;Name=azo1950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1950
AM406670.1	EMBL	CDS	2142429	2143481	.	+	0	ID=cds1948;Parent=gene1991;Dbxref=EnsemblGenomes-Gn:azo1950,EnsemblGenomes-Tr:CAL94567,InterPro:IPR028203,UniProtKB/TrEMBL:A1K6W2,NCBI_GP:CAL94567.1;Name=CAL94567.1;Note=Conserved hypothetical membrane protein. Homology to Daro03003315 of Dechloromonas aromatica of 48%25 (gi|53729651|ref|ZP_00348492.1|(NBCI ENTREZ)). InterPro: BNR repeat (IPR002860) Pfam: BNR repeat BNR repeats are short repeats never found closer than 40 residues together%2C which suggests that the repeat is structurally longer. These repeats are found in many glycosyl hydrolases as well as other extracellular proteins of unknown function. no singal peptide. 1 TMHs;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94567.1;transl_table=11
AM406670.1	EMBL	gene	2143526	2145898	.	+	.	ID=gene1992;Name=azo1951;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1951
AM406670.1	EMBL	CDS	2143526	2145898	.	+	0	ID=cds1949;Parent=gene1992;Dbxref=EnsemblGenomes-Gn:azo1951,EnsemblGenomes-Tr:CAL94568,GOA:A1K6W3,InterPro:IPR004869,UniProtKB/TrEMBL:A1K6W3,NCBI_GP:CAL94568.1;Name=CAL94568.1;Note=Probable Putative membrane protein MJ1562. TREMBL:Q8G9A8:32%25 identity%2C 52%25 similarity InterPro:IPR000873%3B AMP-bind. IPR002114%3B HPr_SerP_S Pfam:Patched:Patched family 2A067: efflux transporter putative Signal peptide present (Signal P predicted) TMH's 10 (TMHMM predicted)%3B~Family membership;gbkey=CDS;product=putative exporter of RND superfamily;protein_id=CAL94568.1;transl_table=11
AM406670.1	EMBL	gene	2145954	2147552	.	+	.	ID=gene1993;Name=azo1952;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1952
AM406670.1	EMBL	CDS	2145954	2147552	.	+	0	ID=cds1950;Parent=gene1993;Dbxref=EnsemblGenomes-Gn:azo1952,EnsemblGenomes-Tr:CAL94569,UniProtKB/TrEMBL:A1K6W4,NCBI_GP:CAL94569.1;Name=CAL94569.1;Note=Conserved hypothetical secreted protein. Homology to Daro03003313 of Dechloromonas aromatica of 60%25 (gi|53729649|ref|ZP_00149978.2|(NBCI ENTREZ)). Has PF06980%2C Protein of unknown function (DUF1302)%3BIPR010727%2CDUF1302%3BThis family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas. Signal peptide present. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94569.1;transl_table=11
AM406670.1	EMBL	gene	2147569	2148837	.	+	.	ID=gene1994;Name=azo1953;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1953
AM406670.1	EMBL	CDS	2147569	2148837	.	+	0	ID=cds1951;Parent=gene1994;Dbxref=EnsemblGenomes-Gn:azo1953,EnsemblGenomes-Tr:CAL94570,InterPro:IPR010752,UniProtKB/TrEMBL:A1K6W5,NCBI_GP:CAL94570.1;Name=CAL94570.1;Note=Conserved hypothetical secreted protein. Homology to Raeut03000741 of Ralstonia eutropha of 45%25 (gi|46131405|ref|ZP_00169583.2|(NBCI ENTREZ)). Pfam: Protein of unknown function (DUF1329). This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94570.1;transl_table=11
AM406670.1	EMBL	gene	2149426	2150184	.	-	.	ID=gene1995;Name=azo1954;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1954
AM406670.1	EMBL	CDS	2149426	2150184	.	-	0	ID=cds1952;Parent=gene1995;Dbxref=EnsemblGenomes-Gn:azo1954,EnsemblGenomes-Tr:CAL94571,GOA:A1K6W6,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:A1K6W6,NCBI_GP:CAL94571.1;Name=CAL94571.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases. InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL94571.1;transl_table=11
AM406670.1	EMBL	gene	2150473	2151930	.	-	.	ID=gene1996;Name=tms;gbkey=Gene;gene=tms;gene_biotype=protein_coding;locus_tag=azo1955
AM406670.1	EMBL	CDS	2150473	2151930	.	-	0	ID=cds1953;Parent=gene1996;Dbxref=EnsemblGenomes-Gn:azo1955,EnsemblGenomes-Tr:CAL94572,GOA:A1K6W7,InterPro:IPR000120,InterPro:IPR020556,InterPro:IPR023631,UniProtKB/TrEMBL:A1K6W7,NCBI_GP:CAL94572.1;Name=CAL94572.1;Note=Indoleacetamide hydrolase (EC 3.5.1.-) (IAH) (Indole-3-acetamide hydrolase). Hydrolyzes indole-3-acetamide (IAM) into indole-3- acetic acid (IAA).%3B~Family membership;gbkey=CDS;gene=tms;product=indole acetamide hydrolase;protein_id=CAL94572.1;transl_table=11
AM406670.1	EMBL	gene	2151974	2153371	.	-	.	ID=gene1997;Name=amiD;gbkey=Gene;gene=amiD;gene_biotype=protein_coding;locus_tag=azo1956
AM406670.1	EMBL	CDS	2151974	2153371	.	-	0	ID=cds1954;Parent=gene1997;Dbxref=EnsemblGenomes-Gn:azo1956,EnsemblGenomes-Tr:CAL94573,GOA:A1K6W8,InterPro:IPR000120,InterPro:IPR020556,InterPro:IPR023631,UniProtKB/TrEMBL:A1K6W8,NCBI_GP:CAL94573.1;Name=CAL94573.1;Note=Putative amidase amiD%3B~Family membership;gbkey=CDS;gene=amiD;product=amidase;protein_id=CAL94573.1;transl_table=11
AM406670.1	EMBL	gene	2153368	2154240	.	-	.	ID=gene1998;Name=mhpC;gbkey=Gene;gene=mhpC;gene_biotype=protein_coding;locus_tag=azo1957
AM406670.1	EMBL	CDS	2153368	2154240	.	-	0	ID=cds1955;Parent=gene1998;Dbxref=EnsemblGenomes-Gn:azo1957,EnsemblGenomes-Tr:CAL94574,GOA:A1K6W9,InterPro:IPR000073,InterPro:IPR029058,UniProtKB/TrEMBL:A1K6W9,NCBI_GP:CAL94574.1;Name=CAL94574.1;Note=TREMBLNEW:47357: 69%25 identity%2C 80%25 similarity. 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate hydrolase. The alpha/beta hydrolase fold [1] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel)%2C containing 8 strands connected by helices Pfam: Ndr family. TIGR00148: conserved hypothetical protein%3B~High confidence in function and specificity;gbkey=CDS;gene=mhpC;product=2-hydroxy-6-ketonona-2%2C4-dienedioic acid hydrolase;protein_id=CAL94574.1;transl_table=11
AM406670.1	EMBL	gene	2154237	2154995	.	-	.	ID=gene1999;Name=azo1958;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1958
AM406670.1	EMBL	CDS	2154237	2154995	.	-	0	ID=cds1956;Parent=gene1999;Dbxref=EnsemblGenomes-Gn:azo1958,EnsemblGenomes-Tr:CAL94575,GOA:A1K6X0,InterPro:IPR001920,InterPro:IPR015942,UniProtKB/TrEMBL:A1K6X0,NCBI_GP:CAL94575.1;Name=CAL94575.1;Note=Putative Hydantoin racemase%2C28%25 Identity toTrEMBL%3BQ7NTB3%2CQ885G0%2CQ6YNI1. SProt%3BQ00924. Has PF01177%2CAsp/Glu/Hydantoin racemase%3BIPR001920%2C Asp/Glu_race%3B This family contains aspartate racemase%2C glutamate racemase%2Chydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (EC: 5.1.1.13) and glutamate racemase (EC: 5.1.1.3) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity . Glutamate racemase%2C which interconverts L-glutamate into D-glutamate%2C is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterized aspartate and glutamate racemases%2C this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA).Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.;gbkey=CDS;product=putative Hydantoin racemase;protein_id=CAL94575.1;transl_table=11
AM406670.1	EMBL	gene	2155368	2156693	.	-	.	ID=gene2000;Name=azo1959;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1959
AM406670.1	EMBL	CDS	2155368	2156693	.	-	0	ID=cds1957;Parent=gene2000;Dbxref=EnsemblGenomes-Gn:azo1959,EnsemblGenomes-Tr:CAL94576,UniProtKB/TrEMBL:A1K6X1,NCBI_GP:CAL94576.1;Name=CAL94576.1;Note=Hypothetical protein SignalP reporting Non-secretory protein.;gbkey=CDS;product=hypothetical protein;protein_id=CAL94576.1;transl_table=11
AM406670.1	EMBL	gene	2156716	2157738	.	-	.	ID=gene2001;Name=oxoR;gbkey=Gene;gene=oxoR;gene_biotype=protein_coding;locus_tag=azo1960
AM406670.1	EMBL	CDS	2156716	2157738	.	-	0	ID=cds1958;Parent=gene2001;Dbxref=EnsemblGenomes-Gn:azo1960,EnsemblGenomes-Tr:CAL94577,GOA:A1K6X2,InterPro:IPR001041,InterPro:IPR001221,InterPro:IPR001433,InterPro:IPR001709,InterPro:IPR006058,InterPro:IPR008333,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K6X2,NCBI_GP:CAL94577.1;Name=CAL94577.1;Note=Reductase component OxoR%2C of the 2-oxo-1%2C2-dihydroquinoline 8 monooxygenase protein. Enzyme involved in the second step of quinoline degradation by P. putida 86. Involved in bacterial aromatic compounds degradation.%3B~High confidence in function and specificity;gbkey=CDS;gene=oxoR;product=putative 2-Oxo-1%2C2-dihydroquinoline 8-monooxygenase%2C reductase component;protein_id=CAL94577.1;transl_table=11
AM406670.1	EMBL	gene	2157971	2159311	.	-	.	ID=gene2002;Name=oxoO1;gbkey=Gene;gene=oxoO1;gene_biotype=protein_coding;locus_tag=azo1961
AM406670.1	EMBL	CDS	2157971	2159311	.	-	0	ID=cds1959;Parent=gene2002;Dbxref=EnsemblGenomes-Gn:azo1961,EnsemblGenomes-Tr:CAL94578,GOA:A1K6X3,InterPro:IPR017941,InterPro:IPR021028,UniProtKB/TrEMBL:A1K6X3,NCBI_GP:CAL94578.1;Name=CAL94578.1;Note=Oxygenase component OxoO%2C of the 2-oxo-1%2C2-dihydroquinoline 8 monooxygenase protein. Enzyme involved in the second step of quinoline degradation by P. putida 86. Involved in bacterial aromatic compounds degradation.%3B~Function unclear;gbkey=CDS;gene=oxoO1;product=putative 2-oxo-1%2C2-dihydroquinoline 8-monooxygenase%2Coxygenase component;protein_id=CAL94578.1;transl_table=11
AM406670.1	EMBL	gene	2159507	2160076	.	-	.	ID=gene2003;Name=azo1962;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1962
AM406670.1	EMBL	CDS	2159507	2160076	.	-	0	ID=cds1960;Parent=gene2003;Dbxref=EnsemblGenomes-Gn:azo1962,EnsemblGenomes-Tr:CAL94579,GOA:A1K6X4,InterPro:IPR002563,InterPro:IPR012349,UniProtKB/TrEMBL:A1K6X4,NCBI_GP:CAL94579.1;Name=CAL94579.1;Note=Conserved hypothetical flavin reductase. Homology to rsc0763 of R. solanacearum of 43%25 (TREMBL:Q8Y1C7). Pfam: Flavin reductase like domain. This is a flavin reductase family consisting of enzymes known to be flavin reductases as well as various oxidoreductase and monooxygenase components. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical flavin reductase;protein_id=CAL94579.1;transl_table=11
AM406670.1	EMBL	gene	2160073	2161302	.	-	.	ID=gene2004;Name=azo1963;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1963
AM406670.1	EMBL	CDS	2160073	2161302	.	-	0	ID=cds1961;Parent=gene2004;Dbxref=EnsemblGenomes-Gn:azo1963,EnsemblGenomes-Tr:CAL94580,InterPro:IPR016040,UniProtKB/TrEMBL:A1K6X5,NCBI_GP:CAL94580.1;Name=CAL94580.1;Note=Conserved Hypothetical protein has strong similarity 70%25 and 51%25 identity to PUTATIVE OXYGENASE SUBUNIT PROTEIN [Ralstonia solanacearum GMI1000]%2CTrEMBL:Q8XYC1%2C which has IPR003042%3B Rng_mnoxygenase and IPR001327%3B FAD_pyr_redox domain which is absent in this case. No Signal peptide or TMH being reported as present.%3B~Function unclear;gbkey=CDS;product=Conserved Hypothetical protein;protein_id=CAL94580.1;transl_table=11
AM406670.1	EMBL	gene	2161449	2162435	.	-	.	ID=gene2005;Name=azo1964;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1964
AM406670.1	EMBL	CDS	2161449	2162435	.	-	0	ID=cds1962;Parent=gene2005;Dbxref=EnsemblGenomes-Gn:azo1964,EnsemblGenomes-Tr:CAL94581,GOA:A1K6X6,InterPro:IPR009057,InterPro:IPR018060,UniProtKB/TrEMBL:A1K6X6,NCBI_GP:CAL94581.1;Name=CAL94581.1;Note=Putative AraC-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative AraC-family transcriptional regulator;protein_id=CAL94581.1;transl_table=11
AM406670.1	EMBL	gene	2162520	2163521	.	-	.	ID=gene2006;Name=azo1965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1965
AM406670.1	EMBL	CDS	2162520	2163521	.	-	0	ID=cds1963;Parent=gene2006;Dbxref=EnsemblGenomes-Gn:azo1965,EnsemblGenomes-Tr:CAL94582,GOA:A1K6X7,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,UniProtKB/TrEMBL:A1K6X7,NCBI_GP:CAL94582.1;Name=CAL94582.1;Note=Putative AraC-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative AraC-family transcriptional regulator;protein_id=CAL94582.1;transl_table=11
AM406670.1	EMBL	gene	2163648	2164532	.	-	.	ID=gene2007;Name=todE;gbkey=Gene;gene=todE;gene_biotype=protein_coding;locus_tag=azo1966
AM406670.1	EMBL	CDS	2163648	2164532	.	-	0	ID=cds1964;Parent=gene2007;Dbxref=EnsemblGenomes-Gn:azo1966,EnsemblGenomes-Tr:CAL94583,GOA:A1K6X8,InterPro:IPR004360,InterPro:IPR029068,UniProtKB/TrEMBL:A1K6X8,NCBI_GP:CAL94583.1;Name=CAL94583.1;Note=Methylcatechol 2%2C3-dioxygenase%2C TodE%2C is involved in the degradation of toluene. Similar to sprot|TODE_PSEPU (38%25) and to trembl|Q52031 (36%25). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily%3B~Specificity unclear;gbkey=CDS;gene=todE;product=probable 3-methylcatechol 2%2C3-dioxygenase;protein_id=CAL94583.1;transl_table=11
AM406670.1	EMBL	gene	2164557	2165000	.	-	.	ID=gene2008;Name=azo1967;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1967
AM406670.1	EMBL	CDS	2164557	2165000	.	-	0	ID=cds1965;Parent=gene2008;Dbxref=EnsemblGenomes-Gn:azo1967,EnsemblGenomes-Tr:CAL94584,InterPro:IPR024311,UniProtKB/TrEMBL:A1K6X9,NCBI_GP:CAL94584.1;Name=CAL94584.1;Note=Conserved hypothetical protein. Homology to Daro03003325 of Dechloromonas aromatica of 52%25 (gi|53729660|ref|ZP_00348498.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94584.1;transl_table=11
AM406670.1	EMBL	gene	2165047	2165901	.	-	.	ID=gene2009;Name=xylF;gbkey=Gene;gene=xylF;gene_biotype=protein_coding;locus_tag=azo1968
AM406670.1	EMBL	CDS	2165047	2165901	.	-	0	ID=cds1966;Parent=gene2009;Dbxref=EnsemblGenomes-Gn:azo1968,EnsemblGenomes-Tr:CAL94585,GOA:A1K6Y0,InterPro:IPR000073,InterPro:IPR029058,UniProtKB/TrEMBL:A1K6Y0,NCBI_GP:CAL94585.1;Name=CAL94585.1;Note=TREMBL:Q93JW6: 67%25 identity%2C 81%25 similarity. 2-hydroxymuconic semialdehyde hydrolase (HMSH). hydrolysis of C-C bonds in ketonic substances CONVERSION OF 2-HYDROXYMUCONIC ACID SEMIALDEHYDE TO 2-HYDROXYPENT-24-DIENOATE. Pfam: abhydrolase: alpha/Beta hydrolase fold%3B thioesterase domain Absence of transmembrane helices (TMHMM predicted) prfB: peptide chain release factor 2%3B~High confidence in function and specificity;gbkey=CDS;gene=xylF;product=2-hydroxy-muconic semialdehyde hydrolase;protein_id=CAL94585.1;transl_table=11
AM406670.1	EMBL	gene	2166074	2166811	.	+	.	ID=gene2010;Name=bphS;gbkey=Gene;gene=bphS;gene_biotype=protein_coding;locus_tag=azo1969
AM406670.1	EMBL	CDS	2166074	2166811	.	+	0	ID=cds1967;Parent=gene2010;Dbxref=EnsemblGenomes-Gn:azo1969,EnsemblGenomes-Tr:CAL94586,GOA:A1K6Y1,InterPro:IPR000524,InterPro:IPR008920,InterPro:IPR011711,InterPro:IPR011991,UniProtKB/TrEMBL:A1K6Y1,NCBI_GP:CAL94586.1;Name=CAL94586.1;Note=GntR family transcriptional regulator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=bphS;product=GntR family transcriptional regulator;protein_id=CAL94586.1;transl_table=11
AM406670.1	EMBL	gene	2166833	2167366	.	-	.	ID=gene2011;Name=azo1970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1970
AM406670.1	EMBL	CDS	2166833	2167366	.	-	0	ID=cds1968;Parent=gene2011;Dbxref=EnsemblGenomes-Gn:azo1970,EnsemblGenomes-Tr:CAL94587,InterPro:IPR011051,InterPro:IPR013096,InterPro:IPR014710,UniProtKB/TrEMBL:A1K6Y2,NCBI_GP:CAL94587.1;Name=CAL94587.1;Note=Conserved hypothetical protein. Homology to an orf of Rhizobium sp. NGR234 of 50%25 (tremblnew|AAQ87234(SRS)). No domain predicted. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94587.1;transl_table=11
AM406670.1	EMBL	gene	2167420	2168526	.	-	.	ID=gene2012;Name=azo1971;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1971
AM406670.1	EMBL	CDS	2167420	2168526	.	-	0	ID=cds1969;Parent=gene2012;Dbxref=EnsemblGenomes-Gn:azo1971,EnsemblGenomes-Tr:CAL94588,GOA:A1K6Y3,InterPro:IPR002085,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR016040,UniProtKB/TrEMBL:A1K6Y3,NCBI_GP:CAL94588.1;Name=CAL94588.1;Note=SPROT:ADH1_BACST:31%25 identity%3B 45%25 similarity Alcohol dehydrogenase (EC 1.1.1.1) (ADH-T). THERMOSTABLE NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE. an alcohol + nad(+) %3D an aldehyde or ketone + nadh. cofactor:binds 2 zinc ions per subunit (by similarity). InterPro: IPR002328%3B ADH_zinc. IPR002085:Adh_zn_family. Pfam:PF00107%3B ADH_zinc_N tdh: L-threonine 3-dehydrogenase%3B~Specificity unclear;gbkey=CDS;product=putative alcohol dehydrogenase;protein_id=CAL94588.1;transl_table=11
AM406670.1	EMBL	gene	2168585	2169613	.	-	.	ID=gene2013;Name=mhpE;gbkey=Gene;gene=mhpE;gene_biotype=protein_coding;locus_tag=azo1972
AM406670.1	EMBL	CDS	2168585	2169613	.	-	0	ID=cds1970;Parent=gene2013;Dbxref=EnsemblGenomes-Gn:azo1972,EnsemblGenomes-Tr:CAL94589,GOA:A1K6Y4,InterPro:IPR000891,InterPro:IPR012425,InterPro:IPR013785,InterPro:IPR017629,NCBI_GP:CAL94589.1;Name=CAL94589.1;Note=4-hydroxy-2-oxovalerate aldolase%2C MhpE%2C propable involved in the degradation of phenol. Similar to trembl|Q9RHN1 (82%25) and to sprot|MHPE_ECOLI (53%25). InterPro (PF00682): HMG-CoA Lyase-like family Hydroxymethylglutaryl-CoA lyase catalyses the conversion of (S)-3-hydroxy-3-methylglutaryl-CoA to acetyl-CoA and acetoacetate during the final step of ketogenesis and leucine catabolism. The HMGL-like signature is found in a diverse set of enzymes including various aldolases and a region of pyruvate carboxylase%3B~High confidence in function and specificity;gbkey=CDS;gene=mhpE;product=4-hydroxy 2-oxovalerate aldolase;protein_id=CAL94589.1;transl_table=11
AM406670.1	EMBL	gene	2169628	2170548	.	-	.	ID=gene2014;Name=mhpF;gbkey=Gene;gene=mhpF;gene_biotype=protein_coding;locus_tag=azo1973
AM406670.1	EMBL	CDS	2169628	2170548	.	-	0	ID=cds1971;Parent=gene2014;Dbxref=EnsemblGenomes-Gn:azo1973,EnsemblGenomes-Tr:CAL94590,GOA:A1K6Y5,InterPro:IPR000534,InterPro:IPR003361,InterPro:IPR015426,InterPro:IPR016040,NCBI_GP:CAL94590.1;Name=CAL94590.1;Note=This family of bacterial enzymes catalyse the formation of acetyl- CoA from acetaldehyde in the 3-hydroxyphenylpropinoate degradation pathway%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=mhpF;product=acetaldehyde dehydrogenase;protein_id=CAL94590.1;transl_table=11
AM406670.1	EMBL	gene	2170617	2171411	.	-	.	ID=gene2015;Name=mhpD;gbkey=Gene;gene=mhpD;gene_biotype=protein_coding;locus_tag=azo1974
AM406670.1	EMBL	CDS	2170617	2171411	.	-	0	ID=cds1972;Parent=gene2015;Dbxref=EnsemblGenomes-Gn:azo1974,EnsemblGenomes-Tr:CAL94591,GOA:A1K6Y6,InterPro:IPR002529,InterPro:IPR011234,UniProtKB/TrEMBL:A1K6Y6,NCBI_GP:CAL94591.1;Name=CAL94591.1;Note=This family consist of various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds%2C TREMBL:Q51981 (54%25 identity)%3B SWISSPROT:P77608 (50%25 identity). InterPro (IPR002607): Hydratase/decarboxylase Pfam (PF01689): Hydratase/decarboxylase.%3B~High confidence in function and specificity;gbkey=CDS;gene=mhpD;product=MhpD protein;protein_id=CAL94591.1;transl_table=11
AM406670.1	EMBL	gene	2171448	2172401	.	-	.	ID=gene2016;Name=mhpB;gbkey=Gene;gene=mhpB;gene_biotype=protein_coding;locus_tag=azo1975
AM406670.1	EMBL	CDS	2171448	2172401	.	-	0	ID=cds1973;Parent=gene2016;Dbxref=EnsemblGenomes-Gn:azo1975,EnsemblGenomes-Tr:CAL94592,GOA:A1K6Y7,InterPro:IPR004183,InterPro:IPR023789,NCBI_GP:CAL94592.1;Name=CAL94592.1;Note=2%2C3-dihydroxyphenylpropionate 1%2C2-dioxygenase similar in function (51%25 identity) to TrEMBL: P54711%2CPF02900%2C IPR004183 The LigAB enzyme (a protocatechuate 4%2C5-dioxygenase EC: 1.13.11.8)%2C of Sphingomonas paucimobilis oxidizes protocatechuate (or 3%2C4-dihydroxybenzoic acid%2CPCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family%2C which catalyzes the ring-opening reaction of protocatechuate and related compounds . Other members of this family include 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase (EC: 1.13.11.15) and 2%2C3-dihydroxyphenylpropionate 1%2C2-dioxygenase. FUNCTION: Extradiol cleavage of 2%2C3-dihydroxyphenylpropionic acid. COFACTOR: Ferrous ion. PATHWAY: 3-hydroxyphenylpropionate degradation. SUBUNIT: Homotetramer. No Signal Peptide or TMH being reported as present.%3B~High confidence in function and specificity;gbkey=CDS;gene=mhpB;product=2%2C3-dihydroxyphenylpropionate 1%2C2-dioxygenase;protein_id=CAL94592.1;transl_table=11
AM406670.1	EMBL	gene	2172426	2173322	.	-	.	ID=gene2017;Name=ohpC;gbkey=Gene;gene=ohpC;gene_biotype=protein_coding;locus_tag=azo1976
AM406670.1	EMBL	CDS	2172426	2173322	.	-	0	ID=cds1974;Parent=gene2017;Dbxref=EnsemblGenomes-Gn:azo1976,EnsemblGenomes-Tr:CAL94593,GOA:A1K6Y8,InterPro:IPR000073,InterPro:IPR029058,UniProtKB/TrEMBL:A1K6Y8,NCBI_GP:CAL94593.1;Name=CAL94593.1;Note=Hypothetical protein Rv2715/MT2788/Mb2734. TREMBL:Q9KH20: 58%25 identity%2C 73%25 similarity 2-hydroxy-6-ketonona-2%2C4-dienedoic acid hydrolase%3B OhpC [Rhodococcus sp.] Catalysis of the reaction: 2-hydroxy-6-keto-nona-2%2C4-dienedioate + OH- %3D cis-2-hydroxypenta-2%2C4-dienoate + succinate. Pfam: alpha/ beta hydrolase%3B Ndr family%3B B12 binding domain. No signal peptide (Signal P predicted) or transmembrane helices (TMHMM predited) TIGRFAM: Co A. E activ TIGR00044: conserved hypothetical protein%3B~Family membership;gbkey=CDS;gene=ohpC;product=2-hydroxy-6-ketonona-2%2C4-dienedoic acid hydrolase;protein_id=CAL94593.1;transl_table=11
AM406670.1	EMBL	gene	2173724	2175064	.	-	.	ID=gene2018;Name=oxoO2;gbkey=Gene;gene=oxoO2;gene_biotype=protein_coding;locus_tag=azo1977
AM406670.1	EMBL	CDS	2173724	2175064	.	-	0	ID=cds1975;Parent=gene2018;Dbxref=EnsemblGenomes-Gn:azo1977,EnsemblGenomes-Tr:CAL94594,GOA:A1K6X3,InterPro:IPR017941,InterPro:IPR021028,UniProtKB/TrEMBL:A1K6X3,NCBI_GP:CAL94594.1;Name=CAL94594.1;Note=Oxygenase component OxoO%2C of the 2-oxo-1%2C2-dihydroquinoline 8 monooxygenase protein. Enzyme involved in the second step of quinoline degradation by P. putida 86. Involved in bacterial aromatic compounds degradation. InterPro: Rieske iron-sulfur protein 2Fe-2S subunit arcC: carbamate kinase%3B~Function unclear;gbkey=CDS;gene=oxoO2;product=putative 2-oxo-1%2C2-dihydroquinoline 8-monooxygenase%2Coxygenase component;protein_id=CAL94594.1;transl_table=11
AM406670.1	EMBL	gene	2175414	2176190	.	+	.	ID=gene2019;Name=azo1978;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1978
AM406670.1	EMBL	CDS	2175414	2176190	.	+	0	ID=cds1976;Parent=gene2019;Dbxref=EnsemblGenomes-Gn:azo1978,EnsemblGenomes-Tr:CAL94595,GOA:A1K6Z0,InterPro:IPR007325,UniProtKB/TrEMBL:A1K6Z0,NCBI_GP:CAL94595.1;Name=CAL94595.1;Note=TREMBL:Q89PP9: 66%25 identity%2C 79%25 similarity. InterPro:IPR007325%3B Cyclase. Pfam:PF04199%3B Cyclase No signal peptide present. Absence of trans-membrane helices (TMHMM predicted).%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94595.1;transl_table=11
AM406670.1	EMBL	gene	2176634	2176756	.	+	.	ID=gene2020;Name=azo1979;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1979
AM406670.1	EMBL	CDS	2176634	2176756	.	+	0	ID=cds1977;Parent=gene2020;Dbxref=EnsemblGenomes-Gn:azo1979,EnsemblGenomes-Tr:CAL94596,UniProtKB/TrEMBL:A1K6Z1,NCBI_GP:CAL94596.1;Name=CAL94596.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL94596.1;transl_table=11
AM406670.1	EMBL	gene	2176749	2178953	.	+	.	ID=gene2021;Name=azo1980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1980
AM406670.1	EMBL	CDS	2176749	2178953	.	+	0	ID=cds1978;Parent=gene2021;Dbxref=EnsemblGenomes-Gn:azo1980,EnsemblGenomes-Tr:CAL94597,GOA:A1K6Z2,InterPro:IPR011766,InterPro:IPR029061,UniProtKB/TrEMBL:A1K6Z2,NCBI_GP:CAL94597.1;Name=CAL94597.1;Note=Conserved hypothetical indolepyruvate oxidoreductase%2C alpha subunit. Homology to mlr5448 of M. loti of 69%25 (trembl|Q98BS4). CATALYZES THE FERREDOXIN-DEPENDENT OXIDATIVE DECARBOXYLATION OF ARYLPYRUVATES (BY SIMILARITY). no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical indolepyruvate ferredoxin oxidoreductase%2C alpha subunit;protein_id=CAL94597.1;transl_table=11
AM406670.1	EMBL	gene	2178974	2180560	.	+	.	ID=gene2022;Name=azo1981;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1981
AM406670.1	EMBL	CDS	2178974	2180560	.	+	0	ID=cds1979;Parent=gene2022;Dbxref=EnsemblGenomes-Gn:azo1981,EnsemblGenomes-Tr:CAL94598,GOA:A1K6Z3,InterPro:IPR002869,InterPro:IPR019752,UniProtKB/TrEMBL:A1K6Z3,NCBI_GP:CAL94598.1;Name=CAL94598.1;Note=Conserved hypothetical indolepyruvate ferredoxin oxidoreductase%2C beta subunit. Homology to rsc1828 of R. solanacearum of 53%25 (trembl|Q8XYD0). Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical indolepyruvate ferredoxin oxidoreductase. beta subunit;protein_id=CAL94598.1;transl_table=11
AM406670.1	EMBL	gene	2180606	2181583	.	+	.	ID=gene2023;Name=vanB2;gbkey=Gene;gene=vanB2;gene_biotype=protein_coding;locus_tag=azo1982
AM406670.1	EMBL	CDS	2180606	2181583	.	+	0	ID=cds1980;Parent=gene2023;Dbxref=EnsemblGenomes-Gn:azo1982,EnsemblGenomes-Tr:CAL94599,GOA:A1K6Z4,InterPro:IPR000951,InterPro:IPR001041,InterPro:IPR001433,InterPro:IPR006058,InterPro:IPR008333,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K6Z4,NCBI_GP:CAL94599.1;Name=CAL94599.1;Note=Probable vanillate O-demethylase oxidoreductase (Vanillate degradation ferredoxin-like protein). Homology to vanB of P. sp HR199 of 42%25 (sprot|VANB_PSEUH). The vanillate demethylase (EC:1.14.13.82) consists of two proteins: an oxygenase and an oxygenase reductase (VanA and VanB). This enzyme is involved in the vanillate degradation%2C a key intermediate in the degradation of lignin. Pfam: Oxidoredutase FAD-binding domain%3B Oxidoreductase NAD-binding domain%3B 2Fe-2S iron-sulfur cluster binding domain no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=vanB2;product=probable vanillate O-demethylase oxidoreductase;protein_id=CAL94599.1;transl_table=11
AM406670.1	EMBL	gene	2181600	2182922	.	+	.	ID=gene2024;Name=carBb2;gbkey=Gene;gene=carBb2;gene_biotype=protein_coding;locus_tag=azo1983
AM406670.1	EMBL	CDS	2181600	2182922	.	+	0	ID=cds1981;Parent=gene2024;Dbxref=EnsemblGenomes-Gn:azo1983,EnsemblGenomes-Tr:CAL94600,GOA:A1K6Z5,InterPro:IPR001663,InterPro:IPR015879,InterPro:IPR017941,UniProtKB/TrEMBL:A1K6Z5,NCBI_GP:CAL94600.1;Name=CAL94600.1;Note=Hydroxylase large component of 1%2C2-dioxygenase protein complex%2C involved in aromatic compounds degradation. Putative 2'-aminobiphenyl-2%2C3-diol 1%2C2-dioxygenase%2C CarBb. Involved in the aerobic degradation of carbazole by P.resinovorans sp. strain CA10. XlyY: Benzoate 12-dioxygenase beta subunit (EC 1.14.12.10). DEGRADATION OF BENZOATE TO 2-HYDRO-12-DIHYDROXYBENZOATE (DHB).%3B~High confidence in function and specificity;gbkey=CDS;gene=carBb2;product=putative dioxygenase hydroxylase large component;protein_id=CAL94600.1;transl_table=11
AM406670.1	EMBL	gene	2183143	2183625	.	+	.	ID=gene2025;Name=carBa2;gbkey=Gene;gene=carBa2;gene_biotype=protein_coding;locus_tag=azo1984
AM406670.1	EMBL	CDS	2183143	2183625	.	+	0	ID=cds1982;Parent=gene2025;Dbxref=EnsemblGenomes-Gn:azo1984,EnsemblGenomes-Tr:CAL94601,GOA:A1K6Z6,InterPro:IPR000391,UniProtKB/TrEMBL:A1K6Z6,NCBI_GP:CAL94601.1;Name=CAL94601.1;Note=Hydroxylase large component of 1%2C2-dioxygenase protein complex%2C involved in aromatic compounds degradation. Putative 2'-aminobiphenyl-2%2C3-diol 1%2C2-dioxygenase%2C CarBa. Involved in the aerobic degradation of carbazole by P.resinovorans sp. strain CA10. XlyX: Benzoate 12-dioxygenase alpha subunit (EC 1.14.12.10). DEGRADATION OF BENZOATE TO 2-HYDRO-12-DIHYDROXYBENZOATE (DHB). Benzoate 12-dioxygenase beta subunit (EC 1.14.12.10). DEGRADATION OF BENZOATE TO 2-HYDRO-12-DIHYDROXYBENZOATE (DHB). THE BETA SUBUNIT MAY BE RESPONSIBLE FOR THE SUBSTRATE SPECIFICITY OF THE ENZYME. InterPro: Aromatic-ring-hydroxylating dioxygenase beta subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=carBa2;product=putative dioxygenase%2C hydroxylase small component;protein_id=CAL94601.1;transl_table=11
AM406670.1	EMBL	gene	2183639	2185273	.	+	.	ID=gene2026;Name=azo1985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1985
AM406670.1	EMBL	CDS	2183639	2185273	.	+	0	ID=cds1983;Parent=gene2026;Dbxref=EnsemblGenomes-Gn:azo1985,EnsemblGenomes-Tr:CAL94602,GOA:A1K6Z7,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:A1K6Z7,NCBI_GP:CAL94602.1;Name=CAL94602.1;Note=Similar to TREMBL:Q89PS8 (59%25 identity). InterPro (IPR000873): AMP-dependent synthetase and ligase. Pfam (PF00501): AMP-binding enzyme.%3B~Function unclear;gbkey=CDS;product=putative AMP-binding protein;protein_id=CAL94602.1;transl_table=11
AM406670.1	EMBL	gene	2185270	2186448	.	+	.	ID=gene2027;Name=azo1986;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1986
AM406670.1	EMBL	CDS	2185270	2186448	.	+	0	ID=cds1984;Parent=gene2027;Dbxref=EnsemblGenomes-Gn:azo1986,EnsemblGenomes-Tr:CAL94603,GOA:A1K6Z8,InterPro:IPR002155,InterPro:IPR016038,InterPro:IPR016039,UniProtKB/TrEMBL:A1K6Z8,NCBI_GP:CAL94603.1;Name=CAL94603.1;Note=Entry name TREMBL:Q89PQ1 Prim. accession # Q89PQ1 Identities %3D 241/381 (63%25) Thiolase%2C N-terminal domain (Pfam predicted) Prediction: Non-secretory protein Signal peptide probability: 0.00 Number of predicted TMHs: 0;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94603.1;transl_table=11
AM406670.1	EMBL	gene	2186445	2187704	.	+	.	ID=gene2028;Name=azo1987;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1987
AM406670.1	EMBL	CDS	2186445	2187704	.	+	0	ID=cds1985;Parent=gene2028;Dbxref=EnsemblGenomes-Gn:azo1987,EnsemblGenomes-Tr:CAL94604,GOA:A1K6Z9,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR002878,InterPro:IPR012340,InterPro:IPR016040,InterPro:IPR022002,UniProtKB/TrEMBL:A1K6Z9,NCBI_GP:CAL94604.1;Name=CAL94604.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2C%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL94604.1;transl_table=11
AM406670.1	EMBL	gene	2187853	2188638	.	+	.	ID=gene2029;Name=azo1988;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1988
AM406670.1	EMBL	CDS	2187853	2188638	.	+	0	ID=cds1986;Parent=gene2029;Dbxref=EnsemblGenomes-Gn:azo1988,EnsemblGenomes-Tr:CAL94605,GOA:A1K700,InterPro:IPR007325,UniProtKB/TrEMBL:A1K700,NCBI_GP:CAL94605.1;Name=CAL94605.1;Note=TREMBL:Q8XYC3: 64%25 identity%2C 75%25 similarity Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form a part of the active site. InterPro:IPR007325%3B Cyclase. Pfam: PF04199%3B Cyclase Absence of signal peptide. Absence of transmembrane helices%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94605.1;transl_table=11
AM406670.1	EMBL	gene	2188649	2189377	.	+	.	ID=gene2030;Name=azo1989;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1989
AM406670.1	EMBL	CDS	2188649	2189377	.	+	0	ID=cds1987;Parent=gene2030;Dbxref=EnsemblGenomes-Gn:azo1989,EnsemblGenomes-Tr:CAL94606,GOA:A1K701,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K701,NCBI_GP:CAL94606.1;Name=CAL94606.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q7WG84 (46%25 identity)%3B SWISSPROT:P17611 (30%25 identity). Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL94606.1;transl_table=11
AM406670.1	EMBL	gene	2189440	2190591	.	+	.	ID=gene2031;Name=braC;gbkey=Gene;gene=braC;gene_biotype=protein_coding;locus_tag=azo1990
AM406670.1	EMBL	CDS	2189440	2190591	.	+	0	ID=cds1988;Parent=gene2031;Dbxref=EnsemblGenomes-Gn:azo1990,EnsemblGenomes-Tr:CAL94607,GOA:A1K702,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1K702,NCBI_GP:CAL94607.1;Name=CAL94607.1;Note=The transport of branched-chain amino acids in P. aeruginosa is mediated by two distinct systems%2C the leucine%2C isoleucine%2C and valine I and II transports systems. Periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars%2C and ions. BraC is the structural gene for periplasmic binding proteins in P. aeruginosa. Similar to trembl|Q9RYP6 (49%25) and to sprot|BRAC_PSEAE (22%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=braC;product=putative Leu/Ile/Val-binding protein;protein_id=CAL94607.1;transl_table=11
AM406670.1	EMBL	gene	2190910	2191947	.	+	.	ID=gene2032;Name=azo1991;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1991
AM406670.1	EMBL	CDS	2190910	2191947	.	+	0	ID=cds1989;Parent=gene2032;Dbxref=EnsemblGenomes-Gn:azo1991,EnsemblGenomes-Tr:CAL94608,GOA:A1K703,InterPro:IPR001851,UniProtKB/TrEMBL:A1K703,NCBI_GP:CAL94608.1;Name=CAL94608.1;Note=Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q8XRX6 (55%25) and to trembl|Q7WCY3 (53%25). Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) TMHMM reporting nine Tmhelix.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease protein;protein_id=CAL94608.1;transl_table=11
AM406670.1	EMBL	gene	2191944	2193803	.	+	.	ID=gene2033;Name=azo1992;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1992
AM406670.1	EMBL	CDS	2191944	2193803	.	+	0	ID=cds1990;Parent=gene2033;Dbxref=EnsemblGenomes-Gn:azo1992,EnsemblGenomes-Tr:CAL94609,GOA:A1K704,InterPro:IPR001851,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1K704,NCBI_GP:CAL94609.1;Name=CAL94609.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. The integral inner-membrane proteins translocate the substrate across the membrane. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XRX5 (52%25) and to trembl|Q89CG4 (45%25). Pfam (PF00005): ABC transporter Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop) TMHMM reporting nine Tmhelix.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter ATP-binding/permease protein;protein_id=CAL94609.1;transl_table=11
AM406670.1	EMBL	gene	2193803	2194564	.	+	.	ID=gene2034;Name=azo1993;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1993
AM406670.1	EMBL	CDS	2193803	2194564	.	+	0	ID=cds1991;Parent=gene2034;Dbxref=EnsemblGenomes-Gn:azo1993,EnsemblGenomes-Tr:CAL94610,GOA:A1K276,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K276,NCBI_GP:CAL94610.1;Name=CAL94610.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XRX4 (66%25) and to trembl|Q89PQ7 (62%25). Smart: AAA ATPases%3B~Specificity unclear;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL94610.1;transl_table=11
AM406670.1	EMBL	gene	2195039	2196049	.	+	.	ID=gene2035;Name=apbA2;gbkey=Gene;gene=apbA2;gene_biotype=protein_coding;locus_tag=azo1994
AM406670.1	EMBL	CDS	2195039	2196049	.	+	0	ID=cds1992;Parent=gene2035;Dbxref=EnsemblGenomes-Gn:azo1994,EnsemblGenomes-Tr:CAL94611,GOA:A1K706,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR013332,InterPro:IPR013752,InterPro:IPR016040,UniProtKB/TrEMBL:A1K706,NCBI_GP:CAL94611.1;Name=CAL94611.1;Note=Putative 2-dehydropantoate 2-reductase (EC 1.1.1.169) (KPA reductase) (KPR). Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity). apbA_panE: 2-dehydropantoate 2-reductase%3B~Specificity unclear;gbkey=CDS;gene=apbA2;product=2-dehydropantoate 2-reductase;protein_id=CAL94611.1;transl_table=11
AM406670.1	EMBL	gene	2196116	2196889	.	+	.	ID=gene2036;Name=azo1995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1995
AM406670.1	EMBL	CDS	2196116	2196889	.	+	0	ID=cds1993;Parent=gene2036;Dbxref=EnsemblGenomes-Gn:azo1995,EnsemblGenomes-Tr:CAL94612,InterPro:IPR001303,UniProtKB/TrEMBL:A1K707,NCBI_GP:CAL94612.1;Name=CAL94612.1;Note=41%25 Aldolase_II_N. Class II Aldolase and Adducin N-terminal domain Pfam: PF00596%3B Aldolase_II%3B 1. fucA: L-fuculose phosphate aldolase%3B~High confidence in function and specificity;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94612.1;transl_table=11
AM406670.1	EMBL	gene	2197112	2198719	.	+	.	ID=gene2037;Name=acS1;gbkey=Gene;gene=acS1;gene_biotype=protein_coding;locus_tag=azo1996
AM406670.1	EMBL	CDS	2197112	2198719	.	+	0	ID=cds1994;Parent=gene2037;Dbxref=EnsemblGenomes-Gn:azo1996,EnsemblGenomes-Tr:CAL94613,GOA:A1K708,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:A1K708,NCBI_GP:CAL94613.1;Name=CAL94613.1;Note=Acetyl-coenzyme A synthetase enables the cell to use acetate during aerobic growth to generate energy via the tca cycle%2C and biosynthetic compounds via the glyoxylate shunt. acetylates chey%2C the response regulator involved in flagellar movement and chemotaxis. Entry name SWISSPROT:ACSA_ECOLI Prim. accession # P27550 Identities %3D 145/546 (26%25) Pfam PF00501%3B AMP-binding%3B 1. InterPro IPR000873%3B AMP-bind. Pfam PF00501%3B AMP-binding%3B 1. Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=acS1;product=putative acetyl-coenzyme a synthetase;protein_id=CAL94613.1;transl_table=11
AM406670.1	EMBL	gene	2198864	2199388	.	+	.	ID=gene2038;Name=badR;gbkey=Gene;gene=badR;gene_biotype=protein_coding;locus_tag=azo1997
AM406670.1	EMBL	CDS	2198864	2199388	.	+	0	ID=cds1995;Parent=gene2038;Dbxref=EnsemblGenomes-Gn:azo1997,EnsemblGenomes-Tr:CAL94614,GOA:A1K709,InterPro:IPR000835,InterPro:IPR011991,InterPro:IPR023187,UniProtKB/TrEMBL:A1K709,NCBI_GP:CAL94614.1;Name=CAL94614.1;Note=Putative transcriptional activatory protein BadR (Benzoate anaerobic degradation regulator). Similar to SWISSPROT: sprot|BADR_RHOPA (25%25 Rhodopseudomonas palustris%2C transcriptional activatory protein BadR (benzoate anaerobic degradation regulator)) InterPro: IPR000835 HTH_MarR. Pfam: PF01047 MarR family.%3B~Family membership;gbkey=CDS;gene=badR;product=putative MarR-family transcriptional regulator;protein_id=CAL94614.1;transl_table=11
AM406670.1	EMBL	gene	2199402	2200142	.	-	.	ID=gene2039;Name=azo1998;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo1998
AM406670.1	EMBL	CDS	2199402	2200142	.	-	0	ID=cds1996;Parent=gene2039;Dbxref=EnsemblGenomes-Gn:azo1998,EnsemblGenomes-Tr:CAL94615,GOA:A1K710,InterPro:IPR000845,InterPro:IPR001369,InterPro:IPR010044,UniProtKB/TrEMBL:A1K710,NCBI_GP:CAL94615.1;Name=CAL94615.1;Note=Purine-nucleoside phosphorylase (Inosine phosphorylase) (PNPase) InterPro: Purine and other phosphorylases family 2%3B~Family membership;gbkey=CDS;product=Purine-nucleoside phosphorylase;protein_id=CAL94615.1;transl_table=11
AM406670.1	EMBL	gene	2200267	2202084	.	+	.	ID=gene2040;Name=typA;gbkey=Gene;gene=typA;gene_biotype=protein_coding;locus_tag=azo1999
AM406670.1	EMBL	CDS	2200267	2202084	.	+	0	ID=cds1997;Parent=gene2040;Dbxref=EnsemblGenomes-Gn:azo1999,EnsemblGenomes-Tr:CAL94616,GOA:A1K711,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005225,InterPro:IPR006298,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR027417,UniProtKB/TrEMBL:A1K711,NCBI_GP:CAL94616.1;Name=CAL94616.1;Note=GTP-binding elongation factor%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=typA;product=GTP-binding elongation factor;protein_id=CAL94616.1;transl_table=11
AM406670.1	EMBL	gene	2202353	2203258	.	-	.	ID=gene2041;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;locus_tag=azo2000
AM406670.1	EMBL	CDS	2202353	2203258	.	-	0	ID=cds1998;Parent=gene2041;Dbxref=EnsemblGenomes-Gn:azo2000,EnsemblGenomes-Tr:CAL94617,GOA:A1K712,InterPro:IPR005771,InterPro:IPR005835,InterPro:IPR029044,UniProtKB/TrEMBL:A1K712,NCBI_GP:CAL94617.1;Name=CAL94617.1;Note=UTP--glucose-1-phosphate uridylyltransferase 1 (EC 2.7.7.9) (UDP- glucose pyrophosphorylase 1) (UDPGP 1) (Alpha-D-glucosyl-1-phosphate uridylyltransferase 1) (Uridine diphosphoglucose pyrophosphorylase 1). InterPro: ADP-glucose pyrophosphorylase ispD: 4-diphosphocytidyl-2C-methyl-D-er%3B~High confidence in function and specificity;gbkey=CDS;gene=galU;product=UTP-glucose-1-phosphate uridylyltransferase;protein_id=CAL94617.1;transl_table=11
AM406670.1	EMBL	gene	2203255	2205336	.	-	.	ID=gene2042;Name=azo2001;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2001
AM406670.1	EMBL	CDS	2203255	2205336	.	-	0	ID=cds1999;Parent=gene2042;Dbxref=EnsemblGenomes-Gn:azo2001,EnsemblGenomes-Tr:CAL94618,GOA:A1K713,InterPro:IPR001357,InterPro:IPR001679,InterPro:IPR003583,InterPro:IPR004149,InterPro:IPR004150,InterPro:IPR010994,InterPro:IPR012340,InterPro:IPR013839,InterPro:IPR013840,InterPro:IPR018239,NCBI_GP:CAL94618.1;Name=CAL94618.1;Note=DNA ligase (Polydeoxyribonucleotide synthase [NAD+]). This protein catalyzes the formation of phosphodiester linkages between 5-phosphoryl and 3-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. TIGRFAM: dnlj: DNA ligase NAD-dependent.%3B~High confidence in function and specificity;gbkey=CDS;product=DNA ligase (NAD+);protein_id=CAL94618.1;transl_table=11
AM406670.1	EMBL	gene	2205341	2206462	.	-	.	ID=gene2043;Name=azo2002;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2002
AM406670.1	EMBL	CDS	2205341	2206462	.	-	0	ID=cds2000;Parent=gene2043;Dbxref=EnsemblGenomes-Gn:azo2002,EnsemblGenomes-Tr:CAL94619,GOA:A1K714,InterPro:IPR007449,UniProtKB/TrEMBL:A1K714,NCBI_GP:CAL94619.1;Name=CAL94619.1;Note=Conserved hypothetical membrane protein. Homology to ne2283 of N. europaea of 35%25 (trembl|Q82SM8(SRS)). Pfam: ZipA%2C C-ternial FtsZ-binding domaine. This family represents the ZipA C-terminal domain. ZipA is involved in septum formation in bacterial cell division. Its C-terminal domain binds FtsZ%2C a major component of the bacterial septal ring. The structure of this domain is an alpha-beta fold with three alpha helices and a beta sheet of six antiparallel beta strands. The major loops protruding from the beta sheet surface are thought to form a binding site for FtsZ. no singal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94619.1;transl_table=11
AM406670.1	EMBL	gene	2206478	2210014	.	-	.	ID=gene2044;Name=smc;gbkey=Gene;gene=smc;gene_biotype=protein_coding;locus_tag=azo2003
AM406670.1	EMBL	CDS	2206478	2210014	.	-	0	ID=cds2001;Parent=gene2044;Dbxref=EnsemblGenomes-Gn:azo2003,EnsemblGenomes-Tr:CAL94620,GOA:A1K715,InterPro:IPR003395,InterPro:IPR010935,InterPro:IPR011890,InterPro:IPR024704,InterPro:IPR027417,UniProtKB/TrEMBL:A1K715,NCBI_GP:CAL94620.1;Name=CAL94620.1;Note=Chromosome partition protein smc. PLAYS AN IMPORTANT ROLE IN CHROMOSOME STRUCTURE AND PARTITIONING. ESSENTIAL FOR CHROMOSOME PARTITION. InterPro: SMC family C-terminal domain%3B~High confidence in function and specificity;gbkey=CDS;gene=smc;product=chromosome segregation protein;protein_id=CAL94620.1;transl_table=11
AM406670.1	EMBL	gene	2210146	2211420	.	+	.	ID=gene2045;Name=dapC;gbkey=Gene;gene=dapC;gene_biotype=protein_coding;locus_tag=azo2004
AM406670.1	EMBL	CDS	2210146	2211420	.	+	0	ID=cds2002;Parent=gene2045;Dbxref=EnsemblGenomes-Gn:azo2004,EnsemblGenomes-Tr:CAL94621,GOA:A1K716,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR019878,UniProtKB/TrEMBL:A1K716,NCBI_GP:CAL94621.1;Name=CAL94621.1;Note=N-succinyldiaminopimelate aminotransferase%2C DapC converting N-succinyl-2-amino-6-ketopimelate%2C the product of the succinylase DapD%2C to N-succinyl-L%2CL-DAP%2C the substrate of the desuccinylase DapE. Similar to trembl|Q8XZK1 (63%25) and to pir|F83189 (57%25). Pfam: Aminotransferase%2C class I and II%3B~Specificity unclear;gbkey=CDS;gene=dapC;product=probable N-succinyldiaminopimelate aminotransferase;protein_id=CAL94621.1;transl_table=11
AM406670.1	EMBL	gene	2211431	2212252	.	+	.	ID=gene2046;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=azo2005
AM406670.1	EMBL	CDS	2211431	2212252	.	+	0	ID=cds2003;Parent=gene2046;Dbxref=EnsemblGenomes-Gn:azo2005,EnsemblGenomes-Tr:CAL94622,GOA:A1K717,InterPro:IPR001451,InterPro:IPR005664,InterPro:IPR011004,InterPro:IPR018357,InterPro:IPR023180,NCBI_GP:CAL94622.1;Name=CAL94622.1;Note=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase. Homology to dapD of E. coli of 74%25 (sprot|DAPD_ECOLI). Involved in biosynthesis of diaminopimelate and lysine from aspartate semialdehyde. Catalytic activity: succinyl-coa + (r)-2%2C3%2C4%2C5-tetrahydropyridine- 2%2C6-dicarboxylate + h(2)o %3D coa + (r)-2-(succinylamino)-6- oxoheptanedioate. InterPro: Bacterial transferase hexapeptide repeat (IPR001451) no signal peptide no TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=dapD;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=CAL94622.1;transl_table=11
AM406670.1	EMBL	gene	2212337	2213524	.	+	.	ID=gene2047;Name=azo2006;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2006
AM406670.1	EMBL	CDS	2212337	2213524	.	+	0	ID=cds2004;Parent=gene2047;Dbxref=EnsemblGenomes-Gn:azo2006,EnsemblGenomes-Tr:CAL94623,GOA:A1K718,InterPro:IPR001482,InterPro:IPR006321,InterPro:IPR027417,UniProtKB/TrEMBL:A1K718,NCBI_GP:CAL94623.1;Name=CAL94623.1;Note=Tfp pilus retraction protein pilU%2C probable involved in twitching motility mechanism%2C%3B~Specificity unclear;gbkey=CDS;product=probable twitching motility protein;protein_id=CAL94623.1;transl_table=11
AM406670.1	EMBL	gene	2213566	2214708	.	+	.	ID=gene2048;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;locus_tag=azo2007
AM406670.1	EMBL	CDS	2213566	2214708	.	+	0	ID=cds2005;Parent=gene2048;Dbxref=EnsemblGenomes-Gn:azo2007,EnsemblGenomes-Tr:CAL94624,GOA:A1K719,InterPro:IPR002933,InterPro:IPR005941,InterPro:IPR011650,NCBI_GP:CAL94624.1;Name=CAL94624.1;Note=The dapE gene of Escherichia coli encodes N-succinyl-L-diaminopimelic acid desuccinylase%2C an enzyme that catalyzes the synthesis of LL-diaminopimelic acid%2Cone of the last steps in the diaminopimelic acid-lysine pathway. Similar to sprot|DAPE_ECOLI (55%25) and to trembl|Q7NY19 (68%25). Pfam (PF01546): Peptidase family M20/M25/M40%3B~High confidence in function and specificity;gbkey=CDS;gene=dapE;product=succinyl-diaminopimelate desuccinylase;protein_id=CAL94624.1;transl_table=11
AM406670.1	EMBL	gene	2214717	2215679	.	+	.	ID=gene2049;Name=azo2008;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2008
AM406670.1	EMBL	CDS	2214717	2215679	.	+	0	ID=cds2006;Parent=gene2049;Dbxref=EnsemblGenomes-Gn:azo2008,EnsemblGenomes-Tr:CAL94625,GOA:A1K720,InterPro:IPR002052,InterPro:IPR004556,InterPro:IPR017127,InterPro:IPR029063,UniProtKB/TrEMBL:A1K720,NCBI_GP:CAL94625.1;Name=CAL94625.1;Note=Adenine specific methylase%2C HemK family%2C 73%25 Identity to TrEMBL%3BQ5NYT6. Has Pfam%3BPF06325%2C Ribosomal protein L11 methyltransferase (PrmA) This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.%3B~Family membership;gbkey=CDS;product=site-specific DNA-methyltransferase (adenine-specific);protein_id=CAL94625.1;transl_table=11
AM406670.1	EMBL	gene	2215747	2216205	.	+	.	ID=gene2050;Name=rcp1;gbkey=Gene;gene=rcp1;gene_biotype=protein_coding;locus_tag=azo2009
AM406670.1	EMBL	CDS	2215747	2216205	.	+	0	ID=cds2007;Parent=gene2050;Dbxref=EnsemblGenomes-Gn:azo2009,EnsemblGenomes-Tr:CAL94626,GOA:A1K721,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1K721,NCBI_GP:CAL94626.1;Name=CAL94626.1;Note=Putative Response regulator rcp1. Forms a two-component system with cph1 in which it acts as reciever substrate. Similar to SWISSPROT: sprot|RCP1_SYNY3 (30%25 Synechocystis sp.%2C Rcp1) Pfam: PF00072 Response_reg.%3B~Function unclear;gbkey=CDS;gene=rcp1;product=putative two-component response regulator;protein_id=CAL94626.1;transl_table=11
AM406670.1	EMBL	gene	2216245	2216439	.	-	.	ID=gene2051;Name=azo2010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2010
AM406670.1	EMBL	CDS	2216245	2216439	.	-	0	ID=cds2008;Parent=gene2051;Dbxref=EnsemblGenomes-Gn:azo2010,EnsemblGenomes-Tr:CAL94627,GOA:A1K722,InterPro:IPR007479,UniProtKB/TrEMBL:A1K722,NCBI_GP:CAL94627.1;Name=CAL94627.1;Note=Conserved hypothetical protein. Homology to CV1087 of C.violaceum of 69%25 (trembl:Q7NZ35). Has PF04384 %3B Protein of unknown function (DUF528)%3BIPR007479: Small bacterial protein of unknown function. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94627.1;transl_table=11
AM406670.1	EMBL	gene	2216436	2216780	.	-	.	ID=gene2052;Name=fdx2;gbkey=Gene;gene=fdx2;gene_biotype=protein_coding;locus_tag=azo2011
AM406670.1	EMBL	CDS	2216436	2216780	.	-	0	ID=cds2009;Parent=gene2052;Dbxref=EnsemblGenomes-Gn:azo2011,EnsemblGenomes-Tr:CAL94628,GOA:A1K723,InterPro:IPR001041,InterPro:IPR001055,InterPro:IPR011536,InterPro:IPR012675,InterPro:IPR018298,UniProtKB/TrEMBL:A1K723,NCBI_GP:CAL94628.1;Name=CAL94628.1;Note=Ferredoxin 2Fe-2S. Homology to fdx of E. coli of 70%25 (sprot|FER_ECOLI ). Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Although the function of this ferredoxin is unknown it is probable that it has a role as a cellular electron transfer protein. Involved in the in vivo assembly of the Fe-S clusters in a wide variety of iron- sulfur proteins. InterPro: Ferredoxin (IPR001055)%3B Adrenodoxin (IPR001055) Pfam: 2Fe-2S iorn-sulfur cluster binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fdx2;product=Fdx2 protein;protein_id=CAL94628.1;transl_table=11
AM406670.1	EMBL	gene	2216777	2218645	.	-	.	ID=gene2053;Name=azo2012;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2012
AM406670.1	EMBL	CDS	2216777	2218645	.	-	0	ID=cds2010;Parent=gene2053;Dbxref=EnsemblGenomes-Gn:azo2012,EnsemblGenomes-Tr:CAL94629,GOA:A1K724,InterPro:IPR010236,InterPro:IPR013126,InterPro:IPR018181,InterPro:IPR029047,InterPro:IPR029048,NCBI_GP:CAL94629.1;Name=CAL94629.1;Note=Region start changed from 2218553 to 2218646 (93 bases);gbkey=CDS;product=probable chaperone protein;protein_id=CAL94629.1;transl_table=11
AM406670.1	EMBL	gene	2218661	2219194	.	-	.	ID=gene2054;Name=hscB;gbkey=Gene;gene=hscB;gene_biotype=protein_coding;locus_tag=azo2013
AM406670.1	EMBL	CDS	2218661	2219194	.	-	0	ID=cds2011;Parent=gene2054;Dbxref=EnsemblGenomes-Gn:azo2013,EnsemblGenomes-Tr:CAL94630,GOA:A1K725,InterPro:IPR001623,InterPro:IPR004640,InterPro:IPR009073,NCBI_GP:CAL94630.1;Name=CAL94630.1;Note=Putative xo-chaperone protein hscB. Homology to hscB of E. coli of 37%25 (sprot|HSCB_ECOLI) Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward hscA (By similarity). InterPro: Co-chaperone Hsc20 (IPR004640)%3BDNAJ N-terminal domain (IPR001623) Tigrfam: hscB: co-chaperone Hsc20 no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hscB;product=putative co-chaperone HscB;protein_id=CAL94630.1;transl_table=11
AM406670.1	EMBL	gene	2219199	2219522	.	-	.	ID=gene2055;Name=yfhF;gbkey=Gene;gene=yfhF;gene_biotype=protein_coding;locus_tag=azo2014
AM406670.1	EMBL	CDS	2219199	2219522	.	-	0	ID=cds2012;Parent=gene2055;Dbxref=EnsemblGenomes-Gn:azo2014,EnsemblGenomes-Tr:CAL94631,GOA:A1K726,InterPro:IPR000361,InterPro:IPR011302,InterPro:IPR016092,InterPro:IPR017870,UniProtKB/TrEMBL:A1K726,NCBI_GP:CAL94631.1;Name=CAL94631.1;Note=Putative regulatory Protein yfhF%2C 72%25 identity (82%25 similarity) to TrEMBL%3BP36539 of E.coli. Has PF01521%2C HesB-like domain%3B(IPR000361%2C HesB_yadR_yfhF)%3B This family includes HesB which may be involved in nitrogen fixation%3B the hesB gene is expressed only under nitrogen fixation conditions. Other members of this family include various hypothetical proteins of which P46847 and NP31774 also contains NifU-like domains NifU which is also involved in nitrogen fixation. In the gram-negative soil bacterium Rhizobium etli%2C the hesB-like gene iscN is required for nitrogen fixation.%3B~High confidence in function and specificity;gbkey=CDS;gene=yfhF;product=putative regulatory Protein;protein_id=CAL94631.1;transl_table=11
AM406670.1	EMBL	gene	2219543	2219926	.	-	.	ID=gene2056;Name=iscU;gbkey=Gene;gene=iscU;gene_biotype=protein_coding;locus_tag=azo2015
AM406670.1	EMBL	CDS	2219543	2219926	.	-	0	ID=cds2013;Parent=gene2056;Dbxref=EnsemblGenomes-Gn:azo2015,EnsemblGenomes-Tr:CAL94632,GOA:A1K727,InterPro:IPR002871,InterPro:IPR011339,UniProtKB/TrEMBL:A1K727,NCBI_GP:CAL94632.1;Name=CAL94632.1;Note=NifU-related protein. Homology to iscU of A. vinelandii of 79%25 (trembl|O31270). IscU is a homologue of the N-terminal region of NifU%2C an protein MAY BE INVOLVED IN THE FORMATION OR REPAIR OF [FE-S] CLUSTERS PRESENT IN IRON-SULFUR PROTEINS mostly found in nitrogen-fixing bacteria. InterPro: NifU-like N terminal domain (IPR002871) Pfam: NifU-like N-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=iscU;product=NifU-related protein;protein_id=CAL94632.1;transl_table=11
AM406670.1	EMBL	gene	2219958	2221169	.	-	.	ID=gene2057;Name=iscS1;gbkey=Gene;gene=iscS1;gene_biotype=protein_coding;locus_tag=azo2016
AM406670.1	EMBL	CDS	2219958	2221169	.	-	0	ID=cds2014;Parent=gene2057;Dbxref=EnsemblGenomes-Gn:azo2016,EnsemblGenomes-Tr:CAL94633,GOA:A1K728,InterPro:IPR000192,InterPro:IPR010240,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR016454,InterPro:IPR020578,UniProtKB/TrEMBL:A1K728,NCBI_GP:CAL94633.1;Name=CAL94633.1;Note=Cysteine desulfurase (NifS protein homolog). Homology to iscS of E. coli of 72%25 (sprot|ISCS_ECOLI). Catalyzes the removal of elemental sulfur from cysteine to produce alanine (By similarity). Functions as a sulfur delivery protein for nad%2C biotin and fe-s cluster synthesis. Pfam: Aminotransferase class V no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=iscS1;product=cysteine desulfurase;protein_id=CAL94633.1;transl_table=11
AM406670.1	EMBL	gene	2221203	2222351	.	-	.	ID=gene2058;Name=iscS2;gbkey=Gene;gene=iscS2;gene_biotype=protein_coding;locus_tag=azo2017
AM406670.1	EMBL	CDS	2221203	2222351	.	-	0	ID=cds2015;Parent=gene2058;Dbxref=EnsemblGenomes-Gn:azo2017,EnsemblGenomes-Tr:CAL94634,GOA:A1K729,InterPro:IPR000192,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR016454,InterPro:IPR020578,UniProtKB/TrEMBL:A1K729,NCBI_GP:CAL94634.1;Name=CAL94634.1;Note=Probable cysteine desulfurase (NifS protein homolog). Homology to iscS of M. thermophila of 40%25 (sprot|ISCS_METTE) Catalyzes the removal of elemental sulfur from cysteine to produce alanine (By similarity). InterPro: Aminotransferase class-V (IPR000192) Pfam: aminotransferase class-V no signal peptide no TMHs ahpD: alkylhydroperoxidase AhpD%3B~Family membership;gbkey=CDS;gene=iscS2;product=probable cysteine desulfurase;protein_id=CAL94634.1;transl_table=11
AM406670.1	EMBL	gene	2222358	2222840	.	-	.	ID=gene2059;Name=azo2018;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2018
AM406670.1	EMBL	CDS	2222358	2222840	.	-	0	ID=cds2016;Parent=gene2059;Dbxref=EnsemblGenomes-Gn:azo2018,EnsemblGenomes-Tr:CAL94635,GOA:A1K730,InterPro:IPR000944,InterPro:IPR010242,InterPro:IPR011991,UniProtKB/TrEMBL:A1K730,NCBI_GP:CAL94635.1;Name=CAL94635.1;Note=RrF2 family protein. These are small proteins of 12 to 18 kD which seem to contain a signal sequence%2C and may represent a family of probable transcriptional regulators. Similar to SWISSPROT: sprot|YOR2_AZOVI (50%25 Azotobacter vinelandii%2C hypothetical upf0074 protein) / TREMBL: trembl|Q8Y0M5 (72%25 Ralstonia solanacearum (Pseudomonas solanacearum)%2C hypothetical protein rsc1018) Pfam: PF02082 Transcriptional regulator. TIGRFAM: TIGR00738 rrf2 family protein (Uncharacterized protein family UPF0074 / putative transcriptional regulator). Signal P reporting signal peptide. HTH reporting nucleic acid binding motif.%3B~Family membership;gbkey=CDS;product=Rrf2 family protein;protein_id=CAL94635.1;transl_table=11
AM406670.1	EMBL	gene	2222961	2223716	.	-	.	ID=gene2060;Name=cysE;gbkey=Gene;gene=cysE;gene_biotype=protein_coding;locus_tag=azo2019
AM406670.1	EMBL	CDS	2222961	2223716	.	-	0	ID=cds2017;Parent=gene2060;Dbxref=EnsemblGenomes-Gn:azo2019,EnsemblGenomes-Tr:CAL94636,GOA:A1K731,InterPro:IPR001451,InterPro:IPR005881,InterPro:IPR011004,UniProtKB/TrEMBL:A1K731,NCBI_GP:CAL94636.1;Name=CAL94636.1;Note=Probable serine acetyltransferase (EC 2.3.1.30). Homology to cysE of B. subtilis of 48%25 (sprot|CYSE_BACSU). no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=cysE;product=serine O-acetyltransferase;protein_id=CAL94636.1;transl_table=11
AM406670.1	EMBL	gene	2223803	2224531	.	-	.	ID=gene2061;Name=azo2020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2020
AM406670.1	EMBL	CDS	2223803	2224531	.	-	0	ID=cds2018;Parent=gene2061;Dbxref=EnsemblGenomes-Gn:azo2020,EnsemblGenomes-Tr:CAL94637,GOA:A1K732,InterPro:IPR001537,InterPro:IPR004384,InterPro:IPR029026,InterPro:IPR029028,UniProtKB/TrEMBL:A1K732,NCBI_GP:CAL94637.1;Name=CAL94637.1;Note=tRNA/rRNA methyltransferase%3B~Specificity unclear;gbkey=CDS;product=RNA methyltransferase%2C TrmH family%2C group 1;protein_id=CAL94637.1;transl_table=11
AM406670.1	EMBL	gene	2224621	2225433	.	+	.	ID=gene2062;Name=suhB1;gbkey=Gene;gene=suhB1;gene_biotype=protein_coding;locus_tag=azo2021
AM406670.1	EMBL	CDS	2224621	2225433	.	+	0	ID=cds2019;Parent=gene2062;Dbxref=EnsemblGenomes-Gn:azo2021,EnsemblGenomes-Tr:CAL94638,GOA:A1K733,InterPro:IPR000760,InterPro:IPR020550,InterPro:IPR020583,InterPro:IPR022337,UniProtKB/TrEMBL:A1K733,NCBI_GP:CAL94638.1;Name=CAL94638.1;Note=Inositol-1-monophosphatase (EC 3.1.3.25) (IMPase) (Inositol-1- phosphatase) (I-1-Pase).May act by enhancing the synthesis or degradation of phosphorylated messenger molecules. Catalytic activity: myo-inositol 1-phosphate + h(2)o %3D myo- inositol + phosphate. 52%25 Inositol_P. Pfam:PF00459%3B inositol_P%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=suhB1;product=putative inositol-1-monophosphatase;protein_id=CAL94638.1;transl_table=11
AM406670.1	EMBL	gene	2225579	2226112	.	-	.	ID=gene2063;Name=azo2022;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2022
AM406670.1	EMBL	CDS	2225579	2226112	.	-	0	ID=cds2020;Parent=gene2063;Dbxref=EnsemblGenomes-Gn:azo2022,EnsemblGenomes-Tr:CAL94639,InterPro:IPR019587,InterPro:IPR023393,UniProtKB/TrEMBL:A1K734,NCBI_GP:CAL94639.1;Name=CAL94639.1;Note=Conserved hypotheticalsecreted protein. Homology to bll4707 of B.japonicum of 40%25 (tremble:Q89L41). No domains predicted. Signal P reporting signal peptide present. No TMH reported to be present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94639.1;transl_table=11
AM406670.1	EMBL	gene	2227005	2227280	.	+	.	ID=gene2064;Name=azo2023;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2023
AM406670.1	EMBL	CDS	2227005	2227280	.	+	0	ID=cds2021;Parent=gene2064;Dbxref=EnsemblGenomes-Gn:azo2023,EnsemblGenomes-Tr:CAL94640,InterPro:IPR006442,UniProtKB/TrEMBL:A1K735,NCBI_GP:CAL94640.1;Name=CAL94640.1;Note=Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94640.1;transl_table=11
AM406670.1	EMBL	gene	2227270	2227524	.	+	.	ID=gene2065;Name=yoeB;gbkey=Gene;gene=yoeB;gene_biotype=protein_coding;locus_tag=azo2024
AM406670.1	EMBL	CDS	2227270	2227524	.	+	0	ID=cds2022;Parent=gene2065;Dbxref=EnsemblGenomes-Gn:azo2024,EnsemblGenomes-Tr:CAL94641,GOA:A1K736,InterPro:IPR009614,UniProtKB/TrEMBL:A1K736,NCBI_GP:CAL94641.1;Name=CAL94641.1;Note=Conserved Hypothetical protein%2C[yoeB]%2C69%25 identical(85%25 similarity) to SwissPort%3BP56605. TrEMBL%3BQ8FG53 Has PF05015%2C Plasmid maintenance system killer protein (IPR007711%2C Plasmid_killer) %3BSeveral plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid%2C the less stable inhibitor is inactivated more rapidly than the toxin%2C allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin. Has (IPR009614)PF06769%2C Protein of unknown function (DUF1224)%3BThis family consists of several short%2C hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.;gbkey=CDS;gene=yoeB;product=conserved hypothetical protein;protein_id=CAL94641.1;transl_table=11
AM406670.1	EMBL	gene	2227858	2228355	.	-	.	ID=gene2066;Name=azo2025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2025
AM406670.1	EMBL	CDS	2227858	2228355	.	-	0	ID=cds2023;Parent=gene2066;Dbxref=EnsemblGenomes-Gn:azo2025,EnsemblGenomes-Tr:CAL94642,GOA:A1K737,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:A1K737,NCBI_GP:CAL94642.1;Name=CAL94642.1;Note=Conserved hypothetical acetyltransferase. Homology to glr3475 of G. violaceus of 40%25 (trembl|Q7NFP9). Pfam: Acetyltransferase (GNAT) family. no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical acetyltransferase;protein_id=CAL94642.1;transl_table=11
AM406670.1	EMBL	gene	2228352	2228645	.	-	.	ID=gene2067;Name=azo2026;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2026
AM406670.1	EMBL	CDS	2228352	2228645	.	-	0	ID=cds2024;Parent=gene2067;Dbxref=EnsemblGenomes-Gn:azo2026,EnsemblGenomes-Tr:CAL94643,GOA:A1K738,InterPro:IPR010985,InterPro:IPR014795,UniProtKB/TrEMBL:A1K738,NCBI_GP:CAL94643.1;Name=CAL94643.1;Note=Conserved hypothetical protein. Homology to plu0180 of P.luminescens of 37%25 (trembl:Q7N9X1). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94643.1;transl_table=11
AM406670.1	EMBL	gene	2229090	2229269	.	+	.	ID=gene2068;Name=azo2027;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2027
AM406670.1	EMBL	CDS	2229090	2229269	.	+	0	ID=cds2025;Parent=gene2068;Dbxref=EnsemblGenomes-Gn:azo2027,EnsemblGenomes-Tr:CAL94644,GOA:A1K739,InterPro:IPR003346,UniProtKB/TrEMBL:A1K739,NCBI_GP:CAL94644.1;Name=CAL94644.1;Note=Conserved hypothetical truncated transposase. Homology to Reut02001235 of Ralstonia metallidurans of 31%25 (gi|48772472|ref|ZP_00276814.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical truncated transposase;protein_id=CAL94644.1;transl_table=11
AM406670.1	EMBL	gene	2229309	2229731	.	+	.	ID=gene2069;Name=azo2028;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2028
AM406670.1	EMBL	CDS	2229309	2229731	.	+	0	ID=cds2026;Parent=gene2069;Dbxref=EnsemblGenomes-Gn:azo2028,EnsemblGenomes-Tr:CAL94645,UniProtKB/TrEMBL:A1K740,NCBI_GP:CAL94645.1;Name=CAL94645.1;Note=Hypothetical protein predicted by Glimmer/Critica no homology of the entire protein to the data bank no domains predicted no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL94645.1;transl_table=11
AM406670.1	EMBL	gene	2229758	2230090	.	+	.	ID=gene2070;Name=azo2029;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2029
AM406670.1	EMBL	CDS	2229758	2230090	.	+	0	ID=cds2027;Parent=gene2070;Dbxref=EnsemblGenomes-Gn:azo2029,EnsemblGenomes-Tr:CAL94646,InterPro:IPR008878,UniProtKB/TrEMBL:A1K741,NCBI_GP:CAL94646.1;Name=CAL94646.1;Note=Conserved hypothetical transposase. Homology to ebB8 of Azoarcus sp. EbN1 of 91%25 (gnl|keqq|eba:ebB8(KEGG)). Pfam: IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain%2C but they are probably essential for transposition. No signal peptide. Probable 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical transposase;protein_id=CAL94646.1;transl_table=11
AM406670.1	EMBL	gene	2230168	2230368	.	+	.	ID=gene2071;Name=azo2030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2030
AM406670.1	EMBL	CDS	2230168	2230368	.	+	0	ID=cds2028;Parent=gene2071;Dbxref=EnsemblGenomes-Gn:azo2030,EnsemblGenomes-Tr:CAL94647,InterPro:IPR024463,UniProtKB/TrEMBL:A1K742,NCBI_GP:CAL94647.1;Name=CAL94647.1;Note=Hypothetical truncated transposase. Homology to the N-terminus of ebA290 of Azoarcus sp. EbN1 of 92%25 (gnl|keqq|eba:ebA290(KEGG)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=hypothetical truncated transposase;protein_id=CAL94647.1;transl_table=11
AM406670.1	EMBL	gene	2230396	2231724	.	+	.	ID=gene2072;Name=azo2031;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2031
AM406670.1	EMBL	CDS	2230396	2231724	.	+	0	ID=cds2029;Parent=gene2072;Dbxref=EnsemblGenomes-Gn:azo2031,EnsemblGenomes-Tr:CAL94648,InterPro:IPR004291,InterPro:IPR024474,UniProtKB/TrEMBL:A1K743,NCBI_GP:CAL94648.1;Name=CAL94648.1;Note=Hypothetical truncated transposase. Homology to the C-terminus of ebA290 of Azoarcus sp. EbN1 of 67%25 (gnl|keqq|eba:ebA290(KEGG)). Pfam: Transposase IS66 family. No signal peptide. No TMHs;gbkey=CDS;product=hypothetical truncated transposase;protein_id=CAL94648.1;transl_table=11
AM406670.1	EMBL	gene	2231721	2232221	.	+	.	ID=gene2073;Name=azo2032;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2032
AM406670.1	EMBL	CDS	2231721	2232221	.	+	0	ID=cds2030;Parent=gene2073;Dbxref=EnsemblGenomes-Gn:azo2032,EnsemblGenomes-Tr:CAL94649,UniProtKB/TrEMBL:A1K744,NCBI_GP:CAL94649.1;Name=CAL94649.1;Note=Hypothetical protein%2C very weak homology with hits in the database. Has No domains%2C repeats%2C motifs or features detected.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94649.1;transl_table=11
AM406670.1	EMBL	gene	2232140	2232754	.	-	.	ID=gene2074;Name=azo2033;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2033
AM406670.1	EMBL	CDS	2232140	2232754	.	-	0	ID=cds2031;Parent=gene2074;Dbxref=EnsemblGenomes-Gn:azo2033,EnsemblGenomes-Tr:CAL94650,InterPro:IPR024463,UniProtKB/TrEMBL:A1K745,NCBI_GP:CAL94650.1;Name=CAL94650.1;Note=Hypothetical truncated transposase. Homology to the N-terminus of tnp16A of Azoarcus sp. EbN1 of 54%25 (gnl|keqq|eba:ebA690(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=hypothetical truncated transposase;protein_id=CAL94650.1;transl_table=11
AM406670.1	EMBL	gene	2232808	2233167	.	-	.	ID=gene2075;Name=azo2034;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2034
AM406670.1	EMBL	CDS	2232808	2233167	.	-	0	ID=cds2032;Parent=gene2075;Dbxref=EnsemblGenomes-Gn:azo2034,EnsemblGenomes-Tr:CAL94651,InterPro:IPR008878,UniProtKB/TrEMBL:A1K746,NCBI_GP:CAL94651.1;Name=CAL94651.1;Note=Conserved hypothetical transposase helper protein. Homology to ebB98 of Azoarcus sp. EbN1 of 74%25 (gnl|keqq|eba:ebB98(KEGG)). Pfam: IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain%2C but they are probably essential for transposition. No signal peptide. No TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical transposase helper protein;protein_id=CAL94651.1;transl_table=11
AM406670.1	EMBL	gene	2233167	2233475	.	-	.	ID=gene2076;Name=azo2035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2035
AM406670.1	EMBL	CDS	2233167	2233475	.	-	0	ID=cds2033;Parent=gene2076;Dbxref=EnsemblGenomes-Gn:azo2035,EnsemblGenomes-Tr:CAL94652,UniProtKB/TrEMBL:A1K747,NCBI_GP:CAL94652.1;Name=CAL94652.1;Note=Conserved hypothetical protein. Homology to ebD29 of Azoarcus sp. EbN1 of 55%25 (gnl|keqq|eba:ebD29(KEGG)). no domains predicted. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94652.1;transl_table=11
AM406670.1	EMBL	gene	2234650	2235642	.	-	.	ID=gene2077;Name=azo2036;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2036
AM406670.1	EMBL	CDS	2234650	2235642	.	-	0	ID=cds2034;Parent=gene2077;Dbxref=EnsemblGenomes-Gn:azo2036,EnsemblGenomes-Tr:CAL94653,GOA:A1K748,InterPro:IPR002296,InterPro:IPR029063,UniProtKB/TrEMBL:A1K748,NCBI_GP:CAL94653.1;Name=CAL94653.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94653.1;transl_table=11
AM406670.1	EMBL	gene	2236135	2236755	.	-	.	ID=gene2078;Name=azo2037;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2037
AM406670.1	EMBL	CDS	2236135	2236755	.	-	0	ID=cds2035;Parent=gene2078;Dbxref=EnsemblGenomes-Gn:azo2037,EnsemblGenomes-Tr:CAL94654,InterPro:IPR021693,UniProtKB/TrEMBL:A1K749,NCBI_GP:CAL94654.1;Name=CAL94654.1;Note=Conserved hypothetical protein. Homology to XAC2237 of X.axonopodis of 33%25 (trembl:Q8PKD8). No domain predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94654.1;transl_table=11
AM406670.1	EMBL	gene	2237096	2237575	.	-	.	ID=gene2079;Name=azo2038;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2038
AM406670.1	EMBL	CDS	2237096	2237575	.	-	0	ID=cds2036;Parent=gene2079;Dbxref=EnsemblGenomes-Gn:azo2038,EnsemblGenomes-Tr:CAL94655,InterPro:IPR021960,UniProtKB/TrEMBL:A1K750,NCBI_GP:CAL94655.1;Name=CAL94655.1;Note=Conserved hypothetical protein. Homology to RL074 of Pseudomonas aeruginosa of 34%25 (trembl:Q7WXY6). No domains predicted. No TMHs. No singal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94655.1;transl_table=11
AM406670.1	EMBL	gene	2237967	2238542	.	+	.	ID=gene2080;Name=azo2039;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2039
AM406670.1	EMBL	CDS	2237967	2238542	.	+	0	ID=cds2037;Parent=gene2080;Dbxref=EnsemblGenomes-Gn:azo2039,EnsemblGenomes-Tr:CAL94656,UniProtKB/TrEMBL:A1K751,NCBI_GP:CAL94656.1;Name=CAL94656.1;Note=Hypothetical protein predicted by Glimmer/Gritica. No homology to the data bank. No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL94656.1;transl_table=11
AM406670.1	EMBL	gene	2238649	2239074	.	+	.	ID=gene2081;Name=repA;gbkey=Gene;gene=repA;gene_biotype=protein_coding;locus_tag=azo2040
AM406670.1	EMBL	CDS	2238649	2239074	.	+	0	ID=cds2038;Parent=gene2081;Dbxref=EnsemblGenomes-Gn:azo2040,EnsemblGenomes-Tr:CAL94657,GOA:A1K752,InterPro:IPR006881,UniProtKB/TrEMBL:A1K752,NCBI_GP:CAL94657.1;Name=CAL94657.1;Note=Probable replicase protein%2Cfunctional similarity(67%25) to TrEMBL Q6I6A6%2CPF04796%3BIPR006881 Has pfam04796%2C RepA_C domain%2C Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood. No Signal peptide or TMH are reported to be present.%3B~Specificity unclear;gbkey=CDS;gene=repA;product=probable replicase protein(repA);protein_id=CAL94657.1;transl_table=11
AM406670.1	EMBL	gene	2239144	2239623	.	+	.	ID=gene2082;Name=azo2041;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2041
AM406670.1	EMBL	CDS	2239144	2239623	.	+	0	ID=cds2039;Parent=gene2082;Dbxref=EnsemblGenomes-Gn:azo2041,EnsemblGenomes-Tr:CAL94658,GOA:A1K753,InterPro:IPR006881,UniProtKB/TrEMBL:A1K753,NCBI_GP:CAL94658.1;Name=CAL94658.1;Note=Probable replicase protein(repA)%2Cfunctional similarity(67%25) to TrEMBL Q6I6A6%2CPF04796%3BIPR006881 Has pfam04796%2C RepA_C domain%2C Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood. No Signal peptide or TMH are reported to be present.;gbkey=CDS;product=protein kinase;protein_id=CAL94658.1;transl_table=11
AM406670.1	EMBL	gene	2239863	2240681	.	+	.	ID=gene2083;Name=azo2042;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2042
AM406670.1	EMBL	CDS	2239863	2240681	.	+	0	ID=cds2040;Parent=gene2083;Dbxref=EnsemblGenomes-Gn:azo2042,EnsemblGenomes-Tr:CAL94659,UniProtKB/TrEMBL:A1K754,NCBI_GP:CAL94659.1;Name=CAL94659.1;Note=Conserved hypothetical membrane protein. Homology to ebA436 of Azoarcus sp. EbN1 of 49%25 (gnl|keqq|eba:ebA436(KEGG)). No domains predicted. No signal peptide. TMHMM2 reporting presence of 2 TMH's.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94659.1;transl_table=11
AM406670.1	EMBL	gene	2240702	2241337	.	+	.	ID=gene2084;Name=azo2043;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2043
AM406670.1	EMBL	CDS	2240702	2241337	.	+	0	ID=cds2041;Parent=gene2084;Dbxref=EnsemblGenomes-Gn:azo2043,EnsemblGenomes-Tr:CAL94660,UniProtKB/TrEMBL:A1K755,NCBI_GP:CAL94660.1;Name=CAL94660.1;Note=Conserved hypothetical secreted protein. Homology to ebA439 of Azoarcus sp. EbN1 of 59%25 (gnl|keqq|eba:ebA439(KEGG)). No domains predicted. No TMHs signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94660.1;transl_table=11
AM406670.1	EMBL	gene	2241354	2241563	.	+	.	ID=gene2085;Name=azo2044;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2044
AM406670.1	EMBL	CDS	2241354	2241563	.	+	0	ID=cds2042;Parent=gene2085;Dbxref=EnsemblGenomes-Gn:azo2044,EnsemblGenomes-Tr:CAL94661,GOA:A1K756,InterPro:IPR001305,UniProtKB/TrEMBL:A1K756,NCBI_GP:CAL94661.1;Name=CAL94661.1;Note=Conserved hypothetical protein. No homology to a protein of similar size in the data base. No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=hypothetical protein;protein_id=CAL94661.1;transl_table=11
AM406670.1	EMBL	gene	2242277	2244052	.	+	.	ID=gene2086;Name=azo2045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2045
AM406670.1	EMBL	CDS	2242277	2244052	.	+	0	ID=cds2043;Parent=gene2086;Dbxref=EnsemblGenomes-Gn:azo2045,EnsemblGenomes-Tr:CAL94662,InterPro:IPR004919,UniProtKB/TrEMBL:A1K757,NCBI_GP:CAL94662.1;Name=CAL94662.1;Note=Hypothetical protein%2C 28%25 identity (45%25 similarity) to TrEMBL%3BQ7VHD7. Weak homology with hits in the Database spanning the entire lenghth of Protein. Has PF03235%2CProtein of unknown function DUF262%3B Interpro%3BIPR004919.%3B~Function unclear;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94662.1;transl_table=11
AM406670.1	EMBL	gene	2244049	2246235	.	+	.	ID=gene2087;Name=azo2046;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2046
AM406670.1	EMBL	CDS	2244049	2246235	.	+	0	ID=cds2044;Parent=gene2087;Dbxref=EnsemblGenomes-Gn:azo2046,EnsemblGenomes-Tr:CAL94663,InterPro:IPR004919,UniProtKB/TrEMBL:A1K758,NCBI_GP:CAL94663.1;Name=CAL94663.1;Note=Hypothetical protein 27%25 identity to TrEMBL%3BQ7VHD8. Signal Peptide%2C or any known features not present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94663.1;transl_table=11
AM406670.1	EMBL	gene	2246568	2247158	.	+	.	ID=gene2088;Name=radC2;gbkey=Gene;gene=radC2;gene_biotype=protein_coding;locus_tag=azo2047
AM406670.1	EMBL	CDS	2246568	2247158	.	+	0	ID=cds2045;Parent=gene2088;Dbxref=EnsemblGenomes-Gn:azo2047,EnsemblGenomes-Tr:CAL94664,InterPro:IPR001405,InterPro:IPR025657,UniProtKB/TrEMBL:A1K759,NCBI_GP:CAL94664.1;Name=CAL94664.1;Note=DNA repair protein radC homolog.%3B~High confidence in function and specificity;gbkey=CDS;gene=radC2;product=DNA repair protein;protein_id=CAL94664.1;transl_table=11
AM406670.1	EMBL	gene	2247594	2248190	.	+	.	ID=gene2089;Name=azo2048;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2048
AM406670.1	EMBL	CDS	2247594	2248190	.	+	0	ID=cds2046;Parent=gene2089;Dbxref=EnsemblGenomes-Gn:azo2048,EnsemblGenomes-Tr:CAL94665,InterPro:IPR006674,UniProtKB/TrEMBL:A1K760,NCBI_GP:CAL94665.1;Name=CAL94665.1;Note=Hypothetical protein yfdR. The HD domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism%2C signal transduction and possibly other functions in bacteria%2Carchaea and eukaryotes TREMBL:Q8HAA3: 41%25 identity%2C52%25 similarity InterPro:IPR003607%3B Met_phsphohydro. SMART:SM00471%3B HDc hstdl_phs_rel: histidinol phosphatase-r No signal peptide No transmembrane helices%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94665.1;transl_table=11
AM406670.1	EMBL	gene	2248683	2248952	.	+	.	ID=gene2090;Name=azo2049;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2049
AM406670.1	EMBL	CDS	2248683	2248952	.	+	0	ID=cds2047;Parent=gene2090;Dbxref=EnsemblGenomes-Gn:azo2049,EnsemblGenomes-Tr:CAL94666,InterPro:IPR010260,UniProtKB/TrEMBL:A1K761,NCBI_GP:CAL94666.1;Name=CAL94666.1;Note=Conserved hypothetical protein. Homology to BTH_I1915 of Burkholderia thailandensis of 45%25. Pfam: Prophage CP4-57 regulatory protein (AlpA).%2C This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant%2Coverproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94666.1;transl_table=11
AM406670.1	EMBL	gene	2249016	2250140	.	-	.	ID=gene2091;Name=azo2050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2050
AM406670.1	EMBL	CDS	2249016	2250140	.	-	0	ID=cds2048;Parent=gene2091;Dbxref=EnsemblGenomes-Gn:azo2050,EnsemblGenomes-Tr:CAL94667,GOA:A1K762,InterPro:IPR002559,UniProtKB/TrEMBL:A1K762,NCBI_GP:CAL94667.1;Name=CAL94667.1;Note=Putative H repeat-associated protein PF01609 Transposase_11%2C Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily%2C which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4%2C IS421%2C IS5377%2C IS427%2C IS402%2C IS1355%2C IS5%2C which was original isolated in bacteriophage lambda. SignalP reporting signal Peptide to be present No TMH reproted as present.%3B~High confidence in function and specificity;gbkey=CDS;product=putative H repeat-associated protein;protein_id=CAL94667.1;transl_table=11
AM406670.1	EMBL	gene	2250271	2251566	.	-	.	ID=gene2092;Name=azo2051;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2051
AM406670.1	EMBL	CDS	2250271	2251566	.	-	0	ID=cds2049;Parent=gene2092;Dbxref=EnsemblGenomes-Gn:azo2051,EnsemblGenomes-Tr:CAL94668,GOA:A1K763,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,InterPro:IPR023109,InterPro:IPR025166,UniProtKB/TrEMBL:A1K763,NCBI_GP:CAL94668.1;Name=CAL94668.1;Note=Integrase. INTEGRASE IS NECESSARY FOR INTEGRATION OF THE PHAGE INTO THE HOST GENOME BY SITE-SPECIFIC RECOMBINATION. IN CONJUNCTION WITH EXCISIONASE INTEGRASE IS ALSO NECESSARY FOR EXCISION OF THE PROPHAGE FROM THE HOST GENOME. InterPro: Phage integrase%3B~High confidence in function and specificity;gbkey=CDS;product=site-specific recombinase%2C phage integrase family;protein_id=CAL94668.1;transl_table=11
AM406670.1	EMBL	gene	2251818	2254355	.	+	.	ID=gene2093;Name=azo2052;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2052
AM406670.1	EMBL	CDS	2251818	2254355	.	+	0	ID=cds2050;Parent=gene2093;Dbxref=EnsemblGenomes-Gn:azo2052,EnsemblGenomes-Tr:CAL94669,GOA:A1K764,InterPro:IPR000432,InterPro:IPR005748,InterPro:IPR007695,InterPro:IPR007696,InterPro:IPR007860,InterPro:IPR007861,InterPro:IPR016151,InterPro:IPR027417,NCBI_GP:CAL94669.1;Name=CAL94669.1;Note=Region start changed from 2251738 to 2251819 (-81 bases);gbkey=CDS;product=DNA mismatch repair protein;protein_id=CAL94669.1;transl_table=11
AM406670.1	EMBL	gene	2254352	2255107	.	+	.	ID=gene2094;Name=speE1;gbkey=Gene;gene=speE1;gene_biotype=protein_coding;locus_tag=azo2053
AM406670.1	EMBL	CDS	2254352	2255107	.	+	0	ID=cds2051;Parent=gene2094;Dbxref=EnsemblGenomes-Gn:azo2053,EnsemblGenomes-Tr:CAL94670,GOA:A1K765,InterPro:IPR001045,InterPro:IPR029063,UniProtKB/TrEMBL:A1K765,NCBI_GP:CAL94670.1;Name=CAL94670.1;Note=Spermidine synthase (Putrescine aminopropyltransferase)%2C%3B~Conserved hypothetical protein;gbkey=CDS;gene=speE1;product=putative spermidine synthase;protein_id=CAL94670.1;transl_table=11
AM406670.1	EMBL	gene	2255112	2255831	.	-	.	ID=gene2095;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;locus_tag=azo2054
AM406670.1	EMBL	CDS	2255112	2255831	.	-	0	ID=cds2052;Parent=gene2095;Dbxref=EnsemblGenomes-Gn:azo2054,EnsemblGenomes-Tr:CAL94671,GOA:A1K766,InterPro:IPR006054,InterPro:IPR006055,InterPro:IPR006309,InterPro:IPR012337,InterPro:IPR013520,UniProtKB/TrEMBL:A1K766,NCBI_GP:CAL94671.1;Name=CAL94671.1;Note=DNA polymerase III epsilon chain. DNA POLYMERASE III IS A COMPLEX MULTICHAIN ENZYME RESPONSIBLE FOR MOST OF THE REPLICATIVE SYNTHESIS IN BACTERIA. THE EPSILON SUBUNIT CONTAIN THE EDITING FUNCTION AND IS A PROOFREADING 3-5 EXONUCLEASE (BY SIMILARITY). InterPro: Exonuclease. TIGRFAM: dnaq: DNA polymerase III epsilon chain.%3B~High confidence in function and specificity;gbkey=CDS;gene=dnaQ;product=DNA-directed DNA polymerase;protein_id=CAL94671.1;transl_table=11
AM406670.1	EMBL	gene	2255849	2256307	.	-	.	ID=gene2096;Name=rnhA2;gbkey=Gene;gene=rnhA2;gene_biotype=protein_coding;locus_tag=azo2055
AM406670.1	EMBL	CDS	2255849	2256307	.	-	0	ID=cds2053;Parent=gene2096;Dbxref=EnsemblGenomes-Gn:azo2055,EnsemblGenomes-Tr:CAL94672,GOA:A1K767,InterPro:IPR002156,InterPro:IPR012337,InterPro:IPR022892,UniProtKB/TrEMBL:A1K767,NCBI_GP:CAL94672.1;Name=CAL94672.1;Note=Ribonuclease H (RNase H). This enzyme is an endonuclease that degrades the RNA of RNA-DNA hybrids specifically (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=rnhA2;product=Ribonuclease H.;protein_id=CAL94672.1;transl_table=11
AM406670.1	EMBL	gene	2256308	2257072	.	-	.	ID=gene2097;Name=azo2056;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2056
AM406670.1	EMBL	CDS	2256308	2257072	.	-	0	ID=cds2054;Parent=gene2097;Dbxref=EnsemblGenomes-Gn:azo2056,EnsemblGenomes-Tr:CAL94673,GOA:A1K768,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:A1K768,NCBI_GP:CAL94673.1;Name=CAL94673.1;Note=Similar to TREMBL:Q82XV9 (41%25 identity%2C generic methyl-transferase)%3B TREMBL:Q7NYL9 (45%25 identity).;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94673.1;transl_table=11
AM406670.1	EMBL	gene	2257071	2257832	.	+	.	ID=gene2098;Name=gloB2;gbkey=Gene;gene=gloB2;gene_biotype=protein_coding;locus_tag=azo2057
AM406670.1	EMBL	CDS	2257071	2257832	.	+	0	ID=cds2055;Parent=gene2098;Dbxref=EnsemblGenomes-Gn:azo2057,EnsemblGenomes-Tr:CAL94674,GOA:A1K769,InterPro:IPR001279,InterPro:IPR017782,UniProtKB/TrEMBL:A1K769,NCBI_GP:CAL94674.1;Name=CAL94674.1;Note=Probable hydroxyacylglutathione hydrolase (EC 3.1.2.6) (Glyoxalase II) (Glx II). Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid.Similarity to bacterial stress protein TerD. 49%25 identity and 64%25 similarity to similar product from Nitrosomonas europaea ATCC InterPro: Metallo-beta-lactamase superfamily CoA_E_activ: CoA-substrate-specific enz%3B~Family membership;gbkey=CDS;gene=gloB2;product=probable hydroxyacylglutathione hydrolase;protein_id=CAL94674.1;transl_table=11
AM406670.1	EMBL	gene	2257836	2258222	.	-	.	ID=gene2099;Name=ccdB;gbkey=Gene;gene=ccdB;gene_biotype=protein_coding;locus_tag=azo2058
AM406670.1	EMBL	CDS	2257836	2258222	.	-	0	ID=cds2056;Parent=gene2099;Dbxref=EnsemblGenomes-Gn:azo2058,EnsemblGenomes-Tr:CAL94675,GOA:A1K770,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1K770,NCBI_GP:CAL94675.1;Name=CAL94675.1;Note=Probable response regulator%2C%3B~Specificity unclear;gbkey=CDS;gene=ccdB;product=probable response regulator;protein_id=CAL94675.1;transl_table=11
AM406670.1	EMBL	gene	2258225	2259202	.	-	.	ID=gene2100;Name=wspR1;gbkey=Gene;gene=wspR1;gene_biotype=protein_coding;locus_tag=azo2059
AM406670.1	EMBL	CDS	2258225	2259202	.	-	0	ID=cds2057;Parent=gene2100;Dbxref=EnsemblGenomes-Gn:azo2059,EnsemblGenomes-Tr:CAL94676,GOA:A1K771,InterPro:IPR000160,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR029787,UniProtKB/TrEMBL:A1K771,NCBI_GP:CAL94676.1;Name=CAL94676.1;Note=Probable REC/GGDEF-domain containing protein%2C%3B~Function unclear;gbkey=CDS;gene=wspR1;product=probable REC/GGDEF-domain containing protein;protein_id=CAL94676.1;transl_table=11
AM406670.1	EMBL	gene	2259430	2260878	.	+	.	ID=gene2101;Name=azo2060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2060
AM406670.1	EMBL	CDS	2259430	2260878	.	+	0	ID=cds2058;Parent=gene2101;Dbxref=EnsemblGenomes-Gn:azo2060,EnsemblGenomes-Tr:CAL94677,GOA:A1K772,InterPro:IPR000189,InterPro:IPR008258,InterPro:IPR018392,InterPro:IPR023346,UniProtKB/TrEMBL:A1K772,NCBI_GP:CAL94677.1;Name=CAL94677.1;Note=Region start changed from 2259236 to 2259431 (-195 bases);gbkey=CDS;product=membrane-bound lytic murein transglycosylase D;protein_id=CAL94677.1;transl_table=11
AM406670.1	EMBL	gene	2260891	2262891	.	-	.	ID=gene2102;Name=dppF;gbkey=Gene;gene=dppF;gene_biotype=protein_coding;locus_tag=azo2061
AM406670.1	EMBL	CDS	2260891	2262891	.	-	0	ID=cds2059;Parent=gene2102;Dbxref=EnsemblGenomes-Gn:azo2061,EnsemblGenomes-Tr:CAL94678,GOA:A1K773,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR010066,InterPro:IPR013563,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K773,NCBI_GP:CAL94678.1;Name=CAL94678.1;Note=Hypothetical ABC transporter ATP-binding protein yliA. PROBABLY PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM YLIABCD. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. TREMBL:Q82S74: 52%25 identity%2C 64%25 similarity. InterPro: IPR003593%3B AAA_ATPase. No signal peptide No transmembrane helices. IPR003439%3B ABC_transporter. IPR010066%3B Oligo_HPY. Pfam:PF00005%3B ABC_tran%3B 2. ProDom: PD000006%3B ABC_transporter%3B 1. SMART:SM00382%3B AAA%3B 2. TIGRFAMs TIGR01727%3B oligo_HPY mobB: molybdopterin-guanine dinucleotid%3B~High confidence in function and specificity;gbkey=CDS;gene=dppF;product=probable ABC transporter%2C ATP-binding protein;protein_id=CAL94678.1;transl_table=11
AM406670.1	EMBL	gene	2262996	2263481	.	-	.	ID=gene2103;Name=azo2062;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2062
AM406670.1	EMBL	CDS	2262996	2263481	.	-	0	ID=cds2060;Parent=gene2103;Dbxref=EnsemblGenomes-Gn:azo2062,EnsemblGenomes-Tr:CAL94679,GOA:A1K774,InterPro:IPR001179,InterPro:IPR023566,UniProtKB/TrEMBL:A1K774,NCBI_GP:CAL94679.1;Name=CAL94679.1;Note=Conserved hypothetical peptidyl-prolyl cis-trans isomerase. Homology to slyD of E. coli of 41%25 (sprot|SLYD_ECOLI) but around 30 aa at the C-terminus are missing. Peptidylprolyl isomerases accelerate protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. InterPro: FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase) (IPR001179). Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase. no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical peptidyl-prolyl cis-trans isomerase;protein_id=CAL94679.1;transl_table=11
AM406670.1	EMBL	gene	2263441	2263950	.	-	.	ID=gene2104;Name=bcp1;gbkey=Gene;gene=bcp1;gene_biotype=protein_coding;locus_tag=azo2063
AM406670.1	EMBL	CDS	2263441	2263950	.	-	0	ID=cds2061;Parent=gene2104;Dbxref=EnsemblGenomes-Gn:azo2063,EnsemblGenomes-Tr:CAL94680,GOA:A1K775,InterPro:IPR000866,InterPro:IPR012336,UniProtKB/TrEMBL:A1K775,NCBI_GP:CAL94680.1;Name=CAL94680.1;Note=Putative bacterioferritin comigratory protein. Homology to bcp of E. coli of 37%25 (srot:BCP_ECOLI) Interpro: Alkyl hydroperoxid reductase/ Thiol specific antioxidant / Mal Alergern (IPR000866) Pfam: AhpcC/TSA family no signal peptide no TMH%3B~Family membership;gbkey=CDS;gene=bcp1;product=putative bacterioferritin comigratory protein;protein_id=CAL94680.1;transl_table=11
AM406670.1	EMBL	gene	2264217	2264825	.	+	.	ID=gene2105;Name=lexA;gbkey=Gene;gene=lexA;gene_biotype=protein_coding;locus_tag=azo2064
AM406670.1	EMBL	CDS	2264217	2264825	.	+	0	ID=cds2062;Parent=gene2105;Dbxref=EnsemblGenomes-Gn:azo2064,EnsemblGenomes-Tr:CAL94681,GOA:A1K776,InterPro:IPR006197,InterPro:IPR006199,InterPro:IPR006200,InterPro:IPR011991,InterPro:IPR015927,InterPro:IPR019759,InterPro:IPR028360,NCBI_GP:CAL94681.1;Name=CAL94681.1;Note=Regulator for SOS regulon%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=lexA;product=repressor LexA;protein_id=CAL94681.1;transl_table=11
AM406670.1	EMBL	gene	2264839	2265489	.	+	.	ID=gene2106;Name=azo2065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2065
AM406670.1	EMBL	CDS	2264839	2265489	.	+	0	ID=cds2063;Parent=gene2106;Dbxref=EnsemblGenomes-Gn:azo2065,EnsemblGenomes-Tr:CAL94682,UniProtKB/TrEMBL:A1K777,NCBI_GP:CAL94682.1;Name=CAL94682.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. No signal peptide. 4 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94682.1;transl_table=11
AM406670.1	EMBL	gene	2265492	2266883	.	+	.	ID=gene2107;Name=norM;gbkey=Gene;gene=norM;gene_biotype=protein_coding;locus_tag=azo2066
AM406670.1	EMBL	CDS	2265492	2266883	.	+	0	ID=cds2064;Parent=gene2107;Dbxref=EnsemblGenomes-Gn:azo2066,EnsemblGenomes-Tr:CAL94683,GOA:A1K778,InterPro:IPR002528,UniProtKB/TrEMBL:A1K778,NCBI_GP:CAL94683.1;Name=CAL94683.1;Note=The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus%2C a putative ethionine resistance protein of Saccharomyces cerevisiae%2Cand the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. Functions as a Na(+)/drug antiporter. These proteins have 12 probable TMS%2CTREMBL:Q7NXN3 (35%25 identity)%3B SWISSPROT:Q9K015 (32%25 identity). Pfam (UPF0013): Uncharacterized membrane protein family. TIGRFAM (TIGR00797): matE. TMHMM reporting 11 transmembrane helices. TC (2.A.66.1.): The Multi Antimicrobial Extrusion (MATE) Family.%3B~High confidence in function and specificity;gbkey=CDS;gene=norM;product=multidrug resistance protein;protein_id=CAL94683.1;transl_table=11
AM406670.1	EMBL	gene	2266889	2267239	.	-	.	ID=gene2108;Name=azo2067;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2067
AM406670.1	EMBL	CDS	2266889	2267239	.	-	0	ID=cds2065;Parent=gene2108;Dbxref=EnsemblGenomes-Gn:azo2067,EnsemblGenomes-Tr:CAL94684,GOA:A1K779,InterPro:IPR006659,InterPro:IPR006660,InterPro:IPR012336,UniProtKB/TrEMBL:A1K779,NCBI_GP:CAL94684.1;Name=CAL94684.1;Note=Arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier). REDUCTION OF ARSENATE [AS(V)] TO ARSENITE [AS(III)]. THIS PROTEIN EXPANDS THE SUBSTRATE SPECIFICITY OF ARSAB PUMP WHICH CAN EXTRUDE ARSENITE AND ANTIMONITE TO ALLOW FOR ARSENATE PUMPING AND RESISTANCE. arsC: arsenate reductase%3B~High confidence in function and specificity;gbkey=CDS;product=arsenate reductase;protein_id=CAL94684.1;transl_table=11
AM406670.1	EMBL	gene	2267239	2269050	.	-	.	ID=gene2109;Name=azo2068;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2068
AM406670.1	EMBL	CDS	2267239	2269050	.	-	0	ID=cds2066;Parent=gene2109;Dbxref=EnsemblGenomes-Gn:azo2068,EnsemblGenomes-Tr:CAL94685,InterPro:IPR001478,InterPro:IPR007963,InterPro:IPR024191,UniProtKB/TrEMBL:A1K780,NCBI_GP:CAL94685.1;Name=CAL94685.1;Note=Conserved hypothetical protein. Homology to rsc2890 of R. solanacearum of 53%25 (trembl|Q8XVE1). InterPro: PDZ domain (also known as DHR or GLGF)(IPR001478). Pfam: PDZ domain (also known as DHR or GLGF)%3B M61 glycyl aminopeptidase PDZ domains are found in diverse signaling proteins in bacteria%2C yeasts%2C plants%2C insects and vertebrates. They may function in targeting signalling molecules to sub-membranous sites. Some PDZs have been shown to bind C-terminal polypeptides%3B others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Glycyl aminopeptidase is an unusual peptidase in that it has a preference for substrates with an N-terminal glycine or alanine. no signal peptide. no TMHs.%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94685.1;transl_table=11
AM406670.1	EMBL	gene	2269150	2269224	.	-	.	ID=gene2110;Name=tRNA-Val;gbkey=Gene;gene=tRNA-Val;gene_biotype=tRNA;locus_tag=azo_tRNA_0038
AM406670.1	EMBL	tRNA	2269150	2269224	.	-	.	ID=rna43;Parent=gene2110;anticodon=(pos:complement(2269190..2269192));gbkey=tRNA;gene=tRNA-Val;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Val
AM406670.1	EMBL	exon	2269150	2269224	.	-	.	ID=id44;Parent=rna43;anticodon=(pos:complement(2269190..2269192));gbkey=tRNA;gene=tRNA-Val;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Val
AM406670.1	EMBL	gene	2269263	2269337	.	-	.	ID=gene2111;Name=tRNA-Val;gbkey=Gene;gene=tRNA-Val;gene_biotype=tRNA;locus_tag=azo_tRNA_0039
AM406670.1	EMBL	tRNA	2269263	2269337	.	-	.	ID=rna44;Parent=gene2111;anticodon=(pos:complement(2269303..2269305));gbkey=tRNA;gene=tRNA-Val;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Val
AM406670.1	EMBL	exon	2269263	2269337	.	-	.	ID=id45;Parent=rna44;anticodon=(pos:complement(2269303..2269305));gbkey=tRNA;gene=tRNA-Val;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Val
AM406670.1	EMBL	gene	2269418	2269493	.	-	.	ID=gene2112;Name=tRNA-Val;gbkey=Gene;gene=tRNA-Val;gene_biotype=tRNA;locus_tag=azo_tRNA_0040
AM406670.1	EMBL	tRNA	2269418	2269493	.	-	.	ID=rna45;Parent=gene2112;anticodon=(pos:complement(2269458..2269460));gbkey=tRNA;gene=tRNA-Val;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Val
AM406670.1	EMBL	exon	2269418	2269493	.	-	.	ID=id46;Parent=rna45;anticodon=(pos:complement(2269458..2269460));gbkey=tRNA;gene=tRNA-Val;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Val
AM406670.1	EMBL	gene	2269613	2271997	.	-	.	ID=gene2113;Name=azo2069;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2069
AM406670.1	EMBL	CDS	2269613	2271997	.	-	0	ID=cds2067;Parent=gene2113;Dbxref=EnsemblGenomes-Gn:azo2069,EnsemblGenomes-Tr:CAL94686,GOA:A1K781,InterPro:IPR003111,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004815,InterPro:IPR008268,InterPro:IPR008269,InterPro:IPR014721,InterPro:IPR015947,InterPro:IPR020568,InterPro:IPR027065,InterPro:IPR027417,InterPro:IPR027543,UniProtKB/TrEMBL:A1K781,NCBI_GP:CAL94686.1;Name=CAL94686.1;Note=Region start changed from 2272064 to 2271998 (-66 bases);gbkey=CDS;product=ATP-dependent protease La;protein_id=CAL94686.1;transl_table=11
AM406670.1	EMBL	gene	2272107	2273375	.	-	.	ID=gene2114;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=azo2070
AM406670.1	EMBL	CDS	2272107	2273375	.	-	0	ID=cds2068;Parent=gene2114;Dbxref=EnsemblGenomes-Gn:azo2070,EnsemblGenomes-Tr:CAL94687,GOA:A1K782,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004487,InterPro:IPR010603,InterPro:IPR019489,InterPro:IPR027417,NCBI_GP:CAL94687.1;Name=CAL94687.1;Note=ATP-dependent Clp protease ATP-binding subunit clpX. ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of clpP (By similarity). InterPro: ATP-dependent Clp protease ATP-binding subunit ClpX%3B~High confidence in function and specificity;gbkey=CDS;gene=clpX;product=ATP-dependent Clp protease ATP-binding subunit;protein_id=CAL94687.1;transl_table=11
AM406670.1	EMBL	gene	2273393	2274031	.	-	.	ID=gene2115;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=azo2071
AM406670.1	EMBL	CDS	2273393	2274031	.	-	0	ID=cds2069;Parent=gene2115;Dbxref=EnsemblGenomes-Gn:azo2071,EnsemblGenomes-Tr:CAL94688,GOA:A1K783,InterPro:IPR001907,InterPro:IPR018215,InterPro:IPR023562,InterPro:IPR029045,NCBI_GP:CAL94688.1;Name=CAL94688.1;Note=clpP%2C lopP: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) . Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity). InterPro: Clp protease The endopeptidase Clp (EC 3.4.21.92) from Escherichia coli cleaves peptides in various proteins in a process that requires ATP hydrolysis. Clp is a dimeric protein which consists of a proteolytic subunit (gene clpP) and either of two related ATP-binding regulatory subunits (genes clpA and clpX). ClpP is a serine protease which has a chymotrypsin-like activity. Its catalytic activity seems to be provided by a charge relay system%3B~Conserved hypothetical protein;gbkey=CDS;gene=clpP;product=Endopeptidase Clp;protein_id=CAL94688.1;transl_table=11
AM406670.1	EMBL	gene	2274050	2275363	.	-	.	ID=gene2116;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=azo2072
AM406670.1	EMBL	CDS	2274050	2275363	.	-	0	ID=cds2070;Parent=gene2116;Dbxref=EnsemblGenomes-Gn:azo2072,EnsemblGenomes-Tr:CAL94689,GOA:A1K784,InterPro:IPR001179,InterPro:IPR005215,InterPro:IPR008880,InterPro:IPR008881,InterPro:IPR027304,NCBI_GP:CAL94689.1;Name=CAL94689.1;Note=Trigger factor (TF). Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation (By similarity). Pfam: In the E. coli cytosol%2C a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF)%2C and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains%2C an N-terminal domain which mediates association with the large ribosomal subunit%2C a central substrate binding and PPIase domain with homology to FKBP proteins%2Cand a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel%2C together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains. This family represents the N-terminal region of the protein. efp: translation elongation factor P%3B~Family membership;gbkey=CDS;gene=tig;product=trigger factor;protein_id=CAL94689.1;transl_table=11
AM406670.1	EMBL	gene	2275699	2277621	.	+	.	ID=gene2117;Name=prkA;gbkey=Gene;gene=prkA;gene_biotype=protein_coding;locus_tag=azo2073
AM406670.1	EMBL	CDS	2275699	2277621	.	+	0	ID=cds2071;Parent=gene2117;Dbxref=EnsemblGenomes-Gn:azo2073,EnsemblGenomes-Tr:CAL94690,GOA:A1K785,InterPro:IPR010650,InterPro:IPR013153,InterPro:IPR016230,InterPro:IPR027417,UniProtKB/TrEMBL:A1K785,NCBI_GP:CAL94690.1;Name=CAL94690.1;Note=Putative serine protein kinase. Homology to prkA of Bacillus subtilis of 32%25 (gnl|keqq|bsu:BG10804 ). Pfam: PrkA serine kinase. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases. Note that many family members are hypothetical. Interpro: IPR010650 PrkA serine kinase. No signal peptide. No TMHs.%2C%3B~Family membership;gbkey=CDS;gene=prkA;product=PrkA protein;protein_id=CAL94690.1;transl_table=11
AM406670.1	EMBL	gene	2277682	2278950	.	+	.	ID=gene2118;Name=yeaH;gbkey=Gene;gene=yeaH;gene_biotype=protein_coding;locus_tag=azo2074
AM406670.1	EMBL	CDS	2277682	2278950	.	+	0	ID=cds2072;Parent=gene2118;Dbxref=EnsemblGenomes-Gn:azo2074,EnsemblGenomes-Tr:CAL94691,InterPro:IPR006698,UniProtKB/TrEMBL:A1K786,NCBI_GP:CAL94691.1;Name=CAL94691.1;Note=Conserved hypothetical protein%2C[yeaH]54%25 identical (71%25 similarity )to SwissProt%3BP59349. Has PF04285(IPR006698)%2C Protein of unknown function (DUF444)%3BBacterial protein of unknown function. One family member (Q97LI1) is predicted to contain a von Willebrand factor (vWF) type A domain (Smart:VWA). No Signal peptide or TMH present.;gbkey=CDS;gene=yeaH;product=conserved hypothetical protein;protein_id=CAL94691.1;transl_table=11
AM406670.1	EMBL	gene	2278947	2280482	.	+	.	ID=gene2119;Name=ycgB;gbkey=Gene;gene=ycgB;gene_biotype=protein_coding;locus_tag=azo2075
AM406670.1	EMBL	CDS	2278947	2280482	.	+	0	ID=cds2073;Parent=gene2119;Dbxref=EnsemblGenomes-Gn:azo2075,EnsemblGenomes-Tr:CAL94692,InterPro:IPR007390,UniProtKB/TrEMBL:A1K787,NCBI_GP:CAL94692.1;Name=CAL94692.1;Note=Putative cytoplasmic protein[ycgB]%2C67%25 identical (79%25 similarity) SwissProt%3BP29013. TrEMBL%3BQ8XDL3(67%25 identical)TrEMBL%3BQ8ZP16. Has PF04293%2C SpoVR like protein%3BIPR007390%3B Family member P37875 is Bacillus subtilis stage V sporulation protein R%2Cwhich is involved in spore cortex formation. Little is known about cortex biosynthesis%2C except that it depends on several sigma E controlled genes%2C including spoVR. No Signal peptide or TMH present.%3B~Family membership;gbkey=CDS;gene=ycgB;product=putative cytoplasmic protein;protein_id=CAL94692.1;transl_table=11
AM406670.1	EMBL	gene	2280524	2282053	.	+	.	ID=gene2120;Name=azo2076;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2076
AM406670.1	EMBL	CDS	2280524	2282053	.	+	0	ID=cds2074;Parent=gene2120;Dbxref=EnsemblGenomes-Gn:azo2076,EnsemblGenomes-Tr:CAL94693,InterPro:IPR000631,InterPro:IPR004443,InterPro:IPR017953,InterPro:IPR029056,UniProtKB/TrEMBL:A1K788,NCBI_GP:CAL94693.1;Name=CAL94693.1;Note=38%25 UPF0031.IPR004443%3B YjeF_Nterm. Pfam:PF01256%3B Carb_kinase%3B 1.PF03853%3B YjeF_N%3B 1. TIGRFAMs:TIGR00196%3B yjeF_cterm%3B 1.TIGR00197%3B yjeF_nterm%3B 1.%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94693.1;transl_table=11
AM406670.1	EMBL	gene	2282131	2283384	.	+	.	ID=gene2121;Name=azo2077;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2077
AM406670.1	EMBL	CDS	2282131	2283384	.	+	0	ID=cds2075;Parent=gene2121;Dbxref=EnsemblGenomes-Gn:azo2077,EnsemblGenomes-Tr:CAL94694,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR021812,UniProtKB/TrEMBL:A1K789,NCBI_GP:CAL94694.1;Name=CAL94694.1;Note=HD-domain containing protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=HD-domain containing protein;protein_id=CAL94694.1;transl_table=11
AM406670.1	EMBL	gene	2283461	2284315	.	+	.	ID=gene2122;Name=azo2078;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2078
AM406670.1	EMBL	CDS	2283461	2284315	.	+	0	ID=cds2076;Parent=gene2122;Dbxref=EnsemblGenomes-Gn:azo2078,EnsemblGenomes-Tr:CAL94695,GOA:A1K790,InterPro:IPR000620,UniProtKB/TrEMBL:A1K790,NCBI_GP:CAL94695.1;Name=CAL94695.1;Note=Conserved hypothetical membrane protein. Homology to PA0239 pf P. aeruginosa of 41%25. InterPro: Integral membrane protein DUF6. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transport. Pfam: Integral membrane protein DUF6. 10 TMHs. no signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94695.1;transl_table=11
AM406670.1	EMBL	gene	2284399	2285247	.	+	.	ID=gene2123;Name=nadC;gbkey=Gene;gene=nadC;gene_biotype=protein_coding;locus_tag=azo2079
AM406670.1	EMBL	CDS	2284399	2285247	.	+	0	ID=cds2077;Parent=gene2123;Dbxref=EnsemblGenomes-Gn:azo2079,EnsemblGenomes-Tr:CAL94696,GOA:A1K791,InterPro:IPR002638,InterPro:IPR004393,InterPro:IPR013785,InterPro:IPR022412,InterPro:IPR027277,UniProtKB/TrEMBL:A1K791,NCBI_GP:CAL94696.1;Name=CAL94696.1;Note=Nicotinate-nucleotide pyrophosphorylase [carboxylating] (Quinolinate phosphoribosyltransferase [decarboxylating]) (QAPRTase). TIGRFAM: nadC: nicotinate-nucleotide pyrophosphorylase%3B~High confidence in function and specificity;gbkey=CDS;gene=nadC;product=Nicotinate-nucleotide diphosphorylase (carboxylating);protein_id=CAL94696.1;transl_table=11
AM406670.1	EMBL	gene	2285402	2286865	.	-	.	ID=gene2124;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;locus_tag=azo2080
AM406670.1	EMBL	CDS	2285402	2286865	.	-	0	ID=cds2078;Parent=gene2124;Dbxref=EnsemblGenomes-Gn:azo2080,EnsemblGenomes-Tr:CAL94697,GOA:A1K792,InterPro:IPR000634,InterPro:IPR001926,InterPro:IPR004450,InterPro:IPR029144,UniProtKB/TrEMBL:A1K792,NCBI_GP:CAL94697.1;Name=CAL94697.1;Note=Threonine synthase is involved in threonine biosynthesis. It catalyses the conversion of O-phospho-L-homoserine and water into L-threonine and orthophosphate%2Cusing pyridoxal phosphate as a cofactor. The pyridoxal-phosphate binding site is a Lys (K) residue. The enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. Similar to trembl|Q8XZR7 (68%25)%2C to sprot|THRC_METGL (69%25) and to sprot|THRC_PSEAE (42%25). TIGRFAM: thrC%2C threonine synthase Pfam (PF00291): Pyridoxal-phosphate dependent enzyme%3B~High confidence in function and specificity;gbkey=CDS;gene=thrC;product=ThrC protein;protein_id=CAL94697.1;transl_table=11
AM406670.1	EMBL	gene	2287025	2288332	.	-	.	ID=gene2125;Name=hom;gbkey=Gene;gene=hom;gene_biotype=protein_coding;locus_tag=azo2081
AM406670.1	EMBL	CDS	2287025	2288332	.	-	0	ID=cds2079;Parent=gene2125;Dbxref=EnsemblGenomes-Gn:azo2081,EnsemblGenomes-Tr:CAL94698,GOA:A1K793,InterPro:IPR001342,InterPro:IPR002912,InterPro:IPR005106,InterPro:IPR016040,InterPro:IPR016204,InterPro:IPR019811,UniProtKB/TrEMBL:A1K793,NCBI_GP:CAL94698.1;Name=CAL94698.1;Note=Homoserine dehydrogenase catalyzes NAD-dependent reduction of aspartate beta-semialdehyde into homoserine. This reaction is the third step in a pathway leading from aspartate to homoserine. Similar to TREMBL:Q9RAM9 (77%25) and to pir|DEPSHA(PIR (Georgetown University) (56%25). Pfam: Homoserine dehydrogenase%3B~High confidence in function and specificity;gbkey=CDS;gene=hom;product=Hom protein;protein_id=CAL94698.1;transl_table=11
AM406670.1	EMBL	gene	2288377	2289705	.	-	.	ID=gene2126;Name=yfbQ;gbkey=Gene;gene=yfbQ;gene_biotype=protein_coding;locus_tag=azo2082
AM406670.1	EMBL	CDS	2288377	2289705	.	-	0	ID=cds2080;Parent=gene2126;Dbxref=EnsemblGenomes-Gn:azo2082,EnsemblGenomes-Tr:CAL94699,GOA:A1K794,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K794,NCBI_GP:CAL94699.1;Name=CAL94699.1;Note=Aspartate aminotransferase is important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants%2C it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. The enzyme catalyses the reaction: L-aspartate + 2-oxoglutarate %3D oxaloacetate + L-glutamate Similar to trembl|Q8XZR9 (72%25)%2Cto trembl|Q9RAN0 (62%25) and to sprot|YFBQ_ECOLI (57%25). Pfam (PF00155): Aminotransferases class-I%3B~Specificity unclear;gbkey=CDS;gene=yfbQ;product=probable aspartate aminotransferase;protein_id=CAL94699.1;transl_table=11
AM406670.1	EMBL	gene	2289870	2290250	.	+	.	ID=gene2127;Name=azo2083;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2083
AM406670.1	EMBL	CDS	2289870	2290250	.	+	0	ID=cds2081;Parent=gene2127;Dbxref=EnsemblGenomes-Gn:azo2083,EnsemblGenomes-Tr:CAL94700,InterPro:IPR007523,UniProtKB/TrEMBL:A1K795,NCBI_GP:CAL94700.1;Name=CAL94700.1;Note=Conserved hypothetical protein. Homology to RS02847 of R.solanacearum of 49%25 (trembl:Q8XZS0). Has PF04635%2CProtein of unknown function%2C DUF598%3BIPR006729%3B This family contains several uncharacterised proteins. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94700.1;transl_table=11
AM406670.1	EMBL	gene	2290256	2291482	.	-	.	ID=gene2128;Name=azo2084;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2084
AM406670.1	EMBL	CDS	2290256	2291482	.	-	0	ID=cds2082;Parent=gene2128;Dbxref=EnsemblGenomes-Gn:azo2084,EnsemblGenomes-Tr:CAL94701,GOA:A1K796,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K796,NCBI_GP:CAL94701.1;Name=CAL94701.1;Note=Member of the Major Facilitator Superfamily (MFS). MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Hypothetical transport protein yjjL. InterPro: General substrate transporters 2A0104: phosphoglycerate transporter%3B~Function unclear;gbkey=CDS;product=putative membrane transport protein;protein_id=CAL94701.1;transl_table=11
AM406670.1	EMBL	gene	2291561	2293009	.	-	.	ID=gene2129;Name=xanB;gbkey=Gene;gene=xanB;gene_biotype=protein_coding;locus_tag=azo2085
AM406670.1	EMBL	CDS	2291561	2293009	.	-	0	ID=cds2083;Parent=gene2129;Dbxref=EnsemblGenomes-Gn:azo2085,EnsemblGenomes-Tr:CAL94702,GOA:A1K797,InterPro:IPR001538,InterPro:IPR005835,InterPro:IPR006375,InterPro:IPR011051,InterPro:IPR014710,InterPro:IPR029044,UniProtKB/TrEMBL:A1K797,NCBI_GP:CAL94702.1;Name=CAL94702.1;Note=Probable xanthan biosynthesis protein XanB. Homology to xanB of X. campestris of 60%25 (sprot|XANB_XANCP(SRS)) Xanthan biosynthesis protein XanB is a multifunctional enzyme including Mannose-6-phosphate isomerase (EC 5.3.1.8) (Phosphomannose isomerase) (PMI) (Phosphohexomutase)and Mannose-1-phosphate guanylyl transferase (GDP) (EC 2.7.7.22) (GDP-mannose pyrophosphorylase) (GMP). InterPro: ADP-glucose pyrophosphorylase (IPR005835)%3B Mannose-6-phosphate isomerase type II (IPR001538) Pfam: Nucleotidyl transferase%2C Mannose-6-phosphate isomerase no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=xanB;product=probable xanthan biosynthesis protein XanB;protein_id=CAL94702.1;transl_table=11
AM406670.1	EMBL	gene	2293152	2293907	.	-	.	ID=gene2130;Name=azo2086;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2086
AM406670.1	EMBL	CDS	2293152	2293907	.	-	0	ID=cds2084;Parent=gene2130;Dbxref=EnsemblGenomes-Gn:azo2086,EnsemblGenomes-Tr:CAL94703,GOA:A1K798,InterPro:IPR000792,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K798,NCBI_GP:CAL94703.1;Name=CAL94703.1;Note=Putative transcriptional activator protein%2C%3B~Function unclear;gbkey=CDS;product=putative transcriptional activator protein;protein_id=CAL94703.1;transl_table=11
AM406670.1	EMBL	gene	2293904	2294440	.	-	.	ID=gene2131;Name=xcmX;gbkey=Gene;gene=xcmX;gene_biotype=protein_coding;locus_tag=azo2087
AM406670.1	EMBL	CDS	2293904	2294440	.	-	0	ID=cds2085;Parent=gene2131;Dbxref=EnsemblGenomes-Gn:azo2087,EnsemblGenomes-Tr:CAL94704,UniProtKB/TrEMBL:A1K799,NCBI_GP:CAL94704.1;Name=CAL94704.1;Note=In Pseudomonas putida strain GB-1%2C XcmX is involved in a novel Xcp-related system for the transport of manganese-oxidizing enzymes to the cell surface. Similar trembl|Q8KSG3 (33%25). TMHMM reporting one TMH. SignalP reporting a signal peptid.%3B~Function unclear;gbkey=CDS;gene=xcmX;product=putative Gsp-related pathway protein;protein_id=CAL94704.1;transl_table=11
AM406670.1	EMBL	gene	2294427	2294819	.	-	.	ID=gene2132;Name=azo2088;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2088
AM406670.1	EMBL	CDS	2294427	2294819	.	-	0	ID=cds2086;Parent=gene2132;Dbxref=EnsemblGenomes-Gn:azo2088,EnsemblGenomes-Tr:CAL94705,GOA:A1K7A0,InterPro:IPR000983,InterPro:IPR012902,InterPro:IPR013545,UniProtKB/TrEMBL:A1K7A0,NCBI_GP:CAL94705.1;Name=CAL94705.1;Note=Conserved hypothetical secreted protein. Homology to pp3476 of P. putida of 54%25 (tremble:Q88H85). no domains predicted. TMH in signal peptide. Has Signal Peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94705.1;transl_table=11
AM406670.1	EMBL	gene	2294825	2295301	.	-	.	ID=gene2133;Name=gspG1;gbkey=Gene;gene=gspG1;gene_biotype=protein_coding;locus_tag=azo2089
AM406670.1	EMBL	CDS	2294825	2295301	.	-	0	ID=cds2087;Parent=gene2133;Dbxref=EnsemblGenomes-Gn:azo2089,EnsemblGenomes-Tr:CAL94706,GOA:A1K7A1,InterPro:IPR000983,InterPro:IPR012902,UniProtKB/TrEMBL:A1K7A1,NCBI_GP:CAL94706.1;Name=CAL94706.1;Note=General secretion pathway protein G%2C%3B~Specificity unclear;gbkey=CDS;gene=gspG1;product=general secretion pathway protein G;protein_id=CAL94706.1;transl_table=11
AM406670.1	EMBL	gene	2295298	2297325	.	-	.	ID=gene2134;Name=gspD2;gbkey=Gene;gene=gspD2;gene_biotype=protein_coding;locus_tag=azo2090
AM406670.1	EMBL	CDS	2295298	2297325	.	-	0	ID=cds2088;Parent=gene2134;Dbxref=EnsemblGenomes-Gn:azo2090,EnsemblGenomes-Tr:CAL94707,GOA:A1K7A2,InterPro:IPR001775,InterPro:IPR004846,InterPro:IPR005644,InterPro:IPR011662,UniProtKB/TrEMBL:A1K7A2,NCBI_GP:CAL94707.1;Name=CAL94707.1;Note=Protein D is involved in the type II general secretion pathway within Gram-negative bacteria%2C a signal sequence-dependent process responsible for protein export. The most probable location of protein D is the outer membrane. This suggests that protein D constitutes the apparatus of the accessory mechanism%2C and is thus involved in transporting exoproteins from the periplasm%2C across the outer membrane%2C to the extracellular environment. Similar to trembl|Q8XTG8 (39%25). Pfam (PF00263): General (type II) secretion pathway (GSP) D protein Pfam (PF07660): Secretin and TonB N terminus short domain Pfam (PF03958): Bacterial type II/III secretion system short domain SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=gspD2;product=general secretion pathway protein D;protein_id=CAL94707.1;transl_table=11
AM406670.1	EMBL	gene	2297322	2297813	.	-	.	ID=gene2135;Name=azo2091;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2091
AM406670.1	EMBL	CDS	2297322	2297813	.	-	0	ID=cds2089;Parent=gene2135;Dbxref=EnsemblGenomes-Gn:azo2091,EnsemblGenomes-Tr:CAL94708,UniProtKB/TrEMBL:A1K7A3,NCBI_GP:CAL94708.1;Name=CAL94708.1;Note=Conserved hypothetical secreted protein. Homology to rs02976 of R. solanacearum of 35%25 (trembl|Q8XTG7(SRS)). No domains predicted. Signal peptide present. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94708.1;transl_table=11
AM406670.1	EMBL	gene	2297810	2298373	.	-	.	ID=gene2136;Name=azo2092;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2092
AM406670.1	EMBL	CDS	2297810	2298373	.	-	0	ID=cds2090;Parent=gene2136;Dbxref=EnsemblGenomes-Gn:azo2092,EnsemblGenomes-Tr:CAL94709,UniProtKB/TrEMBL:A1K7A4,NCBI_GP:CAL94709.1;Name=CAL94709.1;Note=Conserved hypothetical membrane protein. Homology to ebA1234 of Azoarcus sp. EbN1 of 38%25 (gnl|keqq|eba:ebA1234(KEGG)). no domains predicted. no signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94709.1;transl_table=11
AM406670.1	EMBL	gene	2298370	2298918	.	-	.	ID=gene2137;Name=azo2093;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2093
AM406670.1	EMBL	CDS	2298370	2298918	.	-	0	ID=cds2091;Parent=gene2137;Dbxref=EnsemblGenomes-Gn:azo2093,EnsemblGenomes-Tr:CAL94710,UniProtKB/TrEMBL:A1K7A5,NCBI_GP:CAL94710.1;Name=CAL94710.1;Note=Conserved hypothetical protein. Homology to ebA1229 of Azoarcus sp. EbN1 of 37%25 (gnl|keqq|eba:ebA1229(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94710.1;transl_table=11
AM406670.1	EMBL	gene	2298915	2299715	.	-	.	ID=gene2138;Name=azo2094;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2094
AM406670.1	EMBL	CDS	2298915	2299715	.	-	0	ID=cds2092;Parent=gene2138;Dbxref=EnsemblGenomes-Gn:azo2094,EnsemblGenomes-Tr:CAL94711,UniProtKB/TrEMBL:A1K7A6,NCBI_GP:CAL94711.1;Name=CAL94711.1;Note=Conserved hypothetical protein. Homology to ebD34 of Azoarcus sp. EbN1 of 33%25 (gnl|keqq|eba:ebD34(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94711.1;transl_table=11
AM406670.1	EMBL	gene	2299696	2301372	.	-	.	ID=gene2139;Name=gspE2;gbkey=Gene;gene=gspE2;gene_biotype=protein_coding;locus_tag=azo2095
AM406670.1	EMBL	CDS	2299696	2301372	.	-	0	ID=cds2093;Parent=gene2139;Dbxref=EnsemblGenomes-Gn:azo2095,EnsemblGenomes-Tr:CAL94712,GOA:A1K7A7,InterPro:IPR001482,InterPro:IPR007831,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7A7,NCBI_GP:CAL94712.1;Name=CAL94712.1;Note=General secretion pathway protein E (Type II traffic warden ATPase) INVOLVED IN A GENERAL SECRETION PATHWAY (GSP) FOR THE EXPORT OF PROTEINS. Similar to sprot|PILF_NEIGO (33%25) and trembl|Q82U87 (54%25). InterPro (PF00437): Bacterial type II secretion system protein E InterPro (PS50101): ATP/GTP-binding site motif A (P-loop)%3B~Specificity unclear;gbkey=CDS;gene=gspE2;product=general secretion pathway protein E;protein_id=CAL94712.1;transl_table=11
AM406670.1	EMBL	gene	2301369	2302541	.	-	.	ID=gene2140;Name=gspF2;gbkey=Gene;gene=gspF2;gene_biotype=protein_coding;locus_tag=azo2096
AM406670.1	EMBL	CDS	2301369	2302541	.	-	0	ID=cds2094;Parent=gene2140;Dbxref=EnsemblGenomes-Gn:azo2096,EnsemblGenomes-Tr:CAL94713,InterPro:IPR003004,InterPro:IPR018076,UniProtKB/TrEMBL:A1K7A8,NCBI_GP:CAL94713.1;Name=CAL94713.1;Note=General secretion pathway protein F%2Csimilar trembl|Q88HD6 (39%25). The general (type II) secretion pathway (GSP) within Gram-negative bacteria is a signal sequence-dependent process responsible for protein export. The process has two stages: exoproteins are first translocated across the inner membrane by the general signal-dependent export pathway (GEP)%2C and then across the outer membrane by a species-specific accessory mechanism. InterPro (IPR001992): Bacterial type II secretion system protein. InterPro (IPR003004): Bacterial general secretion pathway protein F Pfam (PF00482): Bacterial general secretion pathway protein F TMHMM reporting five TMH.%3B~Specificity unclear;gbkey=CDS;gene=gspF2;product=general secretion pathway protein F;protein_id=CAL94713.1;transl_table=11
AM406670.1	EMBL	gene	2302565	2303020	.	-	.	ID=gene2141;Name=gspG2;gbkey=Gene;gene=gspG2;gene_biotype=protein_coding;locus_tag=azo2097
AM406670.1	EMBL	CDS	2302565	2303020	.	-	0	ID=cds2095;Parent=gene2141;Dbxref=EnsemblGenomes-Gn:azo2097,EnsemblGenomes-Tr:CAL94714,GOA:A1K7A9,InterPro:IPR000983,InterPro:IPR010054,InterPro:IPR012902,InterPro:IPR013545,UniProtKB/TrEMBL:A1K7A9,NCBI_GP:CAL94714.1;Name=CAL94714.1;Note=General secretion pathway GSPG-related transmembrane protein%2C%3B~Specificity unclear;gbkey=CDS;gene=gspG2;product=general secretion pathway protein G;protein_id=CAL94714.1;transl_table=11
AM406670.1	EMBL	gene	2303193	2303888	.	+	.	ID=gene2142;Name=slt;gbkey=Gene;gene=slt;gene_biotype=protein_coding;locus_tag=azo2098
AM406670.1	EMBL	CDS	2303193	2303888	.	+	0	ID=cds2096;Parent=gene2142;Dbxref=EnsemblGenomes-Gn:azo2098,EnsemblGenomes-Tr:CAL94715,GOA:A1K7B0,InterPro:IPR008258,InterPro:IPR023346,InterPro:IPR025392,UniProtKB/TrEMBL:A1K7B0,NCBI_GP:CAL94715.1;Name=CAL94715.1;Note=Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) (Slt70). Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division (By similarity). flhB_rel: FlhB domain protein%3B~Family membership;gbkey=CDS;gene=slt;product=soluble lytic murein transglycosylase precursor;protein_id=CAL94715.1;transl_table=11
AM406670.1	EMBL	gene	2303995	2305512	.	+	.	ID=gene2143;Name=azo2099;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2099
AM406670.1	EMBL	CDS	2303995	2305512	.	+	0	ID=cds2097;Parent=gene2143;Dbxref=EnsemblGenomes-Gn:azo2099,EnsemblGenomes-Tr:CAL94716,InterPro:IPR006311,InterPro:IPR008557,UniProtKB/TrEMBL:A1K7B1,NCBI_GP:CAL94716.1;Name=CAL94716.1;Note=Conserved hypothetical secreted protein. Homology to xac2776 of X. axonopodis of 50%25 (trembl|Q8PIW9). Pfam: DUF839 This family consists of several bacterial proteins of unknown function. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94716.1;transl_table=11
AM406670.1	EMBL	gene	2305593	2306900	.	-	.	ID=gene2144;Name=azo2100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2100
AM406670.1	EMBL	CDS	2305593	2306900	.	-	0	ID=cds2098;Parent=gene2144;Dbxref=EnsemblGenomes-Gn:azo2100,EnsemblGenomes-Tr:CAL94717,GOA:A1K7B2,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K7B2,NCBI_GP:CAL94717.1;Name=CAL94717.1;Note=Omega-amino acid--pyruvate aminotransferase (Omega-APT) (Beta-alanine--pyruvate aminotransferase). Catalyzes transamination between a variety of omega- amino acids%2Cmono and diamines%2C and pyruvate%2C by similarity. InterPro: Aminotransferase class-III pyridoxal-phosphate TIGRFAM: bioA: adenosylmethionine-8-amino-7-oxononanoate aminotransferase%3B~High confidence in function and specificity;gbkey=CDS;product=Beta-alanine--pyruvate transaminase;protein_id=CAL94717.1;transl_table=11
AM406670.1	EMBL	gene	2307012	2307671	.	-	.	ID=gene2145;Name=azo2101;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2101
AM406670.1	EMBL	CDS	2307012	2307671	.	-	0	ID=cds2099;Parent=gene2145;Dbxref=EnsemblGenomes-Gn:azo2101,EnsemblGenomes-Tr:CAL94718,UniProtKB/TrEMBL:A1K7B3,NCBI_GP:CAL94718.1;Name=CAL94718.1;Note=Hypothetical membrane protein. No homology with hits in the database. No domains predicted. Signal peptide present. TMHMM2 reporting 1 TMH present.;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94718.1;transl_table=11
AM406670.1	EMBL	gene	2307999	2308074	.	-	.	ID=gene2146;Name=tRNA-His;gbkey=Gene;gene=tRNA-His;gene_biotype=tRNA;locus_tag=azo_tRNA_0041
AM406670.1	EMBL	tRNA	2307999	2308074	.	-	.	ID=rna46;Parent=gene2146;anticodon=(pos:complement(2308039..2308041));gbkey=tRNA;gene=tRNA-His;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-His
AM406670.1	EMBL	exon	2307999	2308074	.	-	.	ID=id47;Parent=rna46;anticodon=(pos:complement(2308039..2308041));gbkey=tRNA;gene=tRNA-His;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-His
AM406670.1	EMBL	gene	2308120	2308196	.	-	.	ID=gene2147;Name=tRNA-Arg;gbkey=Gene;gene=tRNA-Arg;gene_biotype=tRNA;locus_tag=azo_tRNA_0042
AM406670.1	EMBL	tRNA	2308120	2308196	.	-	.	ID=rna47;Parent=gene2147;anticodon=(pos:complement(2308160..2308162));gbkey=tRNA;gene=tRNA-Arg;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Arg
AM406670.1	EMBL	exon	2308120	2308196	.	-	.	ID=id48;Parent=rna47;anticodon=(pos:complement(2308160..2308162));gbkey=tRNA;gene=tRNA-Arg;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Arg
AM406670.1	EMBL	gene	2308224	2308300	.	-	.	ID=gene2148;Name=tRNA-Pro;gbkey=Gene;gene=tRNA-Pro;gene_biotype=tRNA;locus_tag=azo_tRNA_0043
AM406670.1	EMBL	tRNA	2308224	2308300	.	-	.	ID=rna48;Parent=gene2148;anticodon=(pos:complement(2308264..2308266));gbkey=tRNA;gene=tRNA-Pro;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Pro
AM406670.1	EMBL	exon	2308224	2308300	.	-	.	ID=id49;Parent=rna48;anticodon=(pos:complement(2308264..2308266));gbkey=tRNA;gene=tRNA-Pro;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Pro
AM406670.1	EMBL	gene	2308537	2308899	.	+	.	ID=gene2149;Name=dksA2;gbkey=Gene;gene=dksA2;gene_biotype=protein_coding;locus_tag=azo2102
AM406670.1	EMBL	CDS	2308537	2308899	.	+	0	ID=cds2100;Parent=gene2149;Dbxref=EnsemblGenomes-Gn:azo2102,EnsemblGenomes-Tr:CAL94719,GOA:A1K7B4,InterPro:IPR000962,InterPro:IPR012784,InterPro:IPR020458,InterPro:IPR020460,UniProtKB/TrEMBL:A1K7B4,NCBI_GP:CAL94719.1;Name=CAL94719.1;Note=DnaK suppressor protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=dksA2;product=DksA2 protein;protein_id=CAL94719.1;transl_table=11
AM406670.1	EMBL	gene	2308958	2311057	.	-	.	ID=gene2150;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=azo2103
AM406670.1	EMBL	CDS	2308958	2311057	.	-	0	ID=cds2101;Parent=gene2150;Dbxref=EnsemblGenomes-Gn:azo2103,EnsemblGenomes-Tr:CAL94720,GOA:A1K7B5,InterPro:IPR001247,InterPro:IPR003029,InterPro:IPR004087,InterPro:IPR004088,InterPro:IPR012162,InterPro:IPR012340,InterPro:IPR015847,InterPro:IPR015848,InterPro:IPR020568,InterPro:IPR022967,InterPro:IPR027408,NCBI_GP:CAL94720.1;Name=CAL94720.1;Note=Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase). Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3 to 5 direction. Involved in the RNA degradosome a multi-enzyme complex important in RNA processing and messenger RNA degradation.%3B~High confidence in function and specificity;gbkey=CDS;gene=pnp;product=polyribonucleotide nucleotidyltransferase;protein_id=CAL94720.1;transl_table=11
AM406670.1	EMBL	gene	2311255	2311524	.	-	.	ID=gene2151;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;locus_tag=azo2104
AM406670.1	EMBL	CDS	2311255	2311524	.	-	0	ID=cds2102;Parent=gene2151;Dbxref=EnsemblGenomes-Gn:azo2104,EnsemblGenomes-Tr:CAL94721,GOA:A1K7B6,InterPro:IPR000589,InterPro:IPR005290,InterPro:IPR009068,NCBI_GP:CAL94721.1;Name=CAL94721.1;Note=30S ribosomal protein S15. THIS PROTEIN IS ONE OF THE 16S RIBOSOMAL RNA BINDING PROTEINS.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsO;product=30S ribosomal protein S15;protein_id=CAL94721.1;transl_table=11
AM406670.1	EMBL	gene	2311618	2312520	.	-	.	ID=gene2152;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=azo2105
AM406670.1	EMBL	CDS	2311618	2312520	.	-	0	ID=cds2103;Parent=gene2152;Dbxref=EnsemblGenomes-Gn:azo2105,EnsemblGenomes-Tr:CAL94722,GOA:A1K7B7,InterPro:IPR002501,InterPro:IPR014780,InterPro:IPR015240,InterPro:IPR015947,InterPro:IPR020103,NCBI_GP:CAL94722.1;Name=CAL94722.1;Note=tRNA pseudouridine synthase B (EC 4.2.1.70) (Psi55 synthase) (Pseudouridylate synthase) (Uracil hydrolyase). TruB: tRNA pseudouridine synthase B%3B~High confidence in function and specificity;gbkey=CDS;gene=truB;product=tRNA pseudouridine 55 synthase;protein_id=CAL94722.1;transl_table=11
AM406670.1	EMBL	gene	2312537	2312917	.	-	.	ID=gene2153;Name=azo2106;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2106
AM406670.1	EMBL	CDS	2312537	2312917	.	-	0	ID=cds2104;Parent=gene2153;Dbxref=EnsemblGenomes-Gn:azo2106,EnsemblGenomes-Tr:CAL94723,GOA:A1K7B8,InterPro:IPR000238,InterPro:IPR015946,InterPro:IPR023799,NCBI_GP:CAL94723.1;Name=CAL94723.1;Note=Ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5terminal helix region of 16S rRNA.%3B~High confidence in function and specificity;gbkey=CDS;product=RbfA protein;protein_id=CAL94723.1;transl_table=11
AM406670.1	EMBL	gene	2312921	2315743	.	-	.	ID=gene2154;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=azo2107
AM406670.1	EMBL	CDS	2312921	2315743	.	-	0	ID=cds2105;Parent=gene2154;Dbxref=EnsemblGenomes-Gn:azo2107,EnsemblGenomes-Tr:CAL94724,GOA:A1K7B9,InterPro:IPR000178,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005225,InterPro:IPR006847,InterPro:IPR009000,InterPro:IPR009061,InterPro:IPR013575,InterPro:IPR015760,InterPro:IPR023115,InterPro:IPR027417,NCBI_GP:CAL94724.1;Name=CAL94724.1;Note=Translation initiation factor IF-2. One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.%3B~Family membership;gbkey=CDS;gene=infB;product=translation initiation factor IF-2;protein_id=CAL94724.1;transl_table=11
AM406670.1	EMBL	gene	2315757	2317232	.	-	.	ID=gene2155;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=azo2108
AM406670.1	EMBL	CDS	2315757	2317232	.	-	0	ID=cds2106;Parent=gene2155;Dbxref=EnsemblGenomes-Gn:azo2108,EnsemblGenomes-Tr:CAL94725,GOA:A1K7C0,InterPro:IPR003029,InterPro:IPR004087,InterPro:IPR004088,InterPro:IPR009019,InterPro:IPR010213,InterPro:IPR010214,InterPro:IPR010995,InterPro:IPR012340,InterPro:IPR013735,InterPro:IPR015946,InterPro:IPR022967,InterPro:IPR025249,InterPro:IPR028620,UniProtKB/TrEMBL:A1K7C0,NCBI_GP:CAL94725.1;Name=CAL94725.1;Note=Transcription elongation protein NusA (N utilization substance protein A) (L factor). NUSA PARTICIPATES IN BOTH THE TERMINATION AND ANTITERMINATION OF TRANSCRIPTION. NUSA BINDS DIRECTLY TO THE CORE ENZYME OF THE DNA-DEPENDENT RNA POLYMERASE. NUSA ALSO INTERACTS WITH LAMBDA N PROTEIN RNA RHO FACTOR AND PERHAPS NUSB. BINDS RNA. Belongs to the nusA family 50%25 Similar to the transcription elongation protein NusA%2C from E.coli. NUSA_ECOLI/ P03003 TREMBL:Q7W9A6 InterPro: S1 RNA binding domain IPR004087 KH_dom. IPR009019 KH_prok. IPR008994 Nucleic_acid_OB. PF00575 S1%3B 1. SM00278 HhH1%3B 3 SM00322 KH%3B 2 SM00316 S1%3B 1 TIGR01953%3B NusA%3B 1. TIGR01952 nusA_arch%3B 1 TIG01954 nusA_Cterm_rpt%3B 2 taut: 4-oxalocrotonate tautomerase%3B~High confidence in function and specificity;gbkey=CDS;gene=nusA;product=putative N utilization substance protein A;protein_id=CAL94725.1;transl_table=11
AM406670.1	EMBL	gene	2317260	2317694	.	-	.	ID=gene2156;Name=azo2109;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2109
AM406670.1	EMBL	CDS	2317260	2317694	.	-	0	ID=cds2107;Parent=gene2156;Dbxref=EnsemblGenomes-Gn:azo2109,EnsemblGenomes-Tr:CAL94726,GOA:A1K7C1,InterPro:IPR003728,InterPro:IPR028989,InterPro:IPR028998,NCBI_GP:CAL94726.1;Name=CAL94726.1;Note=Conserved hypothetical protein. Homology to NMB1641 of N.meningitidis of 53%25 (nme:NMB1641(KEGG)). Has PF02576%2CUncharacterised BCR%2C YhbC family COG0779%3BThis entry describes proteins of unknown function. InterPro%3BIPR003728. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94726.1;transl_table=11
AM406670.1	EMBL	gene	2317918	2318988	.	-	.	ID=gene2157;Name=azo2110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2110
AM406670.1	EMBL	CDS	2317918	2318988	.	-	0	ID=cds2108;Parent=gene2157;Dbxref=EnsemblGenomes-Gn:azo2110,EnsemblGenomes-Tr:CAL94727,GOA:A1K7C2,InterPro:IPR000748,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR018496,InterPro:IPR020103,UniProtKB/TrEMBL:A1K7C2,NCBI_GP:CAL94727.1;Name=CAL94727.1;Note=Conserved hypothetical protein%3B~Family membership;gbkey=CDS;product=pseudouridylate synthase;protein_id=CAL94727.1;transl_table=11
AM406670.1	EMBL	gene	2318924	2319532	.	-	.	ID=gene2158;Name=scpB;gbkey=Gene;gene=scpB;gene_biotype=protein_coding;locus_tag=azo2111
AM406670.1	EMBL	CDS	2318924	2319532	.	-	0	ID=cds2109;Parent=gene2158;Dbxref=EnsemblGenomes-Gn:azo2111,EnsemblGenomes-Tr:CAL94728,GOA:A1K7C3,InterPro:IPR005234,InterPro:IPR011991,UniProtKB/TrEMBL:A1K7C3,NCBI_GP:CAL94728.1;Name=CAL94728.1;Note=Putative segregation and condensation protein B%2C%3B~Conserved hypothetical protein;gbkey=CDS;gene=scpB;product=putative segregation and condensation protein B;protein_id=CAL94728.1;transl_table=11
AM406670.1	EMBL	gene	2319510	2320340	.	-	.	ID=gene2159;Name=azo2112;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2112
AM406670.1	EMBL	CDS	2319510	2320340	.	-	0	ID=cds2110;Parent=gene2159;Dbxref=EnsemblGenomes-Gn:azo2112,EnsemblGenomes-Tr:CAL94729,GOA:A1K7C4,InterPro:IPR003768,UniProtKB/TrEMBL:A1K7C4,NCBI_GP:CAL94729.1;Name=CAL94729.1;Note=Hypothetical protein%2C 51%25 identity(64%25 similarity) to TrEMBL%3BQ8XWT4. Has PF02616%2C Uncharacterised ACR%2CCOG1354%3BThis entry describes proteins of unknown function. InterPro%3B IPR003768%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94729.1;transl_table=11
AM406670.1	EMBL	gene	2320366	2321025	.	-	.	ID=gene2160;Name=azo2113;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2113
AM406670.1	EMBL	CDS	2320366	2321025	.	-	0	ID=cds2111;Parent=gene2160;Dbxref=EnsemblGenomes-Gn:azo2113,EnsemblGenomes-Tr:CAL94730,GOA:A1K7C5,InterPro:IPR008915,UniProtKB/TrEMBL:A1K7C5,NCBI_GP:CAL94730.1;Name=CAL94730.1;Note=Conserved hypothetical membrane protein. Homology to NE1726 of N.europaea of 61%25 (trembl:Q82TY8). InterPro: IPR008915%3B Peptidase_M50. Pfam: PF02163%3B Peptidase_M50. Non-secretory protein signal peptide probability: 0.235. TMHMM predicted 4 transmembrane helices%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94730.1;transl_table=11
AM406670.1	EMBL	gene	2321072	2321704	.	-	.	ID=gene2161;Name=azo2114;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2114
AM406670.1	EMBL	CDS	2321072	2321704	.	-	0	ID=cds2112;Parent=gene2161;Dbxref=EnsemblGenomes-Gn:azo2114,EnsemblGenomes-Tr:CAL94731,GOA:A1K7C6,InterPro:IPR006070,InterPro:IPR017945,UniProtKB/TrEMBL:A1K7C6,NCBI_GP:CAL94731.1;Name=CAL94731.1;Note=InterPro: Sua5/YciO/YrdC/YwlC protein family TIGR00057: Sua5/YciO/YrdC/YwlC family p%3B~High confidence in function and specificity;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94731.1;transl_table=11
AM406670.1	EMBL	gene	2321712	2322563	.	-	.	ID=gene2162;Name=trpH;gbkey=Gene;gene=trpH;gene_biotype=protein_coding;locus_tag=azo2115
AM406670.1	EMBL	CDS	2321712	2322563	.	-	0	ID=cds2113;Parent=gene2162;Dbxref=EnsemblGenomes-Gn:azo2115,EnsemblGenomes-Tr:CAL94732,GOA:A1K7C7,InterPro:IPR003141,InterPro:IPR004013,InterPro:IPR016195,UniProtKB/TrEMBL:A1K7C7,NCBI_GP:CAL94732.1;Name=CAL94732.1;Note=TREMBL:Q7VZ25: 48%25 identity%3B 57%25 similarity SWISSPROT:TRPH_HAEIN:Protein trpH (38%25 identity). InterPro:IPR003141%3B PHP_N.PHP domain C-terminal region. The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region Pfam: PF02231%3B PHP_N%3B SMART: SM00481%3B POLIIIAc%3B thiE: thiamine-phosphate pyrophosphoryl%3B~High confidence in function and specificity;gbkey=CDS;gene=trpH;product=conserved hypothetical protein;protein_id=CAL94732.1;transl_table=11
AM406670.1	EMBL	gene	2322571	2323473	.	-	.	ID=gene2163;Name=azo2116;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2116
AM406670.1	EMBL	CDS	2322571	2323473	.	-	0	ID=cds2114;Parent=gene2163;Dbxref=EnsemblGenomes-Gn:azo2116,EnsemblGenomes-Tr:CAL94733,GOA:A1K7C8,InterPro:IPR000073,InterPro:IPR029058,UniProtKB/TrEMBL:A1K7C8,NCBI_GP:CAL94733.1;Name=CAL94733.1;Note=Probable Serine hydrolase-like protein (EC 3.1.-.-). TREMBL:Q8Y0A9: 49%25 identity%2C 63%25 similarity. Pfam: abhydrolase%3B thioesterase TIGRFAM: murB: UDP-N-acetylenolpyruvoylglucosamine No transmembrane helix (predicted by TMHMM)%3B~Function unclear;gbkey=CDS;product=probable hydrolase or acytransferase;protein_id=CAL94733.1;transl_table=11
AM406670.1	EMBL	gene	2323493	2323834	.	+	.	ID=gene2164;Name=azo2117;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2117
AM406670.1	EMBL	CDS	2323493	2323834	.	+	0	ID=cds2115;Parent=gene2164;Dbxref=EnsemblGenomes-Gn:azo2117,EnsemblGenomes-Tr:CAL94734,UniProtKB/TrEMBL:A1K7C9,NCBI_GP:CAL94734.1;Name=CAL94734.1;Note=Hypothetical protein. Very bad homology with hits. Has No domains%2C repeats%2C motifs or features detected.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94734.1;transl_table=11
AM406670.1	EMBL	gene	2323896	2324195	.	+	.	ID=gene2165;Name=azo2118;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2118
AM406670.1	EMBL	CDS	2323896	2324195	.	+	0	ID=cds2116;Parent=gene2165;Dbxref=EnsemblGenomes-Gn:azo2118,EnsemblGenomes-Tr:CAL94735,UniProtKB/TrEMBL:A1K7D0,NCBI_GP:CAL94735.1;Name=CAL94735.1;Note=Conserved hypothetical protein. Very Bad homology with hits in the database. Has SMART%3BSM00438%3BIPR000967%2CZnf_NFX1%3BThis domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C%2C where X can be any amino acid%2C and numbers in brackets indicate the number of residues. The two position can be either his or cys. This domain is found in the human transcriptional repressor NK-X1%2C a repressor of HLA-DRA transcription%3B the Drosophila shuttle craft protein%2C which plays an essential role during the late stages of embryonic neurogenesis%3B and a yeast hypothetical protein YNL023C.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94735.1;transl_table=11
AM406670.1	EMBL	gene	2324230	2325735	.	+	.	ID=gene2166;Name=pcD;gbkey=Gene;gene=pcD;gene_biotype=protein_coding;locus_tag=azo2119
AM406670.1	EMBL	CDS	2324230	2325735	.	+	0	ID=cds2117;Parent=gene2166;Dbxref=EnsemblGenomes-Gn:azo2119,EnsemblGenomes-Tr:CAL94736,GOA:A1K7D1,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR029510,UniProtKB/TrEMBL:A1K7D1,NCBI_GP:CAL94736.1;Name=CAL94736.1;Note=probable piperideine-6-carboxylate dehydrogenase. Homology to pcd of F. lutescens of 53%25 (trembl|Q9F1U8) InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=pcD;product=probable piperideine-6-carboxylate dehydrogenase;protein_id=CAL94736.1;transl_table=11
AM406670.1	EMBL	gene	2325732	2326607	.	-	.	ID=gene2167;Name=ylqF;gbkey=Gene;gene=ylqF;gene_biotype=protein_coding;locus_tag=azo2120
AM406670.1	EMBL	CDS	2325732	2326607	.	-	0	ID=cds2118;Parent=gene2167;Dbxref=EnsemblGenomes-Gn:azo2120,EnsemblGenomes-Tr:CAL94737,GOA:A1K7D2,InterPro:IPR006073,InterPro:IPR016478,InterPro:IPR019991,InterPro:IPR023179,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7D2,NCBI_GP:CAL94737.1;Name=CAL94737.1;Note=Hypothetical protein MG442 homolog (K05_orf271). TREMBL:Q7NR72: 48%25 identity%2C 66%25 similarity InterPro%3B IPR005289%3B GTP-bindding_dom. InterPro%3B IPR002917%3B MMR_HSR1. Pfam%3B PF01926%3B MMR_HSR1%3B thiE: thiamine-phosphate pyrophosphor NO signal peptide No transmembrane helices%3B~Specificity unclear;gbkey=CDS;gene=ylqF;product=probable GTPase;protein_id=CAL94737.1;transl_table=11
AM406670.1	EMBL	gene	2326914	2327123	.	+	.	ID=gene2168;Name=cspA;gbkey=Gene;gene=cspA;gene_biotype=protein_coding;locus_tag=azo2121
AM406670.1	EMBL	CDS	2326914	2327123	.	+	0	ID=cds2119;Parent=gene2168;Dbxref=EnsemblGenomes-Gn:azo2121,EnsemblGenomes-Tr:CAL94738,GOA:A1K7D3,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012156,InterPro:IPR012340,InterPro:IPR019844,UniProtKB/TrEMBL:A1K7D3,NCBI_GP:CAL94738.1;Name=CAL94738.1;Note=Cold shock-like protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=cspA;product=cold shock-like protein;protein_id=CAL94738.1;transl_table=11
AM406670.1	EMBL	gene	2327305	2329257	.	+	.	ID=gene2169;Name=deaD;gbkey=Gene;gene=deaD;gene_biotype=protein_coding;locus_tag=azo2122
AM406670.1	EMBL	CDS	2327305	2329257	.	+	0	ID=cds2120;Parent=gene2169;Dbxref=EnsemblGenomes-Gn:azo2122,EnsemblGenomes-Tr:CAL94739,GOA:A1K7D4,InterPro:IPR000629,InterPro:IPR001650,InterPro:IPR005580,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR014014,InterPro:IPR027417,InterPro:IPR028618,UniProtKB/TrEMBL:A1K7D4,NCBI_GP:CAL94739.1;Name=CAL94739.1;Note=Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD). HAS A HELIX-DESTABILIZING ACTIVITY. PLAYS A KEY ROLE IN OPTIMAL CELL GROWTH AT LOW TEMPERATURE AND IS REQUIRED FOR NORMAL CELL DIVISION (BY SIMILARITY).%3B~Family membership;gbkey=CDS;gene=deaD;product=ATP-dependent RNA helicase;protein_id=CAL94739.1;transl_table=11
AM406670.1	EMBL	gene	2329257	2329883	.	+	.	ID=gene2170;Name=tesA2;gbkey=Gene;gene=tesA2;gene_biotype=protein_coding;locus_tag=azo2123
AM406670.1	EMBL	CDS	2329257	2329883	.	+	0	ID=cds2121;Parent=gene2170;Dbxref=EnsemblGenomes-Gn:azo2123,EnsemblGenomes-Tr:CAL94740,GOA:A1K7D5,InterPro:IPR013831,UniProtKB/TrEMBL:A1K7D5,NCBI_GP:CAL94740.1;Name=CAL94740.1;Note=Putative acyl-CoA thioesterase. Homology to tesA of E. coli of 32%25 (sprot|TESA_ECOLI) Hydrolyzes long chain acyl thioesters (c12-c18): 2-lysophosphatidylcholine + h(2)o %3D glycerophosphocholine + a fatty acid anion. InterPro: GDSL lipolytic enzyme (IPR001087) Pfam: Lipase/Acylhydrolase GDSL-like motif signal peptide no TMH%3B~Family membership;gbkey=CDS;gene=tesA2;product=putative acyl-CoA thioesterase I;protein_id=CAL94740.1;transl_table=11
AM406670.1	EMBL	gene	2329949	2330935	.	+	.	ID=gene2171;Name=azo2124;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2124
AM406670.1	EMBL	CDS	2329949	2330935	.	+	0	ID=cds2122;Parent=gene2171;Dbxref=EnsemblGenomes-Gn:azo2124,EnsemblGenomes-Tr:CAL94741,GOA:A1K7D6,InterPro:IPR002575,InterPro:IPR011009,UniProtKB/TrEMBL:A1K7D6,NCBI_GP:CAL94741.1;Name=CAL94741.1;Note=Conserved hypothetical protein. Homology to rsc0540 of R. solanacearum of 71%25 (trembl|Q8Y1Z7). Pfam: DUF227. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94741.1;transl_table=11
AM406670.1	EMBL	gene	2331002	2331898	.	+	.	ID=gene2172;Name=azo2125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2125
AM406670.1	EMBL	CDS	2331002	2331898	.	+	0	ID=cds2123;Parent=gene2172;Dbxref=EnsemblGenomes-Gn:azo2125,EnsemblGenomes-Tr:CAL94742,InterPro:IPR000073,InterPro:IPR029058,UniProtKB/TrEMBL:A1K7D7,NCBI_GP:CAL94742.1;Name=CAL94742.1;Note=TREMBL:Q9HT60:67%25 identity%2C 80%25 similarity to putative hydrolase. Hypothetical protein yqjL. InterPro: Alpha/beta hydrolase fold Pfam: abhydrolase%3B thioesterase domain uppS: undecaprenyl diphosphate synthase%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94742.1;transl_table=11
AM406670.1	EMBL	gene	2331887	2332435	.	-	.	ID=gene2173;Name=yaeQ;gbkey=Gene;gene=yaeQ;gene_biotype=protein_coding;locus_tag=azo2126
AM406670.1	EMBL	CDS	2331887	2332435	.	-	0	ID=cds2124;Parent=gene2173;Dbxref=EnsemblGenomes-Gn:azo2126,EnsemblGenomes-Tr:CAL94743,InterPro:IPR009822,InterPro:IPR011335,UniProtKB/TrEMBL:A1K7D8,NCBI_GP:CAL94743.1;Name=CAL94743.1;Note=Putative cytoplasmic protein [yaeQ]%2C49%25 identity (64%25 similarity) to TrEMBL%3BQ79ID7. TrEMBL%3BQ8FKZ7(57%25 identity) SwissProt%3BP52100. Has PF07152%2C YaeQ protein%3BThis family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH%2C a specialised transcription elongation protein. YaeQ is known to compensate for loss of RfaH function. No Signal Peptide or TMH present.%3B~High confidence in function and specificity;gbkey=CDS;gene=yaeQ;product=putative cytoplasmic protein [yaeQ];protein_id=CAL94743.1;transl_table=11
AM406670.1	EMBL	gene	2332443	2333228	.	-	.	ID=gene2174;Name=azo2127;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2127
AM406670.1	EMBL	CDS	2332443	2333228	.	-	0	ID=cds2125;Parent=gene2174;Dbxref=EnsemblGenomes-Gn:azo2127,EnsemblGenomes-Tr:CAL94744,UniProtKB/TrEMBL:A1K7D9,NCBI_GP:CAL94744.1;Name=CAL94744.1;Note=Conserved hypothetical protein. Homology to ebA6182 Azoarcus sp. EbN1 of 55%25 (gnl|keqq|eba:ebA6182(KEGG)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94744.1;transl_table=11
AM406670.1	EMBL	gene	2333487	2334902	.	+	.	ID=gene2175;Name=azo2128;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2128
AM406670.1	EMBL	CDS	2333487	2334902	.	+	0	ID=cds2126;Parent=gene2175;Dbxref=EnsemblGenomes-Gn:azo2128,EnsemblGenomes-Tr:CAL94745,InterPro:IPR000160,InterPro:IPR029787,UniProtKB/TrEMBL:A1K7E0,NCBI_GP:CAL94745.1;Name=CAL94745.1;Note=GGDEF-domain containing protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=GGDEF-domain containing protein;protein_id=CAL94745.1;transl_table=11
AM406670.1	EMBL	gene	2334907	2335401	.	-	.	ID=gene2176;Name=azo2129;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2129
AM406670.1	EMBL	CDS	2334907	2335401	.	-	0	ID=cds2127;Parent=gene2176;Dbxref=EnsemblGenomes-Gn:azo2129,EnsemblGenomes-Tr:CAL94746,UniProtKB/TrEMBL:A1K7E1,NCBI_GP:CAL94746.1;Name=CAL94746.1;Note=Hypothetical protein%2C 32%25 identity to TrEMBL%3BQ6MXJ8. No Signal Peptide%2C features or Domains present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94746.1;transl_table=11
AM406670.1	EMBL	gene	2335612	2336391	.	+	.	ID=gene2177;Name=fabI2;gbkey=Gene;gene=fabI2;gene_biotype=protein_coding;locus_tag=azo2130
AM406670.1	EMBL	CDS	2335612	2336391	.	+	0	ID=cds2128;Parent=gene2177;Dbxref=EnsemblGenomes-Gn:azo2130,EnsemblGenomes-Tr:CAL94747,GOA:A1K7E2,InterPro:IPR002347,InterPro:IPR014358,InterPro:IPR016040,UniProtKB/TrEMBL:A1K7E2,NCBI_GP:CAL94747.1;Name=CAL94747.1;Note=Catalytic activity :-acyl-[acyl-carrier protein] + nad(+) %3D trans- 2%2C3-dehydroacyl-[acyl-carrier protein] + nadh. pathway:- fatty acid biosynthesis pathway%3B second reduction step. Entry name SWISSPROT:FABI_ECOLI InterPro IPR002198%3B ADH_short. Identities %3D 108/252 (42%25) Pfam PF00106%3B adh_short%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.00 Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=fabI2;product=probable enoyl-[acyl-carrier-protein] reductase;protein_id=CAL94747.1;transl_table=11
AM406670.1	EMBL	gene	2336402	2336998	.	+	.	ID=gene2178;Name=azo2131;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2131
AM406670.1	EMBL	CDS	2336402	2336998	.	+	0	ID=cds2129;Parent=gene2178;Dbxref=EnsemblGenomes-Gn:azo2131,EnsemblGenomes-Tr:CAL94748,UniProtKB/TrEMBL:A1K7E3,NCBI_GP:CAL94748.1;Name=CAL94748.1;Note=Conserved hypothetical protein. Homology to Daro03002758 of Dechloromonas aromatica of 51%25 (gi|53730017|ref|ZP_00150562.2|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94748.1;transl_table=11
AM406670.1	EMBL	gene	2337022	2337999	.	-	.	ID=gene2179;Name=azo2132;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2132
AM406670.1	EMBL	CDS	2337022	2337999	.	-	0	ID=cds2130;Parent=gene2179;Dbxref=EnsemblGenomes-Gn:azo2132,EnsemblGenomes-Tr:CAL94749,GOA:A1K7E4,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR027065,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7E4,NCBI_GP:CAL94749.1;Name=CAL94749.1;Note=Conserved hypothetical ATPase. Homology to Daro03000733 of Dechloromonas aromatica of 64%25 (gi|41725756|ref|ZP_00152514.1|(NBCI ENTREZ)). Domain structure: 101 aa - 293 aa AAA-protein. InterPro: AAA-protein (ATPases associated with various cellular activities) (IPR003959)%3B AAA ATPase superfamily (IPR003593). Pfam: ATPases associated with various cellular activities. no signal peptide. no TMHS%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical ATPase;protein_id=CAL94749.1;transl_table=11
AM406670.1	EMBL	gene	2338181	2338852	.	+	.	ID=gene2180;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=azo2133
AM406670.1	EMBL	CDS	2338181	2338852	.	+	0	ID=cds2131;Parent=gene2180;Dbxref=EnsemblGenomes-Gn:azo2133,EnsemblGenomes-Tr:CAL94750,GOA:A1K7E5,InterPro:IPR001474,InterPro:IPR018234,InterPro:IPR020602,UniProtKB/TrEMBL:A1K7E5,NCBI_GP:CAL94750.1;Name=CAL94750.1;Note=GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I). folE: GTP cyclohydrolase I%3B~High confidence in function and specificity;gbkey=CDS;gene=folE;product=FolE protein;protein_id=CAL94750.1;transl_table=11
AM406670.1	EMBL	gene	2338856	2339185	.	-	.	ID=gene2181;Name=azo2134;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2134
AM406670.1	EMBL	CDS	2338856	2339185	.	-	0	ID=cds2132;Parent=gene2181;Dbxref=EnsemblGenomes-Gn:azo2134,EnsemblGenomes-Tr:CAL94751,InterPro:IPR021732,UniProtKB/TrEMBL:A1K7E6,NCBI_GP:CAL94751.1;Name=CAL94751.1;Note=Hypothetical protein%2C has no good homology over the entire length with hits in Database. TrEMBL Q9HT58 Hypothetical protein PA5515 [PA5515] [Pseudomonas aeruginosa. No Signal Peptide or TMH being reported as present.%3B~Family membership;gbkey=CDS;product=hypothetical protein;protein_id=CAL94751.1;transl_table=11
AM406670.1	EMBL	gene	2339196	2340776	.	-	.	ID=gene2182;Name=azo2135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2135
AM406670.1	EMBL	CDS	2339196	2340776	.	-	0	ID=cds2133;Parent=gene2182;Dbxref=EnsemblGenomes-Gn:azo2135,EnsemblGenomes-Tr:CAL94752,GOA:A1K7E7,InterPro:IPR001204,UniProtKB/TrEMBL:A1K7E7,NCBI_GP:CAL94752.1;Name=CAL94752.1;Note=Probable low-affinity phosphate transporter protein.Involved in phosphate transport depending on the proton motive force. InterPro: Phosphate transporter family Similar to PitA a cation-phosphate transporter in E.coli. No signal peptide%3B~High confidence in function and specificity;gbkey=CDS;product=putative phosphate permease;protein_id=CAL94752.1;transl_table=11
AM406670.1	EMBL	gene	2340834	2341187	.	-	.	ID=gene2183;Name=azo2136;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2136
AM406670.1	EMBL	CDS	2340834	2341187	.	-	0	ID=cds2134;Parent=gene2183;Dbxref=EnsemblGenomes-Gn:azo2136,EnsemblGenomes-Tr:CAL94753,InterPro:IPR004518,InterPro:IPR011394,UniProtKB/TrEMBL:A1K7E8,NCBI_GP:CAL94753.1;Name=CAL94753.1;Note=Hypothetical protein ypjD. TREMBL:Q7W7V7: 56%25 identity%2C 65%25 similarity SPROT:YPJD_BACSU:P42979: 27%25 identity%2C 49%25 similarity This group of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in Escherichia coli. InterPro:IPR004518%3B MazG. Pfam: PF03819 No transmembrane helices (TMHMM predicted)%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94753.1;transl_table=11
AM406670.1	EMBL	gene	2341245	2342090	.	-	.	ID=gene2184;Name=azo2137;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2137
AM406670.1	EMBL	CDS	2341245	2342090	.	-	0	ID=cds2135;Parent=gene2184;Dbxref=EnsemblGenomes-Gn:azo2137,EnsemblGenomes-Tr:CAL94754,GOA:A1K7E9,InterPro:IPR007473,InterPro:IPR029063,UniProtKB/TrEMBL:A1K7E9,NCBI_GP:CAL94754.1;Name=CAL94754.1;Note=Conserved hypothetical protein. Homology to cv2345 of C. violaceum of 54%25 (trembl|Q7NVJ7). no domains predicted. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94754.1;transl_table=11
AM406670.1	EMBL	gene	2342306	2342851	.	+	.	ID=gene2185;Name=azo2138;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2138
AM406670.1	EMBL	CDS	2342306	2342851	.	+	0	ID=cds2136;Parent=gene2185;Dbxref=EnsemblGenomes-Gn:azo2138,EnsemblGenomes-Tr:CAL94755,GOA:A1K7F0,InterPro:IPR001451,InterPro:IPR011004,UniProtKB/TrEMBL:A1K7F0,NCBI_GP:CAL94755.1;Name=CAL94755.1;Note=Hypothetical protein PA3753. A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide%2C which%2C in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [1]%2C has been shown to form a left-handed parallel beta helix TREMBL:Q9A526: 55%25 identity%3B 75%25 similarity bacterial transferase family protein. Superfamily: ferripyochelin binding protein InterPro:IPR001451%3B Hexapep_transf.Bacterial transferase hexapeptide repeat Pfam:PF00132%3B Hexapep%3B presence of DUF99 domain. No signal peptide (Signal P) or transmembrane helices (TMHMM).%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94755.1;transl_table=11
AM406670.1	EMBL	gene	2342971	2343666	.	+	.	ID=gene2186;Name=azo2139;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2139
AM406670.1	EMBL	CDS	2342971	2343666	.	+	0	ID=cds2137;Parent=gene2186;Dbxref=EnsemblGenomes-Gn:azo2139,EnsemblGenomes-Tr:CAL94756,InterPro:IPR007497,UniProtKB/TrEMBL:A1K7F1,NCBI_GP:CAL94756.1;Name=CAL94756.1;Note=Conserved hypothetical secreted protein. Homology to CV3305 of C.violaceum of 37%25 (tremble:Q7NSW4). Has PF04402%2C Protein of unknown function (DUF541)%3BIPR007497:Members of this family have so far been found in bacteria and mouse SwissProt or TrEMBL entries. However possible family members have also been identified in translated rat (Genbank:AW144450) and human (Genbank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes%2C and thus regulate NF-kappa-B activity. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94756.1;transl_table=11
AM406670.1	EMBL	gene	2343704	2344009	.	+	.	ID=gene2187;Name=azo2140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2140
AM406670.1	EMBL	CDS	2343704	2344009	.	+	0	ID=cds2138;Parent=gene2187;Dbxref=EnsemblGenomes-Gn:azo2140,EnsemblGenomes-Tr:CAL94757,UniProtKB/TrEMBL:A1K7F2,NCBI_GP:CAL94757.1;Name=CAL94757.1;Note=Conserved hypothetical secreted protein. Homology to ebD110 of Azoarcus sp. EbN1 of 46%25 (gnl|keqq|eba:ebD110(KEGG)). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94757.1;transl_table=11
AM406670.1	EMBL	gene	2344066	2344623	.	+	.	ID=gene2188;Name=azo2141;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2141
AM406670.1	EMBL	CDS	2344066	2344623	.	+	0	ID=cds2139;Parent=gene2188;Dbxref=EnsemblGenomes-Gn:azo2141,EnsemblGenomes-Tr:CAL94758,InterPro:IPR000064,UniProtKB/TrEMBL:A1K7F3,NCBI_GP:CAL94758.1;Name=CAL94758.1;Note=Conserved hypothetical secreted protein. Homology to CV2523 of Chromobacterium violaceum of 48%25 (trembl:Q7NV23). Pfam: NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins. Signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94758.1;transl_table=11
AM406670.1	EMBL	gene	2344733	2345164	.	+	.	ID=gene2189;Name=azo2142;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2142
AM406670.1	EMBL	CDS	2344733	2345164	.	+	0	ID=cds2140;Parent=gene2189;Dbxref=EnsemblGenomes-Gn:azo2142,EnsemblGenomes-Tr:CAL94759,GOA:A1K7F4,InterPro:IPR000644,UniProtKB/TrEMBL:A1K7F4,NCBI_GP:CAL94759.1;Name=CAL94759.1;Note=Hypothetical protein MK0525 (OrfX). trembl|Q9V230 (Q9V230) Inosine-5'-monophosphate dehydrogenase related%3B 34%25 identity%2C 55%25 similarity. InterPro: CBS domain (IPR005857%2C IPR004840) TIGRFAM: kpsF/GutQ family TMHMM predicted absence of transmembrane helices%3B~Specificity unclear;gbkey=CDS;product=putative inosine-5'-monophosphate dehydrogenase related protein;protein_id=CAL94759.1;transl_table=11
AM406670.1	EMBL	gene	2345219	2345494	.	-	.	ID=gene2190;Name=azo2143;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2143
AM406670.1	EMBL	CDS	2345219	2345494	.	-	0	ID=cds2141;Parent=gene2190;Dbxref=EnsemblGenomes-Gn:azo2143,EnsemblGenomes-Tr:CAL94760,GOA:A1K7F5,InterPro:IPR007060,InterPro:IPR023081,NCBI_GP:CAL94760.1;Name=CAL94760.1;Note=Conserved hypothetical membrane protein. Homology to CV3460 of C. violaceum of 54%25 (trembl|Q7NSG6(SRS)). Pfam: Septum formation initiator DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil. no signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94760.1;transl_table=11
AM406670.1	EMBL	gene	2345585	2346874	.	-	.	ID=gene2191;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=azo2144
AM406670.1	EMBL	CDS	2345585	2346874	.	-	0	ID=cds2142;Parent=gene2191;Dbxref=EnsemblGenomes-Gn:azo2144,EnsemblGenomes-Tr:CAL94761,GOA:A1K7F6,InterPro:IPR000941,InterPro:IPR020809,InterPro:IPR020810,InterPro:IPR020811,InterPro:IPR029017,InterPro:IPR029065,NCBI_GP:CAL94761.1;Name=CAL94761.1;Note=Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase).Enolase is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate. 66%25 Enolase. Pfam:PF00113%3B enolase%3B 1.PF03952%3B enolase_N%3B 1. TIGRFAMs:TIGR01060%3B eno%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=eno;product=putative enolase;protein_id=CAL94761.1;transl_table=11
AM406670.1	EMBL	gene	2346959	2347798	.	-	.	ID=gene2192;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=azo2145
AM406670.1	EMBL	CDS	2346959	2347798	.	-	0	ID=cds2143;Parent=gene2192;Dbxref=EnsemblGenomes-Gn:azo2145,EnsemblGenomes-Tr:CAL94762,GOA:A1K7F7,InterPro:IPR006218,InterPro:IPR006269,InterPro:IPR013785,NCBI_GP:CAL94762.1;Name=CAL94762.1;Note=2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) (Phospho-2- dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS). Homology to kdsA of Pseudomonas aeruginosa of 45%25 (gi|6647573|sp|Q9ZFK4|KDSA_PSEAE(SwissProt (ExPASy))). Tigrfam: 3-deoxy-8-phosphooctulonate synthase. This HMM describes 3-deoxy-8-phosphooctulonate synthase. Alternate names include 2-dehydro-3-deoxyphosphooctonate aldolase%2C 3-deoxy-d-manno-octulosonic acid 8-phosphate and KDO-8 phosphate synthetase. It catalyzes the aldol condensation of phosphoenolpyruvate with D-arabinose 5-phosphate:%2Cphosphoenolpyruvate + D-arabinose 5-phosphate + H2O %3D 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate%2C In Gram-negative bacteria%2C this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate%2C part of the oligosaccharide core of lipopolysaccharide. Pfam: DAHP synthetase I family. No signal peptide. No TMHs.%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=kdsA;product=2-dehydro-3-deoxyphosphooctonate aldolase;protein_id=CAL94762.1;transl_table=11
AM406670.1	EMBL	gene	2347810	2349450	.	-	.	ID=gene2193;Name=pyrG;gbkey=Gene;gene=pyrG;gene_biotype=protein_coding;locus_tag=azo2146
AM406670.1	EMBL	CDS	2347810	2349450	.	-	0	ID=cds2144;Parent=gene2193;Dbxref=EnsemblGenomes-Gn:azo2146,EnsemblGenomes-Tr:CAL94763,GOA:A1K7F8,InterPro:IPR004468,InterPro:IPR017456,InterPro:IPR017926,InterPro:IPR027417,InterPro:IPR029062,NCBI_GP:CAL94763.1;Name=CAL94763.1;Note=CTP synthase (CTP synthetase) (UTP--ammonia ligase) Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen (By similarity). InterPro: CTP synthase PyrG: CTP synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=pyrG;product=CTP synthase;protein_id=CAL94763.1;transl_table=11
AM406670.1	EMBL	gene	2349604	2350314	.	+	.	ID=gene2194;Name=azo2147;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2147
AM406670.1	EMBL	CDS	2349604	2350314	.	+	0	ID=cds2145;Parent=gene2194;Dbxref=EnsemblGenomes-Gn:azo2147,EnsemblGenomes-Tr:CAL94764,UniProtKB/TrEMBL:A1K7F9,NCBI_GP:CAL94764.1;Name=CAL94764.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide present. TMHMM2 reporting 3 TMH present.;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94764.1;transl_table=11
AM406670.1	EMBL	gene	2350311	2351624	.	-	.	ID=gene2195;Name=sndH;gbkey=Gene;gene=sndH;gene_biotype=protein_coding;locus_tag=azo2148
AM406670.1	EMBL	CDS	2350311	2351624	.	-	0	ID=cds2146;Parent=gene2195;Dbxref=EnsemblGenomes-Gn:azo2148,EnsemblGenomes-Tr:CAL94765,GOA:A1K7G0,InterPro:IPR011041,InterPro:IPR011042,InterPro:IPR012938,UniProtKB/TrEMBL:A1K7G0,NCBI_GP:CAL94765.1;Name=CAL94765.1;Note=L-sorbosone dehydrogenase. Converts L-sorbosone to 2-keto-l-gulonic acid (2kga). 63%25 Peptidase_M14.IPR000595%3B cNMP_binding. Signal peptide:present.%3B~High confidence in function and specificity;gbkey=CDS;gene=sndH;product=putative L-sorbosone dehydrogenase;protein_id=CAL94765.1;transl_table=11
AM406670.1	EMBL	gene	2351727	2353712	.	-	.	ID=gene2196;Name=acsA;gbkey=Gene;gene=acsA;gene_biotype=protein_coding;locus_tag=azo2149
AM406670.1	EMBL	CDS	2351727	2353712	.	-	0	ID=cds2147;Parent=gene2196;Dbxref=EnsemblGenomes-Gn:azo2149,EnsemblGenomes-Tr:CAL94766,GOA:A1K7G1,InterPro:IPR000873,InterPro:IPR005914,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:A1K7G1,NCBI_GP:CAL94766.1;Name=CAL94766.1;Note=INVOLVED IN POLY-3-HYDROXYBUTYRATE DEGRADATION. ACTIVATES ACETOACETATE TO ACETOACETYL-COA. catalytic activity :-atp + acetate + coa %3D amp + diphosphate + acetyl-coa. Entry name SWISSPROT:ACSA_ECOLI Prim. accession # P27550 Identities %3D 164/624 (26%25) InterPro IPR000873%3B AMP-bind. Pfam PF00501%3B AMP-binding%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=acsA;product=putative acetoacetyl-CoA synthase;protein_id=CAL94766.1;transl_table=11
AM406670.1	EMBL	gene	2353748	2354155	.	-	.	ID=gene2197;Name=azo2150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2150
AM406670.1	EMBL	CDS	2353748	2354155	.	-	0	ID=cds2148;Parent=gene2197;Dbxref=EnsemblGenomes-Gn:azo2150,EnsemblGenomes-Tr:CAL94767,GOA:A1K7G2,InterPro:IPR029069,UniProtKB/TrEMBL:A1K7G2,NCBI_GP:CAL94767.1;Name=CAL94767.1;Note=Probable Hypothetical protein AQ_1494. TREMBL:Q7WIS5: 37%25 identity%3B 51%25 similarity. This family contains a wide variety of enzymes%2C principally thioesterases. This family includes 4HBT (EC: 3.1.2.23) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate%2C they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. InterPro:IPR006683%3B Thioestr_supf. Pfam:PF03061%3B 4HBT InterPro: 4-hydroxybenzoyl-CoA thioesterase family active site No transmembrane helices TIGR00051: conserved hypothetical protein%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94767.1;transl_table=11
AM406670.1	EMBL	gene	2354316	2355959	.	+	.	ID=gene2198;Name=etf1;gbkey=Gene;gene=etf1;gene_biotype=protein_coding;locus_tag=azo2151
AM406670.1	EMBL	CDS	2354316	2355959	.	+	0	ID=cds2149;Parent=gene2198;Dbxref=EnsemblGenomes-Gn:azo2151,EnsemblGenomes-Tr:CAL94768,GOA:A1K7G3,InterPro:IPR003042,InterPro:IPR007859,InterPro:IPR017896,UniProtKB/TrEMBL:A1K7G3,NCBI_GP:CAL94768.1;Name=CAL94768.1;Note=Probable electron transfer flavoprotein-ubiquinone oxidoreductase. Homology to etfdh of H. sapiens of 57%25 (sprot|ETFD_HUMAN) Accepts electrons and reduces ubiquinone. Pfam: FAD_binding_3%3B ETF_QO no signal peptide no TMHs;gbkey=CDS;gene=etf1;product=probable electron transfer flavoprotein-ubiquinone oxidoreductase;protein_id=CAL94768.1;transl_table=11
AM406670.1	EMBL	gene	2356040	2357077	.	-	.	ID=gene2199;Name=azo2152;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2152
AM406670.1	EMBL	CDS	2356040	2357077	.	-	0	ID=cds2150;Parent=gene2199;Dbxref=EnsemblGenomes-Gn:azo2152,EnsemblGenomes-Tr:CAL94769,InterPro:IPR007433,UniProtKB/TrEMBL:A1K7G4,NCBI_GP:CAL94769.1;Name=CAL94769.1;Note=Hypothetical secreted protein. Homology to GSU2347 of G. sulfurreducens of 26%25 (tremblnew|AAR35721(SRS)). Has PF04338%3BProtein of unknown function%2C DUF481%3B This family includes several proteins of uncharacterised function. Signal P reporting signal peptide present. NO TMH reported to be present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94769.1;transl_table=11
AM406670.1	EMBL	gene	2357201	2357677	.	-	.	ID=gene2200;Name=azo2153;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2153
AM406670.1	EMBL	CDS	2357201	2357677	.	-	0	ID=cds2151;Parent=gene2200;Dbxref=EnsemblGenomes-Gn:azo2153,EnsemblGenomes-Tr:CAL94770,InterPro:IPR007410,UniProtKB/TrEMBL:A1K7G5,NCBI_GP:CAL94770.1;Name=CAL94770.1;Note=Conserved hypothetical secreted protein. Homology to PP2380 of P. putida of 47%25 (trembl:Q88KB0). Has PF04314%2C Protein of unknown function (DUF461)%3BPutative membrane or periplasmic protein. Signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94770.1;transl_table=11
AM406670.1	EMBL	gene	2357725	2358195	.	-	.	ID=gene2201;Name=azo2154;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2154
AM406670.1	EMBL	CDS	2357725	2358195	.	-	0	ID=cds2152;Parent=gene2201;Dbxref=EnsemblGenomes-Gn:azo2154,EnsemblGenomes-Tr:CAL94771,InterPro:IPR012336,UniProtKB/TrEMBL:A1K7G6,NCBI_GP:CAL94771.1;Name=CAL94771.1;Note=Conserved hypothetical secreted protein. 33%25 similarity to TrEMBL Q8XQF8 PROBABLE SIGNAL PEPTIDE PROTEIN [RS05314] [Ralstonia solanacearum (Pseudomonas solanacearum)]. No domains predicted. Signal P reporting signal peptide present. No TMH reported being present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94771.1;transl_table=11
AM406670.1	EMBL	gene	2358192	2359436	.	-	.	ID=gene2202;Name=azo2155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2155
AM406670.1	EMBL	CDS	2358192	2359436	.	-	0	ID=cds2153;Parent=gene2202;Dbxref=EnsemblGenomes-Gn:azo2155,EnsemblGenomes-Tr:CAL94772,InterPro:IPR006311,InterPro:IPR011040,UniProtKB/TrEMBL:A1K7G7,NCBI_GP:CAL94772.1;Name=CAL94772.1;Note=Conserved hypothetical secreted protein. Homology to rsc1270 of R. solanacearum of 44%25 (trembl|Q8XQF7(SRS)). no domains predicted .signal peptide present. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94772.1;transl_table=11
AM406670.1	EMBL	gene	2359411	2361702	.	-	.	ID=gene2203;Name=azo2156;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2156
AM406670.1	EMBL	CDS	2359411	2361702	.	-	0	ID=cds2154;Parent=gene2203;Dbxref=EnsemblGenomes-Gn:azo2156,EnsemblGenomes-Tr:CAL94773,GOA:A1K7G8,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1K7G8,NCBI_GP:CAL94773.1;Name=CAL94773.1;Note=TonB-dependent outer membrane receptor involved in the first step of iron internalization and metabolism. A short conserved region so called the tonB-box is present in the sequence. This domain is involved in the interaction of the receptor with the TonB protein. Similar to a E. coli iron(III) dicitrate transport protein fecA precursor. InterPro: TonB-dependent receptor protein arcC: carbamate kinase%3B~Function unclear;gbkey=CDS;product=probable TonB-dependent receptor;protein_id=CAL94773.1;transl_table=11
AM406670.1	EMBL	gene	2361956	2362348	.	-	.	ID=gene2204;Name=azo2157;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2157
AM406670.1	EMBL	CDS	2361956	2362348	.	-	0	ID=cds2155;Parent=gene2204;Dbxref=EnsemblGenomes-Gn:azo2157,EnsemblGenomes-Tr:CAL94774,InterPro:IPR021333,UniProtKB/TrEMBL:A1K7G9,NCBI_GP:CAL94774.1;Name=CAL94774.1;Note=Conserved hypothetical secreted protein. Homology to BB1293 of Bordetella bronchiseptica of 38%25 (trembl:Q7WMU7). No domains predicted. Signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94774.1;transl_table=11
AM406670.1	EMBL	gene	2362426	2366367	.	-	.	ID=gene2205;Name=purL;gbkey=Gene;gene=purL;gene_biotype=protein_coding;locus_tag=azo2158
AM406670.1	EMBL	CDS	2362426	2366367	.	-	0	ID=cds2156;Parent=gene2205;Dbxref=EnsemblGenomes-Gn:azo2158,EnsemblGenomes-Tr:CAL94775,GOA:A1K7H0,InterPro:IPR000728,InterPro:IPR010073,InterPro:IPR010918,InterPro:IPR016188,InterPro:IPR017926,InterPro:IPR022940,InterPro:IPR029062,UniProtKB/TrEMBL:A1K7H0,NCBI_GP:CAL94775.1;Name=CAL94775.1;Note=Phosphoribosylformylglycinamidine synthase (Phosphoribosylformylglycinamidine synthetase) (FGAM synthase) (FGAM synthetase) (Formylglycinamide ribotide amidotransferase) (FGARAT) (FGAR amidotransferase) InterPro: AIR synthase related protein%3B~High confidence in function and specificity;gbkey=CDS;gene=purL;product=phosphoribosylformylglycinamidine synthase;protein_id=CAL94775.1;transl_table=11
AM406670.1	EMBL	gene	2366563	2367378	.	+	.	ID=gene2206;Name=azo2159;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2159
AM406670.1	EMBL	CDS	2366563	2367378	.	+	0	ID=cds2157;Parent=gene2206;Dbxref=EnsemblGenomes-Gn:azo2159,EnsemblGenomes-Tr:CAL94776,GOA:A1K7H1,InterPro:IPR000326,UniProtKB/TrEMBL:A1K7H1,NCBI_GP:CAL94776.1;Name=CAL94776.1;Note=Conserved hypothetical membrane protein. Homology to CV3583 of C. violaceum of 30%25 (trembl|Q7NS44(SRS)). Pfam: PAP2 superfamily no signal peptide 8 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conservd hypothetical membrane protein;protein_id=CAL94776.1;transl_table=11
AM406670.1	EMBL	gene	2367375	2368289	.	+	.	ID=gene2207;Name=azo2160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2160
AM406670.1	EMBL	CDS	2367375	2368289	.	+	0	ID=cds2158;Parent=gene2207;Dbxref=EnsemblGenomes-Gn:azo2160,EnsemblGenomes-Tr:CAL94777,InterPro:IPR022791,UniProtKB/TrEMBL:A1K7H2,NCBI_GP:CAL94777.1;Name=CAL94777.1;Note=Conserved hypothetical membrane protein. Homology to smc02385 of S. meliloti of 32%25 (trembl:Q92KI4). No domains predicted. Signal peptide. 6 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94777.1;transl_table=11
AM406670.1	EMBL	gene	2368307	2369353	.	+	.	ID=gene2208;Name=azo2161;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2161
AM406670.1	EMBL	CDS	2368307	2369353	.	+	0	ID=cds2159;Parent=gene2208;Dbxref=EnsemblGenomes-Gn:azo2161,EnsemblGenomes-Tr:CAL94778,GOA:A1K7H3,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:A1K7H3,NCBI_GP:CAL94778.1;Name=CAL94778.1;Note=Glycosyltransferase%2C%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL94778.1;transl_table=11
AM406670.1	EMBL	gene	2369350	2370978	.	+	.	ID=gene2209;Name=azo2162;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2162
AM406670.1	EMBL	CDS	2369350	2370978	.	+	0	ID=cds2160;Parent=gene2209;Dbxref=EnsemblGenomes-Gn:azo2162,EnsemblGenomes-Tr:CAL94779,UniProtKB/TrEMBL:A1K7H4,NCBI_GP:CAL94779.1;Name=CAL94779.1;Note=Hypothetical protein AQ_1704.%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein%2C similar to glycosyltransferases;protein_id=CAL94779.1;transl_table=11
AM406670.1	EMBL	gene	2370975	2371727	.	+	.	ID=gene2210;Name=azo2163;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2163
AM406670.1	EMBL	CDS	2370975	2371727	.	+	0	ID=cds2161;Parent=gene2210;Dbxref=EnsemblGenomes-Gn:azo2163,EnsemblGenomes-Tr:CAL94780,GOA:A1K7H5,InterPro:IPR000326,UniProtKB/TrEMBL:A1K7H5,NCBI_GP:CAL94780.1;Name=CAL94780.1;Note=Conserved hypothetical membrane protein. Homology to Daro03001595 of Dechloromonas aromatica of 38%25 (gi|53730877|ref|ZP_00348993.1|(NBCI ENTREZ)). InterPro IPR008934%3B AcPase_VanPerase. IPR000326%3B PA_PTPase. Pfam PF01569%3B PAP2%3B 1. Number of predicted TMHs: 6 Prediction: Non-secretory protein Signal peptide probability: 0.023%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94780.1;transl_table=11
AM406670.1	EMBL	gene	2371731	2372156	.	-	.	ID=gene2211;Name=azo2164;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2164
AM406670.1	EMBL	CDS	2371731	2372156	.	-	0	ID=cds2162;Parent=gene2211;Dbxref=EnsemblGenomes-Gn:azo2164,EnsemblGenomes-Tr:CAL94781,InterPro:IPR007607,UniProtKB/TrEMBL:A1K7H6,NCBI_GP:CAL94781.1;Name=CAL94781.1;Note=Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94781.1;transl_table=11
AM406670.1	EMBL	gene	2372204	2372563	.	-	.	ID=gene2212;Name=azo2165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2165
AM406670.1	EMBL	CDS	2372204	2372563	.	-	0	ID=cds2163;Parent=gene2212;Dbxref=EnsemblGenomes-Gn:azo2165,EnsemblGenomes-Tr:CAL94782,UniProtKB/TrEMBL:A1K7H7,NCBI_GP:CAL94782.1;Name=CAL94782.1;Note=Conserved hypothetical secreted protein. Homology to ebA6137 of Azoarcus sp. EbN1 of 34%25 (gnl|keqq|eba:ebA6137(KEGG)). No domains predicted. Signal peptide present. No TMHs Coiled Coil present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94782.1;transl_table=11
AM406670.1	EMBL	gene	2372572	2373516	.	-	.	ID=gene2213;Name=azo2166;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2166
AM406670.1	EMBL	CDS	2372572	2373516	.	-	0	ID=cds2164;Parent=gene2213;Dbxref=EnsemblGenomes-Gn:azo2166,EnsemblGenomes-Tr:CAL94783,InterPro:IPR011055,InterPro:IPR016047,UniProtKB/TrEMBL:A1K7H8,NCBI_GP:CAL94783.1;Name=CAL94783.1;Note=InterPro: Peptidase family M23/M37%3B~Specificity unclear;gbkey=CDS;product=peptidase;protein_id=CAL94783.1;transl_table=11
AM406670.1	EMBL	gene	2373743	2376109	.	-	.	ID=gene2214;Name=ppsA1;gbkey=Gene;gene=ppsA1;gene_biotype=protein_coding;locus_tag=azo2167
AM406670.1	EMBL	CDS	2373743	2376109	.	-	0	ID=cds2165;Parent=gene2214;Dbxref=EnsemblGenomes-Gn:azo2167,EnsemblGenomes-Tr:CAL94784,GOA:A1K7H9,InterPro:IPR000121,InterPro:IPR002192,InterPro:IPR006319,InterPro:IPR008279,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR015813,InterPro:IPR018274,InterPro:IPR023151,UniProtKB/TrEMBL:A1K7H9,NCBI_GP:CAL94784.1;Name=CAL94784.1;Note=Phosphoenolpyruvate synthase(Pyruvatewater dikinase)(PEP synthase). Essential step in gluconeogenesis when pyruvate and lactate are used as a carbon source.Catalytic activity:atp + pyruvate + h(2)o %3D amp + phosphoenolpyruvate + phosphate. 66%25 PEP_mobile.IPR006319%3B PEP_synth.IPR000121%3BPEP_utilizers.IPR002192%3B PPDK_N_term. Pfam:PF00391%3B PEP-utilizers%3B 1.PF02896%3B PEP-utilizers_C%3B 1. PF01326%3B PPDK_N%3B 1. TIGRFAMs:TIGR01418%3B PEP_synth%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=ppsA1;product=putative phosphoenolpyruvate synthase;protein_id=CAL94784.1;transl_table=11
AM406670.1	EMBL	gene	2376269	2377102	.	+	.	ID=gene2215;Name=azo2168;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2168
AM406670.1	EMBL	CDS	2376269	2377102	.	+	0	ID=cds2166;Parent=gene2215;Dbxref=EnsemblGenomes-Gn:azo2168,EnsemblGenomes-Tr:CAL94785,GOA:A1K7I0,InterPro:IPR005177,InterPro:IPR026530,NCBI_GP:CAL94785.1;Name=CAL94785.1;Note=Conserved hypothetical protein. Homolog to RSC1420 of Ralstonia solanacearum of 63%25 (trembl:Q8XZH5). Has PF03618%2C Domain of unknown function (DUF299)%3B IPR005177 %3B Family of bacterial proteins with no known function. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94785.1;transl_table=11
AM406670.1	EMBL	gene	2377163	2378341	.	+	.	ID=gene2216;Name=azo2169;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2169
AM406670.1	EMBL	CDS	2377163	2378341	.	+	0	ID=cds2167;Parent=gene2216;Dbxref=EnsemblGenomes-Gn:azo2169,EnsemblGenomes-Tr:CAL94786,InterPro:IPR021292,UniProtKB/TrEMBL:A1K7I1,NCBI_GP:CAL94786.1;Name=CAL94786.1;Note=Conserved hypothetical secreted protein. Homology to BPP2392 of B.parapertussis of 42%25 (trembl:Q7W7W7). Signal P reporting signal peptide present. No TMH present. No domains predicted%3B~Family membership;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94786.1;transl_table=11
AM406670.1	EMBL	gene	2378368	2378784	.	+	.	ID=gene2217;Name=msrB;gbkey=Gene;gene=msrB;gene_biotype=protein_coding;locus_tag=azo2170
AM406670.1	EMBL	CDS	2378368	2378784	.	+	0	ID=cds2168;Parent=gene2217;Dbxref=EnsemblGenomes-Gn:azo2170,EnsemblGenomes-Tr:CAL94787,GOA:A1K7I2,InterPro:IPR002579,InterPro:IPR011057,InterPro:IPR028427,UniProtKB/TrEMBL:A1K7I2,NCBI_GP:CAL94787.1;Name=CAL94787.1;Note=Conserved hypothetical peptide methionine sulfoxide reductase. Homology to msrB of S. elongatus of 64%25. Peptide methionine sulphoxide reductase reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide%2C Met(O)%2C to methionine. InterPro: Domain of unknown function DUF25 (IPR002579). Pfam: Domain of unknown function DUF25. Tigrfam: TIGR00357: PilB-related protein. no TMHs%3B~Family membership;gbkey=CDS;gene=msrB;product=conserved hypothetical peptide methionine sulfoxide reductase;protein_id=CAL94787.1;transl_table=11
AM406670.1	EMBL	gene	2378890	2380518	.	+	.	ID=gene2218;Name=trg;gbkey=Gene;gene=trg;gene_biotype=protein_coding;locus_tag=azo2171
AM406670.1	EMBL	CDS	2378890	2380518	.	+	0	ID=cds2169;Parent=gene2218;Dbxref=EnsemblGenomes-Gn:azo2171,EnsemblGenomes-Tr:CAL94788,GOA:A1K7I3,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR024478,UniProtKB/TrEMBL:A1K7I3,NCBI_GP:CAL94788.1;Name=CAL94788.1;Note=The Trg transducer mediates chemotactic response to galactose and ribose by interacting%2C respectively%2C with sugar-occupied galactose- and ribose-binding proteins. Adaptation is linked to methylation of specific glutamyl residues of the Trg protein. Similar to sprot|MCP3_ECOLI (27%25)and to TREMBL:Q88AC6. InterPro (IPR004089): Bacterial chemotaxis sensory transducer InterPro (IPR003660): HAMP InterPro (IPR004090): Methyl-accepting chemotaxis protein Pfam (PF00672): HAMP Pfam (PF00015): Methyl-accepting chemotaxis protein (MCP) signaling domain Pfam (PF05227): CHASE3 domain TMHMM reporting two TMH.%3B~Specificity unclear;gbkey=CDS;gene=trg;product=putative ribose and galactose chemoreceptor protein;protein_id=CAL94788.1;transl_table=11
AM406670.1	EMBL	gene	2380606	2381787	.	-	.	ID=gene2219;Name=thlA;gbkey=Gene;gene=thlA;gene_biotype=protein_coding;locus_tag=azo2172
AM406670.1	EMBL	CDS	2380606	2381787	.	-	0	ID=cds2170;Parent=gene2219;Dbxref=EnsemblGenomes-Gn:azo2172,EnsemblGenomes-Tr:CAL94789,GOA:A1K7I4,InterPro:IPR002155,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR020613,InterPro:IPR020616,InterPro:IPR020617,UniProtKB/TrEMBL:A1K7I4,NCBI_GP:CAL94789.1;Name=CAL94789.1;Note=Acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase):- catalytic activity:-2 acetyl-coa %3D coa + acetoacetyl-coa. Entry name SWISSPROT:THLA_CLOAB Prim. accession # P45359 Identities %3D 205/392 (52%25) InterPro IPR002155%3B Thiolase. Pfam PF00108%3B thiolase%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.022 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=thlA;product=probable acetyl-coa acetyltransferase (acetoacetyl-coa thiolase).;protein_id=CAL94789.1;transl_table=11
AM406670.1	EMBL	gene	2381808	2382734	.	-	.	ID=gene2220;Name=cobD1;gbkey=Gene;gene=cobD1;gene_biotype=protein_coding;locus_tag=azo2173
AM406670.1	EMBL	CDS	2381808	2382734	.	-	0	ID=cds2171;Parent=gene2220;Dbxref=EnsemblGenomes-Gn:azo2173,EnsemblGenomes-Tr:CAL94790,GOA:A1K7I5,InterPro:IPR004485,UniProtKB/TrEMBL:A1K7I5,NCBI_GP:CAL94790.1;Name=CAL94790.1;Note=Cobalamin biosynthesis protein cobD. Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group (By similarity). TMHMM reporting 4 transmembrane helices TIGRFAM: cbiB: cobalamin biosynthesis protein Cbi%3B~High confidence in function and specificity;gbkey=CDS;gene=cobD1;product=cobalamin biosynthesis transmembrane protein;protein_id=CAL94790.1;transl_table=11
AM406670.1	EMBL	gene	2382839	2383312	.	-	.	ID=gene2221;Name=azo2174;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2174
AM406670.1	EMBL	CDS	2382839	2383312	.	-	0	ID=cds2172;Parent=gene2221;Dbxref=EnsemblGenomes-Gn:azo2174,EnsemblGenomes-Tr:CAL94791,GOA:A1K7I6,InterPro:IPR000086,InterPro:IPR015797,UniProtKB/TrEMBL:A1K7I6,NCBI_GP:CAL94791.1;Name=CAL94791.1;Note=Region start changed from 2383430 to 2383313 (-117 bases);gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94791.1;transl_table=11
AM406670.1	EMBL	gene	2383583	2386957	.	-	.	ID=gene2222;Name=pilY1A;gbkey=Gene;gene=pilY1A;gene_biotype=protein_coding;locus_tag=azo2175
AM406670.1	EMBL	CDS	2383583	2386957	.	-	0	ID=cds2173;Parent=gene2222;Dbxref=EnsemblGenomes-Gn:azo2175,EnsemblGenomes-Tr:CAL94792,InterPro:IPR008707,UniProtKB/TrEMBL:A1K7I7,NCBI_GP:CAL94792.1;Name=CAL94792.1;Note=PilY1 is a large protein with C-terminal homology to the PilC2 protein of Neisseria gonorrhoeae%2C thought to be a fimbrial tip-associated adhesin%2C and which%2C like PilY1%2C is involved in fimbrial assembly. Similar to trembl|Q8XW00 (31%25). Pfam (PF01839): FG-GAP repeat SignalP reporting Signal peptide%3B~Function unclear;gbkey=CDS;gene=pilY1A;product=putative type 4 pilus biogenesis protein;protein_id=CAL94792.1;transl_table=11
AM406670.1	EMBL	gene	2386969	2387559	.	-	.	ID=gene2223;Name=azo2176;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2176
AM406670.1	EMBL	CDS	2386969	2387559	.	-	0	ID=cds2174;Parent=gene2223;Dbxref=EnsemblGenomes-Gn:azo2176,EnsemblGenomes-Tr:CAL94793,UniProtKB/TrEMBL:A1K7I8,NCBI_GP:CAL94793.1;Name=CAL94793.1;Note=Hypothetical secreted protein. Homology to RS00045 of R. solanacearum of 25%25 (trembl|Q8XVZ9(SRS)) No domains predicted Sinal P reporting singal peptide present. No TMH being reported.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94793.1;transl_table=11
AM406670.1	EMBL	gene	2387559	2388581	.	-	.	ID=gene2224;Name=pilW;gbkey=Gene;gene=pilW;gene_biotype=protein_coding;locus_tag=azo2177
AM406670.1	EMBL	CDS	2387559	2388581	.	-	0	ID=cds2175;Parent=gene2224;Dbxref=EnsemblGenomes-Gn:azo2177,EnsemblGenomes-Tr:CAL94794,InterPro:IPR012902,UniProtKB/TrEMBL:A1K7I9,NCBI_GP:CAL94794.1;Name=CAL94794.1;Note=In Pseudomonas aeruginosa%2C the PilW and PilX proteins are membrane located%2C possess the hydrophobic N-terminus characteristic of prepilin-like proteins%2C and appear to belong to the GspJ and GspK group of proteins that are required for protein secretion in a wide range of Gram-negative bacteria. These findings increase the similarities between the fimbrial biogenesis and the Gsp-based protein-secretion supersystems. Similar to trembl|Q8XVZ8 (29%25). Smart (SM00438): Repressor of transcription TMHMM reporting one TMH. SignalP reporting Signal peptide.%3B~Function unclear;gbkey=CDS;gene=pilW;product=putative type 4 pilus biogenesis protein;protein_id=CAL94794.1;transl_table=11
AM406670.1	EMBL	gene	2388592	2389143	.	-	.	ID=gene2225;Name=azo2178;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2178
AM406670.1	EMBL	CDS	2388592	2389143	.	-	0	ID=cds2176;Parent=gene2225;Dbxref=EnsemblGenomes-Gn:azo2178,EnsemblGenomes-Tr:CAL94795,UniProtKB/TrEMBL:A1K7J0,NCBI_GP:CAL94795.1;Name=CAL94795.1;Note=Family membership;gbkey=CDS;product=probABLE TYPE 4 FIMBRIAL BIOGENESIS RELATEDTRANSMEMBRANE PROTEIN;protein_id=CAL94795.1;transl_table=11
AM406670.1	EMBL	gene	2389188	2389595	.	-	.	ID=gene2226;Name=azo2179;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2179
AM406670.1	EMBL	CDS	2389188	2389595	.	-	0	ID=cds2177;Parent=gene2226;Dbxref=EnsemblGenomes-Gn:azo2179,EnsemblGenomes-Tr:CAL94796,GOA:A1K7J1,InterPro:IPR022346,UniProtKB/TrEMBL:A1K7J1,NCBI_GP:CAL94796.1;Name=CAL94796.1;Note=Probable type-4 fimbrial pilin related signal peptide protein%2C32%25 Identity to TrEMBL%3BQ8XVZ6%2CQ7NTE6. Has Signal peptide. Has COG4970%2C FimT%2C Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94796.1;transl_table=11
AM406670.1	EMBL	gene	2389690	2390103	.	-	.	ID=gene2227;Name=azo2180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2180
AM406670.1	EMBL	CDS	2389690	2390103	.	-	0	ID=cds2178;Parent=gene2227;Dbxref=EnsemblGenomes-Gn:azo2180,EnsemblGenomes-Tr:CAL94797,GOA:A1K7J2,InterPro:IPR000983,InterPro:IPR012902,UniProtKB/TrEMBL:A1K7J2,NCBI_GP:CAL94797.1;Name=CAL94797.1;Note=In P. aeruginosa PilE is probable involved in pilus biogenesis and in twitching motility. Similarity to PilE of Ralstonia eutropha (33%25) TMHMM reporting one TMhelix. Pfam: pilin domain%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical prepilin like protein;protein_id=CAL94797.1;transl_table=11
AM406670.1	EMBL	gene	2390211	2390861	.	-	.	ID=gene2228;Name=azo2181;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2181
AM406670.1	EMBL	CDS	2390211	2390861	.	-	0	ID=cds2179;Parent=gene2228;Dbxref=EnsemblGenomes-Gn:azo2181,EnsemblGenomes-Tr:CAL94798,InterPro:IPR011969,InterPro:IPR021109,UniProtKB/TrEMBL:A1K7J3,NCBI_GP:CAL94798.1;Name=CAL94798.1;Note=Conserved hypothetical secreted protein. Homology to pa4048 of P. aeruginosa of 33%25 (trembl|Q9HWY0). no domains. signal peptide. no TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94798.1;transl_table=11
AM406670.1	EMBL	gene	2390978	2391172	.	-	.	ID=gene2229;Name=azo2182;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2182
AM406670.1	EMBL	CDS	2390978	2391172	.	-	0	ID=cds2180;Parent=gene2229;Dbxref=EnsemblGenomes-Gn:azo2182,EnsemblGenomes-Tr:CAL94799,InterPro:IPR025906,UniProtKB/TrEMBL:A1K7J4,NCBI_GP:CAL94799.1;Name=CAL94799.1;Note=Conserved hypothetical protein. Homology to ebA5103 of Azoarcus sp. EbN1 of 57%25 (gnl|keqq|eba:ebA5103(KEGG)). no domains predicted. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94799.1;transl_table=11
AM406670.1	EMBL	gene	2391193	2391678	.	-	.	ID=gene2230;Name=azo2183;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2183
AM406670.1	EMBL	CDS	2391193	2391678	.	-	0	ID=cds2181;Parent=gene2230;Dbxref=EnsemblGenomes-Gn:azo2183,EnsemblGenomes-Tr:CAL94800,InterPro:IPR007551,NCBI_GP:CAL94800.1;Name=CAL94800.1;Note=Conserved hypothetical protein%2C 57%25 identity(77%25 Similarity) to SwissProt%3BQ8XWC5. SwissProt%3BQ82SQ9(60%25 identity) Has (IPR007551)PF04461%2C Protein of unknown function (DUF520)%3BFamily of uncharacterised proteins. Signal Peptide or TMH not present.%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94800.1;transl_table=11
AM406670.1	EMBL	gene	2391697	2392020	.	-	.	ID=gene2231;Name=yaiE;gbkey=Gene;gene=yaiE;gene_biotype=protein_coding;locus_tag=azo2184
AM406670.1	EMBL	CDS	2391697	2392020	.	-	0	ID=cds2182;Parent=gene2231;Dbxref=EnsemblGenomes-Gn:azo2184,EnsemblGenomes-Tr:CAL94801,InterPro:IPR009664,InterPro:IPR011051,InterPro:IPR014710,NCBI_GP:CAL94801.1;Name=CAL94801.1;Note=Hypothetical protein%2C64%25 identical to TrEMBL%3BQ8XWC2 Has PF06865%2C Protein of unknown function (DUF1255)%3BIPR009664 :This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown. No Signal peptide or TMH not present.%3B~High confidence in function and specificity;gbkey=CDS;gene=yaiE;product=conserved hypothetical protein;protein_id=CAL94801.1;transl_table=11
AM406670.1	EMBL	gene	2392036	2392263	.	-	.	ID=gene2232;Name=azo2185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2185
AM406670.1	EMBL	CDS	2392036	2392263	.	-	0	ID=cds2183;Parent=gene2232;Dbxref=EnsemblGenomes-Gn:azo2185,EnsemblGenomes-Tr:CAL94802,InterPro:IPR021249,UniProtKB/TrEMBL:A1K7J7,NCBI_GP:CAL94802.1;Name=CAL94802.1;Note=Conserved hypothetical membrane protein. Homology to NMA1807 of Neisseria meningitidis of 41%25 (trembl|Q9JTE8(SRS)). No domains predicted. TMHMM reporting 2 TMH present. NO Signal Peptide being reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94802.1;transl_table=11
AM406670.1	EMBL	gene	2392276	2393505	.	-	.	ID=gene2233;Name=argG;gbkey=Gene;gene=argG;gene_biotype=protein_coding;locus_tag=azo2186
AM406670.1	EMBL	CDS	2392276	2393505	.	-	0	ID=cds2184;Parent=gene2233;Dbxref=EnsemblGenomes-Gn:azo2186,EnsemblGenomes-Tr:CAL94803,GOA:A1K7J8,InterPro:IPR001518,InterPro:IPR014729,InterPro:IPR018223,InterPro:IPR023434,InterPro:IPR024074,NCBI_GP:CAL94803.1;Name=CAL94803.1;Note=Argininosuccinate synthase%2C argG. Similar to SWISSPROT:ASSY_NITEU (81%25). Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate%2C AMP and pyrophosphate. InterPro (PF00764): Argininosuccinate synthase InterPro (TIGR00032): Argininosuccinate synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=argG;product=ArgG protein;protein_id=CAL94803.1;transl_table=11
AM406670.1	EMBL	gene	2393568	2394503	.	-	.	ID=gene2234;Name=argF;gbkey=Gene;gene=argF;gene_biotype=protein_coding;locus_tag=azo2187
AM406670.1	EMBL	CDS	2393568	2394503	.	-	0	ID=cds2185;Parent=gene2234;Dbxref=EnsemblGenomes-Gn:azo2187,EnsemblGenomes-Tr:CAL94804,GOA:A1K7J9,InterPro:IPR002292,InterPro:IPR006130,InterPro:IPR006131,InterPro:IPR006132,InterPro:IPR024904,NCBI_GP:CAL94804.1;Name=CAL94804.1;Note=Ornithine carbamoyltransferase%2C argF. Similar to sprot|OTC_NITEU (76%25) and to sprot|OTC_RALSO (71%25). The ornithine carbamoyltransferases are a family of enzymes that catalyse the production of citrulline from carbamoyl-phosphate and ornithine. This reaction is part of the arginine biosynthetic pathway. TIGRFAM: ornithine carbamoyltransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=argF;product=ArgF protein;protein_id=CAL94804.1;transl_table=11
AM406670.1	EMBL	gene	2394503	2395693	.	-	.	ID=gene2235;Name=argD;gbkey=Gene;gene=argD;gene_biotype=protein_coding;locus_tag=azo2188
AM406670.1	EMBL	CDS	2394503	2395693	.	-	0	ID=cds2186;Parent=gene2235;Dbxref=EnsemblGenomes-Gn:azo2188,EnsemblGenomes-Tr:CAL94805,GOA:A1K7K0,InterPro:IPR004636,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K7K0,NCBI_GP:CAL94805.1;Name=CAL94805.1;Note=Probable acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT). Homology to argD of Anavaena sp. of 46%25 (sprot|ARGD_ANASP). Involved in both the arginine and lysine biosynthetic pathways. Tigrfam: argD: acetylornithine and succinylornithine aminotransferases Pfam: Aminotransferase class-III%3B~High confidence in function and specificity;gbkey=CDS;gene=argD;product=acetylornithine transaminase;protein_id=CAL94805.1;transl_table=11
AM406670.1	EMBL	gene	2395933	2396217	.	+	.	ID=gene2236;Name=azo2189;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2189
AM406670.1	EMBL	CDS	2395933	2396217	.	+	0	ID=cds2187;Parent=gene2236;Dbxref=EnsemblGenomes-Gn:azo2189,EnsemblGenomes-Tr:CAL94806,InterPro:IPR021969,UniProtKB/TrEMBL:A1K7K1,NCBI_GP:CAL94806.1;Name=CAL94806.1;Note=Conserved hypothetical protein. Homology to bpp2544 of P. pararpertussis of 51%25 (TREMBL:Q7W7H5). no signal peptide. no TMHs. No domains predicted.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94806.1;transl_table=11
AM406670.1	EMBL	gene	2396348	2396614	.	-	.	ID=gene2237;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=azo2190
AM406670.1	EMBL	CDS	2396348	2396614	.	-	0	ID=cds2188;Parent=gene2237;Dbxref=EnsemblGenomes-Gn:azo2190,EnsemblGenomes-Tr:CAL94807,GOA:A1K7K2,InterPro:IPR002583,NCBI_GP:CAL94807.1;Name=CAL94807.1;Note=30S ribosomal protein S20. Binds directly to 16S ribosomal RNA.%3B~Family membership;gbkey=CDS;gene=rpsT;product=30S ribosomal protein S20;protein_id=CAL94807.1;transl_table=11
AM406670.1	EMBL	gene	2396768	2398306	.	+	.	ID=gene2238;Name=mviN;gbkey=Gene;gene=mviN;gene_biotype=protein_coding;locus_tag=azo2191
AM406670.1	EMBL	CDS	2396768	2398306	.	+	0	ID=cds2189;Parent=gene2238;Dbxref=EnsemblGenomes-Gn:azo2191,EnsemblGenomes-Tr:CAL94808,GOA:A1K7K3,InterPro:IPR004268,UniProtKB/TrEMBL:A1K7K3,NCBI_GP:CAL94808.1;Name=CAL94808.1;Note=TREMBL:Q82SD5:58%25 identity%2C 69%25 similarity The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins%2C first described in Salmonella [1]%2C and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules%2C and are part of an operon essential in at least one species subcellular location:integral membrane protein (potential). similarity:belongs to the mvin family Virulence factor mviN. InterPro:IPR004268%3B MVIN_like. Pfam:PF03023%3B MVIN (Virulence factor MVIN) InterPro: Virulence factor MVIN-like TMHMM predicted 13 transmembrane helices matE: MATE efflux family protein%3B~High confidence in function and specificity;gbkey=CDS;gene=mviN;product=probable virulence factor;protein_id=CAL94808.1;transl_table=11
AM406670.1	EMBL	gene	2398320	2398643	.	-	.	ID=gene2239;Name=azo2192;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2192
AM406670.1	EMBL	CDS	2398320	2398643	.	-	0	ID=cds2190;Parent=gene2239;Dbxref=EnsemblGenomes-Gn:azo2192,EnsemblGenomes-Tr:CAL94809,UniProtKB/TrEMBL:A1K7K4,NCBI_GP:CAL94809.1;Name=CAL94809.1;Note=Hypothetical protein%2C has very bad homology with hits in the database. TrEMBL%3BQ762H6. Has Signal Peptide.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94809.1;transl_table=11
AM406670.1	EMBL	gene	2398921	2400192	.	+	.	ID=gene2240;Name=azo2193;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2193
AM406670.1	EMBL	CDS	2398921	2400192	.	+	0	ID=cds2191;Parent=gene2240;Dbxref=EnsemblGenomes-Gn:azo2193,EnsemblGenomes-Tr:CAL94810,GOA:A1K7K5,InterPro:IPR000277,InterPro:IPR006235,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K7K5,NCBI_GP:CAL94810.1;Name=CAL94810.1;Note=Probable O-acetylhomoserine aminocarboxypropyltransferase. Homology to cysD of A. nidulans of 51%25 (sprot|CYSD_EMENI). Transforms O-acetylhomoserine into homocysteine. Pfam: Cys/Met metabolism PLP-dependent enzyme no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;product=probable O-acetylhomoserine aminocarboxypropyltransferase;protein_id=CAL94810.1;transl_table=11
AM406670.1	EMBL	gene	2400229	2403828	.	-	.	ID=gene2241;Name=azo2194;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2194
AM406670.1	EMBL	CDS	2400229	2403828	.	-	0	ID=cds2192;Parent=gene2241;Dbxref=EnsemblGenomes-Gn:azo2194,EnsemblGenomes-Tr:CAL94811,InterPro:IPR008023,UniProtKB/TrEMBL:A1K7K6,NCBI_GP:CAL94811.1;Name=CAL94811.1;Note=Conserved hypothetical membrane protein. Homology to rs04519 of R. solanacearum of 33%25 (trembl|Q8Y0Z7(SRS)). no domains predicted. no signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94811.1;transl_table=11
AM406670.1	EMBL	gene	2403971	2405179	.	+	.	ID=gene2242;Name=azo2195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2195
AM406670.1	EMBL	CDS	2403971	2405179	.	+	0	ID=cds2193;Parent=gene2242;Dbxref=EnsemblGenomes-Gn:azo2195,EnsemblGenomes-Tr:CAL94812,GOA:A1K7K7,InterPro:IPR004792,InterPro:IPR013027,InterPro:IPR023166,UniProtKB/TrEMBL:A1K7K7,NCBI_GP:CAL94812.1;Name=CAL94812.1;Note=Hypothetical protein yhiN. FAD flavoproteins belong to the family of pyridine nucleotide-disulphide oxidoreductases TREMBL:Q7MBF1: 58%25 identity%2C 69%25 similarity InterPro: IPR001327%3B FAD_pyr_redox. IPR004792%3B HI0933_like. IPR000205%3B NAD_BS. IPR001100%3B Pyr_redox InterPro: HI0933-like protein Pfam:PF03486%3B HI0933_like%3B 1. TIGR00275: conserved hypothetical pro Non-secretory protein with signal peptide probability of 0.464 Absence of transmembrane helices (TMHMM predicted)%3B~Specificity unclear;gbkey=CDS;product=probable flavoprotein;protein_id=CAL94812.1;transl_table=11
AM406670.1	EMBL	gene	2405255	2406064	.	+	.	ID=gene2243;Name=azo2196;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2196
AM406670.1	EMBL	CDS	2405255	2406064	.	+	0	ID=cds2194;Parent=gene2243;Dbxref=EnsemblGenomes-Gn:azo2196,EnsemblGenomes-Tr:CAL94813,GOA:A1K7K8,InterPro:IPR024654,InterPro:IPR029052,UniProtKB/TrEMBL:A1K7K8,NCBI_GP:CAL94813.1;Name=CAL94813.1;Note=Metallo-phosphoesterase%2C 50%25 identity(67%25 similarity) to TrEMBL%3BQ6N2S9 . TrEMBL%3BQ885N2(53%25 identity). Has PF00149%2C Calcineurin-like phosphoesterase%3BIPR004843%2CM-pesterase:This family includes a diverse range of phosphoesterases%2C including protein phosphoserine phosphatases%2C nucleotidases%2C sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD P13457 or yeast MRE11 P32829. The most conserved regions in this superfamily centre around the metal chelating residues. The metallo-phosphoesterase motif is found in a large number of proteins invoved in phosphoryation. These include serine/threonine phosphatases%2C DNA polymerase%2Cexonucleases%2C and other phosphatases. No Signal Peptide or TMH present.%3B~Specificity unclear;gbkey=CDS;product=Metallo-phosphoesterase protein;protein_id=CAL94813.1;transl_table=11
AM406670.1	EMBL	gene	2406216	2406671	.	+	.	ID=gene2244;Name=bcp2;gbkey=Gene;gene=bcp2;gene_biotype=protein_coding;locus_tag=azo2197
AM406670.1	EMBL	CDS	2406216	2406671	.	+	0	ID=cds2195;Parent=gene2244;Dbxref=EnsemblGenomes-Gn:azo2197,EnsemblGenomes-Tr:CAL94814,GOA:A1K7K9,InterPro:IPR000866,InterPro:IPR012336,InterPro:IPR024706,UniProtKB/TrEMBL:A1K7K9,NCBI_GP:CAL94814.1;Name=CAL94814.1;Note=Putative bacterioferritin comigratory protein. Homology to bcp of E. coli of 37%25 (sprot|BCP_ECOLI) InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (IPR000866) Pfam: AhpC/TSA family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=bcp2;product=putative bacterioferritin comigratory protein;protein_id=CAL94814.1;transl_table=11
AM406670.1	EMBL	gene	2406695	2408152	.	+	.	ID=gene2245;Name=azo2198;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2198
AM406670.1	EMBL	CDS	2406695	2408152	.	+	0	ID=cds2196;Parent=gene2245;Dbxref=EnsemblGenomes-Gn:azo2198,EnsemblGenomes-Tr:CAL94815,GOA:A1K7L0,InterPro:IPR002716,InterPro:IPR003714,InterPro:IPR027417,InterPro:IPR029060,UniProtKB/TrEMBL:A1K7L0,NCBI_GP:CAL94815.1;Name=CAL94815.1;Note=Putative PhoH-related protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative PhoH-related protein;protein_id=CAL94815.1;transl_table=11
AM406670.1	EMBL	gene	2408503	2410050	.	+	.	ID=gene2246;Name=aer;gbkey=Gene;gene=aer;gene_biotype=protein_coding;locus_tag=azo2199
AM406670.1	EMBL	CDS	2408503	2410050	.	+	0	ID=cds2197;Parent=gene2246;Dbxref=EnsemblGenomes-Gn:azo2199,EnsemblGenomes-Tr:CAL94816,GOA:A1K7L1,InterPro:IPR000014,InterPro:IPR001610,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,UniProtKB/TrEMBL:A1K7L1,NCBI_GP:CAL94816.1;Name=CAL94816.1;Note=Probable aerotaxis receptor protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=aer;product=probable aerotaxis receptor;protein_id=CAL94816.1;transl_table=11
AM406670.1	EMBL	gene	2410091	2411239	.	+	.	ID=gene2247;Name=azo2200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2200
AM406670.1	EMBL	CDS	2410091	2411239	.	+	0	ID=cds2198;Parent=gene2247;Dbxref=EnsemblGenomes-Gn:azo2200,EnsemblGenomes-Tr:CAL94817,InterPro:IPR003018,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR029016,UniProtKB/TrEMBL:A1K7L2,NCBI_GP:CAL94817.1;Name=CAL94817.1;Note=HD-domain containing protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=HD-domain containing protein;protein_id=CAL94817.1;transl_table=11
AM406670.1	EMBL	gene	2411332	2413230	.	+	.	ID=gene2248;Name=azo2201;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2201
AM406670.1	EMBL	CDS	2411332	2413230	.	+	0	ID=cds2199;Parent=gene2248;Dbxref=EnsemblGenomes-Gn:azo2201,EnsemblGenomes-Tr:CAL94818,GOA:A1K7L3,InterPro:IPR000595,InterPro:IPR000644,InterPro:IPR005105,InterPro:IPR014710,InterPro:IPR018490,InterPro:IPR018821,UniProtKB/TrEMBL:A1K7L3,NCBI_GP:CAL94818.1;Name=CAL94818.1;Note=Putative nucleotidyltransferase%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative nucleotidyltransferase;protein_id=CAL94818.1;transl_table=11
AM406670.1	EMBL	gene	2413227	2413871	.	+	.	ID=gene2249;Name=azo2202;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2202
AM406670.1	EMBL	CDS	2413227	2413871	.	+	0	ID=cds2200;Parent=gene2249;Dbxref=EnsemblGenomes-Gn:azo2202,EnsemblGenomes-Tr:CAL94819,GOA:A1K7L4,InterPro:IPR012337,UniProtKB/TrEMBL:A1K7L4,NCBI_GP:CAL94819.1;Name=CAL94819.1;Note=Probable DNA polymerase III%2C epsilon subunit%2C23%25 Identity to TrEMBL%3BQ8KDK8. Has EXOIII%2CSMART%3BSM00479%3BIPR006054%2C DnaQ%3BThis family includes a variety of exonuclease proteins%2C such as ribonuclease T and the epsilon subunit of DNA polymerase III. Ribonuclease T is responsible for the end-turnover of tRNA%2Cand removes the terminal AMP residue from uncharged tRNA. DNA polymerase III is a complex%2C multichain enzyme responsible for most of the replicative synthesis in bacteria%2C and also exhibits 3' to 5' exonuclease activity.;gbkey=CDS;product=DNA-directed DNA polymerase;protein_id=CAL94819.1;transl_table=11
AM406670.1	EMBL	gene	2413954	2414493	.	+	.	ID=gene2250;Name=azo2203;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2203
AM406670.1	EMBL	CDS	2413954	2414493	.	+	0	ID=cds2201;Parent=gene2250;Dbxref=EnsemblGenomes-Gn:azo2203,EnsemblGenomes-Tr:CAL94820,InterPro:IPR000064,UniProtKB/TrEMBL:A1K7L5,NCBI_GP:CAL94820.1;Name=CAL94820.1;Note=InterPro: NLP/P60%3B~Family membership;gbkey=CDS;product=putative lipoprotein precusor;protein_id=CAL94820.1;transl_table=11
AM406670.1	EMBL	gene	2414546	2414887	.	-	.	ID=gene2251;Name=azo2204;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2204
AM406670.1	EMBL	CDS	2414546	2414887	.	-	0	ID=cds2202;Parent=gene2251;Dbxref=EnsemblGenomes-Gn:azo2204,EnsemblGenomes-Tr:CAL94821,InterPro:IPR016772,UniProtKB/TrEMBL:A1K7L6,NCBI_GP:CAL94821.1;Name=CAL94821.1;Note=Conserved hypothetical protein. Homology to CV2970 of C.violaceum of 42%25 (trembl:Q7NTT3). No domains predicted. No TMHs. No signal peptide.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94821.1;transl_table=11
AM406670.1	EMBL	gene	2415014	2416036	.	+	.	ID=gene2252;Name=fbpA1;gbkey=Gene;gene=fbpA1;gene_biotype=protein_coding;locus_tag=azo2205
AM406670.1	EMBL	CDS	2415014	2416036	.	+	0	ID=cds2203;Parent=gene2252;Dbxref=EnsemblGenomes-Gn:azo2205,EnsemblGenomes-Tr:CAL94822,InterPro:IPR026045,UniProtKB/TrEMBL:A1K7L7,NCBI_GP:CAL94822.1;Name=CAL94822.1;Note=Iron (III)-transport system%2C substrate-binding protein FbpA. Part of the ABC transporter complex fbpABC (TC 3.A.1.10.1) involved in ferric cations import.Iron(III)periplasmic binding protein component.%3B~High confidence in function and specificity;gbkey=CDS;gene=fbpA1;product=putative iron transport system substrate-binding protein;protein_id=CAL94822.1;transl_table=11
AM406670.1	EMBL	gene	2416091	2417758	.	-	.	ID=gene2253;Name=fbpB1;gbkey=Gene;gene=fbpB1;gene_biotype=protein_coding;locus_tag=azo2206
AM406670.1	EMBL	CDS	2416091	2417758	.	-	0	ID=cds2204;Parent=gene2253;Dbxref=EnsemblGenomes-Gn:azo2206,EnsemblGenomes-Tr:CAL94823,GOA:A1K7L8,InterPro:IPR000515,UniProtKB/TrEMBL:A1K7L8,NCBI_GP:CAL94823.1;Name=CAL94823.1;Note=Iron(III)-transport system permease protein fbpB 2. Part of the ABC transporter complex fbpABC (TC 3.A.1.10.1) involved in ferric cations import. Probably responsible for the translocation of the substrate across the membrane (By similarity). pts-Glc: PTS system maltose and gluco%3B~High confidence in function and specificity;gbkey=CDS;gene=fbpB1;product=Iron (III) transport system%2C permease protein probable.;protein_id=CAL94823.1;transl_table=11
AM406670.1	EMBL	gene	2417875	2418999	.	+	.	ID=gene2254;Name=fbpC1;gbkey=Gene;gene=fbpC1;gene_biotype=protein_coding;locus_tag=azo2207
AM406670.1	EMBL	CDS	2417875	2418999	.	+	0	ID=cds2205;Parent=gene2254;Dbxref=EnsemblGenomes-Gn:azo2207,EnsemblGenomes-Tr:CAL94824,GOA:A1K7L9,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR013611,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7L9,NCBI_GP:CAL94824.1;Name=CAL94824.1;Note=Ferric cations import ATP-binding protein fbpC 2 (EC 3.6.3.30). Part of the ABC transporter complex fbpABC (TC 3.A.1.10.1) involved in ferric cations import. Responsible for energy coupling to the transport system (By similarity). InterPro: AAA ATPase superfamily apsK: adenylylsulfate kinase%3B~Specificity unclear;gbkey=CDS;gene=fbpC1;product=putative iron (III) transport system%2C ATP-binding protein;protein_id=CAL94824.1;transl_table=11
AM406670.1	EMBL	gene	2418999	2419706	.	+	.	ID=gene2255;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=azo2208
AM406670.1	EMBL	CDS	2418999	2419706	.	+	0	ID=cds2206;Parent=gene2255;Dbxref=EnsemblGenomes-Gn:azo2208,EnsemblGenomes-Tr:CAL94825,GOA:A1K7M0,InterPro:IPR004616,InterPro:IPR016181,NCBI_GP:CAL94825.1;Name=CAL94825.1;Note=Probable leucyl/phenylalanyl-tRNA--protein transferase. Homology to aat of E. coli of 50%25 (sprot|LFTR_ECOLI). Functions in the N-end rule pathway of protein degradation where it conjugates Leu Phe and less efficiently Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine (By similarity). InterPro: Leucyl/phenylalanyl-tRNA--protein transferase (IPR004616) Tigrfam: aat: leucyl/phenylalanyl-tRNA--protein transferase no signal peptide no TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=aat;product=probable leucyl/phenylalanyl-tRNA--protein transferase;protein_id=CAL94825.1;transl_table=11
AM406670.1	EMBL	gene	2419667	2420506	.	+	.	ID=gene2256;Name=ate;gbkey=Gene;gene=ate;gene_biotype=protein_coding;locus_tag=azo2209
AM406670.1	EMBL	CDS	2419667	2420506	.	+	0	ID=cds2207;Parent=gene2256;Dbxref=EnsemblGenomes-Gn:azo2209,EnsemblGenomes-Tr:CAL94826,GOA:A1K7M1,InterPro:IPR007471,InterPro:IPR007472,InterPro:IPR016181,InterPro:IPR017138,UniProtKB/TrEMBL:A1K7M1,NCBI_GP:CAL94826.1;Name=CAL94826.1;Note=Conserved hypothetical arginyl-tRNA--protein transferase. Homology to bp3443 of B. pertussis of 62%25 (sprot|ATE_BORPE). Functions in the N-end rule pathway of protein degradation where it conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate (Potential). no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;gene=ate;product=conserved hypothetical arginyl-tRNA--protein transferase;protein_id=CAL94826.1;transl_table=11
AM406670.1	EMBL	gene	2420577	2421593	.	+	.	ID=gene2257;Name=pyrD;gbkey=Gene;gene=pyrD;gene_biotype=protein_coding;locus_tag=azo2210
AM406670.1	EMBL	CDS	2420577	2421593	.	+	0	ID=cds2208;Parent=gene2257;Dbxref=EnsemblGenomes-Gn:azo2210,EnsemblGenomes-Tr:CAL94827,GOA:A1K7M2,InterPro:IPR001295,InterPro:IPR005719,InterPro:IPR012135,InterPro:IPR013785,NCBI_GP:CAL94827.1;Name=CAL94827.1;Note=Dihydroorotate oxidase) (Dihydroorotate dehydrogenase) (DHOdehase) (Dihydoorotic acid dehydrogenase)%3B~High confidence in function and specificity;gbkey=CDS;gene=pyrD;product=dihydroorotate oxidase;protein_id=CAL94827.1;transl_table=11
AM406670.1	EMBL	gene	2421804	2423330	.	+	.	ID=gene2258;Name=xdhA;gbkey=Gene;gene=xdhA;gene_biotype=protein_coding;locus_tag=azo2211
AM406670.1	EMBL	CDS	2421804	2423330	.	+	0	ID=cds2209;Parent=gene2258;Dbxref=EnsemblGenomes-Gn:azo2211,EnsemblGenomes-Tr:CAL94828,GOA:A1K7M3,InterPro:IPR001041,InterPro:IPR002346,InterPro:IPR002888,InterPro:IPR005107,InterPro:IPR006058,InterPro:IPR012175,InterPro:IPR012675,InterPro:IPR014307,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,UniProtKB/TrEMBL:A1K7M3,NCBI_GP:CAL94828.1;Name=CAL94828.1;Note=Xanthine dehydrogenase (subunit A) oxidoreductase protein%3B~High confidence in function and specificity;gbkey=CDS;gene=xdhA;product=xanthine dehydrogenase;protein_id=CAL94828.1;transl_table=11
AM406670.1	EMBL	gene	2423317	2425656	.	+	.	ID=gene2259;Name=xdhB;gbkey=Gene;gene=xdhB;gene_biotype=protein_coding;locus_tag=azo2212
AM406670.1	EMBL	CDS	2423317	2425656	.	+	0	ID=cds2210;Parent=gene2259;Dbxref=EnsemblGenomes-Gn:azo2212,EnsemblGenomes-Tr:CAL94829,GOA:A1K7M4,InterPro:IPR000674,InterPro:IPR008274,InterPro:IPR014309,UniProtKB/TrEMBL:A1K7M4,NCBI_GP:CAL94829.1;Name=CAL94829.1;Note=Xanthine dehydrogenase (subunit B) InterPro: Aldehyde oxidase and xanthine dehydrogenase C terminus%3B~High confidence in function and specificity;gbkey=CDS;gene=xdhB;product=xanthine dehydrogenase;protein_id=CAL94829.1;transl_table=11
AM406670.1	EMBL	gene	2425667	2426761	.	+	.	ID=gene2260;Name=xdhC;gbkey=Gene;gene=xdhC;gene_biotype=protein_coding;locus_tag=azo2213
AM406670.1	EMBL	CDS	2425667	2426761	.	+	0	ID=cds2211;Parent=gene2260;Dbxref=EnsemblGenomes-Gn:azo2213,EnsemblGenomes-Tr:CAL94830,InterPro:IPR003777,InterPro:IPR014308,InterPro:IPR027051,UniProtKB/TrEMBL:A1K7M5,NCBI_GP:CAL94830.1;Name=CAL94830.1;Note=xanthine dehydrogenase protein%2C probable (chaperone)%3B~High confidence in function and specificity;gbkey=CDS;gene=xdhC;product=putative xanthine dehydrogenase protein;protein_id=CAL94830.1;transl_table=11
AM406670.1	EMBL	gene	2426758	2428323	.	+	.	ID=gene2261;Name=azo2214;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2214
AM406670.1	EMBL	CDS	2426758	2428323	.	+	0	ID=cds2212;Parent=gene2261;Dbxref=EnsemblGenomes-Gn:azo2214,EnsemblGenomes-Tr:CAL94831,GOA:A1K7M6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7M6,NCBI_GP:CAL94831.1;Name=CAL94831.1;Note=Conserved hypothetical sugar transporter%2C ATP-binding protein. Homology to orf96 of P. sp strain ADP of 65%25 (TREMBL:Q936X7). PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR sugars. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. Pfam: AAA-ATPase%3B ABC transporter. no signal peptide. no TMHs%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical sugar transporter%2C ATP-binding domain;protein_id=CAL94831.1;transl_table=11
AM406670.1	EMBL	gene	2428310	2429374	.	+	.	ID=gene2262;Name=azo2215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2215
AM406670.1	EMBL	CDS	2428310	2429374	.	+	0	ID=cds2213;Parent=gene2262;Dbxref=EnsemblGenomes-Gn:azo2215,EnsemblGenomes-Tr:CAL94832,GOA:A1K7M7,InterPro:IPR001851,UniProtKB/TrEMBL:A1K7M7,NCBI_GP:CAL94832.1;Name=CAL94832.1;Note=Conserved hypothetical ABC transporter%2C permease protein. Homology to orf95 of Pseudomonas sp strain ADP of 57%25 (trembl|Q936X8). Bacterial binding protein-dependent transport systems are multicomponent systems typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. InterPro: Binding-system dependent bacterial transporters (araH livH/limM families) (IPR001851). Pfam: Branched-chain ammino acid transporter/permease component. no signal peptide. 9 TMHs%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical ABC transporter%2C permease protein;protein_id=CAL94832.1;transl_table=11
AM406670.1	EMBL	gene	2429377	2430309	.	+	.	ID=gene2263;Name=azo2216;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2216
AM406670.1	EMBL	CDS	2429377	2430309	.	+	0	ID=cds2214;Parent=gene2263;Dbxref=EnsemblGenomes-Gn:azo2216,EnsemblGenomes-Tr:CAL94833,GOA:A1K7M8,InterPro:IPR001851,UniProtKB/TrEMBL:A1K7M8,NCBI_GP:CAL94833.1;Name=CAL94833.1;Note=TREMBL:Q8XXD9: 46%25 identity%2C 59%25 similarity Hypothetical protein MG120 homolog (A65_orf517). Bacterial inner-membrane translocator.The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown [3%2C 4] that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity InterPro:IPR001851%3B Bac_inmem_transp. Pfam:PF02653%3B BPD_transp_2 gntP: gluconate transporter TMH's 9 (TMHMM predicted)%3B~Specificity unclear;gbkey=CDS;product=probable ABC transporter%2C permease protein;protein_id=CAL94833.1;transl_table=11
AM406670.1	EMBL	gene	2430582	2432618	.	+	.	ID=gene2264;Name=azo2217;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2217
AM406670.1	EMBL	CDS	2430582	2432618	.	+	0	ID=cds2215;Parent=gene2264;Dbxref=EnsemblGenomes-Gn:azo2217,EnsemblGenomes-Tr:CAL94834,GOA:A1K7M9,InterPro:IPR000531,InterPro:IPR010917,InterPro:IPR012910,UniProtKB/TrEMBL:A1K7M9,NCBI_GP:CAL94834.1;Name=CAL94834.1;Note=Similar to FecA%2C ferric-citrate outer membrane receptor in E.coli%2C involved in the recognition and internalization of ferric-citrate. InterPro: TonB-dependent receptor protein%3B~Function unclear;gbkey=CDS;product=putative TonB-dependent receptor;protein_id=CAL94834.1;transl_table=11
AM406670.1	EMBL	gene	2432622	2433353	.	+	.	ID=gene2265;Name=cbiK;gbkey=Gene;gene=cbiK;gene_biotype=protein_coding;locus_tag=azo2218
AM406670.1	EMBL	CDS	2432622	2433353	.	+	0	ID=cds2216;Parent=gene2265;Dbxref=EnsemblGenomes-Gn:azo2218,EnsemblGenomes-Tr:CAL94835,InterPro:IPR019613,UniProtKB/TrEMBL:A1K7N0,NCBI_GP:CAL94835.1;Name=CAL94835.1;Note=Part of the ABC transporter complex cbiKMQO involved in cobalt import. Similar to the putative periplasmic-binding protein CbiK precursor in A.pleuropneumoniae. thiE: thiamine-phosphate pyrophosphoryla%3B~High confidence in function and specificity;gbkey=CDS;gene=cbiK;product=putative cobalt transport system%2C periplasmic-binding protein;protein_id=CAL94835.1;transl_table=11
AM406670.1	EMBL	gene	2433350	2433829	.	+	.	ID=gene2266;Name=azo2219;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2219
AM406670.1	EMBL	CDS	2433350	2433829	.	+	0	ID=cds2217;Parent=gene2266;Dbxref=EnsemblGenomes-Gn:azo2219,EnsemblGenomes-Tr:CAL94836,UniProtKB/TrEMBL:A1K7N1,NCBI_GP:CAL94836.1;Name=CAL94836.1;Note=Conserved hypothetical membrane protein. Homology to cbiL of Actinobacillus pleuropneumoniae of 39%25 (gi|5733705|gb|AAD49725.1|(NBCI ENTREZ)). Signal P reproting signal peptide present. TMHMM reporting TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94836.1;transl_table=11
AM406670.1	EMBL	gene	2433832	2434458	.	+	.	ID=gene2267;Name=cbiM;gbkey=Gene;gene=cbiM;gene_biotype=protein_coding;locus_tag=azo2220
AM406670.1	EMBL	CDS	2433832	2434458	.	+	0	ID=cds2218;Parent=gene2267;Dbxref=EnsemblGenomes-Gn:azo2220,EnsemblGenomes-Tr:CAL94837,GOA:A1K7N2,InterPro:IPR002751,UniProtKB/TrEMBL:A1K7N2,NCBI_GP:CAL94837.1;Name=CAL94837.1;Note=Part of the ABC transporter complex cbiKMQO involved in cobalt import. Similar to the cobalt transport membrane protein%2C CbiM in A. pleuropneumoniae. InterPro: Cobalamin synthesis CBIM cbiM: cobalamin biosynthesis protein Cbi%3B~High confidence in function and specificity;gbkey=CDS;gene=cbiM;product=putative cobalt transport system%2C permease protein;protein_id=CAL94837.1;transl_table=11
AM406670.1	EMBL	gene	2434455	2435144	.	+	.	ID=gene2268;Name=cbiQ;gbkey=Gene;gene=cbiQ;gene_biotype=protein_coding;locus_tag=azo2221
AM406670.1	EMBL	CDS	2434455	2435144	.	+	0	ID=cds2219;Parent=gene2268;Dbxref=EnsemblGenomes-Gn:azo2221,EnsemblGenomes-Tr:CAL94838,InterPro:IPR003339,UniProtKB/TrEMBL:A1K7N3,NCBI_GP:CAL94838.1;Name=CAL94838.1;Note=Part of the ABC transporter complex cbiKMQO involved in cobalt import. Similar to the cobalt transport membrane protein%2C CbiQ in A. pleuropneumoniae.%3B~Function unclear;gbkey=CDS;gene=cbiQ;product=putative cobalt transport system permease protein;protein_id=CAL94838.1;transl_table=11
AM406670.1	EMBL	gene	2435203	2435838	.	+	.	ID=gene2269;Name=cbiO;gbkey=Gene;gene=cbiO;gene_biotype=protein_coding;locus_tag=azo2222
AM406670.1	EMBL	CDS	2435203	2435838	.	+	0	ID=cds2220;Parent=gene2269;Dbxref=EnsemblGenomes-Gn:azo2222,EnsemblGenomes-Tr:CAL94839,GOA:A1K7N4,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7N4,NCBI_GP:CAL94839.1;Name=CAL94839.1;Note=Part of the ABC transporter complex cbiKMQO involved in cobalt import. Probably responsible for the translocation of the substrate across the membrane. 40%25 AAA_ATPase.IPR003439%3B ABC_transporter. Pfam:PF00005%3B ABC_tran%3B 1. ProDom%3B PD000006%3B ABC_transporter%3B 1. SMART%3B SM00382%3B AAA%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=cbiO;product=putative cobalt transport system ATP-binding protein;protein_id=CAL94839.1;transl_table=11
AM406670.1	EMBL	gene	2435887	2437182	.	+	.	ID=gene2270;Name=guaD;gbkey=Gene;gene=guaD;gene_biotype=protein_coding;locus_tag=azo2223
AM406670.1	EMBL	CDS	2435887	2437182	.	+	0	ID=cds2221;Parent=gene2270;Dbxref=EnsemblGenomes-Gn:azo2223,EnsemblGenomes-Tr:CAL94840,GOA:A1K7N5,InterPro:IPR011059,InterPro:IPR013108,InterPro:IPR014311,UniProtKB/TrEMBL:A1K7N5,NCBI_GP:CAL94840.1;Name=CAL94840.1;Note=Guanine deaminase (Guanase) (Guanine aminase) (GAH)%3B~High confidence in function and specificity;gbkey=CDS;gene=guaD;product=guanine deaminase;protein_id=CAL94840.1;transl_table=11
AM406670.1	EMBL	gene	2437170	2437643	.	+	.	ID=gene2271;Name=yaiI;gbkey=Gene;gene=yaiI;gene_biotype=protein_coding;locus_tag=azo2224
AM406670.1	EMBL	CDS	2437170	2437643	.	+	0	ID=cds2222;Parent=gene2271;Dbxref=EnsemblGenomes-Gn:azo2224,EnsemblGenomes-Tr:CAL94841,InterPro:IPR003791,UniProtKB/TrEMBL:A1K7N6,NCBI_GP:CAL94841.1;Name=CAL94841.1;Note=Hypothetical protein yaiI%2C58%25 identical (75%25 similar) to SwissProt%3B P52088%2C of E.coli.SwissProt%3BQ8XEM1(61%25 identity) TrEMBL%3B Q8ED72. Has PF02639%2C Uncharacterized BCR%2C YaiI/YqxD family COG1671%3BIPR003791. No Signal peptide or TMH present.;gbkey=CDS;gene=yaiI;product=YaiI/YqxD family protein;protein_id=CAL94841.1;transl_table=11
AM406670.1	EMBL	gene	2437796	2439499	.	+	.	ID=gene2272;Name=azo2225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2225
AM406670.1	EMBL	CDS	2437796	2439499	.	+	0	ID=cds2223;Parent=gene2272;Dbxref=EnsemblGenomes-Gn:azo2225,EnsemblGenomes-Tr:CAL94842,GOA:A1K7N7,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR029787,UniProtKB/TrEMBL:A1K7N7,NCBI_GP:CAL94842.1;Name=CAL94842.1;Note=GGDEF/EAL/PAS-domain containing protein;gbkey=CDS;product=GGDEF/EAL/PAS-domain containing protein;protein_id=CAL94842.1;transl_table=11
AM406670.1	EMBL	gene	2439509	2440297	.	-	.	ID=gene2273;Name=azo2226;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2226
AM406670.1	EMBL	CDS	2439509	2440297	.	-	0	ID=cds2224;Parent=gene2273;Dbxref=EnsemblGenomes-Gn:azo2226,EnsemblGenomes-Tr:CAL94843,GOA:A1K7N8,InterPro:IPR002508,UniProtKB/TrEMBL:A1K7N8,NCBI_GP:CAL94843.1;Name=CAL94843.1;Note=Probable N-acetylmuramoyl-L-alanine amidase amiA precursor%2C 28%25 identity to TrEMBL%3BQ823N1. 26%25 identity to SwissProt%3BP36548 Has SMART%3BSM00646%2C Ami_3. Signal Peptide present. Has PF01520%3B N-acetylmuramoyl-L-alanine amidase %3BIPR002508 Amidase_3_hydro%3B This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls.;gbkey=CDS;product=N-acetylmuramoyl-L-alanine amidase;protein_id=CAL94843.1;transl_table=11
AM406670.1	EMBL	gene	2440284	2442953	.	-	.	ID=gene2274;Name=azo2227;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2227
AM406670.1	EMBL	CDS	2440284	2442953	.	-	0	ID=cds2225;Parent=gene2274;Dbxref=EnsemblGenomes-Gn:azo2227,EnsemblGenomes-Tr:CAL94844,GOA:A1K7N9,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR013656,InterPro:IPR029787,UniProtKB/TrEMBL:A1K7N9,NCBI_GP:CAL94844.1;Name=CAL94844.1;Note=GGDEF/EAL/PAS-domain containing protein;gbkey=CDS;product=GGDEF/EAL/PAS-domain containing protein;protein_id=CAL94844.1;transl_table=11
AM406670.1	EMBL	gene	2442950	2443813	.	-	.	ID=gene2275;Name=azo2228;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2228
AM406670.1	EMBL	CDS	2442950	2443813	.	-	0	ID=cds2226;Parent=gene2275;Dbxref=EnsemblGenomes-Gn:azo2228,EnsemblGenomes-Tr:CAL94845,GOA:A1K7P0,InterPro:IPR001638,UniProtKB/TrEMBL:A1K7P0,NCBI_GP:CAL94845.1;Name=CAL94845.1;Note=Conserved hypothetical amino acid-binding protein. Homology to bb2160 of B. bronchiseptica of 39%25 (trembl|Q7WKE7). PROBABLY PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR AN AMINO ACID. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR001311). Pfam: Bacterial extracellular solute-binding protein. Signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical amino acid-binding protein;protein_id=CAL94845.1;transl_table=11
AM406670.1	EMBL	gene	2443996	2444244	.	+	.	ID=gene2276;Name=azo2229;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2229
AM406670.1	EMBL	CDS	2443996	2444244	.	+	0	ID=cds2227;Parent=gene2276;Dbxref=EnsemblGenomes-Gn:azo2229,EnsemblGenomes-Tr:CAL94846,UniProtKB/TrEMBL:A1K7P1,NCBI_GP:CAL94846.1;Name=CAL94846.1;Note=Conserved hypothetical secreted protein. Homology to PSPTO5169 of P.syringae 45%25 (tremble:Q87UX3). No domains predicted. Signal P reporting Signal Peptide present. No TMH being reported as present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94846.1;transl_table=11
AM406670.1	EMBL	gene	2444384	2444647	.	+	.	ID=gene2277;Name=azo2230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2230
AM406670.1	EMBL	CDS	2444384	2444647	.	+	0	ID=cds2228;Parent=gene2277;Dbxref=EnsemblGenomes-Gn:azo2230,EnsemblGenomes-Tr:CAL94847,UniProtKB/TrEMBL:A1K7P2,NCBI_GP:CAL94847.1;Name=CAL94847.1;Note=Conserved hypothetical membrane protein. Homology to pp2721 of P. putida of 56%25 (trembl|Q88JC8(SRS). no domains predicted. no signal peptide. 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94847.1;transl_table=11
AM406670.1	EMBL	gene	2444681	2445784	.	-	.	ID=gene2278;Name=azo2231;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2231
AM406670.1	EMBL	CDS	2444681	2445784	.	-	0	ID=cds2229;Parent=gene2278;Dbxref=EnsemblGenomes-Gn:azo2231,EnsemblGenomes-Tr:CAL94848,GOA:A1K7P3,InterPro:IPR001451,InterPro:IPR005835,InterPro:IPR011004,InterPro:IPR029044,UniProtKB/TrEMBL:A1K7P3,NCBI_GP:CAL94848.1;Name=CAL94848.1;Note=Mannose-1-phosphate guanyltransferase involved in the reaction:GTP + alpha-D-mannose 1-phosphate %3D diphosphate + GDPmannose. 51%25 Hexapep_transf.IPR005835%3B NTP_transferase. Pfam:PF00132%3B Hexapep%3B 2.PF00483%3B NTP_transferase%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;product=putative Mannose-1-phosphate guanylyltransferase;protein_id=CAL94848.1;transl_table=11
AM406670.1	EMBL	gene	2445816	2447138	.	-	.	ID=gene2279;Name=udgH;gbkey=Gene;gene=udgH;gene_biotype=protein_coding;locus_tag=azo2232
AM406670.1	EMBL	CDS	2445816	2447138	.	-	0	ID=cds2230;Parent=gene2279;Dbxref=EnsemblGenomes-Gn:azo2232,EnsemblGenomes-Tr:CAL94849,GOA:A1K7P4,InterPro:IPR001732,InterPro:IPR008927,InterPro:IPR014026,InterPro:IPR014027,InterPro:IPR016040,InterPro:IPR017476,InterPro:IPR028357,UniProtKB/TrEMBL:A1K7P4,NCBI_GP:CAL94849.1;Name=CAL94849.1;Note=61%25 UDPG_MGDP_dh. Pfam:PF00984%3B UDPG_MGDP_dh%3B 1.PF03720%3B UDPG_MGDP_dh_C%3B 1.PF03721%3B UDPG_MGDP_dh_N%3B 1. Signal peptide: present.%3B~High confidence in function and specificity;gbkey=CDS;gene=udgH;product=putative UDP-glucose 6-dehydrogenase;protein_id=CAL94849.1;transl_table=11
AM406670.1	EMBL	gene	2447180	2447938	.	-	.	ID=gene2280;Name=gumM;gbkey=Gene;gene=gumM;gene_biotype=protein_coding;locus_tag=azo2233
AM406670.1	EMBL	CDS	2447180	2447938	.	-	0	ID=cds2231;Parent=gene2280;Dbxref=EnsemblGenomes-Gn:azo2233,EnsemblGenomes-Tr:CAL94850,GOA:A1K7P5,InterPro:IPR004629,UniProtKB/TrEMBL:A1K7P5,NCBI_GP:CAL94850.1;Name=CAL94850.1;Note=60%25 WecB_TagA_CpsF. Pfam:PF03808%3B Glyco_tran_WecB%3B 1. TIGRFAMs:TIGR00696%3B wecB_tagA_cpsF%3B 1. Non-secretory protein.%3B~High confidence in function and specificity;gbkey=CDS;gene=gumM;product=putative glycosyltransferase;protein_id=CAL94850.1;transl_table=11
AM406670.1	EMBL	gene	2447961	2449433	.	-	.	ID=gene2281;Name=gumJ;gbkey=Gene;gene=gumJ;gene_biotype=protein_coding;locus_tag=azo2234
AM406670.1	EMBL	CDS	2447961	2449433	.	-	0	ID=cds2232;Parent=gene2281;Dbxref=EnsemblGenomes-Gn:azo2234,EnsemblGenomes-Tr:CAL94851,GOA:A1K7P6,InterPro:IPR002797,UniProtKB/TrEMBL:A1K7P6,NCBI_GP:CAL94851.1;Name=CAL94851.1;Note=25%25 Polysacc_synt. Pfam:PF01943%3B Polysacc_synt%3B 1. TMhelix:14. Non-secretory protein.%3B~Family membership;gbkey=CDS;gene=gumJ;product=putative polysaccharide translocase;protein_id=CAL94851.1;transl_table=11
AM406670.1	EMBL	gene	2449543	2450694	.	-	.	ID=gene2282;Name=gumK;gbkey=Gene;gene=gumK;gene_biotype=protein_coding;locus_tag=azo2235
AM406670.1	EMBL	CDS	2449543	2450694	.	-	0	ID=cds2233;Parent=gene2282;Dbxref=EnsemblGenomes-Gn:azo2235,EnsemblGenomes-Tr:CAL94852,GOA:A1K7P7,UniProtKB/TrEMBL:A1K7P7,NCBI_GP:CAL94852.1;Name=CAL94852.1;Note=64%25%3B~High confidence in function and specificity;gbkey=CDS;gene=gumK;product=putative glucuronyl transferase;protein_id=CAL94852.1;transl_table=11
AM406670.1	EMBL	gene	2450726	2451748	.	-	.	ID=gene2283;Name=eglA;gbkey=Gene;gene=eglA;gene_biotype=protein_coding;locus_tag=azo2236
AM406670.1	EMBL	CDS	2450726	2451748	.	-	0	ID=cds2234;Parent=gene2283;Dbxref=EnsemblGenomes-Gn:azo2236,EnsemblGenomes-Tr:CAL94853,GOA:A0S6A6,InterPro:IPR001547,InterPro:IPR013781,InterPro:IPR017853,InterPro:IPR018087,UniProtKB/TrEMBL:A0S6A6,NCBI_GP:CAL94853.1;Name=CAL94853.1;Note=41%25 Glyco_hydro_5. Pfam:PF00150%3B Cellulase%3B 1. Signal peptide: present.%3B~High confidence in function and specificity;gbkey=CDS;gene=eglA;product=putative endoglucanase precursor;protein_id=CAL94853.1;transl_table=11
AM406670.1	EMBL	gene	2451745	2452860	.	-	.	ID=gene2284;Name=gumH;gbkey=Gene;gene=gumH;gene_biotype=protein_coding;locus_tag=azo2237
AM406670.1	EMBL	CDS	2451745	2452860	.	-	0	ID=cds2235;Parent=gene2284;Dbxref=EnsemblGenomes-Gn:azo2237,EnsemblGenomes-Tr:CAL94854,GOA:A1K7P9,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:A1K7P9,NCBI_GP:CAL94854.1;Name=CAL94854.1;Note=60%25 Glyco_trans_1. Pfam:PF00534%3B Glycos_transf_1%3B 1.%3B~Specificity unclear;gbkey=CDS;gene=gumH;product=putative glycosyltransferase;protein_id=CAL94854.1;transl_table=11
AM406670.1	EMBL	gene	2452857	2454176	.	-	.	ID=gene2285;Name=gumE;gbkey=Gene;gene=gumE;gene_biotype=protein_coding;locus_tag=azo2238
AM406670.1	EMBL	CDS	2452857	2454176	.	-	0	ID=cds2236;Parent=gene2285;Dbxref=EnsemblGenomes-Gn:azo2238,EnsemblGenomes-Tr:CAL94855,UniProtKB/TrEMBL:A1K7Q0,NCBI_GP:CAL94855.1;Name=CAL94855.1;Note=26%25%3B~Family membership;gbkey=CDS;gene=gumE;product=putative surface polysaccharide polymerase;protein_id=CAL94855.1;transl_table=11
AM406670.1	EMBL	gene	2454178	2455266	.	-	.	ID=gene2286;Name=gumF;gbkey=Gene;gene=gumF;gene_biotype=protein_coding;locus_tag=azo2239
AM406670.1	EMBL	CDS	2454178	2455266	.	-	0	ID=cds2237;Parent=gene2286;Dbxref=EnsemblGenomes-Gn:azo2239,EnsemblGenomes-Tr:CAL94856,GOA:A1K7Q1,InterPro:IPR002656,UniProtKB/TrEMBL:A1K7Q1,NCBI_GP:CAL94856.1;Name=CAL94856.1;Note=44%25 Acyl_transf_3. Pfam:PF01757%3B Acyl_transf_3%3B 1. TMhelix:9. Non-secretory protein.%3B~High confidence in function and specificity;gbkey=CDS;gene=gumF;product=putative acetyltransferase;protein_id=CAL94856.1;transl_table=11
AM406670.1	EMBL	gene	2455235	2456101	.	-	.	ID=gene2287;Name=wzc1;gbkey=Gene;gene=wzc1;gene_biotype=protein_coding;locus_tag=azo2240
AM406670.1	EMBL	CDS	2455235	2456101	.	-	0	ID=cds2238;Parent=gene2287;Dbxref=EnsemblGenomes-Gn:azo2240,EnsemblGenomes-Tr:CAL94857,GOA:A1K7Q2,InterPro:IPR005702,InterPro:IPR017479,InterPro:IPR025669,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7Q2,NCBI_GP:CAL94857.1;Name=CAL94857.1;Note=Tyrosine-protein kinase wzc (EC 2.7.10.1). Required for the extracellular polysaccharide colanic acid synthesis. The autophosphorylated form is inactive. Probably involved in the export of colanic acid from the cell to medium (By similarity). gidA: glucose-inhibited division prot%3B~High confidence in function and specificity;gbkey=CDS;gene=wzc1;product=tyrosine-protein kinase;protein_id=CAL94857.1;transl_table=11
AM406670.1	EMBL	gene	2456144	2457553	.	-	.	ID=gene2288;Name=gumC;gbkey=Gene;gene=gumC;gene_biotype=protein_coding;locus_tag=azo2241
AM406670.1	EMBL	CDS	2456144	2457553	.	-	0	ID=cds2239;Parent=gene2288;Dbxref=EnsemblGenomes-Gn:azo2241,EnsemblGenomes-Tr:CAL94858,GOA:A1K7Q3,InterPro:IPR003856,InterPro:IPR017468,UniProtKB/TrEMBL:A1K7Q3,NCBI_GP:CAL94858.1;Name=CAL94858.1;Note=21%25 LPS_Wzz_MPA. Pfam:PF02706%3B Wzz%3B 1. TMhelix:1. Signal peptide:present.%3B~High confidence in function and specificity;gbkey=CDS;gene=gumC;product=putative exopolysaccharide biosynthesis protein;protein_id=CAL94858.1;transl_table=11
AM406670.1	EMBL	gene	2457567	2458376	.	-	.	ID=gene2289;Name=gumB;gbkey=Gene;gene=gumB;gene_biotype=protein_coding;locus_tag=azo2242
AM406670.1	EMBL	CDS	2457567	2458376	.	-	0	ID=cds2240;Parent=gene2289;Dbxref=EnsemblGenomes-Gn:azo2242,EnsemblGenomes-Tr:CAL94859,GOA:A1K7Q4,InterPro:IPR003715,InterPro:IPR017478,InterPro:IPR019554,UniProtKB/TrEMBL:A1K7Q4,NCBI_GP:CAL94859.1;Name=CAL94859.1;Note=Putative capsule polysaccharide export protein precursor.May be involved in polysaccharide polymerization or transport. 36%25 Poly_export. Pfam:PF02563%3B Poly_export%3B 1. Signal peptide: present.%3B~Family membership;gbkey=CDS;gene=gumB;product=putative polysaccharide export protein;protein_id=CAL94859.1;transl_table=11
AM406670.1	EMBL	gene	2458429	2459328	.	-	.	ID=gene2290;Name=azo2243;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2243
AM406670.1	EMBL	CDS	2458429	2459328	.	-	0	ID=cds2241;Parent=gene2290;Dbxref=EnsemblGenomes-Gn:azo2243,EnsemblGenomes-Tr:CAL94860,GOA:A1K7Q5,InterPro:IPR000297,InterPro:IPR014274,InterPro:IPR027304,UniProtKB/TrEMBL:A1K7Q5,NCBI_GP:CAL94860.1;Name=CAL94860.1;Note=Conserved hypothetical secreted protein. Homology to TdenA01000001 of Thiobacillus denitrificans of 33%25 (gi|52007706|ref|ZP_00335083.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94860.1;transl_table=11
AM406670.1	EMBL	gene	2459330	2459746	.	-	.	ID=gene2291;Name=azo2244;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2244
AM406670.1	EMBL	CDS	2459330	2459746	.	-	0	ID=cds2242;Parent=gene2291;Dbxref=EnsemblGenomes-Gn:azo2244,EnsemblGenomes-Tr:CAL94861,UniProtKB/TrEMBL:A1K7Q6,NCBI_GP:CAL94861.1;Name=CAL94861.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains pedicted. No TMHs signal peptide;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94861.1;transl_table=11
AM406670.1	EMBL	gene	2459794	2460981	.	-	.	ID=gene2292;Name=azo2245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2245
AM406670.1	EMBL	CDS	2459794	2460981	.	-	0	ID=cds2243;Parent=gene2292;Dbxref=EnsemblGenomes-Gn:azo2245,EnsemblGenomes-Tr:CAL94862,InterPro:IPR018759,UniProtKB/TrEMBL:A1K7Q7,NCBI_GP:CAL94862.1;Name=CAL94862.1;Note=Hypothetical secreted protein. No good homology to the data bank. No domains predicted. No TMHs. Signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94862.1;transl_table=11
AM406670.1	EMBL	gene	2461174	2462565	.	+	.	ID=gene2293;Name=gumD;gbkey=Gene;gene=gumD;gene_biotype=protein_coding;locus_tag=azo2246
AM406670.1	EMBL	CDS	2461174	2462565	.	+	0	ID=cds2244;Parent=gene2293;Dbxref=EnsemblGenomes-Gn:azo2246,EnsemblGenomes-Tr:CAL94863,GOA:A1K7Q8,InterPro:IPR003362,InterPro:IPR017473,InterPro:IPR017475,UniProtKB/TrEMBL:A1K7Q8,NCBI_GP:CAL94863.1;Name=CAL94863.1;Note=43%25 Bact_transf. Pfam:PF02397%3B Bac_transf%3B 1. TMhelix:5.%3B~Specificity unclear;gbkey=CDS;gene=gumD;product=putative glycosyltransferase;protein_id=CAL94863.1;transl_table=11
AM406670.1	EMBL	gene	2462824	2464230	.	+	.	ID=gene2294;Name=azo2247;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2247
AM406670.1	EMBL	CDS	2462824	2464230	.	+	0	ID=cds2245;Parent=gene2294;Dbxref=EnsemblGenomes-Gn:azo2247,EnsemblGenomes-Tr:CAL94864,UniProtKB/TrEMBL:A1K7Q9,NCBI_GP:CAL94864.1;Name=CAL94864.1;Note=Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94864.1;transl_table=11
AM406670.1	EMBL	gene	2464264	2464395	.	-	.	ID=gene2295;Name=azo2248;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2248
AM406670.1	EMBL	CDS	2464264	2464395	.	-	0	ID=cds2246;Parent=gene2295;Dbxref=EnsemblGenomes-Gn:azo2248,EnsemblGenomes-Tr:CAL94865,UniProtKB/TrEMBL:A1K7R0,NCBI_GP:CAL94865.1;Name=CAL94865.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL94865.1;transl_table=11
AM406670.1	EMBL	gene	2464506	2465156	.	+	.	ID=gene2296;Name=azo2249;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2249
AM406670.1	EMBL	CDS	2464506	2465156	.	+	0	ID=cds2247;Parent=gene2296;Dbxref=EnsemblGenomes-Gn:azo2249,EnsemblGenomes-Tr:CAL94866,GOA:A1K7R1,InterPro:IPR005122,InterPro:IPR005273,UniProtKB/TrEMBL:A1K7R1,NCBI_GP:CAL94866.1;Name=CAL94866.1;Note=Region start changed from 2464498 to 2464507 (-9 bases);gbkey=CDS;product=putative DNA polymerase related protein;protein_id=CAL94866.1;transl_table=11
AM406670.1	EMBL	gene	2465256	2466758	.	-	.	ID=gene2297;Name=thmS1;gbkey=Gene;gene=thmS1;gene_biotype=protein_coding;locus_tag=azo2250
AM406670.1	EMBL	CDS	2465256	2466758	.	-	0	ID=cds2248;Parent=gene2297;Dbxref=EnsemblGenomes-Gn:azo2250,EnsemblGenomes-Tr:CAL94867,GOA:A1K7R2,InterPro:IPR015590,InterPro:IPR015657,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR029510,UniProtKB/TrEMBL:A1K7R2,NCBI_GP:CAL94867.1;Name=CAL94867.1;Note=probable succinate semialdehyde dehydrogenase [NAD(P)+). Homology to thmS of Pseudonocardia sp. K1 of 55%25 (trembl|Q9F3V7). Is capable of oxidizing substrates using NADP as cofactor. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=thmS1;product=probable succinate semialdehyde dehydrogenase [NAD(P)+];protein_id=CAL94867.1;transl_table=11
AM406670.1	EMBL	gene	2467221	2467694	.	-	.	ID=gene2298;Name=azo2251;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2251
AM406670.1	EMBL	CDS	2467221	2467694	.	-	0	ID=cds2249;Parent=gene2298;Dbxref=EnsemblGenomes-Gn:azo2251,EnsemblGenomes-Tr:CAL94868,InterPro:IPR007791,InterPro:IPR029024,UniProtKB/TrEMBL:A1K7R3,NCBI_GP:CAL94868.1;Name=CAL94868.1;Note=Hypothetical protein%2C 30%25 identiy(50%25 similarity) to TrEMBL%3BQ8FYJ1. TrEMBL%3BQ8YJA6. Has (IPR010755)PF07049%2CProtein of unknown function (DUF1332)%3BThis family consists of several hypothetical bacterial proteins of around 165 residues in length. The function of this family is unknown. No Signal peptide or TMH present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94868.1;transl_table=11
AM406670.1	EMBL	gene	2467705	2468685	.	-	.	ID=gene2299;Name=azo2252;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2252
AM406670.1	EMBL	CDS	2467705	2468685	.	-	0	ID=cds2250;Parent=gene2299;Dbxref=EnsemblGenomes-Gn:azo2252,EnsemblGenomes-Tr:CAL94869,InterPro:IPR028203,UniProtKB/TrEMBL:A1K7R4,NCBI_GP:CAL94869.1;Name=CAL94869.1;Note=Conserved hypothetical BNR domain protein. Homology to pa3080 of P. aeruginosa of 38%25 (trembl|Q9HZC8). InterPro: BNR repeat (IPR002860). Pfam: BNR repeat. BNR repeats are short repeats never found closer than 40 residues together%2C which suggests that the repeat is structurally longer. These repeats are found in many glycosyl hydrolases as well as other extracellular proteins of unknown function. singal peptide. no TMHs%3B~Function unclear;gbkey=CDS;product=conserved hypothetical BNR domain protein;protein_id=CAL94869.1;transl_table=11
AM406670.1	EMBL	gene	2468697	2471060	.	-	.	ID=gene2300;Name=azo2253;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2253
AM406670.1	EMBL	CDS	2468697	2471060	.	-	0	ID=cds2251;Parent=gene2300;Dbxref=EnsemblGenomes-Gn:azo2253,EnsemblGenomes-Tr:CAL94870,GOA:A1K7R5,InterPro:IPR000731,InterPro:IPR001036,InterPro:IPR004869,UniProtKB/TrEMBL:A1K7R5,NCBI_GP:CAL94870.1;Name=CAL94870.1;Note=Putative membrane protein MJ1562. TREMBL:Q88J37: 52%25 identity%2C 66%25 similarity InterPro:IPR001036%3B Acrflvin_res. IPR000731%3B SSD_5TM Pfam:Patched:Patched family 2A067: efflux transporter putative Presence of signal peptide (Signal P predicted). Transmembrane helices 12 (TMHMM predicted)%3B~Family membership;gbkey=CDS;product=probable exporter of RND superfamily;protein_id=CAL94870.1;transl_table=11
AM406670.1	EMBL	gene	2471191	2472987	.	-	.	ID=gene2301;Name=azo2254;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2254
AM406670.1	EMBL	CDS	2471191	2472987	.	-	0	ID=cds2252;Parent=gene2301;Dbxref=EnsemblGenomes-Gn:azo2254,EnsemblGenomes-Tr:CAL94871,InterPro:IPR010727,UniProtKB/TrEMBL:A1K7R6,NCBI_GP:CAL94871.1;Name=CAL94871.1;Note=Conserved hypothetical secreted protein. Homology to PP2811 of P.putida of 32%25 (tremble:Q88J38). Has PF06980%3BProtein of unknown function (DUF1302)domain%3BIPR010727 This family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas. Signal peptide present. No TMH reported.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94871.1;transl_table=11
AM406670.1	EMBL	gene	2473019	2474398	.	-	.	ID=gene2302;Name=azo2255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2255
AM406670.1	EMBL	CDS	2473019	2474398	.	-	0	ID=cds2253;Parent=gene2302;Dbxref=EnsemblGenomes-Gn:azo2255,EnsemblGenomes-Tr:CAL94872,InterPro:IPR010752,UniProtKB/TrEMBL:A1K7R7,NCBI_GP:CAL94872.1;Name=CAL94872.1;Note=Conserved hypothetical secreted protein. Homology to PA3081 of P.aeruginosa of 43%25 (trembl:Q9HZC7). Has pfam07044%2C DUF1329%2C Protein of unknown function (DUF1329). IPR010752%3B This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica. Signal Peptide present. No TMH being reported.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94872.1;transl_table=11
AM406670.1	EMBL	gene	2474463	2474945	.	-	.	ID=gene2303;Name=azo2256;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2256
AM406670.1	EMBL	CDS	2474463	2474945	.	-	0	ID=cds2254;Parent=gene2303;Dbxref=EnsemblGenomes-Gn:azo2256,EnsemblGenomes-Tr:CAL94873,GOA:A1K7R8,InterPro:IPR003088,InterPro:IPR009056,UniProtKB/TrEMBL:A1K7R8,NCBI_GP:CAL94873.1;Name=CAL94873.1;Note=Conserved hypothetical cytochrome c-552. Homology to Bcepa03004834 of Burkholderia cepacia of 38%25 (gi|46313246|ref|ZP_00213837.1|(NBCI ENTREZ)). InterPro: Cytochrome c class I (IPR003088). Pfam: cytochrome c. probable signal peptide. no TMHS%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical cytochrome c-552;protein_id=CAL94873.1;transl_table=11
AM406670.1	EMBL	gene	2474953	2475486	.	-	.	ID=gene2304;Name=mauA;gbkey=Gene;gene=mauA;gene_biotype=protein_coding;locus_tag=azo2257
AM406670.1	EMBL	CDS	2474953	2475486	.	-	0	ID=cds2255;Parent=gene2304;Dbxref=EnsemblGenomes-Gn:azo2257,EnsemblGenomes-Tr:CAL94874,GOA:A1K7R9,InterPro:IPR013504,InterPro:IPR016008,UniProtKB/TrEMBL:A1K7R9,NCBI_GP:CAL94874.1;Name=CAL94874.1;Note=Probable methylamine dehydrogenase. Homology to mauD of P. denifrificans of 45%25 (CAA67190) carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin. InterPro: Methylamine dehydrogenase L subunit (IPR004229) Pfam: Methylamine dehydrogenase%2C L chain signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=mauA;product=probable methylamine dehydrogenase%2C L chain;protein_id=CAL94874.1;transl_table=11
AM406670.1	EMBL	gene	2475508	2476110	.	-	.	ID=gene2305;Name=mauD;gbkey=Gene;gene=mauD;gene_biotype=protein_coding;locus_tag=azo2258
AM406670.1	EMBL	CDS	2475508	2476110	.	-	0	ID=cds2256;Parent=gene2305;Dbxref=EnsemblGenomes-Gn:azo2258,EnsemblGenomes-Tr:CAL94875,GOA:A1K7S0,InterPro:IPR012336,InterPro:IPR013478,UniProtKB/TrEMBL:A1K7S0,NCBI_GP:CAL94875.1;Name=CAL94875.1;Note=Probable methylamine utilization protein. My be specifically involved in the processing transport and/or maturation of the methylamine dehydrogenase beta-subunit. Tigrfam: dsbE: periplasmic protein thiol:disulfide Signal peptide probable 1 TMHs%3B~Family membership;gbkey=CDS;gene=mauD;product=probable methylamine utilization protein mauD;protein_id=CAL94875.1;transl_table=11
AM406670.1	EMBL	gene	2476107	2476658	.	-	.	ID=gene2306;Name=mauE;gbkey=Gene;gene=mauE;gene_biotype=protein_coding;locus_tag=azo2259
AM406670.1	EMBL	CDS	2476107	2476658	.	-	0	ID=cds2257;Parent=gene2306;Dbxref=EnsemblGenomes-Gn:azo2259,EnsemblGenomes-Tr:CAL94876,GOA:A1K7S1,InterPro:IPR009908,UniProtKB/TrEMBL:A1K7S1,NCBI_GP:CAL94876.1;Name=CAL94876.1;Note=Methylamine utilization protein mauE. Homology to mauE of M. extorquens of 37%25 (sprot|MAUE_METEX) MAY BE SPECIFICALLY INVOLVED IN THE PROCESSING TRANSPORT AND/OR MATURATION OF THE MADH BETA-SUBUNIT. no signal peptide probable 4 TMHs%3B~Family membership;gbkey=CDS;gene=mauE;product=putative methylamine utilization protein mauE;protein_id=CAL94876.1;transl_table=11
AM406670.1	EMBL	gene	2476658	2477812	.	-	.	ID=gene2307;Name=maub;gbkey=Gene;gene=maub;gene_biotype=protein_coding;locus_tag=azo2260
AM406670.1	EMBL	CDS	2476658	2477812	.	-	0	ID=cds2258;Parent=gene2307;Dbxref=EnsemblGenomes-Gn:azo2260,EnsemblGenomes-Tr:CAL94877,GOA:A1K7S2,InterPro:IPR009451,InterPro:IPR011044,InterPro:IPR015943,UniProtKB/TrEMBL:A1K7S2,NCBI_GP:CAL94877.1;Name=CAL94877.1;Note=Methylamine dehydrogenase heavy chain precursor (MADH):- Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin. Entry name SWISSPROT:DHMH_METEX Prim. accession # Q49124 Identities %3D 100/339 (29%25) Prediction: Signal peptide Signal peptide probability: 1.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=maub;product=putative methylamine dehydrogenase heavy chain precursor;protein_id=CAL94877.1;transl_table=11
AM406670.1	EMBL	gene	2478283	2479272	.	+	.	ID=gene2308;Name=eutR;gbkey=Gene;gene=eutR;gene_biotype=protein_coding;locus_tag=azo2261
AM406670.1	EMBL	CDS	2478283	2479272	.	+	0	ID=cds2259;Parent=gene2308;Dbxref=EnsemblGenomes-Gn:azo2261,EnsemblGenomes-Tr:CAL94878,GOA:A1K7S3,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,UniProtKB/TrEMBL:A1K7S3,NCBI_GP:CAL94878.1;Name=CAL94878.1;Note=Putative ethanolamine operon transcriptional regulator%2C%3B~Family membership;gbkey=CDS;gene=eutR;product=putative ethanolamine operon transcriptional regulator;protein_id=CAL94878.1;transl_table=11
AM406670.1	EMBL	gene	2479608	2480288	.	+	.	ID=gene2309;Name=pdhR;gbkey=Gene;gene=pdhR;gene_biotype=protein_coding;locus_tag=azo2262
AM406670.1	EMBL	CDS	2479608	2480288	.	+	0	ID=cds2260;Parent=gene2309;Dbxref=EnsemblGenomes-Gn:azo2262,EnsemblGenomes-Tr:CAL94879,GOA:A1K7S4,InterPro:IPR000524,InterPro:IPR008920,InterPro:IPR011711,InterPro:IPR011991,UniProtKB/TrEMBL:A1K7S4,NCBI_GP:CAL94879.1;Name=CAL94879.1;Note=Putative pyruvate dehydrogenase complex repressor%2C%3B~Family membership;gbkey=CDS;gene=pdhR;product=putative pyruvate dehydrogenase complex repressor;protein_id=CAL94879.1;transl_table=11
AM406670.1	EMBL	gene	2480340	2481158	.	+	.	ID=gene2310;Name=azo2263;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2263
AM406670.1	EMBL	CDS	2480340	2481158	.	+	0	ID=cds2261;Parent=gene2310;Dbxref=EnsemblGenomes-Gn:azo2263,EnsemblGenomes-Tr:CAL94880,GOA:A1K7S5,InterPro:IPR001638,InterPro:IPR006311,InterPro:IPR018313,UniProtKB/TrEMBL:A1K7S5,NCBI_GP:CAL94880.1;Name=CAL94880.1;Note=Putative amino acid-binding protein. Homology to fliy of E. coli of 26%25 (AAC43545). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR amino acids. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR1638)%3B solute binding protein/glutamte receptor (IPR001311) Pfam: Bacterial extracellular solute-binding protein signal peptide no TMHS hisG: ATP phosphoribosyltransferase%3B~Specificity unclear;gbkey=CDS;product=putative amino acid-binding protein;protein_id=CAL94880.1;transl_table=11
AM406670.1	EMBL	gene	2481229	2481897	.	+	.	ID=gene2311;Name=azo2264;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2264
AM406670.1	EMBL	CDS	2481229	2481897	.	+	0	ID=cds2262;Parent=gene2311;Dbxref=EnsemblGenomes-Gn:azo2264,EnsemblGenomes-Tr:CAL94881,GOA:A1K7S6,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:A1K7S6,NCBI_GP:CAL94881.1;Name=CAL94881.1;Note=Amino acid ABC transporter%2C permease protein%2C 75%25 Identity to TrEMBL%3BQ87UQ0%2C 65%25 Identity to TrEMBL%3BQ8XXK9%2CQ6F6T8. Has PF00528%3B IPR000515%2C BPD_transp%3B Bacterial binding protein-dependent transport systems are multicomponent systems typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region%2Cthe sequence of these proteins is quite divergent%2C and they have a variable number of transmembrane helices%2Chowever they can be classified into seven families which have been respectively termed: araH%2C cysTW%2C fecCD%2C hisMQ%2ClivHM%2C malFG and oppBC. Has PROSITE%3BPS50928%3B ABC_TM1;gbkey=CDS;product=amino acid ABC transporter%2C permease protein;protein_id=CAL94881.1;transl_table=11
AM406670.1	EMBL	gene	2481897	2482550	.	+	.	ID=gene2312;Name=azo2265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2265
AM406670.1	EMBL	CDS	2481897	2482550	.	+	0	ID=cds2263;Parent=gene2312;Dbxref=EnsemblGenomes-Gn:azo2265,EnsemblGenomes-Tr:CAL94882,GOA:A1K7S7,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:A1K7S7,NCBI_GP:CAL94882.1;Name=CAL94882.1;Note=Conserved hypothetical amino acid permease. Homology to pspto5247 of P. syringae (trembl|Q87UP9). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM. PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE SUBSTRATE ACROSS THE MEMBRANE (BY SIMILARITY). Interpro: binding-protein-depenent transport system inner membrane component (IPR000515). Pfam: Binding-protein-dependent transport system. no signal peptide. 3 TMHs%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical amino acid permease;protein_id=CAL94882.1;transl_table=11
AM406670.1	EMBL	gene	2482537	2483265	.	+	.	ID=gene2313;Name=glnQ2;gbkey=Gene;gene=glnQ2;gene_biotype=protein_coding;locus_tag=azo2266
AM406670.1	EMBL	CDS	2482537	2483265	.	+	0	ID=cds2264;Parent=gene2313;Dbxref=EnsemblGenomes-Gn:azo2266,EnsemblGenomes-Tr:CAL94883,GOA:A1K7S8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7S8,NCBI_GP:CAL94883.1;Name=CAL94883.1;Note=Probable glutamine transport ATP-binding protein. Homology with glnQ of B. stearothermophilus of 53%25 (sprot|GLNQ_BACST). PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR GLUTAMINE. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. InterPro: AAA ATPase superfamily (IPR003593)%2C ABC_Transporter (IPR003439)%2C ATP/GTP_binding site motif A (P-loop) (IPR001687) Pfam: ABC transporter no signal peptide no TMHs mobB: molybdopterin-guanine dinucleotid%3B~High confidence in function and specificity;gbkey=CDS;gene=glnQ2;product=probable glutamine transport ATP-binding protein;protein_id=CAL94883.1;transl_table=11
AM406670.1	EMBL	gene	2483290	2483919	.	-	.	ID=gene2314;Name=gstB;gbkey=Gene;gene=gstB;gene_biotype=protein_coding;locus_tag=azo2267
AM406670.1	EMBL	CDS	2483290	2483919	.	-	0	ID=cds2265;Parent=gene2314;Dbxref=EnsemblGenomes-Gn:azo2267,EnsemblGenomes-Tr:CAL94884,GOA:A1K7S9,InterPro:IPR004045,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:A1K7S9,NCBI_GP:CAL94884.1;Name=CAL94884.1;Note=Probable Glutathione transferase. Homology to gstB of P. mirablilis of 29%25 (sprot|GT_PROMI). Catalysis of the reaction: R-X + glutathione %3D H-X + R-S-glutathione. R may be an aliphatic%2C aromatic or heterocyclic group%3B X may be a sulfate%2C nitrile or halide group. InterPro: Glutathione S-transferase N terminus(IPR004045)%2C Glutathione S-transferase C terminus (IPR004046) Pfam: Glutathione S-transferase%2C N-terminale domaine no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=gstB;product=putative glutathione transferase;protein_id=CAL94884.1;transl_table=11
AM406670.1	EMBL	gene	2484151	2484591	.	+	.	ID=gene2315;Name=azo2268;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2268
AM406670.1	EMBL	CDS	2484151	2484591	.	+	0	ID=cds2266;Parent=gene2315;Dbxref=EnsemblGenomes-Gn:azo2268,EnsemblGenomes-Tr:CAL94885,InterPro:IPR002810,InterPro:IPR012340,UniProtKB/TrEMBL:A1K7T0,NCBI_GP:CAL94885.1;Name=CAL94885.1;Note=Conserved hypothetical membrane protein. Homology to pp4833 of P. putida of 55%25 (trembl|Q88DJ2). no domains predicted. no signal peptide. 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94885.1;transl_table=11
AM406670.1	EMBL	gene	2484632	2485495	.	+	.	ID=gene2316;Name=azo2269;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2269
AM406670.1	EMBL	CDS	2484632	2485495	.	+	0	ID=cds2267;Parent=gene2316;Dbxref=EnsemblGenomes-Gn:azo2269,EnsemblGenomes-Tr:CAL94886,GOA:A1K7T1,InterPro:IPR001107,InterPro:IPR001972,UniProtKB/TrEMBL:A1K7T1,NCBI_GP:CAL94886.1;Name=CAL94886.1;Note=Conserved hypothetical band 7 family protein. Homology to pp4834 of P.putida of 67%25 (trembl|Q88DJ1). InterPro: Band 7 protein (IPR001107). Pfam: SPFH domain / Band 7 family. The band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins%2C cytoplasmic anti-proliferative proteins and stomatin%2C an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. probable 1 TMH. probable signal peptide (overlapping with the TMH)%3B~Family membership;gbkey=CDS;product=conserved hypothetical band 7 family protein;protein_id=CAL94886.1;transl_table=11
AM406670.1	EMBL	gene	2485527	2487548	.	-	.	ID=gene2317;Name=azo2270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2270
AM406670.1	EMBL	CDS	2485527	2487548	.	-	0	ID=cds2268;Parent=gene2317;Dbxref=EnsemblGenomes-Gn:azo2270,EnsemblGenomes-Tr:CAL94887,GOA:A1K7T2,InterPro:IPR003660,InterPro:IPR004089,UniProtKB/TrEMBL:A1K7T2,NCBI_GP:CAL94887.1;Name=CAL94887.1;Note=Methyl-accepting chemotaxis transducer%2C%3B~Specificity unclear;gbkey=CDS;product=methyl-accepting chemotaxis transducer;protein_id=CAL94887.1;transl_table=11
AM406670.1	EMBL	gene	2487857	2488717	.	+	.	ID=gene2318;Name=azo2271;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2271
AM406670.1	EMBL	CDS	2487857	2488717	.	+	0	ID=cds2269;Parent=gene2318;Dbxref=EnsemblGenomes-Gn:azo2271,EnsemblGenomes-Tr:CAL94888,InterPro:IPR013976,UniProtKB/TrEMBL:A1K7T3,NCBI_GP:CAL94888.1;Name=CAL94888.1;Note=Conserved hypothetical protein. Homology to Daro03003250 of Dechloromonas aromatica of 32%25 (gi|41723264|ref|ZP_00150207.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94888.1;transl_table=11
AM406670.1	EMBL	gene	2488755	2490671	.	-	.	ID=gene2319;Name=kup;gbkey=Gene;gene=kup;gene_biotype=protein_coding;locus_tag=azo2272
AM406670.1	EMBL	CDS	2488755	2490671	.	-	0	ID=cds2270;Parent=gene2319;Dbxref=EnsemblGenomes-Gn:azo2272,EnsemblGenomes-Tr:CAL94889,GOA:A1K7T4,InterPro:IPR003855,InterPro:IPR023051,NCBI_GP:CAL94889.1;Name=CAL94889.1;Note=Low affinity potassium transport system protein%2CKup. In E.coli%2C Kup has two domains%2C the first aa residues form an integral membrane domain and the C-terminal residues form a hydrophilic ones located at the citoplasmic side of the membrane. Kup: involved in potassium uptake and metabolism.%3B~High confidence in function and specificity;gbkey=CDS;gene=kup;product=putative potassium uptake protein;protein_id=CAL94889.1;transl_table=11
AM406670.1	EMBL	gene	2490788	2491693	.	-	.	ID=gene2320;Name=azo2273;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2273
AM406670.1	EMBL	CDS	2490788	2491693	.	-	0	ID=cds2271;Parent=gene2320;Dbxref=EnsemblGenomes-Gn:azo2273,EnsemblGenomes-Tr:CAL94890,GOA:A1K7T5,InterPro:IPR013094,InterPro:IPR029058,UniProtKB/TrEMBL:A1K7T5,NCBI_GP:CAL94890.1;Name=CAL94890.1;Note=Conserved hypothetical protein:- Entry name:-TREMBL:Q89MA9 Prim. accession # Q89MA9 InterPro:-IPR000379%3B Ser_estrs. Identities %3D 120/294 (40%25) Pfam:-Thioesterase domain Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94890.1;transl_table=11
AM406670.1	EMBL	gene	2491893	2492903	.	-	.	ID=gene2321;Name=sbp1;gbkey=Gene;gene=sbp1;gene_biotype=protein_coding;locus_tag=azo2274
AM406670.1	EMBL	CDS	2491893	2492903	.	-	0	ID=cds2272;Parent=gene2321;Dbxref=EnsemblGenomes-Gn:azo2274,EnsemblGenomes-Tr:CAL94891,GOA:A1K7T6,InterPro:IPR005669,UniProtKB/TrEMBL:A1K7T6,NCBI_GP:CAL94891.1;Name=CAL94891.1;Note=Sulfate-binding protein precursor%2C Sbp. E.coli Sulfate starvation-induced protein 2%2CSSI2. This protein specifically binds sulfate and is involved in its transmembrane transport. InterPro: Prokaryotic sulfate-/thiosulfate-binding protein. In other bacteria Sbp is a periplasmic component of an ABC transport system. TIGR00363: lipoprotein YaeC family Signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=sbp1;product=putative sulfate-binding protein precursor;protein_id=CAL94891.1;transl_table=11
AM406670.1	EMBL	gene	2493040	2493828	.	-	.	ID=gene2322;Name=azo2275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2275
AM406670.1	EMBL	CDS	2493040	2493828	.	-	0	ID=cds2273;Parent=gene2322;Dbxref=EnsemblGenomes-Gn:azo2275,EnsemblGenomes-Tr:CAL94892,GOA:A1K7T7,InterPro:IPR011697,InterPro:IPR017926,InterPro:IPR029062,UniProtKB/TrEMBL:A1K7T7,NCBI_GP:CAL94892.1;Name=CAL94892.1;Note=Hypothetical protein ycjL. TREMBL:Q890B8: 38%25 identity%2C 53%25 similarity. Glutamine amidotransferase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a pecific substrate%2C thus creating a new carbon-nitrogen group on the substrate. InterPro:IPR000991%3B GATase_1 PROSITE PS00442 GATASE_TYPE_I BLOCKS: BL00442 PFAM:PF00117 GATase%3B PF00310 GATase_2 trpG_papA: glutamine amidotransferase o No signal peptide (SignalP predicted) No transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;product=putative glutamine amidotransferase;protein_id=CAL94892.1;transl_table=11
AM406670.1	EMBL	gene	2493825	2494952	.	-	.	ID=gene2323;Name=ybdK;gbkey=Gene;gene=ybdK;gene_biotype=protein_coding;locus_tag=azo2276
AM406670.1	EMBL	CDS	2493825	2494952	.	-	0	ID=cds2274;Parent=gene2323;Dbxref=EnsemblGenomes-Gn:azo2276,EnsemblGenomes-Tr:CAL94893,GOA:A1K7T8,InterPro:IPR006336,InterPro:IPR011793,NCBI_GP:CAL94893.1;Name=CAL94893.1;Note=Glutamate-cysteine ligase ybdK%2C40%25 identity(56%25 similarity) to TrEMBL%3BQ8FK30. 57%25 identity to TrEMBL%3BQ8XU95. Has PF04107%2C Glutamate-cysteine ligase family 2(GCS2)%3BIPR006336:Also known as gamma-glutamylcysteine synthetase and gamma-ECS . This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea%2C bacteria and plants. May and Leaver [1] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes%2Cfrom an ancestral bacterial enzyme.%3B~Conserved hypothetical protein;gbkey=CDS;gene=ybdK;product=Glutamate-cysteine ligase;protein_id=CAL94893.1;transl_table=11
AM406670.1	EMBL	gene	2494949	2496157	.	-	.	ID=gene2324;Name=azo2277;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2277
AM406670.1	EMBL	CDS	2494949	2496157	.	-	0	ID=cds2275;Parent=gene2324;Dbxref=EnsemblGenomes-Gn:azo2277,EnsemblGenomes-Tr:CAL94894,GOA:A1K7T9,InterPro:IPR006153,UniProtKB/TrEMBL:A1K7T9,NCBI_GP:CAL94894.1;Name=CAL94894.1;Note=Conserved hypothetical Na/H antiporter. Homology to Bucepa03004091 of B.cepacia of 41%25 (gi|46320868|ref|ZP_00221251.1|(NBCI ENTREZ)). Has PF00999 Sodium/hydrogen exchanger family%3B IPR006153. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus%2C this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. No signal peptide. 12 TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical Na/H antiporter;protein_id=CAL94894.1;transl_table=11
AM406670.1	EMBL	gene	2496728	2498482	.	+	.	ID=gene2325;Name=azo2278;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2278
AM406670.1	EMBL	CDS	2496728	2498482	.	+	0	ID=cds2276;Parent=gene2325;Dbxref=EnsemblGenomes-Gn:azo2278,EnsemblGenomes-Tr:CAL94895,GOA:A1K7U0,InterPro:IPR000415,InterPro:IPR029479,UniProtKB/TrEMBL:A1K7U0,NCBI_GP:CAL94895.1;Name=CAL94895.1;Note=Conserved hypothetical protein. Homology to pa3943 of P. aeruginosa (TREMBL:Q9HX73). no domians predicted. weak evidence for signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94895.1;transl_table=11
AM406670.1	EMBL	gene	2498525	2499364	.	+	.	ID=gene2326;Name=azo2279;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2279
AM406670.1	EMBL	CDS	2498525	2499364	.	+	0	ID=cds2277;Parent=gene2326;Dbxref=EnsemblGenomes-Gn:azo2279,EnsemblGenomes-Tr:CAL94896,InterPro:IPR001763,InterPro:IPR002110,InterPro:IPR020683,UniProtKB/TrEMBL:A1K7U1,NCBI_GP:CAL94896.1;Name=CAL94896.1;Note=Conserved hypothetical protein. Homology to Avin02000067 of Azotobacter vinelandii of 50%25 (gi|23105742|ref|ZP_00092196.1|(NBCI ENTREZ)). InterPro: Ankyrin-repeat. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids.The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90 angle. The repeats stack together to form an L-shaped structure. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94896.1;transl_table=11
AM406670.1	EMBL	gene	2499372	2499698	.	+	.	ID=gene2327;Name=azo2280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2280
AM406670.1	EMBL	CDS	2499372	2499698	.	+	0	ID=cds2278;Parent=gene2327;Dbxref=EnsemblGenomes-Gn:azo2280,EnsemblGenomes-Tr:CAL94897,UniProtKB/TrEMBL:A1K7U2,NCBI_GP:CAL94897.1;Name=CAL94897.1;Note=Hypothetical protein 25%25 Identity to TrEMBL%3BQ7U749. No domains%2C repeats%2C motifs or features present;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94897.1;transl_table=11
AM406670.1	EMBL	gene	2499793	2500329	.	+	.	ID=gene2328;Name=nifF2;gbkey=Gene;gene=nifF2;gene_biotype=protein_coding;locus_tag=azo2281
AM406670.1	EMBL	CDS	2499793	2500329	.	+	0	ID=cds2279;Parent=gene2328;Dbxref=EnsemblGenomes-Gn:azo2281,EnsemblGenomes-Tr:CAL94898,GOA:A1K7U3,InterPro:IPR001226,InterPro:IPR008254,InterPro:IPR010086,InterPro:IPR029039,UniProtKB/TrEMBL:A1K7U3,NCBI_GP:CAL94898.1;Name=CAL94898.1;Note=probable flavodoxin. Homology to nifF of A. vinelandii of 58%25 (pir|FXAVEP) Flavodoxins are electron-transfer proteins that function in various electron transport systems. Flavodoxins bind one FMN molecule%2Cwhich serves as a redox-active prosthetic group and are functionally interchangeable with ferredoxins. InterPro: Flavodoxin (IPR001226) Pfam: Flavodoxin no signal peptide no TMHs taut: 4-oxalocrotonate tautomerase%3B~High confidence in function and specificity;gbkey=CDS;gene=nifF2;product=probable flavodoxin;protein_id=CAL94898.1;transl_table=11
AM406670.1	EMBL	gene	2500478	2503111	.	+	.	ID=gene2329;Name=azo2282;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2282
AM406670.1	EMBL	CDS	2500478	2503111	.	+	0	ID=cds2280;Parent=gene2329;Dbxref=EnsemblGenomes-Gn:azo2282,EnsemblGenomes-Tr:CAL94899,GOA:A1K7U4,InterPro:IPR002545,UniProtKB/TrEMBL:A1K7U4,NCBI_GP:CAL94899.1;Name=CAL94899.1;Note=Conserved hypothetical protein. Identity to Daro_1071 of Dechloromonas aromatica of 41%25 (gi|71846331|gb|AAZ45827.1|). Pfam: CheW-like domain. CheW-like domain proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY%2C which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW%2C suggesting that these domains can interact with each other.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94899.1;transl_table=11
AM406670.1	EMBL	gene	2503186	2503836	.	+	.	ID=gene2330;Name=azo2283;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2283
AM406670.1	EMBL	CDS	2503186	2503836	.	+	0	ID=cds2281;Parent=gene2330;Dbxref=EnsemblGenomes-Gn:azo2283,EnsemblGenomes-Tr:CAL94900,GOA:A1K7U5,InterPro:IPR001853,InterPro:IPR012336,UniProtKB/TrEMBL:A1K7U5,NCBI_GP:CAL94900.1;Name=CAL94900.1;Note=Similar to TREMBL:Q92PT6 (40%25 identical)%3B TREMBL:Q98MM5 (39%25 identical).;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94900.1;transl_table=11
AM406670.1	EMBL	gene	2503871	2504842	.	-	.	ID=gene2331;Name=azo2284;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2284
AM406670.1	EMBL	CDS	2503871	2504842	.	-	0	ID=cds2282;Parent=gene2331;Dbxref=EnsemblGenomes-Gn:azo2284,EnsemblGenomes-Tr:CAL94901,GOA:A1K7U6,InterPro:IPR018389,UniProtKB/TrEMBL:A1K7U6,NCBI_GP:CAL94901.1;Name=CAL94901.1;Note=Similar to TREMBL:Q9RBR1 (43%25 identity)%3B TREMBL:Q8GN85 (42%25 identity)%3B TREMBL:Q87NF7 (23%25 identity). SignalP predicting signal peptide.%3B~Specificity unclear;gbkey=CDS;product=putative periplasmic substrate binding protein;protein_id=CAL94901.1;transl_table=11
AM406670.1	EMBL	gene	2504880	2506196	.	-	.	ID=gene2332;Name=dctM3;gbkey=Gene;gene=dctM3;gene_biotype=protein_coding;locus_tag=azo2285
AM406670.1	EMBL	CDS	2504880	2506196	.	-	0	ID=cds2283;Parent=gene2332;Dbxref=EnsemblGenomes-Gn:azo2285,EnsemblGenomes-Tr:CAL94902,GOA:A1K7U7,InterPro:IPR004681,InterPro:IPR010656,UniProtKB/TrEMBL:A1K7U7,NCBI_GP:CAL94902.1;Name=CAL94902.1;Note=The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 38%25 DctM.IPR000252%3B DedA.IPR004681%3B TRAP_transptDctM. Pfam:PF06808%3B DctM%3B 1.PF00597%3B DedA%3B 1. TIGRFAMs:TIGR00786%3B dctM%3B 1. Signal peptide:present. TMhelix:11.%3B~Specificity unclear;gbkey=CDS;gene=dctM3;product=putative TRAP-type C4-dicarboxylate transport system%2C large permease;protein_id=CAL94902.1;transl_table=11
AM406670.1	EMBL	gene	2506198	2506716	.	-	.	ID=gene2333;Name=dctQ3;gbkey=Gene;gene=dctQ3;gene_biotype=protein_coding;locus_tag=azo2286
AM406670.1	EMBL	CDS	2506198	2506716	.	-	0	ID=cds2284;Parent=gene2333;Dbxref=EnsemblGenomes-Gn:azo2286,EnsemblGenomes-Tr:CAL94903,InterPro:IPR007387,UniProtKB/TrEMBL:A1K7U8,NCBI_GP:CAL94903.1;Name=CAL94903.1;Note=TRAP-type C4-dicarboxylate transport system%2C small permease component. The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate.40%25 DctQ. Pfam:PF04290%3B DctQ%3B 1. TMHelix:3.%3B~Function unclear;gbkey=CDS;gene=dctQ3;product=putative TRAP-type C4-dicarboxylate transport system%2C small permease component;protein_id=CAL94903.1;transl_table=11
AM406670.1	EMBL	gene	2506856	2507242	.	-	.	ID=gene2334;Name=azo2287;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2287
AM406670.1	EMBL	CDS	2506856	2507242	.	-	0	ID=cds2285;Parent=gene2334;Dbxref=EnsemblGenomes-Gn:azo2287,EnsemblGenomes-Tr:CAL94904,InterPro:IPR018714,UniProtKB/TrEMBL:A1K7U9,NCBI_GP:CAL94904.1;Name=CAL94904.1;Note=Conserved hypothetical protein. Homology to tll1086 of T.elongatus of 62%25 (trembl:Q8DJY4). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94904.1;transl_table=11
AM406670.1	EMBL	gene	2507315	2508640	.	-	.	ID=gene2335;Name=azo2288;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2288
AM406670.1	EMBL	CDS	2507315	2508640	.	-	0	ID=cds2286;Parent=gene2335;Dbxref=EnsemblGenomes-Gn:azo2288,EnsemblGenomes-Tr:CAL94905,InterPro:IPR003607,InterPro:IPR006674,UniProtKB/TrEMBL:A1K7V0,NCBI_GP:CAL94905.1;Name=CAL94905.1;Note=HD-domain containing protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=HD-domain containing protein;protein_id=CAL94905.1;transl_table=11
AM406670.1	EMBL	gene	2508773	2508863	.	-	.	ID=gene2336;Name=tRNA-Ser;gbkey=Gene;gene=tRNA-Ser;gene_biotype=tRNA;locus_tag=azo_tRNA_0044
AM406670.1	EMBL	tRNA	2508773	2508863	.	-	.	ID=rna49;Parent=gene2336;anticodon=(pos:complement(2508827..2508829));gbkey=tRNA;gene=tRNA-Ser;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ser
AM406670.1	EMBL	exon	2508773	2508863	.	-	.	ID=id50;Parent=rna49;anticodon=(pos:complement(2508827..2508829));gbkey=tRNA;gene=tRNA-Ser;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ser
AM406670.1	EMBL	gene	2509010	2509729	.	+	.	ID=gene2337;Name=azo2289;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2289
AM406670.1	EMBL	CDS	2509010	2509729	.	+	0	ID=cds2287;Parent=gene2337;Dbxref=EnsemblGenomes-Gn:azo2289,EnsemblGenomes-Tr:CAL94906,GOA:A1K7V1,InterPro:IPR003416,UniProtKB/TrEMBL:A1K7V1,NCBI_GP:CAL94906.1;Name=CAL94906.1;Note=Mg(2+) transport ATPase [mgtC family protein]%2C 35%25 identity(54%25 similarity) to TrEMBL%3BQ7NTN3. Has PF02308%2CMgtC family%3B(IPR003416%2C MgtCSapB_transpt)%3BThe MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known%2C but it is thought that MgtC may act as an accessory protein for MgtB%2C thus mediating magnesium influx into the cytosol. Also included in this family are the Bacillus subtilis SapB protein and several hypothetical proteins. NO Signal Peptide or TMH present.%3B~Family membership;gbkey=CDS;product=putative transport ATPase;protein_id=CAL94906.1;transl_table=11
AM406670.1	EMBL	gene	2509855	2510652	.	+	.	ID=gene2338;Name=azo2290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2290
AM406670.1	EMBL	CDS	2509855	2510652	.	+	0	ID=cds2288;Parent=gene2338;Dbxref=EnsemblGenomes-Gn:azo2290,EnsemblGenomes-Tr:CAL94907,InterPro:IPR017932,InterPro:IPR026869,InterPro:IPR029055,UniProtKB/TrEMBL:A1K7V2,NCBI_GP:CAL94907.1;Name=CAL94907.1;Note=Conserved hypothetical protein. Homology to hypothetical protein all0327 of Anabaena sp. of 52%25. no signal peptid. no TMHs. No domains predicted.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94907.1;transl_table=11
AM406670.1	EMBL	gene	2510662	2511024	.	+	.	ID=gene2339;Name=tfoX;gbkey=Gene;gene=tfoX;gene_biotype=protein_coding;locus_tag=azo2291
AM406670.1	EMBL	CDS	2510662	2511024	.	+	0	ID=cds2289;Parent=gene2339;Dbxref=EnsemblGenomes-Gn:azo2291,EnsemblGenomes-Tr:CAL94908,InterPro:IPR007076,UniProtKB/TrEMBL:A1K7V3,NCBI_GP:CAL94908.1;Name=CAL94908.1;Note=Conserved hypothetical DNA transformation protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;gene=tfoX;product=conserved hypothetical DNA transformation protein (competence activator);protein_id=CAL94908.1;transl_table=11
AM406670.1	EMBL	gene	2511136	2512284	.	+	.	ID=gene2340;Name=ada;gbkey=Gene;gene=ada;gene_biotype=protein_coding;locus_tag=azo2292
AM406670.1	EMBL	CDS	2511136	2512284	.	+	0	ID=cds2290;Parent=gene2340;Dbxref=EnsemblGenomes-Gn:azo2292,EnsemblGenomes-Tr:CAL94909,GOA:A1K7V4,InterPro:IPR001497,InterPro:IPR004026,InterPro:IPR008332,InterPro:IPR009057,InterPro:IPR011991,InterPro:IPR014048,InterPro:IPR016221,InterPro:IPR018060,UniProtKB/TrEMBL:A1K7V4,NCBI_GP:CAL94909.1;Name=CAL94909.1;Note=Methylated-DNA--[protein]-cysteine S-methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) InterPro: Methylated-DNA--protein-cysteine methyltransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=ada;product=Methylated-DNA--[protein]-cysteine S-methyltransferase;protein_id=CAL94909.1;transl_table=11
AM406670.1	EMBL	gene	2512299	2512964	.	+	.	ID=gene2341;Name=alkB;gbkey=Gene;gene=alkB;gene_biotype=protein_coding;locus_tag=azo2293
AM406670.1	EMBL	CDS	2512299	2512964	.	+	0	ID=cds2291;Parent=gene2341;Dbxref=EnsemblGenomes-Gn:azo2293,EnsemblGenomes-Tr:CAL94910,GOA:A1K7V5,InterPro:IPR005123,InterPro:IPR027450,UniProtKB/TrEMBL:A1K7V5,NCBI_GP:CAL94910.1;Name=CAL94910.1;Note=Alkylated DNA repair protein.Probably involved in the repair of alkylated DNA. Provides extensive resistance to alkylating agents.%3B~High confidence in function and specificity;gbkey=CDS;gene=alkB;product=DNA-directed DNA polymerase.;protein_id=CAL94910.1;transl_table=11
AM406670.1	EMBL	gene	2513048	2514142	.	+	.	ID=gene2342;Name=azo2294;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2294
AM406670.1	EMBL	CDS	2513048	2514142	.	+	0	ID=cds2292;Parent=gene2342;Dbxref=EnsemblGenomes-Gn:azo2294,EnsemblGenomes-Tr:CAL94911,GOA:A1K7V6,InterPro:IPR000834,UniProtKB/TrEMBL:A1K7V6,NCBI_GP:CAL94911.1;Name=CAL94911.1;Note=Putative Zinc carboxypeptidase-related protein%2C 45%25 identity to TrEMBL%3BQ6MKH4%2CZinc carboxypeptidase-related protein (EC 3.4.17.-) [Bd2418] [Bdellovibrio bacteriovorus] Has pfam00246%2C Zn_carbOpept%2C Zinc carboxypeptidase domain.%3B~High confidence in function and specificity;gbkey=CDS;product=carboxypeptidase A;protein_id=CAL94911.1;transl_table=11
AM406670.1	EMBL	gene	2514180	2514956	.	+	.	ID=gene2343;Name=azo2295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2295
AM406670.1	EMBL	CDS	2514180	2514956	.	+	0	ID=cds2293;Parent=gene2343;Dbxref=EnsemblGenomes-Gn:azo2295,EnsemblGenomes-Tr:CAL94912,GOA:A1K7V7,InterPro:IPR029058,UniProtKB/TrEMBL:A1K7V7,NCBI_GP:CAL94912.1;Name=CAL94912.1;Note=TREMBL:Q8EFJ6: 33%25 identity%2C 47%25 similarity. Probable Dihydrolipoamide acetyltransferase component of acetoin cleaving system (EC 2.3.1.12) (Acetoin dehydrogenase E2 component). Interpro:IPR000073%3B A/b_hydrolase (alpha/beta fold family). IPR000379%3B Ser_estrs. Pfam PF00561%3B Abhydrolase_1%3B 1 2a75: L-lysine exporter%3B~Function unclear;gbkey=CDS;product=putative hydrolase;protein_id=CAL94912.1;transl_table=11
AM406670.1	EMBL	gene	2515151	2515504	.	+	.	ID=gene2344;Name=phhB;gbkey=Gene;gene=phhB;gene_biotype=protein_coding;locus_tag=azo2296
AM406670.1	EMBL	CDS	2515151	2515504	.	+	0	ID=cds2294;Parent=gene2344;Dbxref=EnsemblGenomes-Gn:azo2296,EnsemblGenomes-Tr:CAL94913,GOA:A1K7V8,InterPro:IPR001533,NCBI_GP:CAL94913.1;Name=CAL94913.1;Note=PHS (4-alpha-hydroxy-tetrahydropterin dehydratase) (Pterin carbinolamine dehydratase) (PCD). InterPro: Pterin 4 alpha carbinolamine dehydratase%3B~High confidence in function and specificity;gbkey=CDS;gene=phhB;product=4a-hydroxytetrahydrobiopterin dehydratase;protein_id=CAL94913.1;transl_table=11
AM406670.1	EMBL	gene	2515532	2515825	.	+	.	ID=gene2345;Name=azo2297;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2297
AM406670.1	EMBL	CDS	2515532	2515825	.	+	0	ID=cds2295;Parent=gene2345;Dbxref=EnsemblGenomes-Gn:azo2297,EnsemblGenomes-Tr:CAL94914,InterPro:IPR003749,InterPro:IPR012675,InterPro:IPR016155,UniProtKB/TrEMBL:A1K7V9,NCBI_GP:CAL94914.1;Name=CAL94914.1;Note=Conserved hypothetical protein. Homology to RS05664 of R.solanacearum of 53%25 (trembl:Q8XQC7). No domains predicted. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94914.1;transl_table=11
AM406670.1	EMBL	gene	2515850	2516959	.	+	.	ID=gene2346;Name=azo2298;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2298
AM406670.1	EMBL	CDS	2515850	2516959	.	+	0	ID=cds2296;Parent=gene2346;Dbxref=EnsemblGenomes-Gn:azo2298,EnsemblGenomes-Tr:CAL94915,InterPro:IPR015943,UniProtKB/TrEMBL:A1K7W0,NCBI_GP:CAL94915.1;Name=CAL94915.1;Note=Conserved hypothetical protein. Homology to PA1356 of Pseudomonas aeruginosa of 69%25 (trembl|Q9I3Y8(SRS)). No domains predicted. No signal peptide or TMH reported to be present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94915.1;transl_table=11
AM406670.1	EMBL	gene	2516981	2518624	.	+	.	ID=gene2347;Name=aidB1;gbkey=Gene;gene=aidB1;gene_biotype=protein_coding;locus_tag=azo2299
AM406670.1	EMBL	CDS	2516981	2518624	.	+	0	ID=cds2297;Parent=gene2347;Dbxref=EnsemblGenomes-Gn:azo2299,EnsemblGenomes-Tr:CAL94916,GOA:A1K7W1,InterPro:IPR006089,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,UniProtKB/TrEMBL:A1K7W1,NCBI_GP:CAL94916.1;Name=CAL94916.1;Note=Aidb protein:-belongs to the acyl-coa dehydrogenase family. Catalysis of the reaction: acyl-CoA + acceptor %3D 2%2C3-dehydroacyl-CoA + reduced acceptor. Entry name SWISSPROT:AIDB_ECOLI Prim. accession # P33224 Identities %3D 257/515 (49%25) InterPro IPR006089%3B Acyl-CoA_dh. IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR006092%3B Acyl-CoA_dh_N. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. PF02771%3B Acyl-CoA_dh_N%3B 1 Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=aidB1;product=probable acyl-CoA dehydrogenase;protein_id=CAL94916.1;transl_table=11
AM406670.1	EMBL	gene	2519006	2520262	.	+	.	ID=gene2348;Name=azo2300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2300
AM406670.1	EMBL	CDS	2519006	2520262	.	+	0	ID=cds2298;Parent=gene2348;Dbxref=EnsemblGenomes-Gn:azo2300,EnsemblGenomes-Tr:CAL94917,InterPro:IPR009978,UniProtKB/TrEMBL:A1K7W2,NCBI_GP:CAL94917.1;Name=CAL94917.1;Note=Conserved hypothetical membrane protein. Homology to ORF428 of Roseateles depolymerans of 65%25 (trembl|Q9F206(SRS)). Pfam: Protein of unknown function (DUF1504). This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown. signal peptide. 10 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94917.1;transl_table=11
AM406670.1	EMBL	gene	2520561	2522381	.	+	.	ID=gene2349;Name=gspE3;gbkey=Gene;gene=gspE3;gene_biotype=protein_coding;locus_tag=azo2301
AM406670.1	EMBL	CDS	2520561	2522381	.	+	0	ID=cds2299;Parent=gene2349;Dbxref=EnsemblGenomes-Gn:azo2301,EnsemblGenomes-Tr:CAL94918,GOA:A1K7W3,InterPro:IPR001482,InterPro:IPR003593,InterPro:IPR007831,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7W3,NCBI_GP:CAL94918.1;Name=CAL94918.1;Note=General secretion pathway protein E%2C%3B~Specificity unclear;gbkey=CDS;gene=gspE3;product=general secretory pathway protein E;protein_id=CAL94918.1;transl_table=11
AM406670.1	EMBL	gene	2522542	2523762	.	+	.	ID=gene2350;Name=azo2302;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2302
AM406670.1	EMBL	CDS	2522542	2523762	.	+	0	ID=cds2300;Parent=gene2350;Dbxref=EnsemblGenomes-Gn:azo2302,EnsemblGenomes-Tr:CAL94919,InterPro:IPR003812,UniProtKB/TrEMBL:A1K7W4,NCBI_GP:CAL94919.1;Name=CAL94919.1;Note=Conserved hypothetical protein. Homology to Mll6421 of M.loti of 37%25 (trembl:Q989H3). Has PF02661%2C Fic protein family%3BIPR003812:This family consists of the Fic (filamentation induced by cAMP) protein and its relatives. The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate%2C indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94919.1;transl_table=11
AM406670.1	EMBL	gene	2523759	2525189	.	-	.	ID=gene2351;Name=azo2303;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2303
AM406670.1	EMBL	CDS	2523759	2525189	.	-	0	ID=cds2301;Parent=gene2351;Dbxref=EnsemblGenomes-Gn:azo2303,EnsemblGenomes-Tr:CAL94920,GOA:A1K7W5,InterPro:IPR004638,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K7W5,NCBI_GP:CAL94920.1;Name=CAL94920.1;Note=Conserved hypothetical membrane protein. Homology to Daro03002720 of Dechloromonas aromatica of 55%25 (gi|41723618|ref|ZP_00150528.1|(NBCI ENTREZ)). Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters.MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Similar to proteins involved in tetracycline resistance. Hypothetical transport protein yhcA%2C from B.subtilis. InterPro: Drug resistance transporter EmrB/QacA subfamily efflux_EmrB: drug resistance transport. Signal peptide predicted. 13 TMHs%3B~Function unclear;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94920.1;transl_table=11
AM406670.1	EMBL	gene	2525577	2526161	.	-	.	ID=gene2352;Name=azo2304;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2304
AM406670.1	EMBL	CDS	2525577	2526161	.	-	0	ID=cds2302;Parent=gene2352;Dbxref=EnsemblGenomes-Gn:azo2304,EnsemblGenomes-Tr:CAL94921,GOA:A1K7W6,InterPro:IPR000551,InterPro:IPR009061,UniProtKB/TrEMBL:A1K7W6,NCBI_GP:CAL94921.1;Name=CAL94921.1;Note=Transcriptional regulator%2C MerR-family InterPro: Bacterial regulatory protein%2C MerR%2C Putative DNA binding HTH reporting nucleic acid binding motif;gbkey=CDS;product=transcriptional regulator%2C MerR-family;protein_id=CAL94921.1;transl_table=11
AM406670.1	EMBL	gene	2526158	2526574	.	-	.	ID=gene2353;Name=azo2305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2305
AM406670.1	EMBL	CDS	2526158	2526574	.	-	0	ID=cds2303;Parent=gene2353;Dbxref=EnsemblGenomes-Gn:azo2305,EnsemblGenomes-Tr:CAL94922,UniProtKB/TrEMBL:A1K7W7,NCBI_GP:CAL94922.1;Name=CAL94922.1;Note=Conserved hypothetical protein. Homology to CV1954 of Chromobacterium violaceum of 33%25 (trembl:Q7NWM9). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94922.1;transl_table=11
AM406670.1	EMBL	gene	2526840	2527454	.	+	.	ID=gene2354;Name=azo2306;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2306
AM406670.1	EMBL	CDS	2526840	2527454	.	+	0	ID=cds2304;Parent=gene2354;Dbxref=EnsemblGenomes-Gn:azo2306,EnsemblGenomes-Tr:CAL94923,GOA:A1K7W8,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,UniProtKB/TrEMBL:A1K7W8,NCBI_GP:CAL94923.1;Name=CAL94923.1;Note=Tyrosine recombinase xerD. Site-specific tyrosine recombinase which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerC binding sites by a short central region forming the heterotetrameric xerC-xerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex xerD specifically exchanges the bottom DNA strands (By similarity). InterPro: Phage integrase%3B~Specificity unclear;gbkey=CDS;product=putative Tyrosine recombinase xerD;protein_id=CAL94923.1;transl_table=11
AM406670.1	EMBL	gene	2527848	2531426	.	+	.	ID=gene2355;Name=azo2307;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2307
AM406670.1	EMBL	CDS	2527848	2531426	.	+	0	ID=cds2305;Parent=gene2355;Dbxref=EnsemblGenomes-Gn:azo2307,EnsemblGenomes-Tr:CAL94924,UniProtKB/TrEMBL:A1K7W9,NCBI_GP:CAL94924.1;Name=CAL94924.1;Note=Hypothetical protein%2C 39%25 similarity to TrEMBL%3BQ8Z0Z1. No Signal Peptide or TMH present. TIGR00090: iojap-related protein;gbkey=CDS;product=Hypothetical protein;protein_id=CAL94924.1;transl_table=11
AM406670.1	EMBL	gene	2531423	2537752	.	+	.	ID=gene2356;Name=azo2308;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2308
AM406670.1	EMBL	CDS	2531423	2537752	.	+	0	ID=cds2306;Parent=gene2356;Dbxref=EnsemblGenomes-Gn:azo2308,EnsemblGenomes-Tr:CAL94925,GOA:A1K7X0,InterPro:IPR001650,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR018973,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7X0,NCBI_GP:CAL94925.1;Name=CAL94925.1;Note=Hypothetical protein yjiV. TREMBL:Q8XC75: 33%25 identity%2C 49%25 similarity InterPro: IPR001410%3BDEAD/DEAH box helicase IPR001650%3B Helicase_C. Pfam: PF00270%3B DEAD%3B 1. PF00271%3B Helicase_C%3B 1. SMART: SM00487%3B DEXDc%3B 1. SM00490%3B HELICc L18_bact: ribosomal protein L18 No signal peptide No transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;product=putative helicase related protein;protein_id=CAL94925.1;transl_table=11
AM406670.1	EMBL	gene	2537814	2538605	.	+	.	ID=gene2357;Name=azo2309;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2309
AM406670.1	EMBL	CDS	2537814	2538605	.	+	0	ID=cds2307;Parent=gene2357;Dbxref=EnsemblGenomes-Gn:azo2309,EnsemblGenomes-Tr:CAL94926,InterPro:IPR020530,UniProtKB/TrEMBL:A1K7X1,NCBI_GP:CAL94926.1;Name=CAL94926.1;Note=Conserved hypothetical protein. 61%25 identity to hypothetical protein Bucepa02000624 [Burkholderia cepacia R1808] (gi|46324486|ref|ZP_00224847.1|(NBCI ENTREZ)). NO Signal peptide or TMH reported present. no domains predicted;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94926.1;transl_table=11
AM406670.1	EMBL	gene	2538956	2540617	.	-	.	ID=gene2358;Name=palZ;gbkey=Gene;gene=palZ;gene_biotype=protein_coding;locus_tag=azo2310
AM406670.1	EMBL	CDS	2538956	2540617	.	-	0	ID=cds2308;Parent=gene2358;Dbxref=EnsemblGenomes-Gn:azo2310,EnsemblGenomes-Tr:CAL94927,GOA:A1K7X2,InterPro:IPR006046,InterPro:IPR006047,InterPro:IPR006589,InterPro:IPR013780,InterPro:IPR013781,InterPro:IPR015902,InterPro:IPR017853,InterPro:IPR022567,UniProtKB/TrEMBL:A1K7X2,NCBI_GP:CAL94927.1;Name=CAL94927.1;Note=Alpha -D-1%2C4-glucosidase%2C PalZ. Involved in the hydrolysis of terminal 1%2C4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose. 55%25 Alpha_amyl_cat.IPR006589%3B Alp_amyl_cat_sub.IPR006046%3B Glyco_hydro_13. Pfam:PF00128%3B Alpha-amylase%3B1.%3B~High confidence in function and specificity;gbkey=CDS;gene=palZ;product=putative alpha-D-1%2C4-glucosidase;protein_id=CAL94927.1;transl_table=11
AM406670.1	EMBL	gene	2540718	2541824	.	+	.	ID=gene2359;Name=spr1;gbkey=Gene;gene=spr1;gene_biotype=protein_coding;locus_tag=azo2311
AM406670.1	EMBL	CDS	2540718	2541824	.	+	0	ID=cds2309;Parent=gene2359;Dbxref=EnsemblGenomes-Gn:azo2311,EnsemblGenomes-Tr:CAL94928,GOA:A1K7X3,InterPro:IPR001547,InterPro:IPR013781,InterPro:IPR017853,UniProtKB/TrEMBL:A1K7X3,NCBI_GP:CAL94928.1;Name=CAL94928.1;Note=Glucan 13-beta-glucosidase precursor (EC 3.2.1.58) (Exo-13-beta- glucanase).BETA-GLUCANASES PARTICIPATE IN THE METABOLISM OF BETA-GLUCAN THE MAIN STRUCTURAL COMPONENT OF THE CELL WALL. IT COULD ALSO FUNCTION BIOSYNTHETICALLY AS A TRANSGLYCOSYLASE. 33%25 Glyco_hydro_5. Pfam:PF00150%3B Cellulase%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=spr1;product=putative glucan 1%2C3-beta-glucosidase;protein_id=CAL94928.1;transl_table=11
AM406670.1	EMBL	gene	2541810	2543588	.	-	.	ID=gene2360;Name=azo2312;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2312
AM406670.1	EMBL	CDS	2541810	2543588	.	-	0	ID=cds2310;Parent=gene2360;Dbxref=EnsemblGenomes-Gn:azo2312,EnsemblGenomes-Tr:CAL94929,GOA:A1K7X4,InterPro:IPR010509,InterPro:IPR011527,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7X4,NCBI_GP:CAL94929.1;Name=CAL94929.1;Note=Conserved hypothetical membrane protein. Homology to Avin02002177 of Azotobacter vinelandii of 61%25 (gi|53611929|ref|ZP_00090985.2|(NBCI ENTREZ)). InterPro: ABC transporter (IPR003439). Pfam: ABC transporter. no signal peptide. 5 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membran protein;protein_id=CAL94929.1;transl_table=11
AM406670.1	EMBL	gene	2543591	2544544	.	-	.	ID=gene2361;Name=glk2;gbkey=Gene;gene=glk2;gene_biotype=protein_coding;locus_tag=azo2313
AM406670.1	EMBL	CDS	2543591	2544544	.	-	0	ID=cds2311;Parent=gene2361;Dbxref=EnsemblGenomes-Gn:azo2313,EnsemblGenomes-Tr:CAL94930,GOA:A1K7X5,InterPro:IPR003836,UniProtKB/TrEMBL:A1K7X5,NCBI_GP:CAL94930.1;Name=CAL94930.1;Note=Glucokinase (EC 2.7.1.2) (Glucose kinase). Catalytic activity: ATP + d-glucose %3D ADP+ d-glucose 6-phosphate. 24%25 Glucokinase. Pfam:PF02685%3B Glucokinase%3B 1. TIGRFAMs:TIGR00749%3B glk%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=glk2;product=putative glucokinase;protein_id=CAL94930.1;transl_table=11
AM406670.1	EMBL	gene	2544700	2546202	.	+	.	ID=gene2362;Name=azo2314;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2314
AM406670.1	EMBL	CDS	2544700	2546202	.	+	0	ID=cds2312;Parent=gene2362;Dbxref=EnsemblGenomes-Gn:azo2314,EnsemblGenomes-Tr:CAL94931,GOA:A1K7X6,UniProtKB/TrEMBL:A1K7X6,NCBI_GP:CAL94931.1;Name=CAL94931.1;Note=Family membership;gbkey=CDS;product=glycosyltransferase;protein_id=CAL94931.1;transl_table=11
AM406670.1	EMBL	gene	2546172	2546876	.	+	.	ID=gene2363;Name=azo2315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2315
AM406670.1	EMBL	CDS	2546172	2546876	.	+	0	ID=cds2313;Parent=gene2363;Dbxref=EnsemblGenomes-Gn:azo2315,EnsemblGenomes-Tr:CAL94932,GOA:A1K7X7,InterPro:IPR029021,UniProtKB/TrEMBL:A1K7X7,NCBI_GP:CAL94932.1;Name=CAL94932.1;Note=Conserved hypothetical tyrosine/serine phosphatase%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical tyrosine/serine phosphatase;protein_id=CAL94932.1;transl_table=11
AM406670.1	EMBL	gene	2546873	2548639	.	+	.	ID=gene2364;Name=msbA1;gbkey=Gene;gene=msbA1;gene_biotype=protein_coding;locus_tag=azo2316
AM406670.1	EMBL	CDS	2546873	2548639	.	+	0	ID=cds2314;Parent=gene2364;Dbxref=EnsemblGenomes-Gn:azo2316,EnsemblGenomes-Tr:CAL94933,GOA:A1K7X8,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR011917,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7X8,NCBI_GP:CAL94933.1;Name=CAL94933.1;Note=Lipid A export ATP-binding/permease protein msbA. MsbA (TC 3.A.1.106.1) is involved in lipid A and possibly also glycerophospholipids export. The transmembrane domain (TMD) forms a pore in the inner membrane and the ATP-binding domain (NBD) is responible for energy generation. Similar to TREMBL:Q8ZGA9%3B TREMBL:Q8XXB6%3B SWISSPROT:P60752 (37%25 identity). InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003593): AAA ATPase. InterPro (IPR001140): ABC transporter%2C transmembrane region. Pfam (PF00664): ABC transporter transmembrane region. Pfam (PF00005): ABC transporter. TMHMM reporting five transmembrane helices. TC (3.A.1.106): The Lipid Exporter (LipidE) Family.%3B~High confidence in function and specificity;gbkey=CDS;gene=msbA1;product=Lipid A export ATP-binding/permease protein;protein_id=CAL94933.1;transl_table=11
AM406670.1	EMBL	gene	2548636	2549829	.	+	.	ID=gene2365;Name=azo2317;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2317
AM406670.1	EMBL	CDS	2548636	2549829	.	+	0	ID=cds2315;Parent=gene2365;Dbxref=EnsemblGenomes-Gn:azo2317,EnsemblGenomes-Tr:CAL94934,UniProtKB/TrEMBL:A1K7X9,NCBI_GP:CAL94934.1;Name=CAL94934.1;Note=Hypothetical protein predicted by Glimmer/Critica. No homology of the entire protein to the data bank. no dmains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL94934.1;transl_table=11
AM406670.1	EMBL	gene	2549826	2551112	.	+	.	ID=gene2366;Name=azo2318;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2318
AM406670.1	EMBL	CDS	2549826	2551112	.	+	0	ID=cds2316;Parent=gene2366;Dbxref=EnsemblGenomes-Gn:azo2318,EnsemblGenomes-Tr:CAL94935,UniProtKB/TrEMBL:A1K7Y0,NCBI_GP:CAL94935.1;Name=CAL94935.1;Note=Hypothetical membrane protein. homology to rsc2204 of R.solanacearum of 28%25 (trembl|Q8XXB2(SRS)). no domains predicted. no signal peptide. 10 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL94935.1;transl_table=11
AM406670.1	EMBL	gene	2551109	2551732	.	+	.	ID=gene2367;Name=azo2319;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2319
AM406670.1	EMBL	CDS	2551109	2551732	.	+	0	ID=cds2317;Parent=gene2367;Dbxref=EnsemblGenomes-Gn:azo2319,EnsemblGenomes-Tr:CAL94936,GOA:A1K7Y1,InterPro:IPR001675,UniProtKB/TrEMBL:A1K7Y1,NCBI_GP:CAL94936.1;Name=CAL94936.1;Note=CMP-N-acetylneuraminate-beta-galactosamide-alpha-23-sialyltransferase (EC 2.4.99.4) (Beta-galactoside alpha-23-sialyltransferase) (Alpha 23-ST) (Gal-NAc6S) (Gal-beta-13-GalNAc-alpha-23-sialyltransferase) (ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (ST3Gal I). IT MAY BE RESPONSIBLE FOR THE SYNTHESIS OF THE SEQUENCE NEUAC-ALPHA-23-GAL-BETA-13-GALNAC- FOUND ON SUGAR CHAINS O-LINKED TO THR OR SER AND ALSO AS A TERMINAL SEQUENCE ON CERTAIN GANGLIOSIDES. SIAT4-A AND SIAT4-B SIALYLATE THE SAME ACCEPTOR SUBSTRATES BUT EXHIBIT DIFFERENT KM VALUES.%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL94936.1;transl_table=11
AM406670.1	EMBL	gene	2551737	2552735	.	+	.	ID=gene2368;Name=azo2320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2320
AM406670.1	EMBL	CDS	2551737	2552735	.	+	0	ID=cds2318;Parent=gene2368;Dbxref=EnsemblGenomes-Gn:azo2320,EnsemblGenomes-Tr:CAL94937,InterPro:IPR007345,UniProtKB/TrEMBL:A1K7Y2,NCBI_GP:CAL94937.1;Name=CAL94937.1;Note=Conserved hypothetical protein. Homology to Rsph03001342 of Rhodobacter sphaeroides of 39%25 (gi|22957735|ref|ZP_00005426.1|(NBCI ENTREZ)). Has PF04230%2C Polysaccharide pyruvyl transferase%3BIPR007345 PS_pyruv_trans%3B Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94937.1;transl_table=11
AM406670.1	EMBL	gene	2552955	2554031	.	+	.	ID=gene2369;Name=waaC1;gbkey=Gene;gene=waaC1;gene_biotype=protein_coding;locus_tag=azo2321
AM406670.1	EMBL	CDS	2552955	2554031	.	+	0	ID=cds2319;Parent=gene2369;Dbxref=EnsemblGenomes-Gn:azo2321,EnsemblGenomes-Tr:CAL94938,GOA:A1K7Y3,InterPro:IPR002201,UniProtKB/TrEMBL:A1K7Y3,NCBI_GP:CAL94938.1;Name=CAL94938.1;Note=High confidence in function and specificity;gbkey=CDS;gene=waaC1;product=lipopolysaccharide heptosyltransferase I;protein_id=CAL94938.1;transl_table=11
AM406670.1	EMBL	gene	2554028	2555143	.	+	.	ID=gene2370;Name=azo2322;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2322
AM406670.1	EMBL	CDS	2554028	2555143	.	+	0	ID=cds2320;Parent=gene2370;Dbxref=EnsemblGenomes-Gn:azo2322,EnsemblGenomes-Tr:CAL94939,GOA:A1K7Y4,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:A1K7Y4,NCBI_GP:CAL94939.1;Name=CAL94939.1;Note=Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-). InterPro: Glycosyl transferases group 1%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL94939.1;transl_table=11
AM406670.1	EMBL	gene	2555172	2556242	.	+	.	ID=gene2371;Name=azo2323;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2323
AM406670.1	EMBL	CDS	2555172	2556242	.	+	0	ID=cds2321;Parent=gene2371;Dbxref=EnsemblGenomes-Gn:azo2323,EnsemblGenomes-Tr:CAL94940,GOA:A1K7Y5,InterPro:IPR001296,UniProtKB/TrEMBL:A1K7Y5,NCBI_GP:CAL94940.1;Name=CAL94940.1;Note=Lipopolysaccharide core biosynthesis glycosyl transferase lpsE (EC 2.-.-.-).%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL94940.1;transl_table=11
AM406670.1	EMBL	gene	2556244	2557083	.	+	.	ID=gene2372;Name=azo2324;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2324
AM406670.1	EMBL	CDS	2556244	2557083	.	+	0	ID=cds2322;Parent=gene2372;Dbxref=EnsemblGenomes-Gn:azo2324,EnsemblGenomes-Tr:CAL94941,GOA:A1K7Y6,InterPro:IPR002509,InterPro:IPR011330,UniProtKB/TrEMBL:A1K7Y6,NCBI_GP:CAL94941.1;Name=CAL94941.1;Note=29%25 Polysac_deacet. Pfam:PF01522%3B Polysacc_deac_1%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;product=putative polysaccharide deacetylase;protein_id=CAL94941.1;transl_table=11
AM406670.1	EMBL	gene	2557095	2557580	.	+	.	ID=gene2373;Name=azo2325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2325
AM406670.1	EMBL	CDS	2557095	2557580	.	+	0	ID=cds2323;Parent=gene2373;Dbxref=EnsemblGenomes-Gn:azo2325,EnsemblGenomes-Tr:CAL94942,GOA:A1K7Y7,InterPro:IPR013538,InterPro:IPR023393,UniProtKB/TrEMBL:A1K7Y7,NCBI_GP:CAL94942.1;Name=CAL94942.1;Note=Conserved hypothetical protein. Homology to CV1439 of Chromobacterium violaceum of 58%25 (trembl:Q7NY36). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94942.1;transl_table=11
AM406670.1	EMBL	gene	2557664	2559307	.	+	.	ID=gene2374;Name=azo2326;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2326
AM406670.1	EMBL	CDS	2557664	2559307	.	+	0	ID=cds2324;Parent=gene2374;Dbxref=EnsemblGenomes-Gn:azo2326,EnsemblGenomes-Tr:CAL94943,GOA:A1K7Y8,InterPro:IPR000160,InterPro:IPR003660,InterPro:IPR029787,UniProtKB/TrEMBL:A1K7Y8,NCBI_GP:CAL94943.1;Name=CAL94943.1;Note=Conserved hypothetical signaling protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical signaling protein;protein_id=CAL94943.1;transl_table=11
AM406670.1	EMBL	gene	2559320	2560276	.	-	.	ID=gene2375;Name=cbl 2;gbkey=Gene;gene=cbl 2;gene_biotype=protein_coding;locus_tag=azo2327
AM406670.1	EMBL	CDS	2559320	2560276	.	-	0	ID=cds2325;Parent=gene2375;Dbxref=EnsemblGenomes-Gn:azo2327,EnsemblGenomes-Tr:CAL94944,GOA:A1K7Y9,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K7Y9,NCBI_GP:CAL94944.1;Name=CAL94944.1;Note=HTH-type transcriptional regulator cbl (Cys regulon transcriptional activator) Belongs to the LysR family of transcriptional regulators. THIS PROTEIN IS A POSITIVE REGULATOR OF GENE EXPRESSION FOR THE CYSTEINE REGULON. THE INDUCER FOR CYSB IS N-ACETYLSERINE (BY SIMILARITY). ribD_Cterm: riboflavin-specific deami 42%25 similarity to the HTH-type transcriptional regulator cbl%2C E. coli SWISSPROT:CBL_ECOLI IPR000847%3B HTH_LysR. IPR005119%3B LysR_subst. PF00126%3B HTH_1%3B 1. helix-turn-helix PF03466%3B LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~High confidence in function and specificity;gbkey=CDS;gene=cbl 2;product=putative HTH-type transcriptional regulator cbl;protein_id=CAL94944.1;transl_table=11
AM406670.1	EMBL	gene	2560607	2561695	.	+	.	ID=gene2376;Name=pspF;gbkey=Gene;gene=pspF;gene_biotype=protein_coding;locus_tag=azo2328
AM406670.1	EMBL	CDS	2560607	2561695	.	+	0	ID=cds2326;Parent=gene2376;Dbxref=EnsemblGenomes-Gn:azo2328,EnsemblGenomes-Tr:CAL94945,GOA:A1K7Z0,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K7Z0,NCBI_GP:CAL94945.1;Name=CAL94945.1;Note=Probable transcriptional regulator%2C%3B~Specificity unclear;gbkey=CDS;gene=pspF;product=probable transcriptional regulator;protein_id=CAL94945.1;transl_table=11
AM406670.1	EMBL	gene	2561964	2562611	.	+	.	ID=gene2377;Name=tonB2;gbkey=Gene;gene=tonB2;gene_biotype=protein_coding;locus_tag=azo2329
AM406670.1	EMBL	CDS	2561964	2562611	.	+	0	ID=cds2327;Parent=gene2377;Dbxref=EnsemblGenomes-Gn:azo2329,EnsemblGenomes-Tr:CAL94946,GOA:A1K7Z1,InterPro:IPR003538,InterPro:IPR006260,UniProtKB/TrEMBL:A1K7Z1,NCBI_GP:CAL94946.1;Name=CAL94946.1;Note=For the transport of bound iron across the inner membrane%2C a receptor complex is needed. The major component of this is tonB%2C a 27kDa protein that facilitates energy transfer from the proton motive force to outer membrane receptors. InterPro: Proline-rich region%3B~Function unclear;gbkey=CDS;gene=tonB2;product=periplasmic biopolymer transport protein linking inner and outer membranes;protein_id=CAL94946.1;transl_table=11
AM406670.1	EMBL	gene	2562648	2563469	.	+	.	ID=gene2378;Name=exbB4;gbkey=Gene;gene=exbB4;gene_biotype=protein_coding;locus_tag=azo2330
AM406670.1	EMBL	CDS	2562648	2563469	.	+	0	ID=cds2328;Parent=gene2378;Dbxref=EnsemblGenomes-Gn:azo2330,EnsemblGenomes-Tr:CAL94947,GOA:A1K7Z2,InterPro:IPR002898,UniProtKB/TrEMBL:A1K7Z2,NCBI_GP:CAL94947.1;Name=CAL94947.1;Note=Putative biopolymer transport protein ExbB. Homology to exbB of B. pertussis of 36%25. ExbB is part of the TonB-dependent transduction complex. The tonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. Pfam: MotA/TolQ/ExbB proton channel family signal peptide most probable 4TMHs%3B~Family membership;gbkey=CDS;gene=exbB4;product=putative biopolymer transport protein ExbB;protein_id=CAL94947.1;transl_table=11
AM406670.1	EMBL	gene	2563476	2563895	.	+	.	ID=gene2379;Name=exbD5;gbkey=Gene;gene=exbD5;gene_biotype=protein_coding;locus_tag=azo2331
AM406670.1	EMBL	CDS	2563476	2563895	.	+	0	ID=cds2329;Parent=gene2379;Dbxref=EnsemblGenomes-Gn:azo2331,EnsemblGenomes-Tr:CAL94948,GOA:A1K7Z3,InterPro:IPR003400,UniProtKB/TrEMBL:A1K7Z3,NCBI_GP:CAL94948.1;Name=CAL94948.1;Note=Putative biopolymer transport protein exbD. Homology to exbD of E. coli of 34%25. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH%3B~Family membership;gbkey=CDS;gene=exbD5;product=putative biopolymer transport protein ExbD;protein_id=CAL94948.1;transl_table=11
AM406670.1	EMBL	gene	2563914	2564342	.	+	.	ID=gene2380;Name=exbD6;gbkey=Gene;gene=exbD6;gene_biotype=protein_coding;locus_tag=azo2332
AM406670.1	EMBL	CDS	2563914	2564342	.	+	0	ID=cds2330;Parent=gene2380;Dbxref=EnsemblGenomes-Gn:azo2332,EnsemblGenomes-Tr:CAL94949,GOA:A1K7Z4,InterPro:IPR003400,UniProtKB/TrEMBL:A1K7Z4,NCBI_GP:CAL94949.1;Name=CAL94949.1;Note=Putative biopolymer transport protein. Homology to exbD1 of X. campestris of 31%25. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH%3B~Family membership;gbkey=CDS;gene=exbD6;product=putative biopolymer transport protein ExbD;protein_id=CAL94949.1;transl_table=11
AM406670.1	EMBL	gene	2564464	2565738	.	+	.	ID=gene2381;Name=azo2333;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2333
AM406670.1	EMBL	CDS	2564464	2565738	.	+	0	ID=cds2331;Parent=gene2381;Dbxref=EnsemblGenomes-Gn:azo2333,EnsemblGenomes-Tr:CAL94950,GOA:A1K7Z5,InterPro:IPR006143,UniProtKB/TrEMBL:A1K7Z5,NCBI_GP:CAL94950.1;Name=CAL94950.1;Note=HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C TREMBL:Q7WF48 (49%25 identity)%3B TREMBL:Q881X8 (49%25 identity). Pfam (PF00529): HlyD family secretion protein. TMHMM reporting one transmembrane helix. TC (8.A.1): The Membrane Fusion Protein (MFP) Family.%3B~Family membership;gbkey=CDS;product=membrane fusion protein;protein_id=CAL94950.1;transl_table=11
AM406670.1	EMBL	gene	2565735	2568839	.	+	.	ID=gene2382;Name=azo2334;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2334
AM406670.1	EMBL	CDS	2565735	2568839	.	+	0	ID=cds2332;Parent=gene2382;Dbxref=EnsemblGenomes-Gn:azo2334,EnsemblGenomes-Tr:CAL94951,GOA:A1K7Z6,InterPro:IPR001036,InterPro:IPR027463,UniProtKB/TrEMBL:A1K7Z6,NCBI_GP:CAL94951.1;Name=CAL94951.1;Note=AcrB/AcrD/AcrF family protein. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2CSWISSPROT:P76399 (44%25 identity). Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TMHMM reporting 10 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~High confidence in function and specificity;gbkey=CDS;product=RND efflux transporter%2C permease protein;protein_id=CAL94951.1;transl_table=11
AM406670.1	EMBL	gene	2568839	2571973	.	+	.	ID=gene2383;Name=azo2335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2335
AM406670.1	EMBL	CDS	2568839	2571973	.	+	0	ID=cds2333;Parent=gene2383;Dbxref=EnsemblGenomes-Gn:azo2335,EnsemblGenomes-Tr:CAL94952,GOA:A1K7Z7,InterPro:IPR001036,InterPro:IPR027463,UniProtKB/TrEMBL:A1K7Z7,NCBI_GP:CAL94952.1;Name=CAL94952.1;Note=AcrB/AcrD/AcrF family member. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q881X7 (44%25 identity)%3B SWISSPROT:P76399 (48%25 identity). InterPro (IPR001036): Acriflavin resistance protein Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TMHMM reporting 10 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. HTH reporting nucleic acid binding motif.%3B~Specificity unclear;gbkey=CDS;product=RND efflux transporter%2C permease protein;protein_id=CAL94952.1;transl_table=11
AM406670.1	EMBL	gene	2572063	2573526	.	+	.	ID=gene2384;Name=opcM1;gbkey=Gene;gene=opcM1;gene_biotype=protein_coding;locus_tag=azo2336
AM406670.1	EMBL	CDS	2572063	2573526	.	+	0	ID=cds2334;Parent=gene2384;Dbxref=EnsemblGenomes-Gn:azo2336,EnsemblGenomes-Tr:CAL94953,GOA:A1K7Z8,InterPro:IPR003423,InterPro:IPR010131,UniProtKB/TrEMBL:A1K7Z8,NCBI_GP:CAL94953.1;Name=CAL94953.1;Note=Putative outer membrane efflux protein. Homology to opcM of B. cepacia of 36%25. Component of an efflux system that confers multiple antibiotic resistence. Pfam: outer membrane efflux protein signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=opcM1;product=putative outer membrane efflux protein;protein_id=CAL94953.1;transl_table=11
AM406670.1	EMBL	gene	2573541	2574254	.	+	.	ID=gene2385;Name=azo2337;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2337
AM406670.1	EMBL	CDS	2573541	2574254	.	+	0	ID=cds2335;Parent=gene2385;Dbxref=EnsemblGenomes-Gn:azo2337,EnsemblGenomes-Tr:CAL94954,GOA:A1K7Z9,InterPro:IPR016174,UniProtKB/TrEMBL:A1K7Z9,NCBI_GP:CAL94954.1;Name=CAL94954.1;Note=Conserved hypothetical hydrogenase cytochrone b-type subunit. Homology to C. vinosum of 48%25 (trembl|Q46471). Involved in electron transfer from hydrogen to oxygen. Pfam: Nickel-dependent hydrogenase b-type cytochrome. probable signal peptide. probable 4 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical hydrogenase cytochrome b-type subunit;protein_id=CAL94954.1;transl_table=11
AM406670.1	EMBL	gene	2574305	2576401	.	+	.	ID=gene2386;Name=prc;gbkey=Gene;gene=prc;gene_biotype=protein_coding;locus_tag=azo2338
AM406670.1	EMBL	CDS	2574305	2576401	.	+	0	ID=cds2336;Parent=gene2386;Dbxref=EnsemblGenomes-Gn:azo2338,EnsemblGenomes-Tr:CAL94955,GOA:A1K800,InterPro:IPR001478,InterPro:IPR004447,InterPro:IPR005151,InterPro:IPR020992,InterPro:IPR029045,UniProtKB/TrEMBL:A1K800,NCBI_GP:CAL94955.1;Name=CAL94955.1;Note=Tail-specific protease precursor (EC 3.4.21.102) (Protease Re) (PRC protein) (C-terminal processing peptidase). prc: carboxyl-terminal protease%3B~High confidence in function and specificity;gbkey=CDS;gene=prc;product=tail-specific penicillin-binding protein protease;protein_id=CAL94955.1;transl_table=11
AM406670.1	EMBL	gene	2577133	2577597	.	-	.	ID=gene2387;Name=cycA2;gbkey=Gene;gene=cycA2;gene_biotype=protein_coding;locus_tag=azo2339
AM406670.1	EMBL	CDS	2577133	2577597	.	-	0	ID=cds2337;Parent=gene2387;Dbxref=EnsemblGenomes-Gn:azo2339,EnsemblGenomes-Tr:CAL94956,GOA:A1K801,InterPro:IPR002321,InterPro:IPR010980,InterPro:IPR012127,InterPro:IPR015984,UniProtKB/TrEMBL:A1K801,NCBI_GP:CAL94956.1;Name=CAL94956.1;Note=Probable cytochrome c'. Homology to cycA of C. vinosum of 48%25 (sprot|CYCP_CHRVI). CYTOCHROME C IS THE MOST WIDELY OCCURRING BACTERIAL C-TYPE CYTOCHROME. CYTOCHROMES C ARE HIGH-SPIN PROTEINS AND THE HEME HAS NO SIXTH LIGAND. THEIR EXACT FUNCTION IS NOT KNOWN. InterPro: Cytochrome c class II (IPR002321) Pfam: Cytochrome c singal peptide no TMHs%3B~Function unclear;gbkey=CDS;gene=cycA2;product=probable cytochrome c';protein_id=CAL94956.1;transl_table=11
AM406670.1	EMBL	gene	2577644	2578648	.	-	.	ID=gene2388;Name=azo2340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2340
AM406670.1	EMBL	CDS	2577644	2578648	.	-	0	ID=cds2338;Parent=gene2388;Dbxref=EnsemblGenomes-Gn:azo2340,EnsemblGenomes-Tr:CAL94957,GOA:A1K802,InterPro:IPR002925,InterPro:IPR029058,UniProtKB/TrEMBL:A1K802,NCBI_GP:CAL94957.1;Name=CAL94957.1;Note=Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway%2C TREMBL:Q8XBV0 (48%25 identity)%3B TREMBL:Q8EI44 (45%25 identity). InterPro (IPR002925): Dienelactone hydrolase. InterPro (IPR000379): Esterase/lipase/thioesterase. Pfam (PF01738): Dienelactone hydrolase family. SignalP predicting signal peptide.%3B~Family membership;gbkey=CDS;product=dienelactone hydrolase family protein;protein_id=CAL94957.1;transl_table=11
AM406670.1	EMBL	gene	2578692	2579669	.	-	.	ID=gene2389;Name=gnl;gbkey=Gene;gene=gnl;gene_biotype=protein_coding;locus_tag=azo2341
AM406670.1	EMBL	CDS	2578692	2579669	.	-	0	ID=cds2339;Parent=gene2389;Dbxref=EnsemblGenomes-Gn:azo2341,EnsemblGenomes-Tr:CAL94958,GOA:A1K803,InterPro:IPR011042,InterPro:IPR013658,UniProtKB/TrEMBL:A1K803,NCBI_GP:CAL94958.1;Name=CAL94958.1;Note=Gluconolactonase precursor (D-glucono-delta-lactone lactonohydrolase).HYDROLYZES THE GLUCONOLACTONE FORMED BY GLUCOSE-FRUCTOSE OXIDOREDUCTASE AND THAT FORMED IN AEROBIC CONDITIONS BY THE GLUCOSE DEHYDROGENASE PRESENT. 30%25 SMP-30. Pfam:PF03758%3B SMP-30%3B 1. Signal peptide: present.%3B~High confidence in function and specificity;gbkey=CDS;gene=gnl;product=putative gluconolactonase precursor;protein_id=CAL94958.1;transl_table=11
AM406670.1	EMBL	gene	2579886	2580566	.	-	.	ID=gene2390;Name=cc41;gbkey=Gene;gene=cc41;gene_biotype=protein_coding;locus_tag=azo2342
AM406670.1	EMBL	CDS	2579886	2580566	.	-	0	ID=cds2340;Parent=gene2390;Dbxref=EnsemblGenomes-Gn:azo2342,EnsemblGenomes-Tr:CAL94959,GOA:A1K804,InterPro:IPR003088,InterPro:IPR009056,InterPro:IPR024167,UniProtKB/TrEMBL:A1K804,NCBI_GP:CAL94959.1;Name=CAL94959.1;Note=Putative cytochrome c4. Homology to cc4 of A. vinelandii of 34%25 (sprot|CYC4_AZOVI). Diheme%2C high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems. Pfam: cytochrome C signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=cc41;product=putative cytochrome c4;protein_id=CAL94959.1;transl_table=11
AM406670.1	EMBL	gene	2580648	2581226	.	-	.	ID=gene2391;Name=bcp3;gbkey=Gene;gene=bcp3;gene_biotype=protein_coding;locus_tag=azo2343
AM406670.1	EMBL	CDS	2580648	2581226	.	-	0	ID=cds2341;Parent=gene2391;Dbxref=EnsemblGenomes-Gn:azo2343,EnsemblGenomes-Tr:CAL94960,GOA:A1K805,InterPro:IPR000866,InterPro:IPR012336,UniProtKB/TrEMBL:A1K805,NCBI_GP:CAL94960.1;Name=CAL94960.1;Note=Conserved hypothetical bacterioferritin comigratory protein homolog. Homology to bp1307 of B. pertussis of 43%25 (trembl|Q7VYL2). Pfam: AhpC/TSA family. signal peptide. no TMHs%3B~Family membership;gbkey=CDS;gene=bcp3;product=conserved hypothetical bacterioferritin comigratory protein;protein_id=CAL94960.1;transl_table=11
AM406670.1	EMBL	gene	2581238	2581618	.	-	.	ID=gene2392;Name=azo2344;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2344
AM406670.1	EMBL	CDS	2581238	2581618	.	-	0	ID=cds2342;Parent=gene2392;Dbxref=EnsemblGenomes-Gn:azo2344,EnsemblGenomes-Tr:CAL94961,GOA:A1K806,InterPro:IPR010980,UniProtKB/TrEMBL:A1K806,NCBI_GP:CAL94961.1;Name=CAL94961.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94961.1;transl_table=11
AM406670.1	EMBL	gene	2581721	2583178	.	-	.	ID=gene2393;Name=azo2345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2345
AM406670.1	EMBL	CDS	2581721	2583178	.	-	0	ID=cds2343;Parent=gene2393;Dbxref=EnsemblGenomes-Gn:azo2345,EnsemblGenomes-Tr:CAL94962,GOA:A1K807,InterPro:IPR006311,InterPro:IPR010869,InterPro:IPR017849,InterPro:IPR017850,UniProtKB/TrEMBL:A1K807,NCBI_GP:CAL94962.1;Name=CAL94962.1;Note=Conserved hypothetical secreted protein. Homology to RB5328 of Rhodopirellula baltica of 47%25 (trembl|Q7US09(SRS)). Signal Peptide present. No TMH reported Present. Has PF07394%2C Protein of unknown function (DUF1501)%3BIPR010869%3BThis family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94962.1;transl_table=11
AM406670.1	EMBL	gene	2583205	2585517	.	-	.	ID=gene2394;Name=azo2346;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2346
AM406670.1	EMBL	CDS	2583205	2585517	.	-	0	ID=cds2344;Parent=gene2394;Dbxref=EnsemblGenomes-Gn:azo2346,EnsemblGenomes-Tr:CAL94963,InterPro:IPR011444,InterPro:IPR022655,UniProtKB/TrEMBL:A1K808,NCBI_GP:CAL94963.1;Name=CAL94963.1;Note=Conserved hypothetical secreted protein. Homology to RB6288 of Rhodopirellula baltica of 30%25 (trembl|Q7UQJ4(SRS)). No domains predicted. No TMHs. Signal P reporting signal peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94963.1;transl_table=11
AM406670.1	EMBL	gene	2586159	2588936	.	+	.	ID=gene2395;Name=fyuA;gbkey=Gene;gene=fyuA;gene_biotype=protein_coding;locus_tag=azo2347
AM406670.1	EMBL	CDS	2586159	2588936	.	+	0	ID=cds2345;Parent=gene2395;Dbxref=EnsemblGenomes-Gn:azo2347,EnsemblGenomes-Tr:CAL94964,GOA:A1K809,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1K809,NCBI_GP:CAL94964.1;Name=CAL94964.1;Note=Yersinia enterocolitica%2Ciron-repressible outer membrane protein%2C FyuA. FyuA:RECEPTOR FOR THE BACTERIOCIN PESTICIN AND FOR THE SIDEROPHORE YERSINIABACTIN. TonB-dependent outer membrane receptor.%3B~Function unclear;gbkey=CDS;gene=fyuA;product=putative TonB-dependent receptor;protein_id=CAL94964.1;transl_table=11
AM406670.1	EMBL	gene	2588979	2589458	.	-	.	ID=gene2396;Name=azo2348;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2348
AM406670.1	EMBL	CDS	2588979	2589458	.	-	0	ID=cds2346;Parent=gene2396;Dbxref=EnsemblGenomes-Gn:azo2348,EnsemblGenomes-Tr:CAL94965,GOA:A1K810,InterPro:IPR001763,UniProtKB/TrEMBL:A1K810,NCBI_GP:CAL94965.1;Name=CAL94965.1;Note=Similar to a Rhodanese-related sulfurtransferase%2CPspE. %2C PspE:Thiosulphate sulphurtransferase ( 2.8.1.1) is an enzyme which catalyzes the transfer of the sulphane atom of thiosulphate to cyanide%2C to form sulphite and thiocyanate.Involved in cyanide detoxification.%2C Signal peptide present.%2C%3B~Function unclear;gbkey=CDS;product=Hypothetical Rhodanese sulfurtransferase protein;protein_id=CAL94965.1;transl_table=11
AM406670.1	EMBL	gene	2589804	2591366	.	+	.	ID=gene2397;Name=azo2349;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2349
AM406670.1	EMBL	CDS	2589804	2591366	.	+	0	ID=cds2347;Parent=gene2397;Dbxref=EnsemblGenomes-Gn:azo2349,EnsemblGenomes-Tr:CAL94966,UniProtKB/TrEMBL:A1K811,NCBI_GP:CAL94966.1;Name=CAL94966.1;Note=Conserved hypothetical membrane protein. Homology to PA0435 of Pseudomonas aeruginosa of 35%25 (trembl|Q9I682(SRS)). No domains predicted. Signal peptide. 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94966.1;transl_table=11
AM406670.1	EMBL	gene	2591415	2591855	.	-	.	ID=gene2398;Name=azo2350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2350
AM406670.1	EMBL	CDS	2591415	2591855	.	-	0	ID=cds2348;Parent=gene2398;Dbxref=EnsemblGenomes-Gn:azo2350,EnsemblGenomes-Tr:CAL94967,InterPro:IPR021219,UniProtKB/TrEMBL:A1K812,NCBI_GP:CAL94967.1;Name=CAL94967.1;Note=Conserved hypothetical protein. Homology to orf of Desulfovibrio vulgaris of 41%25 (tremblnew|AAS97780(SRS)). No domain predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94967.1;transl_table=11
AM406670.1	EMBL	gene	2592005	2592502	.	+	.	ID=gene2399;Name=arsC1;gbkey=Gene;gene=arsC1;gene_biotype=protein_coding;locus_tag=azo2351
AM406670.1	EMBL	CDS	2592005	2592502	.	+	0	ID=cds2349;Parent=gene2399;Dbxref=EnsemblGenomes-Gn:azo2351,EnsemblGenomes-Tr:CAL94968,GOA:A1K813,InterPro:IPR017867,InterPro:IPR023485,UniProtKB/TrEMBL:A1K813,NCBI_GP:CAL94968.1;Name=CAL94968.1;Note=Putative arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier)%2C%3B~Family membership;gbkey=CDS;gene=arsC1;product=putative arsenate reductase (glutaredoxin);protein_id=CAL94968.1;transl_table=11
AM406670.1	EMBL	gene	2592559	2592918	.	+	.	ID=gene2400;Name=arsR;gbkey=Gene;gene=arsR;gene_biotype=protein_coding;locus_tag=azo2352
AM406670.1	EMBL	CDS	2592559	2592918	.	+	0	ID=cds2350;Parent=gene2400;Dbxref=EnsemblGenomes-Gn:azo2352,EnsemblGenomes-Tr:CAL94969,GOA:A1K814,InterPro:IPR001845,InterPro:IPR011991,UniProtKB/TrEMBL:A1K814,NCBI_GP:CAL94969.1;Name=CAL94969.1;Note=Putative regulatory protein arsR-family arsenical resistance operon repressor%2C smtB from Synechococcus PCC 7942%2C which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein%3B cadC%2C a protein required for cadmium-resistance%3B and hypothetical protein yqcJ from Bacillus subtilis.%3B~Family membership;gbkey=CDS;gene=arsR;product=putative regulatory protein ArsR family;protein_id=CAL94969.1;transl_table=11
AM406670.1	EMBL	gene	2592915	2593328	.	+	.	ID=gene2401;Name=arsC2;gbkey=Gene;gene=arsC2;gene_biotype=protein_coding;locus_tag=azo2353
AM406670.1	EMBL	CDS	2592915	2593328	.	+	0	ID=cds2351;Parent=gene2401;Dbxref=EnsemblGenomes-Gn:azo2353,EnsemblGenomes-Tr:CAL94970,GOA:A1K815,InterPro:IPR017867,InterPro:IPR023485,UniProtKB/TrEMBL:A1K815,NCBI_GP:CAL94970.1;Name=CAL94970.1;Note=Putative arsenate reductase%2C%3B~Family membership;gbkey=CDS;gene=arsC2;product=putative arsenate reductase (glutaredoxin);protein_id=CAL94970.1;transl_table=11
AM406670.1	EMBL	gene	2593338	2594402	.	+	.	ID=gene2402;Name=arsB;gbkey=Gene;gene=arsB;gene_biotype=protein_coding;locus_tag=azo2354
AM406670.1	EMBL	CDS	2593338	2594402	.	+	0	ID=cds2352;Parent=gene2402;Dbxref=EnsemblGenomes-Gn:azo2354,EnsemblGenomes-Tr:CAL94971,GOA:A1K816,InterPro:IPR002657,InterPro:IPR004706,UniProtKB/TrEMBL:A1K816,NCBI_GP:CAL94971.1;Name=CAL94971.1;Note=Putative arsenical-resistance protein arsB%2C%3B~Family membership;gbkey=CDS;gene=arsB;product=putative arsenical-resistance protein;protein_id=CAL94971.1;transl_table=11
AM406670.1	EMBL	gene	2594417	2594788	.	+	.	ID=gene2403;Name=arsD;gbkey=Gene;gene=arsD;gene_biotype=protein_coding;locus_tag=azo2355
AM406670.1	EMBL	CDS	2594417	2594788	.	+	0	ID=cds2353;Parent=gene2403;Dbxref=EnsemblGenomes-Gn:azo2355,EnsemblGenomes-Tr:CAL94972,GOA:A1K817,InterPro:IPR010712,UniProtKB/TrEMBL:A1K817,NCBI_GP:CAL94972.1;Name=CAL94972.1;Note=Arsenical resistance operon trans-acting repressor ArsD%2C%3B~Family membership;gbkey=CDS;gene=arsD;product=arsenical resistance operon trans-acting repressor;protein_id=CAL94972.1;transl_table=11
AM406670.1	EMBL	gene	2594802	2596550	.	+	.	ID=gene2404;Name=arsA;gbkey=Gene;gene=arsA;gene_biotype=protein_coding;locus_tag=azo2356
AM406670.1	EMBL	CDS	2594802	2596550	.	+	0	ID=cds2354;Parent=gene2404;Dbxref=EnsemblGenomes-Gn:azo2356,EnsemblGenomes-Tr:CAL94973,GOA:A1K818,InterPro:IPR003593,InterPro:IPR016300,InterPro:IPR025723,InterPro:IPR027417,InterPro:IPR027541,UniProtKB/TrEMBL:A1K818,NCBI_GP:CAL94973.1;Name=CAL94973.1;Note=Arsenite-transporting ATPase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=arsA;product=arsenite-transporting ATPase;protein_id=CAL94973.1;transl_table=11
AM406670.1	EMBL	gene	2596593	2598086	.	-	.	ID=gene2405;Name=azo2357;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2357
AM406670.1	EMBL	CDS	2596593	2598086	.	-	0	ID=cds2355;Parent=gene2405;Dbxref=EnsemblGenomes-Gn:azo2357,EnsemblGenomes-Tr:CAL94974,GOA:A1K819,InterPro:IPR000120,InterPro:IPR023631,UniProtKB/TrEMBL:A1K819,NCBI_GP:CAL94974.1;Name=CAL94974.1;Note=Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-) (Glu-ADT subunit A). Furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu- tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).%3B~Family membership;gbkey=CDS;product=probable amidase;protein_id=CAL94974.1;transl_table=11
AM406670.1	EMBL	gene	2598201	2599088	.	-	.	ID=gene2406;Name=azo2358;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2358
AM406670.1	EMBL	CDS	2598201	2599088	.	-	0	ID=cds2356;Parent=gene2406;Dbxref=EnsemblGenomes-Gn:azo2358,EnsemblGenomes-Tr:CAL94975,GOA:A1K820,InterPro:IPR009057,InterPro:IPR018060,UniProtKB/TrEMBL:A1K820,NCBI_GP:CAL94975.1;Name=CAL94975.1;Note=Hypothetical AraC-family transcriptional regulator;gbkey=CDS;product=hypothetical AraC-family transcriptional regulator;protein_id=CAL94975.1;transl_table=11
AM406670.1	EMBL	gene	2599193	2599573	.	-	.	ID=gene2407;Name=azo2359;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2359
AM406670.1	EMBL	CDS	2599193	2599573	.	-	0	ID=cds2357;Parent=gene2407;Dbxref=EnsemblGenomes-Gn:azo2359,EnsemblGenomes-Tr:CAL94976,GOA:A1K821,InterPro:IPR004370,InterPro:IPR014347,UniProtKB/TrEMBL:A1K821,NCBI_GP:CAL94976.1;Name=CAL94976.1;Note=oxaloacetate tautomerase%2C41%25 identity to TrEMBL%3BO32183%3BYusQ protein [yusQ] [Bacillus subtilis subsp. subtilis str. 168]. Has PF01361%3B(IPR004370)%3BTautomerase enzyme%3BThis family includes the enzyme 4-oxalocrotonate tautomerase Q01468 that catalyses the ketonisation of 2-hydroxymuconate to 2-oxo-3-hexenedioate. No Signal peptide or TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=oxaloacetate tautomerase;protein_id=CAL94976.1;transl_table=11
AM406670.1	EMBL	gene	2599708	2600517	.	+	.	ID=gene2408;Name=azo2360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2360
AM406670.1	EMBL	CDS	2599708	2600517	.	+	0	ID=cds2358;Parent=gene2408;Dbxref=EnsemblGenomes-Gn:azo2360,EnsemblGenomes-Tr:CAL94977,GOA:A1K822,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K822,NCBI_GP:CAL94977.1;Name=CAL94977.1;Note=Transcriptional regulator%2C LysR family%2C%3B~Specificity unclear;gbkey=CDS;product=transcriptional regulator%2C LysR family;protein_id=CAL94977.1;transl_table=11
AM406670.1	EMBL	gene	2600495	2601667	.	-	.	ID=gene2409;Name=azo2361;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2361
AM406670.1	EMBL	CDS	2600495	2601667	.	-	0	ID=cds2359;Parent=gene2409;Dbxref=EnsemblGenomes-Gn:azo2361,EnsemblGenomes-Tr:CAL94978,GOA:A1K823,InterPro:IPR013094,InterPro:IPR029058,UniProtKB/TrEMBL:A1K823,NCBI_GP:CAL94978.1;Name=CAL94978.1;Note=Acetyl esterase:-has an esterase activity. triacetyl glycerol (triacetin) is a substrate of the enzyme. Entry name SWISSPROT:AES_ECOLI Prim. accession # P23872 Identities %3D 57/229 (24%25) InterPro IPR002168%3B Lipolytic_enzyme. IPR000379%3B Ser_estrs. Pfam :-Thioesterase Prediction: Non-secretory protein Signal peptide probability: 0.233 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;product=putative acetyl esterase;protein_id=CAL94978.1;transl_table=11
AM406670.1	EMBL	gene	2601814	2603754	.	-	.	ID=gene2410;Name=azo2362;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2362
AM406670.1	EMBL	CDS	2601814	2603754	.	-	0	ID=cds2360;Parent=gene2410;Dbxref=EnsemblGenomes-Gn:azo2362,EnsemblGenomes-Tr:CAL94979,GOA:A1K824,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR013656,UniProtKB/TrEMBL:A1K824,NCBI_GP:CAL94979.1;Name=CAL94979.1;Note=Putative sensor kinase/response regulator hybrid protein%2C%3B~Specificity unclear;gbkey=CDS;product=putative sensor kinase/response regulator hybrid protein;protein_id=CAL94979.1;transl_table=11
AM406670.1	EMBL	gene	2604007	2605017	.	-	.	ID=gene2411;Name=sbp2;gbkey=Gene;gene=sbp2;gene_biotype=protein_coding;locus_tag=azo2363
AM406670.1	EMBL	CDS	2604007	2605017	.	-	0	ID=cds2361;Parent=gene2411;Dbxref=EnsemblGenomes-Gn:azo2363,EnsemblGenomes-Tr:CAL94980,GOA:A1K825,InterPro:IPR000957,InterPro:IPR005669,UniProtKB/TrEMBL:A1K825,NCBI_GP:CAL94980.1;Name=CAL94980.1;Note=Sulfate-binding protein precursor%2C Sbp. 69%25 Sulphate_bind. IPR005669%3B Thiosulph_bind.InterPro: Prokaryotic sulfate-/thiosulfate-binding protein. TIGRFAMs:TIGR00971%3B 3a0106s03%3B 1. Belongs to the prokaryotic sulfate binding protein family. In other bacteria Sbp is a periplasmic component of an ABC transport system.%3B~High confidence in function and specificity;gbkey=CDS;gene=sbp2;product=putative periplasmic sulfate-binding protein;protein_id=CAL94980.1;transl_table=11
AM406670.1	EMBL	gene	2605073	2605756	.	-	.	ID=gene2412;Name=azo2364;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2364
AM406670.1	EMBL	CDS	2605073	2605756	.	-	0	ID=cds2362;Parent=gene2412;Dbxref=EnsemblGenomes-Gn:azo2364,EnsemblGenomes-Tr:CAL94981,InterPro:IPR016186,InterPro:IPR016187,UniProtKB/TrEMBL:A1K826,NCBI_GP:CAL94981.1;Name=CAL94981.1;Note=Conserved hypothetical secreted protein. Homology to bll5801 of B. japonicum of 57%25 (trembl|Q89I38(SRS)). No domains predicted. Signal P reporting signal peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94981.1;transl_table=11
AM406670.1	EMBL	gene	2606215	2606502	.	+	.	ID=gene2413;Name=groES2;gbkey=Gene;gene=groES2;gene_biotype=protein_coding;locus_tag=azo2365
AM406670.1	EMBL	CDS	2606215	2606502	.	+	0	ID=cds2363;Parent=gene2413;Dbxref=EnsemblGenomes-Gn:azo2365,EnsemblGenomes-Tr:CAL94982,GOA:A1K827,InterPro:IPR011032,InterPro:IPR020818,UniProtKB/TrEMBL:A1K827,NCBI_GP:CAL94982.1;Name=CAL94982.1;Note=Chaperonin GroES. Homology to groES of B. japonicum of 58%25 (sprot|CH11_BRAJA). Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. InterPro: Chaperonins cpn10 (10 Kd subunit)(IPR001476) Pfam: chaperonin 10 Kd subunit no signal peptide no TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=groES2;product=chaperonin GroES;protein_id=CAL94982.1;transl_table=11
AM406670.1	EMBL	gene	2606556	2608199	.	+	.	ID=gene2414;Name=groEL3;gbkey=Gene;gene=groEL3;gene_biotype=protein_coding;locus_tag=azo2366
AM406670.1	EMBL	CDS	2606556	2608199	.	+	0	ID=cds2364;Parent=gene2414;Dbxref=EnsemblGenomes-Gn:azo2366,EnsemblGenomes-Tr:CAL94983,GOA:A1K828,InterPro:IPR001844,InterPro:IPR002423,InterPro:IPR018370,InterPro:IPR027409,InterPro:IPR027413,NCBI_GP:CAL94983.1;Name=CAL94983.1;Note=Chaperonin GroEL. Homology to groEL of B. japonicum of 65%25 (SWISSPROT:CH61_BRAJA). Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (By similarity). Pfam: TCP-1/cpn60 chaperonin family no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=groEL3;product=chaperonin GroEL;protein_id=CAL94983.1;transl_table=11
AM406670.1	EMBL	gene	2608274	2609170	.	-	.	ID=gene2415;Name=azo2367;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2367
AM406670.1	EMBL	CDS	2608274	2609170	.	-	0	ID=cds2365;Parent=gene2415;Dbxref=EnsemblGenomes-Gn:azo2367,EnsemblGenomes-Tr:CAL94984,GOA:A1K829,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K829,NCBI_GP:CAL94984.1;Name=CAL94984.1;Note=Transcriptional regulator%2C LysR family%2C%3B~Function unclear;gbkey=CDS;product=transcriptional regulator%2C LysR family;protein_id=CAL94984.1;transl_table=11
AM406670.1	EMBL	gene	2609291	2610286	.	+	.	ID=gene2416;Name=azo2368;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2368
AM406670.1	EMBL	CDS	2609291	2610286	.	+	0	ID=cds2366;Parent=gene2416;Dbxref=EnsemblGenomes-Gn:azo2368,EnsemblGenomes-Tr:CAL94985,InterPro:IPR016040,UniProtKB/TrEMBL:A1K830,NCBI_GP:CAL94985.1;Name=CAL94985.1;Note=Conserved hypothetical protein. Homology to RSc3335 of Ralstonia solanacearum of 52%25 (gnl|keqq|rso:RS02569(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94985.1;transl_table=11
AM406670.1	EMBL	gene	2610283	2610723	.	+	.	ID=gene2417;Name=azo2369;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2369
AM406670.1	EMBL	CDS	2610283	2610723	.	+	0	ID=cds2367;Parent=gene2417;Dbxref=EnsemblGenomes-Gn:azo2369,EnsemblGenomes-Tr:CAL94986,UniProtKB/TrEMBL:A1K831,NCBI_GP:CAL94986.1;Name=CAL94986.1;Note=Conserved hypothetical membrane protein. Homology to Pflu02000368 of Pseudomonas fluorescens of 34%25 (gi|48732319|ref|ZP_00266062.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94986.1;transl_table=11
AM406670.1	EMBL	gene	2610763	2611167	.	+	.	ID=gene2418;Name=azo2370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2370
AM406670.1	EMBL	CDS	2610763	2611167	.	+	0	ID=cds2368;Parent=gene2418;Dbxref=EnsemblGenomes-Gn:azo2370,EnsemblGenomes-Tr:CAL94987,UniProtKB/TrEMBL:A1K832,NCBI_GP:CAL94987.1;Name=CAL94987.1;Note=Hypothetical secreted protein. No domains predicted. No TMHs. Signal Peptide present. Weak homology with hits in the database.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94987.1;transl_table=11
AM406670.1	EMBL	gene	2611545	2611892	.	-	.	ID=gene2419;Name=azo2371;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2371
AM406670.1	EMBL	CDS	2611545	2611892	.	-	0	ID=cds2369;Parent=gene2419;Dbxref=EnsemblGenomes-Gn:azo2371,EnsemblGenomes-Tr:CAL94988,GOA:A1K833,InterPro:IPR001912,InterPro:IPR022801,NCBI_GP:CAL94988.1;Name=CAL94988.1;Note=30S ribosomal protein S4%2C truncated. Homology of aa 1 to 108 with rpsD of N. europaea of 67%25 (sprot|RS4B_NITEU(SRS)). With S5 and S12 plays an important role in translational accuracy (By similarity). Pfam: Ribosomal protein S4/S9 n-terminal domain. no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=partiell 30S ribosomal protein S4%2C truncated;protein_id=CAL94988.1;transl_table=11
AM406670.1	EMBL	gene	2611911	2612165	.	-	.	ID=gene2420;Name=azo2372;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2372
AM406670.1	EMBL	CDS	2611911	2612165	.	-	0	ID=cds2370;Parent=gene2420;Dbxref=EnsemblGenomes-Gn:azo2372,EnsemblGenomes-Tr:CAL94989,UniProtKB/TrEMBL:A1K834,NCBI_GP:CAL94989.1;Name=CAL94989.1;Note=Hypothetical secreted protein. No homology with the data bank. No domains predicted. Signal peptide present. No TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL94989.1;transl_table=11
AM406670.1	EMBL	gene	2612445	2612945	.	+	.	ID=gene2421;Name=fecI;gbkey=Gene;gene=fecI;gene_biotype=protein_coding;locus_tag=azo2373
AM406670.1	EMBL	CDS	2612445	2612945	.	+	0	ID=cds2371;Parent=gene2421;Dbxref=EnsemblGenomes-Gn:azo2373,EnsemblGenomes-Tr:CAL94990,GOA:A1K835,InterPro:IPR007627,InterPro:IPR011991,InterPro:IPR013249,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:A1K835,NCBI_GP:CAL94990.1;Name=CAL94990.1;Note=FecI: belongs to the extracytoplasmic-function (ECF) sigma factor%2C which represent a subgroup of the sigma 70 family. The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. Involved in iron metabolism.%3B~High confidence in function and specificity;gbkey=CDS;gene=fecI;product=putative sigma-70 factor%2C ECF subfamily;protein_id=CAL94990.1;transl_table=11
AM406670.1	EMBL	gene	2612948	2613934	.	+	.	ID=gene2422;Name=fecR;gbkey=Gene;gene=fecR;gene_biotype=protein_coding;locus_tag=azo2374
AM406670.1	EMBL	CDS	2612948	2613934	.	+	0	ID=cds2372;Parent=gene2422;Dbxref=EnsemblGenomes-Gn:azo2374,EnsemblGenomes-Tr:CAL94991,GOA:A1K836,InterPro:IPR006860,InterPro:IPR012373,UniProtKB/TrEMBL:A1K836,NCBI_GP:CAL94991.1;Name=CAL94991.1;Note=FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm. Involved in iron metabolism.%3B~High confidence in function and specificity;gbkey=CDS;gene=fecR;product=putative transmembrane sensor;protein_id=CAL94991.1;transl_table=11
AM406670.1	EMBL	gene	2614041	2616434	.	+	.	ID=gene2423;Name=fecA;gbkey=Gene;gene=fecA;gene_biotype=protein_coding;locus_tag=azo2375
AM406670.1	EMBL	CDS	2614041	2616434	.	+	0	ID=cds2373;Parent=gene2423;Dbxref=EnsemblGenomes-Gn:azo2375,EnsemblGenomes-Tr:CAL94992,GOA:A1K837,InterPro:IPR000531,InterPro:IPR011662,InterPro:IPR012910,UniProtKB/TrEMBL:A1K837,NCBI_GP:CAL94992.1;Name=CAL94992.1;Note=Ferric-citrate outer membrane receptor%2CFecA.Involved in the recognition and internalization of ferric-citrate in E.coli. SPECIFIC RECEPTOR FOR THE SIDEROPHORE FERRIC PSEUDOBACTIN 358. InterPro: TonB-dependent receptor protein%3B~High confidence in function and specificity;gbkey=CDS;gene=fecA;product=putative ferric-citrate TonB-dependent receptor;protein_id=CAL94992.1;transl_table=11
AM406670.1	EMBL	gene	2616506	2617735	.	+	.	ID=gene2424;Name=azo2376;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2376
AM406670.1	EMBL	CDS	2616506	2617735	.	+	0	ID=cds2374;Parent=gene2424;Dbxref=EnsemblGenomes-Gn:azo2376,EnsemblGenomes-Tr:CAL94993,UniProtKB/TrEMBL:A1K838,NCBI_GP:CAL94993.1;Name=CAL94993.1;Note=Conserved hypothetical membrane protein. Homology to NE0537 of Nitrosomonas europaea of 40%25 (trembl|Q82WX0(SRS)). no domains predicted. signal peptide. 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL94993.1;transl_table=11
AM406670.1	EMBL	gene	2618005	2618457	.	-	.	ID=gene2425;Name=azo2377;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2377
AM406670.1	EMBL	CDS	2618005	2618457	.	-	0	ID=cds2375;Parent=gene2425;Dbxref=EnsemblGenomes-Gn:azo2377,EnsemblGenomes-Tr:CAL94994,GOA:A1K839,InterPro:IPR001763,UniProtKB/TrEMBL:A1K839,NCBI_GP:CAL94994.1;Name=CAL94994.1;Note=Similar to Rhodanese%2C a sulphurtransferase involved in cyanide detoxification. Non-secretory protein. Probable Hypothetical protein RP600.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94994.1;transl_table=11
AM406670.1	EMBL	gene	2618632	2619291	.	+	.	ID=gene2426;Name=azo2378;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2378
AM406670.1	EMBL	CDS	2618632	2619291	.	+	0	ID=cds2376;Parent=gene2426;Dbxref=EnsemblGenomes-Gn:azo2378,EnsemblGenomes-Tr:CAL94995,GOA:A1K840,InterPro:IPR007431,UniProtKB/TrEMBL:A1K840,NCBI_GP:CAL94995.1;Name=CAL94995.1;Note=Hypothetical protein%2C 38%25 identity (50%25 similarity) to TrEMBL%3BQ87X35 Has PF04336%2C Protein of unknown function%2CDUF479%3BIPR007431%2CThis family includes several bacterial proteins of uncharacterised function.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94995.1;transl_table=11
AM406670.1	EMBL	gene	2619273	2620175	.	-	.	ID=gene2427;Name=azo2379;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2379
AM406670.1	EMBL	CDS	2619273	2620175	.	-	0	ID=cds2377;Parent=gene2427;Dbxref=EnsemblGenomes-Gn:azo2379,EnsemblGenomes-Tr:CAL94996,GOA:A1K841,InterPro:IPR011009,InterPro:IPR016477,UniProtKB/TrEMBL:A1K841,NCBI_GP:CAL94996.1;Name=CAL94996.1;Note=Hypothetical protein%2C 44%25 identity (54%25 similarity) to TrEMBL%3BQ82TM9. Has PF01636%3BPhosphotransferase enzyme family%3BIPR002575%2CAPH_trans%3BThis family consists of bacterial antibiotic resistance proteins%2C which confer resistance to various aminoglycosides they include:-aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. Has PF03881%2CFructosamine kinase%3BThis family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterised but probably have a similar or identical function.%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL94996.1;transl_table=11
AM406670.1	EMBL	gene	2620360	2621466	.	+	.	ID=gene2428;Name=azo2380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2380
AM406670.1	EMBL	CDS	2620360	2621466	.	+	0	ID=cds2378;Parent=gene2428;Dbxref=EnsemblGenomes-Gn:azo2380,EnsemblGenomes-Tr:CAL94997,GOA:A1K842,InterPro:IPR001173,InterPro:IPR007267,InterPro:IPR029044,UniProtKB/TrEMBL:A1K842,NCBI_GP:CAL94997.1;Name=CAL94997.1;Note=Glycosyltransferase%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL94997.1;transl_table=11
AM406670.1	EMBL	gene	2621450	2622997	.	+	.	ID=gene2429;Name=azo2381;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2381
AM406670.1	EMBL	CDS	2621450	2622997	.	+	0	ID=cds2379;Parent=gene2429;Dbxref=EnsemblGenomes-Gn:azo2381,EnsemblGenomes-Tr:CAL94998,GOA:A1K843,UniProtKB/TrEMBL:A1K843,NCBI_GP:CAL94998.1;Name=CAL94998.1;Note=Conserved hypothetical protein. Extremely weak homology with hits in the Database spanning the entire length of protein. Has PF02366%2C Dolichyl-phosphate-mannose-protein mannosyltransferase%3B IPR003342%2CGlyco_trans_39:This is a family of Dolichyl-phosphate-mannose-protein mannosyltransferase proteins. These proteins are responsible for O-linked glycosylation of proteins%2C they catalyse the reaction:-Dolichyl phosphate D-mannose + protein <%3D> dolichyl phosphate + O-D-mannosyl-protein. Also in this family is Q94891 Drosophila rotated abdomen protein which is a putative mannosyltransferase. This family appears to be distantly related to STT3. TMHMM2 reporting 2 TMH's present. Signal peptide not present.%3B~Function unclear;gbkey=CDS;product=dolichyl-phosphate-mannose-protein mannosyltransferase;protein_id=CAL94998.1;transl_table=11
AM406670.1	EMBL	gene	2623216	2624124	.	+	.	ID=gene2430;Name=azo2382;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2382
AM406670.1	EMBL	CDS	2623216	2624124	.	+	0	ID=cds2380;Parent=gene2430;Dbxref=EnsemblGenomes-Gn:azo2382,EnsemblGenomes-Tr:CAL94999,UniProtKB/TrEMBL:A1K844,NCBI_GP:CAL94999.1;Name=CAL94999.1;Note=Conserved hypothetical secreted protein. Homology to TdenA01002104 of Thiobacillus denitrificans of 56%25 (gi|52006510|ref|ZP_00333890.1|(NBCI ENTREZ)). No domains predicted. Signal P repoting a signal peptide present. NO TMH being present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL94999.1;transl_table=11
AM406670.1	EMBL	gene	2624136	2624690	.	+	.	ID=gene2431;Name=azo2383;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2383
AM406670.1	EMBL	CDS	2624136	2624690	.	+	0	ID=cds2381;Parent=gene2431;Dbxref=EnsemblGenomes-Gn:azo2383,EnsemblGenomes-Tr:CAL95000,GOA:A1K845,InterPro:IPR007329,UniProtKB/TrEMBL:A1K845,NCBI_GP:CAL95000.1;Name=CAL95000.1;Note=Conserved hypothetical protein. Homology to rsp0720 of R. solanacearum of 43%25 (trembl|Q8XRW1(SRS)). Pfam: FMN_binding domain. This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins. Siganl peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95000.1;transl_table=11
AM406670.1	EMBL	gene	2624734	2625561	.	+	.	ID=gene2432;Name=azo2384;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2384
AM406670.1	EMBL	CDS	2624734	2625561	.	+	0	ID=cds2382;Parent=gene2432;Dbxref=EnsemblGenomes-Gn:azo2384,EnsemblGenomes-Tr:CAL95001,GOA:A1K846,InterPro:IPR003374,InterPro:IPR024932,UniProtKB/TrEMBL:A1K846,NCBI_GP:CAL95001.1;Name=CAL95001.1;Note=Conserved hypothetical ApbE family protein. Homology to so1090 of S. oneidensis of 43%25 (trembl|Q8EHX0). Pfam: ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. no signal. peptide no TMH%3B~Family membership;gbkey=CDS;product=conserved hypothetical ApbE family protein;protein_id=CAL95001.1;transl_table=11
AM406670.1	EMBL	gene	2625563	2626036	.	+	.	ID=gene2433;Name=azo2385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2385
AM406670.1	EMBL	CDS	2625563	2626036	.	+	0	ID=cds2383;Parent=gene2433;Dbxref=EnsemblGenomes-Gn:azo2385,EnsemblGenomes-Tr:CAL95002,UniProtKB/TrEMBL:A1K847,NCBI_GP:CAL95002.1;Name=CAL95002.1;Note=Hypothetical membrane protein. No homology of the entire protein to the data bank. No domains predicted. signal peptide. 3 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95002.1;transl_table=11
AM406670.1	EMBL	gene	2626263	2626706	.	+	.	ID=gene2434;Name=azo2386;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2386
AM406670.1	EMBL	CDS	2626263	2626706	.	+	0	ID=cds2384;Parent=gene2434;Dbxref=EnsemblGenomes-Gn:azo2386,EnsemblGenomes-Tr:CAL95003,InterPro:IPR009936,UniProtKB/TrEMBL:A1K848,NCBI_GP:CAL95003.1;Name=CAL95003.1;Note=Conserved hypothetical membrane protein. Homology to BB4221 of Bordetella bronchiseptica of 32%25 (trembl|Q7WFQ0). Has PF07331%2C Protein of unknown function (DUF1468)%3BIPR009936%3BThis family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Signal peptide. 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95003.1;transl_table=11
AM406670.1	EMBL	gene	2626714	2628201	.	+	.	ID=gene2435;Name=azo2387;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2387
AM406670.1	EMBL	CDS	2626714	2628201	.	+	0	ID=cds2385;Parent=gene2435;Dbxref=EnsemblGenomes-Gn:azo2387,EnsemblGenomes-Tr:CAL95004,InterPro:IPR002823,UniProtKB/TrEMBL:A1K849,NCBI_GP:CAL95004.1;Name=CAL95004.1;Note=Conserved hypothetical membrane protein. Homology to an orf of R. palustris of 63%25 (tremblnew|CAE27761(SRS)). Has PF01970%2C Integral membrane protein DUF112%3BIPR002823:Members of this prokaryotic family have no known function. no signal peptide. 10 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95004.1;transl_table=11
AM406670.1	EMBL	gene	2628235	2628873	.	+	.	ID=gene2436;Name=azo2388;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2388
AM406670.1	EMBL	CDS	2628235	2628873	.	+	0	ID=cds2386;Parent=gene2436;Dbxref=EnsemblGenomes-Gn:azo2388,EnsemblGenomes-Tr:CAL95005,UniProtKB/TrEMBL:A1K850,NCBI_GP:CAL95005.1;Name=CAL95005.1;Note=Hypothetical membrane protein. no homology of the entire protein to the data bank. no domain predicted. no signal peptide. 4 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95005.1;transl_table=11
AM406670.1	EMBL	gene	2628910	2629125	.	-	.	ID=gene2437;Name=ssuF;gbkey=Gene;gene=ssuF;gene_biotype=protein_coding;locus_tag=azo2389
AM406670.1	EMBL	CDS	2628910	2629125	.	-	0	ID=cds2387;Parent=gene2437;Dbxref=EnsemblGenomes-Gn:azo2389,EnsemblGenomes-Tr:CAL95006,GOA:A1K851,InterPro:IPR004606,InterPro:IPR005116,InterPro:IPR008995,UniProtKB/TrEMBL:A1K851,NCBI_GP:CAL95006.1;Name=CAL95006.1;Note=Probable Molybdenum-pterin binding protein II. Organosulfonate utilization protein SsuF InterPro: Molybdenum-pterin binding domain TIGRFAM: Mop: molybdenum-pterin binding domain%3B~High confidence in function and specificity;gbkey=CDS;gene=ssuF;product=molybdenum-pterin binding protein;protein_id=CAL95006.1;transl_table=11
AM406670.1	EMBL	gene	2629358	2629729	.	-	.	ID=gene2438;Name=azo2390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2390
AM406670.1	EMBL	CDS	2629358	2629729	.	-	0	ID=cds2388;Parent=gene2438;Dbxref=EnsemblGenomes-Gn:azo2390,EnsemblGenomes-Tr:CAL95007,InterPro:IPR016772,UniProtKB/TrEMBL:A1K852,NCBI_GP:CAL95007.1;Name=CAL95007.1;Note=Conserved hypothetical protein. Homology to Daro03001711 of Dechloromonas aromatica of 36%25 (gi|53730477|ref|ZP_00348804.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95007.1;transl_table=11
AM406670.1	EMBL	gene	2630041	2631066	.	+	.	ID=gene2439;Name=tauA;gbkey=Gene;gene=tauA;gene_biotype=protein_coding;locus_tag=azo2391
AM406670.1	EMBL	CDS	2630041	2631066	.	+	0	ID=cds2389;Parent=gene2439;Dbxref=EnsemblGenomes-Gn:azo2391,EnsemblGenomes-Tr:CAL95008,GOA:A1K853,InterPro:IPR001638,UniProtKB/TrEMBL:A1K853,NCBI_GP:CAL95008.1;Name=CAL95008.1;Note=Part of the ABC transporter complex tauABC involved in taurine as a sulfur source import. Similar to the putative aliphatic sulfonates periplasmic-binding protein tauA in E.coli. Probably also involved in nitrate and bicarbonate transport.%3B~Function unclear;gbkey=CDS;gene=tauA;product=putative sulfonate transport system%2C periplasmic component;protein_id=CAL95008.1;transl_table=11
AM406670.1	EMBL	gene	2631101	2631892	.	+	.	ID=gene2440;Name=tauB;gbkey=Gene;gene=tauB;gene_biotype=protein_coding;locus_tag=azo2392
AM406670.1	EMBL	CDS	2631101	2631892	.	+	0	ID=cds2390;Parent=gene2440;Dbxref=EnsemblGenomes-Gn:azo2392,EnsemblGenomes-Tr:CAL95009,GOA:A1K854,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K854,NCBI_GP:CAL95009.1;Name=CAL95009.1;Note=Part of the ABC transporter complex tauABC involved in taurine import as a sulfur source.Probably responsible for energy coupling to the transport system.Similar to the aliphatic sulfonate transport membrane protein%2C tauB in E.coli. Probably also involved in nitrate and bicarbonate transport.%3B~High confidence in function and specificity;gbkey=CDS;gene=tauB;product=putative sulfonate transport system%2C ATP-binding protein;protein_id=CAL95009.1;transl_table=11
AM406670.1	EMBL	gene	2632087	2632899	.	+	.	ID=gene2441;Name=tauC;gbkey=Gene;gene=tauC;gene_biotype=protein_coding;locus_tag=azo2393
AM406670.1	EMBL	CDS	2632087	2632899	.	+	0	ID=cds2391;Parent=gene2441;Dbxref=EnsemblGenomes-Gn:azo2393,EnsemblGenomes-Tr:CAL95010,GOA:A1K855,InterPro:IPR000515,UniProtKB/TrEMBL:A1K855,NCBI_GP:CAL95010.1;Name=CAL95010.1;Note=Part of the ABC transporter complex tauABC involved in taurine import as sulfur source. Probably responsible for the translocation of the substrate across the membrane.Similar to the aliphatic sulfonate permease protein%2C tauC in E.coli. Probably also involved in nitrate and bicarbonate transport.%3B~High confidence in function and specificity;gbkey=CDS;gene=tauC;product=putative sulfonate transport system%2C permease protein;protein_id=CAL95010.1;transl_table=11
AM406670.1	EMBL	gene	2632917	2633645	.	+	.	ID=gene2442;Name=azo2394;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2394
AM406670.1	EMBL	CDS	2632917	2633645	.	+	0	ID=cds2392;Parent=gene2442;Dbxref=EnsemblGenomes-Gn:azo2394,EnsemblGenomes-Tr:CAL95011,InterPro:IPR012336,UniProtKB/TrEMBL:A1K856,NCBI_GP:CAL95011.1;Name=CAL95011.1;Note=Hypothetical membrane protein. Homology to COG2143 from 114 aa to 228 aa. InterPro: Thioredoxin (IPR006662). no signal peptide. 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95011.1;transl_table=11
AM406670.1	EMBL	gene	2633703	2635040	.	+	.	ID=gene2443;Name=phaE;gbkey=Gene;gene=phaE;gene_biotype=protein_coding;locus_tag=azo2395
AM406670.1	EMBL	CDS	2633703	2635040	.	+	0	ID=cds2393;Parent=gene2443;Dbxref=EnsemblGenomes-Gn:azo2395,EnsemblGenomes-Tr:CAL95012,GOA:A1K857,InterPro:IPR000873,InterPro:IPR028154,UniProtKB/TrEMBL:A1K857,NCBI_GP:CAL95012.1;Name=CAL95012.1;Note=Phenylacetate-coenzyme A ligase (PA-CoA ligase).Coenzyme F390 synthase. CATALYZES THE ACTIVATION OF PHENYLACETIC ACID TO PHENYLACETYL-COA. InterPro: AMP-dependent synthetase and ligase%3B~High confidence in function and specificity;gbkey=CDS;gene=phaE;product=Phenylacetate--CoA ligase;protein_id=CAL95012.1;transl_table=11
AM406670.1	EMBL	gene	2635527	2637713	.	+	.	ID=gene2444;Name=azo2396;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2396
AM406670.1	EMBL	CDS	2635527	2637713	.	+	0	ID=cds2394;Parent=gene2444;Dbxref=EnsemblGenomes-Gn:azo2396,EnsemblGenomes-Tr:CAL95013,GOA:A1K858,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1K858,NCBI_GP:CAL95013.1;Name=CAL95013.1;Note=Putative outer membrane TonB-dependent receptor protein. 43%25 TonB_receptor. Pfam:PF00593%3B TonB_dep_Rec%3B 1.%3B~Function unclear;gbkey=CDS;product=putative TonB-dependent receptor;protein_id=CAL95013.1;transl_table=11
AM406670.1	EMBL	gene	2637720	2638544	.	-	.	ID=gene2445;Name=azo2397;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2397
AM406670.1	EMBL	CDS	2637720	2638544	.	-	0	ID=cds2395;Parent=gene2445;Dbxref=EnsemblGenomes-Gn:azo2397,EnsemblGenomes-Tr:CAL95014,InterPro:IPR001633,UniProtKB/TrEMBL:A1K859,NCBI_GP:CAL95014.1;Name=CAL95014.1;Note=Conserved hypothetical signaling protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical signaling protein;protein_id=CAL95014.1;transl_table=11
AM406670.1	EMBL	gene	2638757	2639365	.	+	.	ID=gene2446;Name=azo2398;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2398
AM406670.1	EMBL	CDS	2638757	2639365	.	+	0	ID=cds2396;Parent=gene2446;Dbxref=EnsemblGenomes-Gn:azo2398,EnsemblGenomes-Tr:CAL95015,GOA:A1K860,InterPro:IPR010662,InterPro:IPR029058,UniProtKB/TrEMBL:A1K860,NCBI_GP:CAL95015.1;Name=CAL95015.1;Note=Conserved hypothetical protein. Homology to rsc1344 of R. solanacearum of 42%25 (trembl|Q8XZQ1). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95015.1;transl_table=11
AM406670.1	EMBL	gene	2639458	2640438	.	+	.	ID=gene2447;Name=cysK;gbkey=Gene;gene=cysK;gene_biotype=protein_coding;locus_tag=azo2399
AM406670.1	EMBL	CDS	2639458	2640438	.	+	0	ID=cds2397;Parent=gene2447;Dbxref=EnsemblGenomes-Gn:azo2399,EnsemblGenomes-Tr:CAL95016,GOA:A1K861,InterPro:IPR001216,InterPro:IPR001926,InterPro:IPR005856,InterPro:IPR005859,UniProtKB/TrEMBL:A1K861,NCBI_GP:CAL95016.1;Name=CAL95016.1;Note=Cysteine synthase A%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=cysK;product=cysteine synthase A;protein_id=CAL95016.1;transl_table=11
AM406670.1	EMBL	gene	2640828	2643044	.	+	.	ID=gene2448;Name=azo2400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2400
AM406670.1	EMBL	CDS	2640828	2643044	.	+	0	ID=cds2398;Parent=gene2448;Dbxref=EnsemblGenomes-Gn:azo2400,EnsemblGenomes-Tr:CAL95017,GOA:A1K862,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1K862,NCBI_GP:CAL95017.1;Name=CAL95017.1;Note=Putative TonB outer membrane receptor protein.31%25 TonB_boxC. Pfam:PF00593%3B TonB_dep_Rec%3B 1. Signal peptide present.%3B~Function unclear;gbkey=CDS;product=putative TonB-dependent receptor protein;protein_id=CAL95017.1;transl_table=11
AM406670.1	EMBL	gene	2643054	2643623	.	+	.	ID=gene2449;Name=azo2401;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2401
AM406670.1	EMBL	CDS	2643054	2643623	.	+	0	ID=cds2399;Parent=gene2449;Dbxref=EnsemblGenomes-Gn:azo2401,EnsemblGenomes-Tr:CAL95018,InterPro:IPR025293,UniProtKB/TrEMBL:A1K863,NCBI_GP:CAL95018.1;Name=CAL95018.1;Note=Conserved hypothetical secreted protein. Homology to rsp0812 of R. solanacearum of 30%25 (trembl|Q8XRL9). no damians predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95018.1;transl_table=11
AM406670.1	EMBL	gene	2643620	2646658	.	+	.	ID=gene2450;Name=barA;gbkey=Gene;gene=barA;gene_biotype=protein_coding;locus_tag=azo2402
AM406670.1	EMBL	CDS	2643620	2646658	.	+	0	ID=cds2400;Parent=gene2450;Dbxref=EnsemblGenomes-Gn:azo2402,EnsemblGenomes-Tr:CAL95019,GOA:A1K864,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,InterPro:IPR011006,UniProtKB/TrEMBL:A1K864,NCBI_GP:CAL95019.1;Name=CAL95019.1;Note=Putative sensor-regulator protein%2C%3B~Specificity unclear;gbkey=CDS;gene=barA;product=putative sensor-regulator protein;protein_id=CAL95019.1;transl_table=11
AM406670.1	EMBL	gene	2646655	2647560	.	+	.	ID=gene2451;Name=wspR2;gbkey=Gene;gene=wspR2;gene_biotype=protein_coding;locus_tag=azo2403
AM406670.1	EMBL	CDS	2646655	2647560	.	+	0	ID=cds2401;Parent=gene2451;Dbxref=EnsemblGenomes-Gn:azo2403,EnsemblGenomes-Tr:CAL95020,GOA:A1K865,InterPro:IPR000160,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR029787,UniProtKB/TrEMBL:A1K865,NCBI_GP:CAL95020.1;Name=CAL95020.1;Note=Probable two-component response regulator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=wspR2;product=probable two-component response regulator;protein_id=CAL95020.1;transl_table=11
AM406670.1	EMBL	gene	2647703	2649856	.	+	.	ID=gene2452;Name=azo2404;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2404
AM406670.1	EMBL	CDS	2647703	2649856	.	+	0	ID=cds2402;Parent=gene2452;Dbxref=EnsemblGenomes-Gn:azo2404,EnsemblGenomes-Tr:CAL95021,UniProtKB/TrEMBL:A1K866,NCBI_GP:CAL95021.1;Name=CAL95021.1;Note=Hypothetical secreted protein. no homology of the entire protein to the data bank. no domains predicted. signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95021.1;transl_table=11
AM406670.1	EMBL	gene	2649868	2650305	.	-	.	ID=gene2453;Name=ohr;gbkey=Gene;gene=ohr;gene_biotype=protein_coding;locus_tag=azo2405
AM406670.1	EMBL	CDS	2649868	2650305	.	-	0	ID=cds2403;Parent=gene2453;Dbxref=EnsemblGenomes-Gn:azo2405,EnsemblGenomes-Tr:CAL95022,GOA:A1K867,InterPro:IPR003718,InterPro:IPR015946,InterPro:IPR019953,UniProtKB/TrEMBL:A1K867,NCBI_GP:CAL95022.1;Name=CAL95022.1;Note=Probable organic hydroperoxide resistance protein. Homology to ohr of X. campestris of 50%25 (SWISSPROT:OHR_XANAC). Organic hydroperoxide detoxification protein. Confers increased resistance to tert-butyl hydroperoxide killing. InterPro: OsmC-like protein (IPR003718) Pfam: OsmC-like protein no signal peptide no TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=ohr;product=probable organic hydroperoxide resistance protein;protein_id=CAL95022.1;transl_table=11
AM406670.1	EMBL	gene	2650430	2654014	.	-	.	ID=gene2454;Name=azo2406;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2406
AM406670.1	EMBL	CDS	2650430	2654014	.	-	0	ID=cds2404;Parent=gene2454;Dbxref=EnsemblGenomes-Gn:azo2406,EnsemblGenomes-Tr:CAL95023,GOA:A1K868,InterPro:IPR002869,InterPro:IPR012110,InterPro:IPR019752,InterPro:IPR029061,UniProtKB/TrEMBL:A1K868,NCBI_GP:CAL95023.1;Name=CAL95023.1;Note=Conserved hypothetical pyruvate ferredoxin/flavodoxin oxidoreductase. Homology to bb4375 of B. bronchiseptica (trembl|Q7WFA5). CATALYZES THE FERREDOXIN-DEPENDENT OXIDATIVE DECARBOXYLATION OF ARYLPYRUVATES (BY SIMILARITY). Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical pyruvate ferredoxin/flavodoxin oxidoreductase;protein_id=CAL95023.1;transl_table=11
AM406670.1	EMBL	gene	2654233	2654715	.	+	.	ID=gene2455;Name=bkdR;gbkey=Gene;gene=bkdR;gene_biotype=protein_coding;locus_tag=azo2407
AM406670.1	EMBL	CDS	2654233	2654715	.	+	0	ID=cds2405;Parent=gene2455;Dbxref=EnsemblGenomes-Gn:azo2407,EnsemblGenomes-Tr:CAL95024,GOA:A1K869,InterPro:IPR000485,InterPro:IPR011008,InterPro:IPR011991,InterPro:IPR019887,InterPro:IPR019888,UniProtKB/TrEMBL:A1K869,NCBI_GP:CAL95024.1;Name=CAL95024.1;Note=Bkd operon transcriptional regulator%2C similarity to SWISSPROT: (38%25 Pseudomonas putida%2C bkd operon transcriptional regulator BdkR) InterPro: IPR000485 HTH_AsnC_lrp. Pfam: PF01037 AsnC family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=bkdR;product=bkd operon transcriptional regulator;protein_id=CAL95024.1;transl_table=11
AM406670.1	EMBL	gene	2654882	2657899	.	+	.	ID=gene2456;Name=azo2408;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2408
AM406670.1	EMBL	CDS	2654882	2657899	.	+	0	ID=cds2406;Parent=gene2456;Dbxref=EnsemblGenomes-Gn:azo2408,EnsemblGenomes-Tr:CAL95025,GOA:A1K870,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003018,InterPro:IPR021796,InterPro:IPR029016,InterPro:IPR029787,UniProtKB/TrEMBL:A1K870,NCBI_GP:CAL95025.1;Name=CAL95025.1;Note=Hypothetical sensor protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=hypothetical sensor protein;protein_id=CAL95025.1;transl_table=11
AM406670.1	EMBL	gene	2657913	2659973	.	-	.	ID=gene2457;Name=azo2409;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2409
AM406670.1	EMBL	CDS	2657913	2659973	.	-	0	ID=cds2407;Parent=gene2457;Dbxref=EnsemblGenomes-Gn:azo2409,EnsemblGenomes-Tr:CAL95026,GOA:A1K871,InterPro:IPR001734,InterPro:IPR018212,InterPro:IPR019899,UniProtKB/TrEMBL:A1K871,NCBI_GP:CAL95026.1;Name=CAL95026.1;Note=Conserved hypothetical sodium:solute sympoter. Homology to bb3915 of B. bronchiseptica of 57%25 (trembl|Q7WCM0). Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force%2C SMF) is used to drive solute accumulation against a concentration gradient. The solutes transported may be sugars%2C amino acids%2C nucleosides%2C inositols%2C vitamins%2Curea or anions%2C depending on the system. Tigrfam: sss: SSS sodium solute transporter superfamily. Pfam: Sodium:solute symporter family. signal peptide. 13 TMHS%3B~Family membership;gbkey=CDS;product=conserved hypothetical sodium:solute sympoter;protein_id=CAL95026.1;transl_table=11
AM406670.1	EMBL	gene	2660014	2662218	.	-	.	ID=gene2458;Name=azo2410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2410
AM406670.1	EMBL	CDS	2660014	2662218	.	-	0	ID=cds2408;Parent=gene2458;Dbxref=EnsemblGenomes-Gn:azo2410,EnsemblGenomes-Tr:CAL95027,GOA:A1K872,InterPro:IPR000014,InterPro:IPR006054,InterPro:IPR006055,InterPro:IPR012337,InterPro:IPR013520,UniProtKB/TrEMBL:A1K872,NCBI_GP:CAL95027.1;Name=CAL95027.1;Note=DNA polymerase III epsilon chain-like protein (EC 2.7.7.7). DNA POLYMERASE III IS A COMPLEX MULTICHAIN ENZYME RESPONSIBLE FOR MOST OF THE REPLICATIVE SYNTHESIS IN BACTERIA. THE EPSILON SUBUNIT CONTAIN THE EDITING FUNCTION AND IS A PROOFREADING 3-5 EXONUCLEASE (BY SIMILARITY). dnaq: DNA polymerase III epsilon sub%3B~Family membership;gbkey=CDS;product=DNA polymerase III epsilon chain-like protein;protein_id=CAL95027.1;transl_table=11
AM406670.1	EMBL	gene	2662346	2662720	.	-	.	ID=gene2459;Name=yycF;gbkey=Gene;gene=yycF;gene_biotype=protein_coding;locus_tag=azo2411
AM406670.1	EMBL	CDS	2662346	2662720	.	-	0	ID=cds2409;Parent=gene2459;Dbxref=EnsemblGenomes-Gn:azo2411,EnsemblGenomes-Tr:CAL95028,GOA:A1K873,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1K873,NCBI_GP:CAL95028.1;Name=CAL95028.1;Note=Transcriptional regulatory protein yycF. Member of the two-component regulatory system yycG/yycF involved in the regulation of the ftsAZ operon. Binds to the ftsAZ P1 promoter sequence. Similar to SWISSPROT: sprot|YYCF_BACSU (50%25 Bacillus subtilis%2C transcriptional regulatory protein YycF) / sprot|PHOP_BACSU (47%25 Bacillus subtilis%2C alkaline phosphatase synthesis transcriptional regulatory protein PhoP) InterPro: IPR001789 Response_reg. Pfam: PF00072 Response_reg.%3B~Specificity unclear;gbkey=CDS;gene=yycF;product=transcriptional regulatory protein;protein_id=CAL95028.1;transl_table=11
AM406670.1	EMBL	gene	2662752	2665499	.	-	.	ID=gene2460;Name=azo2412;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2412
AM406670.1	EMBL	CDS	2662752	2665499	.	-	0	ID=cds2410;Parent=gene2460;Dbxref=EnsemblGenomes-Gn:azo2412,EnsemblGenomes-Tr:CAL95029,GOA:A1K874,InterPro:IPR001734,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1K874,NCBI_GP:CAL95029.1;Name=CAL95029.1;Note=Sensor histidine kinase mtrB (EC 2.7.3.-). Member of the two-component regulatory system mtrA/mtrB. Seems to function as a membrane-associated protein kinase that phosphorylates mtrA in response to environmental signals (By similarity). TREMBLnew:AAS80811%3B TREMBL:Q8PEZ5%2C 42%25 identity%2C 59%25 similarity%3B Pfam: Histidine kinase _%2CPhosphoacceptor domain. TIGRFAM: sss: sodium solute transporter sup. TMHMM predicted transmembrane helices. sss: SSS sodium solute transporter sup%3B~Specificity unclear;gbkey=CDS;product=probable two-component system sensor protein;protein_id=CAL95029.1;transl_table=11
AM406670.1	EMBL	gene	2665499	2665696	.	-	.	ID=gene2461;Name=azo2413;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2413
AM406670.1	EMBL	CDS	2665499	2665696	.	-	0	ID=cds2411;Parent=gene2461;Dbxref=EnsemblGenomes-Gn:azo2413,EnsemblGenomes-Tr:CAL95030,UniProtKB/TrEMBL:A1K875,NCBI_GP:CAL95030.1;Name=CAL95030.1;Note=Conserved hypothetical membrane protein. Homolgy to ttc0464 of T. thermophilus of 46%25 (tremble:Q72K63). no domains predicted. singal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95030.1;transl_table=11
AM406670.1	EMBL	gene	2665962	2667926	.	-	.	ID=gene2462;Name=acsB;gbkey=Gene;gene=acsB;gene_biotype=protein_coding;locus_tag=azo2414
AM406670.1	EMBL	CDS	2665962	2667926	.	-	0	ID=cds2412;Parent=gene2462;Dbxref=EnsemblGenomes-Gn:azo2414,EnsemblGenomes-Tr:CAL95031,GOA:A1K876,InterPro:IPR000873,InterPro:IPR011904,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:A1K876,NCBI_GP:CAL95031.1;Name=CAL95031.1;Note=Catalytic activity :- atp + acetate + coa %3D amp + diphosphate + acetyl-coa. Entry name SWISSPROT:ACSA_ECOLI Prim. accession # P27550 Identities %3D 330/633 (52%25) InterPro IPR000873%3B AMP-bind. Pfam PF00501%3B AMP-binding%3B 1. Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=acsB;product=probable acetyl-coenzyme A synthetase;protein_id=CAL95031.1;transl_table=11
AM406670.1	EMBL	gene	2668208	2669899	.	+	.	ID=gene2463;Name=fumB;gbkey=Gene;gene=fumB;gene_biotype=protein_coding;locus_tag=azo2415
AM406670.1	EMBL	CDS	2668208	2669899	.	+	0	ID=cds2413;Parent=gene2463;Dbxref=EnsemblGenomes-Gn:azo2415,EnsemblGenomes-Tr:CAL95032,GOA:A1K877,InterPro:IPR004646,InterPro:IPR004647,InterPro:IPR007110,InterPro:IPR011167,UniProtKB/TrEMBL:A1K877,NCBI_GP:CAL95032.1;Name=CAL95032.1;Note=Putative fumarate hydratase. Homology to fumB of E. coli of 25%25 (sprot|FUMB_ECOLI). It functions in the generation of fumarate for use as an anaerobic electron acceptor. Tigrfam: ttdA_fumA_fumB: hydro-lyases Fe-S type%2Ctartrate/fumarate subfamily%2C alpha region%3B ttdB_fumA_fumB: hydro-lyases Fe-S type%2C tartrate/fumarate subfamily%2C beta region no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=fumB;product=putative fumarate hydratase;protein_id=CAL95032.1;transl_table=11
AM406670.1	EMBL	gene	2669865	2670155	.	-	.	ID=gene2464;Name=azo2416;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2416
AM406670.1	EMBL	CDS	2669865	2670155	.	-	0	ID=cds2414;Parent=gene2464;Dbxref=EnsemblGenomes-Gn:azo2416,EnsemblGenomes-Tr:CAL95033,UniProtKB/TrEMBL:A1K878,NCBI_GP:CAL95033.1;Name=CAL95033.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95033.1;transl_table=11
AM406670.1	EMBL	gene	2670306	2671496	.	-	.	ID=gene2465;Name=nnrS;gbkey=Gene;gene=nnrS;gene_biotype=protein_coding;locus_tag=azo2417
AM406670.1	EMBL	CDS	2670306	2671496	.	-	0	ID=cds2415;Parent=gene2465;Dbxref=EnsemblGenomes-Gn:azo2417,EnsemblGenomes-Tr:CAL95034,InterPro:IPR010266,UniProtKB/TrEMBL:A1K879,NCBI_GP:CAL95034.1;Name=CAL95034.1;Note=NnrS is a putative heme-Cu protein and a member of the short-chain dehydrogenase family%2C probably involved in the nitric oxide metabolism. Genes encoding putative orthologues of NnrS are sometimes but not always found in bacteria encoding nitrite and/or nitric oxide reductase. 40%25 NnrS. TMhelix:10 Pfam:PF05940%3B NnrS%3B 1.%3B~Function unclear;gbkey=CDS;gene=nnrS;product=putative heme-Cu-containing membrane protein;protein_id=CAL95034.1;transl_table=11
AM406670.1	EMBL	gene	2671716	2672762	.	+	.	ID=gene2466;Name=gapB;gbkey=Gene;gene=gapB;gene_biotype=protein_coding;locus_tag=azo2418
AM406670.1	EMBL	CDS	2671716	2672762	.	+	0	ID=cds2416;Parent=gene2466;Dbxref=EnsemblGenomes-Gn:azo2418,EnsemblGenomes-Tr:CAL95035,GOA:A1K880,InterPro:IPR016040,InterPro:IPR020828,InterPro:IPR020829,InterPro:IPR020831,UniProtKB/TrEMBL:A1K880,NCBI_GP:CAL95035.1;Name=CAL95035.1;Note=D-erythrose 4-phosphate dehydrogenase(E4PDH)%2C GapB protein. Could play a role in pyridoxal 5-phosphate synthesis.Involved in the reaction: d-erythrose 4-phosphate + nad(+) %3D 4-phosphoerythronate + nadh. 51%25 E4PD_g-proteo.IPR000173%3B GAP_dhdrogenase. Pfam:PF00044%3B gpdh%3B 1.PF02800%3B gpdh_C%3B 1. TIGR00274: glucokinase regulator-relate. TIGRFAMs:TIGR01532%3B E4PD_g-proteo%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=gapB;product=putative D-erythrose 4-phosphate dehydrogenase;protein_id=CAL95035.1;transl_table=11
AM406670.1	EMBL	gene	2672763	2673671	.	-	.	ID=gene2467;Name=nahR1;gbkey=Gene;gene=nahR1;gene_biotype=protein_coding;locus_tag=azo2419
AM406670.1	EMBL	CDS	2672763	2673671	.	-	0	ID=cds2417;Parent=gene2467;Dbxref=EnsemblGenomes-Gn:azo2419,EnsemblGenomes-Tr:CAL95036,GOA:A1K881,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K881,NCBI_GP:CAL95036.1;Name=CAL95036.1;Note=LysR-type transcriptional regulator NahR. Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes. Belongs to the LysR family of transcriptional regulators. Similar to SWISSPROT: sprot|NAHR_PSEPU (40%25 Pseudomonas putida%2C hth-type transcriptional activator NahR) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2C lysR family. HTH reporting nucleic acid binding motif.%3B~Specificity unclear;gbkey=CDS;gene=nahR1;product=putative LysR-type transcriptional regulator NahR;protein_id=CAL95036.1;transl_table=11
AM406670.1	EMBL	gene	2673841	2674878	.	+	.	ID=gene2468;Name=nagI;gbkey=Gene;gene=nagI;gene_biotype=protein_coding;locus_tag=azo2420
AM406670.1	EMBL	CDS	2673841	2674878	.	+	0	ID=cds2418;Parent=gene2468;Dbxref=EnsemblGenomes-Gn:azo2420,EnsemblGenomes-Tr:CAL95037,GOA:A1K882,InterPro:IPR011051,InterPro:IPR013096,InterPro:IPR014710,UniProtKB/TrEMBL:A1K882,NCBI_GP:CAL95037.1;Name=CAL95037.1;Note=Involved in catabolism of naphthalene via gentisate to fumarate and pyruvate. NagI is a gentisate 1%2C2-dioxygenase which converts gentisate to maleylpyruvate. Similar to TREMBL:O86041 (66%25 identity)%3B TREMBL:Q8X655 (30%25 identity)%3B TREMBL:Q8Y0F7 (33%25 identity).%3B~High confidence in function and specificity;gbkey=CDS;gene=nagI;product=Gentisate 1%2C2-dioxygenase;protein_id=CAL95037.1;transl_table=11
AM406670.1	EMBL	gene	2674933	2675643	.	+	.	ID=gene2469;Name=nagK;gbkey=Gene;gene=nagK;gene_biotype=protein_coding;locus_tag=azo2421
AM406670.1	EMBL	CDS	2674933	2675643	.	+	0	ID=cds2419;Parent=gene2469;Dbxref=EnsemblGenomes-Gn:azo2421,EnsemblGenomes-Tr:CAL95038,GOA:A1K883,InterPro:IPR002529,InterPro:IPR011234,UniProtKB/TrEMBL:A1K883,NCBI_GP:CAL95038.1;Name=CAL95038.1;Note=Involved in catabolism of naphthalene via gentisate to fumarate and pyruvate. NagK is a fumarylpyruvate hydrolase which hydrolyzes fumarylpyruvate to fumarate and pyruvate. Similar to TREMBL:O86042 (67%25 identity)%3B TREMBL:O07877 (63%25 identity)%3B TREMBL:Q8G387 (50%25 identity). Pfam (PF01557): Fumarylacetoacetate (FAA) hydrolase family.%3B~High confidence in function and specificity;gbkey=CDS;gene=nagK;product=fumarylpyruvate hydrolase;protein_id=CAL95038.1;transl_table=11
AM406670.1	EMBL	gene	2675686	2676879	.	+	.	ID=gene2470;Name=nahG;gbkey=Gene;gene=nahG;gene_biotype=protein_coding;locus_tag=azo2422
AM406670.1	EMBL	CDS	2675686	2676879	.	+	0	ID=cds2420;Parent=gene2470;Dbxref=EnsemblGenomes-Gn:azo2422,EnsemblGenomes-Tr:CAL95039,GOA:A1K884,InterPro:IPR002938,InterPro:IPR003042,UniProtKB/TrEMBL:A1K884,NCBI_GP:CAL95039.1;Name=CAL95039.1;Note=Salicylate hydroxylase (EC 1.14.13.1) (Salicylate 1-monooxygenase). Similar to TREMBL:Q8Z5B1 (62%25 identity)%3B TREMBL:Q8X657 (62%25 identity)%3B TREMBL:Q8ZNM3 (62%25 identity). Pfam (PF01360): Monooxygenase. TMHMM reporting one transmembrane helix.%3B~High confidence in function and specificity;gbkey=CDS;gene=nahG;product=putative salicylate 1-monooxygenase;protein_id=CAL95039.1;transl_table=11
AM406670.1	EMBL	gene	2676985	2677626	.	+	.	ID=gene2471;Name=nagL1;gbkey=Gene;gene=nagL1;gene_biotype=protein_coding;locus_tag=azo2423
AM406670.1	EMBL	CDS	2676985	2677626	.	+	0	ID=cds2421;Parent=gene2471;Dbxref=EnsemblGenomes-Gn:azo2423,EnsemblGenomes-Tr:CAL95040,GOA:A1K885,InterPro:IPR004045,InterPro:IPR005955,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:A1K885,NCBI_GP:CAL95040.1;Name=CAL95040.1;Note=maleylpyruvate isomerase. Homology to nogL of Ralstonia sp U of 73%25 (AAD12621) NagL is a reduced glutathione-dependent maleylpyruvate isomerase catalyzing the isomerization of maleylpyruvate to fumarylpyruvate. InterPro: Glutathione S-transferase N terminus (IPR004045) Pfam: Glutathione S-transferase%2C N-terminale domaine no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=nagL1;product=maleylpyruvate isomerase;protein_id=CAL95040.1;transl_table=11
AM406670.1	EMBL	gene	2677699	2678685	.	+	.	ID=gene2472;Name=dctP3;gbkey=Gene;gene=dctP3;gene_biotype=protein_coding;locus_tag=azo2424
AM406670.1	EMBL	CDS	2677699	2678685	.	+	0	ID=cds2422;Parent=gene2472;Dbxref=EnsemblGenomes-Gn:azo2424,EnsemblGenomes-Tr:CAL95041,GOA:A1K886,InterPro:IPR004682,InterPro:IPR018389,UniProtKB/TrEMBL:A1K886,NCBI_GP:CAL95041.1;Name=CAL95041.1;Note=TRAP-dicarboxylate transporter. Binds c4-dicarboxylates%3B part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 23%25 TRAP_transptDctP. Pfam:PF03480%3B SBP_bac_7%3B 1. TIGRFAMs:TIGR00787%3B dctP%3B 1. Signal peptide: present.%3B~Specificity unclear;gbkey=CDS;gene=dctP3;product=putative C4-dicarboxylate-binding periplasmic protein;protein_id=CAL95041.1;transl_table=11
AM406670.1	EMBL	gene	2679037	2679540	.	+	.	ID=gene2473;Name=dctQ4;gbkey=Gene;gene=dctQ4;gene_biotype=protein_coding;locus_tag=azo2425
AM406670.1	EMBL	CDS	2679037	2679540	.	+	0	ID=cds2423;Parent=gene2473;Dbxref=EnsemblGenomes-Gn:azo2425,EnsemblGenomes-Tr:CAL95042,InterPro:IPR007387,UniProtKB/TrEMBL:A1K887,NCBI_GP:CAL95042.1;Name=CAL95042.1;Note=TRAP-type C4-dicarboxylate transport system%2C small permease component. The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 22%25 DctM.IPR007387%3B DctQ.IPR000252%3B DedA.IPR004681%3B TRAP_transptDctM. Pfam:PF06808%3B DctM%3B 1.PF04290%3B DctQ%3B 1.PF00597%3B DedA%3B 1. TIGRFAMs:TIGR00786%3B dctM%3B 1.%3B~Specificity unclear;gbkey=CDS;gene=dctQ4;product=putative TRAP-type C4-dicarboxylate transport system%2C small permease component;protein_id=CAL95042.1;transl_table=11
AM406670.1	EMBL	gene	2679537	2680814	.	+	.	ID=gene2474;Name=dctM4;gbkey=Gene;gene=dctM4;gene_biotype=protein_coding;locus_tag=azo2426
AM406670.1	EMBL	CDS	2679537	2680814	.	+	0	ID=cds2424;Parent=gene2474;Dbxref=EnsemblGenomes-Gn:azo2426,EnsemblGenomes-Tr:CAL95043,GOA:A1K888,InterPro:IPR004681,InterPro:IPR010656,UniProtKB/TrEMBL:A1K888,NCBI_GP:CAL95043.1;Name=CAL95043.1;Note=Similar to a putative large integral C4-dicarboxylate membrane transport protein from W. succinogenes.DctM: TRAP dicarboxylate transporter. TREMBL:Q9ZEJ2 InterPro:IPR010656%3B DctM.IPR000252%3B DedA.IPR000524%3B HTH_GntR.IPR004681%3B TRAP_transptDctM. Pfam:PF06808%3B DctM%3B 1.PF00597%3B DedA%3B 1. TIGRFAMs:TIGR00786%3B dctM%3B 1. TMHelix: 12. Signal peptide:present.%3B~Specificity unclear;gbkey=CDS;gene=dctM4;product=putative TRAP-type C4-dicarboxylate transport system%2C large permease;protein_id=CAL95043.1;transl_table=11
AM406670.1	EMBL	gene	2680831	2681421	.	-	.	ID=gene2475;Name=azo2427;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2427
AM406670.1	EMBL	CDS	2680831	2681421	.	-	0	ID=cds2425;Parent=gene2475;Dbxref=EnsemblGenomes-Gn:azo2427,EnsemblGenomes-Tr:CAL95044,InterPro:IPR007138,InterPro:IPR011008,UniProtKB/TrEMBL:A1K889,NCBI_GP:CAL95044.1;Name=CAL95044.1;Note=Conserved hypothetical membrane protein. Homology to BB1720 of Bordetella bronchiseptica of 32%25 (trembl|Q7WLM5). Has PF03992%2C Antibiotic biosynthesis monooxygenase%3BIPR007138%3BThis domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 (Q9X9W3) is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue. TMHMM2 reporting 2 TMH's Present. No Signal Peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95044.1;transl_table=11
AM406670.1	EMBL	gene	2681551	2682474	.	-	.	ID=gene2476;Name=azo2428;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2428
AM406670.1	EMBL	CDS	2681551	2682474	.	-	0	ID=cds2426;Parent=gene2476;Dbxref=EnsemblGenomes-Gn:azo2428,EnsemblGenomes-Tr:CAL95045,InterPro:IPR025737,UniProtKB/TrEMBL:A1K890,NCBI_GP:CAL95045.1;Name=CAL95045.1;Note=Conserved hypothetical secreted protein. Homology to an orf of T. aromatica of 48%25 (trembl|Q7B0A2). no domains. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95045.1;transl_table=11
AM406670.1	EMBL	gene	2682655	2682846	.	-	.	ID=gene2477;Name=nahJ;gbkey=Gene;gene=nahJ;gene_biotype=protein_coding;locus_tag=azo2429
AM406670.1	EMBL	CDS	2682655	2682846	.	-	0	ID=cds2427;Parent=gene2477;Dbxref=EnsemblGenomes-Gn:azo2429,EnsemblGenomes-Tr:CAL95046,GOA:A1K891,InterPro:IPR004370,InterPro:IPR014347,InterPro:IPR018191,UniProtKB/TrEMBL:A1K891,NCBI_GP:CAL95046.1;Name=CAL95046.1;Note=4-oxalocrotonate tautomerase (EC 5.3.2.-) (4-OT). Catalyzes the ketonization of 2-hydroxymuconate stereoselectively to yield 2-oxo-3-hexenedioate. SPROT:Q9RHM8: 80%25 identity%3B 88%25 similarity InterPro: 4-oxalocrotonate tautomerase InterPro:IPR004370%3B Taut. ProDom: PD404143%3B Taut Pfam%3B PF01361%3B Tautomerase%3B 1. taut: 4-oxalocrotonate tautomerase helixturnhelix: reporting nucleic acid binding motif No transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;gene=nahJ;product=4-oxalocrotonate tautomerase;protein_id=CAL95046.1;transl_table=11
AM406670.1	EMBL	gene	2683055	2683843	.	-	.	ID=gene2478;Name=nahK;gbkey=Gene;gene=nahK;gene_biotype=protein_coding;locus_tag=azo2430
AM406670.1	EMBL	CDS	2683055	2683843	.	-	0	ID=cds2428;Parent=gene2478;Dbxref=EnsemblGenomes-Gn:azo2430,EnsemblGenomes-Tr:CAL95047,GOA:A1K892,InterPro:IPR002529,InterPro:IPR011234,InterPro:IPR017630,UniProtKB/TrEMBL:A1K892,NCBI_GP:CAL95047.1;Name=CAL95047.1;Note=Similar to TREMBL:Q93JW1 (67%25 identity)%3B TREMBL:Q9RHN0 (67%25 identity)%3B SWISSPROT:P49155 (59%25 identity). Pfam (PF01689): Hydratase/decarboxylase.%3B~High confidence in function and specificity;gbkey=CDS;gene=nahK;product=4-Oxalocrotonate decarboxylase;protein_id=CAL95047.1;transl_table=11
AM406670.1	EMBL	gene	2683840	2684880	.	-	.	ID=gene2479;Name=nahM;gbkey=Gene;gene=nahM;gene_biotype=protein_coding;locus_tag=azo2431
AM406670.1	EMBL	CDS	2683840	2684880	.	-	0	ID=cds2429;Parent=gene2479;Dbxref=EnsemblGenomes-Gn:azo2431,EnsemblGenomes-Tr:CAL95048,GOA:A1K893,InterPro:IPR000891,InterPro:IPR012425,InterPro:IPR013785,InterPro:IPR017629,NCBI_GP:CAL95048.1;Name=CAL95048.1;Note=Involved in Naphthalene or biphenyl and polychlorinated biphenyl degradation. Similar to TREMBL:Q9RHN1 (82%25 identity)%3B SWISSPROT:P51015 (80%25 identity)%3B SWISSPROT:P51017 (69%25 identity). InterPro (IPR000891): HMG-CoA Lyase-like. Pfam (PF00682): HMGL-like.%3B~High confidence in function and specificity;gbkey=CDS;gene=nahM;product=4-hydroxy 2-oxovalerate aldolase;protein_id=CAL95048.1;transl_table=11
AM406670.1	EMBL	gene	2684895	2685815	.	-	.	ID=gene2480;Name=nahO;gbkey=Gene;gene=nahO;gene_biotype=protein_coding;locus_tag=azo2432
AM406670.1	EMBL	CDS	2684895	2685815	.	-	0	ID=cds2430;Parent=gene2480;Dbxref=EnsemblGenomes-Gn:azo2432,EnsemblGenomes-Tr:CAL95049,GOA:A1K6Y5,InterPro:IPR000534,InterPro:IPR003361,InterPro:IPR015426,InterPro:IPR016040,NCBI_GP:CAL95049.1;Name=CAL95049.1;Note=Involved in naphthalene degradation. Similar to TREMBL:Q52039 (83%25 identity)%3B TREMBL:Q9ZI57 (76%25 identity)%3B SWISPROT:P77580 (52%25 identity). InterPro (IPR003361): Acetaldehyde dehydrogenase Pfam (PF02396): Acetaldehyde dehydrogenase.%3B~High confidence in function and specificity;gbkey=CDS;gene=nahO;product=acetaldehyde dehydrogenase;protein_id=CAL95049.1;transl_table=11
AM406670.1	EMBL	gene	2685848	2686642	.	-	.	ID=gene2481;Name=azo2433;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2433
AM406670.1	EMBL	CDS	2685848	2686642	.	-	0	ID=cds2431;Parent=gene2481;Dbxref=EnsemblGenomes-Gn:azo2433,EnsemblGenomes-Tr:CAL95050,GOA:A1K895,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:A1K895,NCBI_GP:CAL95050.1;Name=CAL95050.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8XUP8 (61%25 identity)%3B TREMBL:Q9I400 (57%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR) superfamily. InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL95050.1;transl_table=11
AM406670.1	EMBL	gene	2686737	2687519	.	-	.	ID=gene2482;Name=nahL;gbkey=Gene;gene=nahL;gene_biotype=protein_coding;locus_tag=azo2434
AM406670.1	EMBL	CDS	2686737	2687519	.	-	0	ID=cds2432;Parent=gene2482;Dbxref=EnsemblGenomes-Gn:azo2434,EnsemblGenomes-Tr:CAL95051,GOA:A1K896,InterPro:IPR002529,InterPro:IPR011234,InterPro:IPR017632,UniProtKB/TrEMBL:A1K896,NCBI_GP:CAL95051.1;Name=CAL95051.1;Note=Conversion of 2-hydroxypent-2%2C4-dienoate into 4-hydroxy-2-oxopentanoate. Meta-cleavage pathway for the degradation of phenols%2C cresols and catechol. Belongs to the todj/xyli/xylj/hpcg family. Similar to TREMBL:Q93JW5 (75%25 identity)%3B TREMBL:Q9ZI58 (65%25 identity)%3B SWISSPROT:P23107 (73%25 identity). InterPro (IPR002607): Hydratase/decarboxylase Pfam (PF01689): Hydratase/decarboxylase.%3B~High confidence in function and specificity;gbkey=CDS;gene=nahL;product=2-oxopent-4-enoate hydratase;protein_id=CAL95051.1;transl_table=11
AM406670.1	EMBL	gene	2687635	2689089	.	-	.	ID=gene2483;Name=nahI;gbkey=Gene;gene=nahI;gene_biotype=protein_coding;locus_tag=azo2435
AM406670.1	EMBL	CDS	2687635	2689089	.	-	0	ID=cds2433;Parent=gene2483;Dbxref=EnsemblGenomes-Gn:azo2435,EnsemblGenomes-Tr:CAL95052,GOA:A1K897,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR017628,InterPro:IPR029510,UniProtKB/TrEMBL:A1K897,NCBI_GP:CAL95052.1;Name=CAL95052.1;Note=2-hydroxymuconic semialdehyde dehydrogenase (HMSD). Homology to nahI of P. stutzeri of 73%25 (TREMBL:Q9S602) 2-HYDROXYMUCONIC ACID SEMIALDEHYDE CAN BE CONVERTED TO 2-HYDROXYPENT-24-DIENOATE EITHER DIRECTLY BY THE ACTION OF 2-HYDROXYMUCONIC SEMIALDEHYDE HYDROLASE (HMSH) OR BY THE ACTION OF THREE SEQUENTIAL ENZYMES THE FIRST OF WHICH IS HMSD. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs proA: gamma-glutamyl phosphate reductas;gbkey=CDS;gene=nahI;product=2-hydroxymuconic semialdehyde dehydrogenase;protein_id=CAL95052.1;transl_table=11
AM406670.1	EMBL	gene	2689143	2689580	.	-	.	ID=gene2484;Name=azo2436;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2436
AM406670.1	EMBL	CDS	2689143	2689580	.	-	0	ID=cds2434;Parent=gene2484;Dbxref=EnsemblGenomes-Gn:azo2436,EnsemblGenomes-Tr:CAL95053,InterPro:IPR005624,UniProtKB/TrEMBL:A1K898,NCBI_GP:CAL95053.1;Name=CAL95053.1;Note=Conserved hypothetical protein. Homology to orf4 of P. putida of 59%25 (trembl|Q93JW8). Pfam: DUF336. This family contains uncharacterised sequences%2C including several GlcG proteins. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95053.1;transl_table=11
AM406670.1	EMBL	gene	2689738	2690457	.	+	.	ID=gene2485;Name=aphS;gbkey=Gene;gene=aphS;gene_biotype=protein_coding;locus_tag=azo2437
AM406670.1	EMBL	CDS	2689738	2690457	.	+	0	ID=cds2435;Parent=gene2485;Dbxref=EnsemblGenomes-Gn:azo2437,EnsemblGenomes-Tr:CAL95054,GOA:A1K899,InterPro:IPR000524,InterPro:IPR008920,InterPro:IPR011711,InterPro:IPR011991,UniProtKB/TrEMBL:A1K899,NCBI_GP:CAL95054.1;Name=CAL95054.1;Note=Transcriptional regulator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=aphS;product=transcriptional regulator;protein_id=CAL95054.1;transl_table=11
AM406670.1	EMBL	gene	2690810	2691739	.	-	.	ID=gene2486;Name=lapB2;gbkey=Gene;gene=lapB2;gene_biotype=protein_coding;locus_tag=azo2438
AM406670.1	EMBL	CDS	2690810	2691739	.	-	0	ID=cds2436;Parent=gene2486;Dbxref=EnsemblGenomes-Gn:azo2438,EnsemblGenomes-Tr:CAL95055,GOA:A1K8A0,InterPro:IPR000486,InterPro:IPR004360,InterPro:IPR017624,InterPro:IPR029068,UniProtKB/TrEMBL:A1K8A0,NCBI_GP:CAL95055.1;Name=CAL95055.1;Note=In Pseudomonas sp. strain KL28 the genes%2Cdesignated as lap (for long-chain alkylphenols)%2C encoding enzymes for the catabolic 3- and 4-alkylphenol degradation pathway. Catechol 2%2C3-dioxygenase LapB%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=lapB2;product=Catechol 2%2C3-dioxygenase (metapyrocatechase);protein_id=CAL95055.1;transl_table=11
AM406670.1	EMBL	gene	2691869	2692924	.	-	.	ID=gene2487;Name=poxF;gbkey=Gene;gene=poxF;gene_biotype=protein_coding;locus_tag=azo2439
AM406670.1	EMBL	CDS	2691869	2692924	.	-	0	ID=cds2437;Parent=gene2487;Dbxref=EnsemblGenomes-Gn:azo2439,EnsemblGenomes-Tr:CAL95056,GOA:A1K8A1,InterPro:IPR001041,InterPro:IPR001221,InterPro:IPR001433,InterPro:IPR008333,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K8A1,NCBI_GP:CAL95056.1;Name=CAL95056.1;Note=Probable phenol hydroxylase (EC 1.14.13.7) (Phenol 2-monooxygenase P5 component). Probable electron transfer from NADPH via FAD and the 2Fe-2S center to the oxygenase activity site of the enzyme. InterPro: Oxidoreductase FAD and NAD(P)-binding domain hisT_truA: tRNA pseudouridine synthase A%3B~Specificity unclear;gbkey=CDS;gene=poxF;product=probable phenol hydroxylase%2C subunit P5;protein_id=CAL95056.1;transl_table=11
AM406670.1	EMBL	gene	2693134	2693493	.	-	.	ID=gene2488;Name=poxE;gbkey=Gene;gene=poxE;gene_biotype=protein_coding;locus_tag=azo2440
AM406670.1	EMBL	CDS	2693134	2693493	.	-	0	ID=cds2438;Parent=gene2488;Dbxref=EnsemblGenomes-Gn:azo2440,EnsemblGenomes-Tr:CAL95057,InterPro:IPR006756,UniProtKB/TrEMBL:A1K8A2,NCBI_GP:CAL95057.1;Name=CAL95057.1;Note=Pseudomonas sp. phenol hydroxylase P4 protein (EC 1.14.13.7%2C (phenol 2-monooxygenase P4 component). CATABOLIZES PHENOL AND SOME OF ITS METHYLATED DERIVATIVES. P4 IS REQUIRED FOR GROWTH ON PHENOL AND FOR IN VITRO PHENOL HYDROXYLASE ACTIVITY.%3B~High confidence in function and specificity;gbkey=CDS;gene=poxE;product=probable phenol hydroxylase%2C subunit P4;protein_id=CAL95057.1;transl_table=11
AM406670.1	EMBL	gene	2693966	2695519	.	-	.	ID=gene2489;Name=poxD;gbkey=Gene;gene=poxD;gene_biotype=protein_coding;locus_tag=azo2441
AM406670.1	EMBL	CDS	2693966	2695519	.	-	0	ID=cds2439;Parent=gene2489;Dbxref=EnsemblGenomes-Gn:azo2441,EnsemblGenomes-Tr:CAL95058,GOA:A1K8A3,InterPro:IPR003430,InterPro:IPR007029,InterPro:IPR009078,InterPro:IPR012348,UniProtKB/TrEMBL:A1K8A3,NCBI_GP:CAL95058.1;Name=CAL95058.1;Note=Probable phenol hydroxylase subunit%2C68%25 identity(84%25 similarity) to trEMBL:Q9RAF6%2CPhenol hydroxylase component [phyC] [Ralstonia sp. KN1]. TrEMBL%3BQ9ZNP4 Has PF02332:Methane/Phenol/Toluene Hydroxylase%3BIPR003430%3BBacterial phenol hydroxylase (EC: 1.14.13.7) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (EC: 1.14.13.25) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes%2Calicyclic%2C aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (EC: 1.14.13.-)%2C which hydroxylates toluene to form P-cresol. PF04945:IPR007029%3B YHS domain%3B This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases%2C some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding%2Cpossibly copper ions. This domain is duplicated in some copper transporting ATPases.%3B~High confidence in function and specificity;gbkey=CDS;gene=poxD;product=probable phenol hydroxylase%2C subunit P3;protein_id=CAL95058.1;transl_table=11
AM406670.1	EMBL	gene	2695548	2695817	.	-	.	ID=gene2490;Name=poxC;gbkey=Gene;gene=poxC;gene_biotype=protein_coding;locus_tag=azo2442
AM406670.1	EMBL	CDS	2695548	2695817	.	-	0	ID=cds2440;Parent=gene2490;Dbxref=EnsemblGenomes-Gn:azo2442,EnsemblGenomes-Tr:CAL95059,GOA:A1K8A4,InterPro:IPR003454,UniProtKB/TrEMBL:A1K8A4,NCBI_GP:CAL95059.1;Name=CAL95059.1;Note=Probable phenol hydrolase%2C subunit P2. Catabolizes phenol and some of its methylated derivatives. p2 is required for growth on phenol%2C and for in vitro phenol hydroxylase activity. Similar to SWISSPROT:P19731 (47%25 similarity%2C71%25 identity). Pfam (PF02406): MmoB/DmpM family.%3B~High confidence in function and specificity;gbkey=CDS;gene=poxC;product=probable phenol hydrolase%2C subunit P2;protein_id=CAL95059.1;transl_table=11
AM406670.1	EMBL	gene	2695828	2696823	.	-	.	ID=gene2491;Name=poxB;gbkey=Gene;gene=poxB;gene_biotype=protein_coding;locus_tag=azo2443
AM406670.1	EMBL	CDS	2695828	2696823	.	-	0	ID=cds2441;Parent=gene2491;Dbxref=EnsemblGenomes-Gn:azo2443,EnsemblGenomes-Tr:CAL95060,GOA:A1K8A5,InterPro:IPR003430,InterPro:IPR009078,InterPro:IPR012078,InterPro:IPR012348,UniProtKB/TrEMBL:A1K8A5,NCBI_GP:CAL95060.1;Name=CAL95060.1;Note=Probable Phenol hydroxylase%2C subunit P1%2C65%25 identity(69%25 similarity) to TrEMBL%3BQ7WYF3 LapL [lapL] [Pseudomonas sp. KL28]. Has PF02332%3BMethane/Phenol/Toluene Hydroxylase domain%3BIPR003430: Bacterial phenol hydroxylase (EC: 1.14.13.7) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (EC: 1.14.13.25) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes%2Calicyclic%2C aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (EC: 1.14.13.-)%2C which hydroxylates toluene to form P-cresol. No signal peptide or TMH reported to be present.%3B~Family membership;gbkey=CDS;gene=poxB;product=probable phenol hydroxylase%2C subunit P1;protein_id=CAL95060.1;transl_table=11
AM406670.1	EMBL	gene	2696900	2697163	.	-	.	ID=gene2492;Name=poxA;gbkey=Gene;gene=poxA;gene_biotype=protein_coding;locus_tag=azo2444
AM406670.1	EMBL	CDS	2696900	2697163	.	-	0	ID=cds2442;Parent=gene2492;Dbxref=EnsemblGenomes-Gn:azo2444,EnsemblGenomes-Tr:CAL95061,GOA:A1K8A6,InterPro:IPR010353,UniProtKB/TrEMBL:A1K8A6,NCBI_GP:CAL95061.1;Name=CAL95061.1;Note=Putative phenol hydroxylase%2C subunit P0. Homology to poxA of R. eutropha of 34%25 (trembl:O84958) This family consists of several bacterial phenol hydroxylase subunit proteins which are part of a multicomponent phenol hydroxylase. Some bacteria can utilise phenol or some of its methylated derivatives as their sole source of carbon and energy. The first step in this process is the conversion of phenol into catechol. Catechol is then further metabolised via the meta-cleavage pathway into TCA cycle intermediates. Pfam: Phenol hydrolase subunit no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=poxA;product=putative phenol hydrolase%2C subunit P0;protein_id=CAL95061.1;transl_table=11
AM406670.1	EMBL	gene	2697463	2697780	.	-	.	ID=gene2493;Name=poxG;gbkey=Gene;gene=poxG;gene_biotype=protein_coding;locus_tag=azo2445
AM406670.1	EMBL	CDS	2697463	2697780	.	-	0	ID=cds2443;Parent=gene2493;Dbxref=EnsemblGenomes-Gn:azo2445,EnsemblGenomes-Tr:CAL95062,GOA:A1K8A7,InterPro:IPR001041,InterPro:IPR006058,InterPro:IPR012675,UniProtKB/TrEMBL:A1K8A7,NCBI_GP:CAL95062.1;Name=CAL95062.1;Note=Probable ferredoxin-like protein. Homology to poxG of R. eutropha of 56%25 (trembl|O84964) The ferredoxins are iron-sulphur proteins that transfer electrons in a wide variety of metabolic reactions. Pfam: 2Fe-2S iron-sulfur cluster binding domain no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=poxG;product=probable ferredoxin-like protein;protein_id=CAL95062.1;transl_table=11
AM406670.1	EMBL	gene	2698080	2699780	.	+	.	ID=gene2494;Name=poxR;gbkey=Gene;gene=poxR;gene_biotype=protein_coding;locus_tag=azo2446
AM406670.1	EMBL	CDS	2698080	2699780	.	+	0	ID=cds2444;Parent=gene2494;Dbxref=EnsemblGenomes-Gn:azo2446,EnsemblGenomes-Tr:CAL95063,GOA:A1K8A8,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR004096,InterPro:IPR009057,InterPro:IPR010523,InterPro:IPR024096,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K8A8,NCBI_GP:CAL95063.1;Name=CAL95063.1;Note=Transcriptional regulatory protein probable involved into the phenol degradation pathway%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=poxR;product=probable positive regulator of phenol-degratives genes;protein_id=CAL95063.1;transl_table=11
AM406670.1	EMBL	gene	2699777	2700655	.	-	.	ID=gene2495;Name=pobR1;gbkey=Gene;gene=pobR1;gene_biotype=protein_coding;locus_tag=azo2447
AM406670.1	EMBL	CDS	2699777	2700655	.	-	0	ID=cds2445;Parent=gene2495;Dbxref=EnsemblGenomes-Gn:azo2447,EnsemblGenomes-Tr:CAL95064,GOA:A1K8A9,InterPro:IPR003313,InterPro:IPR009057,InterPro:IPR011051,InterPro:IPR014710,InterPro:IPR018060,InterPro:IPR020449,UniProtKB/TrEMBL:A1K8A9,NCBI_GP:CAL95064.1;Name=CAL95064.1;Note=pobR. Transcriptional regulator AraC family. InterPro: AraC type helix-turn-helix pdxH: pyridoxamine 5-phosphate oxidase%3B~Function unclear;gbkey=CDS;gene=pobR1;product=PobR regulator;protein_id=CAL95064.1;transl_table=11
AM406670.1	EMBL	gene	2700822	2702009	.	+	.	ID=gene2496;Name=pobA;gbkey=Gene;gene=pobA;gene_biotype=protein_coding;locus_tag=azo2448
AM406670.1	EMBL	CDS	2700822	2702009	.	+	0	ID=cds2446;Parent=gene2496;Dbxref=EnsemblGenomes-Gn:azo2448,EnsemblGenomes-Tr:CAL95065,GOA:A1K8B0,InterPro:IPR002938,InterPro:IPR003042,InterPro:IPR012733,UniProtKB/TrEMBL:A1K8B0,NCBI_GP:CAL95065.1;Name=CAL95065.1;Note=P-hydroxybenzoate hydroxylase InterPro: Aromatic-ring hydroxylase (flavoprotein monooxygenase)%3B~High confidence in function and specificity;gbkey=CDS;gene=pobA;product=4-hydroxybenzoate 3-monooxygenase;protein_id=CAL95065.1;transl_table=11
AM406670.1	EMBL	gene	2702082	2703143	.	-	.	ID=gene2497;Name=azo2449;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2449
AM406670.1	EMBL	CDS	2702082	2703143	.	-	0	ID=cds2447;Parent=gene2497;Dbxref=EnsemblGenomes-Gn:azo2449,EnsemblGenomes-Tr:CAL95066,GOA:A1K8B1,InterPro:IPR001789,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR011006,UniProtKB/TrEMBL:A1K8B1,NCBI_GP:CAL95066.1;Name=CAL95066.1;Note=Putative two component response regulator%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative two component response regulator;protein_id=CAL95066.1;transl_table=11
AM406670.1	EMBL	gene	2703151	2705901	.	-	.	ID=gene2498;Name=azo2450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2450
AM406670.1	EMBL	CDS	2703151	2705901	.	-	0	ID=cds2448;Parent=gene2498;Dbxref=EnsemblGenomes-Gn:azo2450,EnsemblGenomes-Tr:CAL95067,GOA:A1K8B2,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR013655,UniProtKB/TrEMBL:A1K8B2,NCBI_GP:CAL95067.1;Name=CAL95067.1;Note=Putative two-component system sensor protein%2C%3B~Function unclear;gbkey=CDS;product=putative two-component system sensor protein;protein_id=CAL95067.1;transl_table=11
AM406670.1	EMBL	gene	2706261	2706971	.	+	.	ID=gene2499;Name=azo2451;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2451
AM406670.1	EMBL	CDS	2706261	2706971	.	+	0	ID=cds2449;Parent=gene2499;Dbxref=EnsemblGenomes-Gn:azo2451,EnsemblGenomes-Tr:CAL95068,GOA:A1K8B3,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:A1K8B3,NCBI_GP:CAL95068.1;Name=CAL95068.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q98J95 (48%25 identity)%3B TREMBL:Q8YZV3 (43%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. PFAM (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL95068.1;transl_table=11
AM406670.1	EMBL	gene	2707060	2707500	.	+	.	ID=gene2500;Name=azo2452;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2452
AM406670.1	EMBL	CDS	2707060	2707500	.	+	0	ID=cds2450;Parent=gene2500;Dbxref=EnsemblGenomes-Gn:azo2452,EnsemblGenomes-Tr:CAL95069,GOA:A1K8B4,InterPro:IPR003789,InterPro:IPR019004,InterPro:IPR023168,UniProtKB/TrEMBL:A1K8B4,NCBI_GP:CAL95069.1;Name=CAL95069.1;Note=Conserved hypothetical protein%2C 31%25 identity (51%25 similarity) to TrEMBL%3BQ6NAA7. Has PF02637%2C GatB/Yqey domain%3BIPR003789:This domain is found in GatB and proteins related to bacterial Yqey P54464. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB O30509 which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism. No Signal peptide or TMH present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95069.1;transl_table=11
AM406670.1	EMBL	gene	2707510	2708151	.	-	.	ID=gene2501;Name=azo2453;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2453
AM406670.1	EMBL	CDS	2707510	2708151	.	-	0	ID=cds2451;Parent=gene2501;Dbxref=EnsemblGenomes-Gn:azo2453,EnsemblGenomes-Tr:CAL95070,GOA:A1K8B5,InterPro:IPR007396,InterPro:IPR012349,UniProtKB/TrEMBL:A1K8B5,NCBI_GP:CAL95070.1;Name=CAL95070.1;Note=Probable negative transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=probable negative transcriptional regulator;protein_id=CAL95070.1;transl_table=11
AM406670.1	EMBL	gene	2708500	2709174	.	+	.	ID=gene2502;Name=azo2454;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2454
AM406670.1	EMBL	CDS	2708500	2709174	.	+	0	ID=cds2452;Parent=gene2502;Dbxref=EnsemblGenomes-Gn:azo2454,EnsemblGenomes-Tr:CAL95071,InterPro:IPR024447,UniProtKB/TrEMBL:A1K8B6,NCBI_GP:CAL95071.1;Name=CAL95071.1;Note=Hypothetical secreted protein no homology of the entire protein to the data bank no domains predicted signal peptide no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95071.1;transl_table=11
AM406670.1	EMBL	gene	2709188	2709628	.	-	.	ID=gene2503;Name=rcp2;gbkey=Gene;gene=rcp2;gene_biotype=protein_coding;locus_tag=azo2455
AM406670.1	EMBL	CDS	2709188	2709628	.	-	0	ID=cds2453;Parent=gene2503;Dbxref=EnsemblGenomes-Gn:azo2455,EnsemblGenomes-Tr:CAL95072,GOA:A1K8B7,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1K8B7,NCBI_GP:CAL95072.1;Name=CAL95072.1;Note=Putative two-component response regulator%2C%3B~Specificity unclear;gbkey=CDS;gene=rcp2;product=putative two-component response regulator;protein_id=CAL95072.1;transl_table=11
AM406670.1	EMBL	gene	2709625	2711352	.	-	.	ID=gene2504;Name=cph1;gbkey=Gene;gene=cph1;gene_biotype=protein_coding;locus_tag=azo2456
AM406670.1	EMBL	CDS	2709625	2711352	.	-	0	ID=cds2454;Parent=gene2504;Dbxref=EnsemblGenomes-Gn:azo2456,EnsemblGenomes-Tr:CAL95073,GOA:A1K8B8,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR006311,InterPro:IPR009082,InterPro:IPR013656,UniProtKB/TrEMBL:A1K8B8,NCBI_GP:CAL95073.1;Name=CAL95073.1;Note=Putative two-component system sensor protein%2C%3B~Function unclear;gbkey=CDS;gene=cph1;product=putative two-component system sensor protein;protein_id=CAL95073.1;transl_table=11
AM406670.1	EMBL	gene	2711355	2713823	.	-	.	ID=gene2505;Name=azo2457;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2457
AM406670.1	EMBL	CDS	2711355	2713823	.	-	0	ID=cds2455;Parent=gene2505;Dbxref=EnsemblGenomes-Gn:azo2457,EnsemblGenomes-Tr:CAL95074,GOA:A1K8B9,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR013655,UniProtKB/TrEMBL:A1K8B9,NCBI_GP:CAL95074.1;Name=CAL95074.1;Note=Putative sensory box histidine kinase%2C%3B~Function unclear;gbkey=CDS;product=putative sensory box histidine kinase;protein_id=CAL95074.1;transl_table=11
AM406670.1	EMBL	gene	2714039	2714560	.	-	.	ID=gene2506;Name=azo2458;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2458
AM406670.1	EMBL	CDS	2714039	2714560	.	-	0	ID=cds2456;Parent=gene2506;Dbxref=EnsemblGenomes-Gn:azo2458,EnsemblGenomes-Tr:CAL95075,GOA:A1K8C0,InterPro:IPR000792,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K8C0,NCBI_GP:CAL95075.1;Name=CAL95075.1;Note=Putative transcriptional regulator%2C LuxR family%2Cvery low similarity to SWISSPROT: sprot|NARP_ECOLI (16%25 Escherichia coli%2C NarP) InterPro: IPR000792 HTH_LuxR. Pfam: PF00196 GerE. Signal P reporting signal peptide. HTH reporting nucleic acid binding motif.%3B~Function unclear;gbkey=CDS;product=putative transcriptional regulator%2C LuxR family;protein_id=CAL95075.1;transl_table=11
AM406670.1	EMBL	gene	2715013	2716176	.	+	.	ID=gene2507;Name=azo2459;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2459
AM406670.1	EMBL	CDS	2715013	2716176	.	+	0	ID=cds2457;Parent=gene2507;Dbxref=EnsemblGenomes-Gn:azo2459,EnsemblGenomes-Tr:CAL95076,UniProtKB/TrEMBL:A1K8C1,NCBI_GP:CAL95076.1;Name=CAL95076.1;Note=Hypothetical protein%2C has very weak homolgy with hits in the database. NO motifs%2Cdomains%2C signal peptide or TMH present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL95076.1;transl_table=11
AM406670.1	EMBL	gene	2716200	2717258	.	+	.	ID=gene2508;Name=azo2460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2460
AM406670.1	EMBL	CDS	2716200	2717258	.	+	0	ID=cds2458;Parent=gene2508;Dbxref=EnsemblGenomes-Gn:azo2460,EnsemblGenomes-Tr:CAL95077,UniProtKB/TrEMBL:A1K8C2,NCBI_GP:CAL95077.1;Name=CAL95077.1;Note=Conserved hypothetical protein. Homology to mll6891 of Mesorhizobium loti of 37%25 (gi|14026496|dbj|BAB53093.1|). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95077.1;transl_table=11
AM406670.1	EMBL	gene	2717280	2718590	.	+	.	ID=gene2509;Name=azo2461;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2461
AM406670.1	EMBL	CDS	2717280	2718590	.	+	0	ID=cds2459;Parent=gene2509;Dbxref=EnsemblGenomes-Gn:azo2461,EnsemblGenomes-Tr:CAL95078,UniProtKB/TrEMBL:A1K8C3,NCBI_GP:CAL95078.1;Name=CAL95078.1;Note=Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58%25 (trembl|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95078.1;transl_table=11
AM406670.1	EMBL	gene	2718645	2720618	.	+	.	ID=gene2510;Name=azo2462;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2462
AM406670.1	EMBL	CDS	2718645	2720618	.	+	0	ID=cds2460;Parent=gene2510;Dbxref=EnsemblGenomes-Gn:azo2462,EnsemblGenomes-Tr:CAL95079,UniProtKB/TrEMBL:A1K8C4,NCBI_GP:CAL95079.1;Name=CAL95079.1;Note=Hypothetical secreted protein. No homology of the entire protein to the data bank. No domains predicted. No TMHs. Signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95079.1;transl_table=11
AM406670.1	EMBL	gene	2720645	2721274	.	+	.	ID=gene2511;Name=azo2463;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2463
AM406670.1	EMBL	CDS	2720645	2721274	.	+	0	ID=cds2461;Parent=gene2511;Dbxref=EnsemblGenomes-Gn:azo2463,EnsemblGenomes-Tr:CAL95080,UniProtKB/TrEMBL:A1K8C5,NCBI_GP:CAL95080.1;Name=CAL95080.1;Note=Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95080.1;transl_table=11
AM406670.1	EMBL	gene	2721255	2722364	.	+	.	ID=gene2512;Name=azo2464;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2464
AM406670.1	EMBL	CDS	2721255	2722364	.	+	0	ID=cds2462;Parent=gene2512;Dbxref=EnsemblGenomes-Gn:azo2464,EnsemblGenomes-Tr:CAL95081,UniProtKB/TrEMBL:A1K8C6,NCBI_GP:CAL95081.1;Name=CAL95081.1;Note=Conserved hypothetical protein. Homology to mll6883 of M.loti of 58%25 (trembl|Q987W1(SRS)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95081.1;transl_table=11
AM406670.1	EMBL	gene	2722381	2723358	.	+	.	ID=gene2513;Name=azo2465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2465
AM406670.1	EMBL	CDS	2722381	2723358	.	+	0	ID=cds2463;Parent=gene2513;Dbxref=EnsemblGenomes-Gn:azo2465,EnsemblGenomes-Tr:CAL95082,UniProtKB/TrEMBL:A1K8C7,NCBI_GP:CAL95082.1;Name=CAL95082.1;Note=Hypothetical protein. No homology to the data base. No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=hypothetical protein;protein_id=CAL95082.1;transl_table=11
AM406670.1	EMBL	gene	2723377	2724144	.	+	.	ID=gene2514;Name=azo2466;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2466
AM406670.1	EMBL	CDS	2723377	2724144	.	+	0	ID=cds2464;Parent=gene2514;Dbxref=EnsemblGenomes-Gn:azo2466,EnsemblGenomes-Tr:CAL95083,UniProtKB/TrEMBL:A1K8C8,NCBI_GP:CAL95083.1;Name=CAL95083.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95083.1;transl_table=11
AM406670.1	EMBL	gene	2724141	2725190	.	+	.	ID=gene2515;Name=azo2467;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2467
AM406670.1	EMBL	CDS	2724141	2725190	.	+	0	ID=cds2465;Parent=gene2515;Dbxref=EnsemblGenomes-Gn:azo2467,EnsemblGenomes-Tr:CAL95084,InterPro:IPR029433,UniProtKB/TrEMBL:A1K8C9,NCBI_GP:CAL95084.1;Name=CAL95084.1;Note=Conserved hypothetical protein. Homology to mll6881 of M.loti of 49%25 (trembl|Q987W3(SRS)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95084.1;transl_table=11
AM406670.1	EMBL	gene	2725351	2726754	.	+	.	ID=gene2516;Name=azo2468;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2468
AM406670.1	EMBL	CDS	2725351	2726754	.	+	0	ID=cds2466;Parent=gene2516;Dbxref=EnsemblGenomes-Gn:azo2468,EnsemblGenomes-Tr:CAL95085,GOA:A1K8D0,InterPro:IPR000524,InterPro:IPR004839,InterPro:IPR011991,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K8D0,NCBI_GP:CAL95085.1;Name=CAL95085.1;Note=Conserved hypothetical transcriptional regulator. Homology to pp3544 of P. putida of 56%25 (trembl|Q88H21). InterPro: Aminotransferases class-I (IPR004838)%3B Bacterial regulatory proteins%2C GntR family (IPR000524). Pfam: Bacterial regulatory proteins%2C gntR family%3B Aminotransferase class I and II. no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical transcriptional regulator;protein_id=CAL95085.1;transl_table=11
AM406670.1	EMBL	gene	2726765	2727181	.	-	.	ID=gene2517;Name=azo2469;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2469
AM406670.1	EMBL	CDS	2726765	2727181	.	-	0	ID=cds2467;Parent=gene2517;Dbxref=EnsemblGenomes-Gn:azo2469,EnsemblGenomes-Tr:CAL95086,InterPro:IPR025870,InterPro:IPR029068,UniProtKB/TrEMBL:A1K8D1,NCBI_GP:CAL95086.1;Name=CAL95086.1;Note=Conserved hypothetical protein. Homology to bb1298 of B. brochiseptica of 64%25 (trembl|Q7WMU2). Pfam: Glyoxalase/Bleomycin restiant protein. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95086.1;transl_table=11
AM406670.1	EMBL	gene	2727286	2728407	.	-	.	ID=gene2518;Name=lldD;gbkey=Gene;gene=lldD;gene_biotype=protein_coding;locus_tag=azo2470
AM406670.1	EMBL	CDS	2727286	2728407	.	-	0	ID=cds2468;Parent=gene2518;Dbxref=EnsemblGenomes-Gn:azo2470,EnsemblGenomes-Tr:CAL95087,GOA:A1K8D2,InterPro:IPR000262,InterPro:IPR008259,InterPro:IPR012133,InterPro:IPR013785,UniProtKB/TrEMBL:A1K8D2,NCBI_GP:CAL95087.1;Name=CAL95087.1;Note=Conserved hypothetical L-lactate dehydrogenase (cytochrome). Homology to lldD of B. bronchisptica of 51%25 (tremble:Q7WND1). InterPro: FMN-dependent alpha-hydroxy acid dehydrogenases (IPR000262)%3B Protein binding FMN and related compounds core region (IPR003009). Pfam: FMN-dependent dehydrognease. no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;gene=lldD;product=conserved hypothetical L-lactate dehydrogenase (cytochrome);protein_id=CAL95087.1;transl_table=11
AM406670.1	EMBL	gene	2728444	2729406	.	-	.	ID=gene2519;Name=panE1;gbkey=Gene;gene=panE1;gene_biotype=protein_coding;locus_tag=azo2471
AM406670.1	EMBL	CDS	2728444	2729406	.	-	0	ID=cds2469;Parent=gene2519;Dbxref=EnsemblGenomes-Gn:azo2471,EnsemblGenomes-Tr:CAL95088,GOA:A1K8D3,InterPro:IPR003710,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR013332,InterPro:IPR013752,InterPro:IPR016040,UniProtKB/TrEMBL:A1K8D3,NCBI_GP:CAL95088.1;Name=CAL95088.1;Note=Ketopantoate reductase (KPA reductase) (KPR). Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity). TIGRFAM: apbA_panE: 2-dehydropantoate 2-reductase Pfam: ApbA: Ketopantoate reductase PanE/ApbA%3B~High confidence in function and specificity;gbkey=CDS;gene=panE1;product=2-dehydropantoate 2-reductase;protein_id=CAL95088.1;transl_table=11
AM406670.1	EMBL	gene	2729490	2730527	.	-	.	ID=gene2520;Name=dctP4;gbkey=Gene;gene=dctP4;gene_biotype=protein_coding;locus_tag=azo2472
AM406670.1	EMBL	CDS	2729490	2730527	.	-	0	ID=cds2470;Parent=gene2520;Dbxref=EnsemblGenomes-Gn:azo2472,EnsemblGenomes-Tr:CAL95089,GOA:A1K8D4,InterPro:IPR018389,UniProtKB/TrEMBL:A1K8D4,NCBI_GP:CAL95089.1;Name=CAL95089.1;Note=TRAP-dicarboxylate transporter. Binds c4-dicarboxylates%3B part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 22%25 TRAP_transptDctP. Pfam:PF03480%3B SBP_bac_7%3B 1. TIGRFAMs:TIGR00787%3B dctP%3B 1. Signal peptide: present. TMHelix:1%3B~High confidence in function and specificity;gbkey=CDS;gene=dctP4;product=putative C4-dicarboxylate-binding periplasmic protein;protein_id=CAL95089.1;transl_table=11
AM406670.1	EMBL	gene	2730630	2732087	.	-	.	ID=gene2521;Name=xylC;gbkey=Gene;gene=xylC;gene_biotype=protein_coding;locus_tag=azo2473
AM406670.1	EMBL	CDS	2730630	2732087	.	-	0	ID=cds2471;Parent=gene2521;Dbxref=EnsemblGenomes-Gn:azo2473,EnsemblGenomes-Tr:CAL95090,GOA:A1K8D5,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,UniProtKB/TrEMBL:A1K8D5,NCBI_GP:CAL95090.1;Name=CAL95090.1;Note=Probable benzaldehyde dehydrogenase [NAD+] (EC 1.2.1.28). Homology to xylC of P. putida of 53%25 (sprot|XYLC_PSEPU). CATALYTIC ACTIVITY: Benzaldehyde + NAD(+) + H(2)O %3D benzoate + NADH. Interpro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs proA: gamma-glutamyl phosphate reductas%3B~Family membership;gbkey=CDS;gene=xylC;product=probable benzaldehyde dehydrogenase (NAD+);protein_id=CAL95090.1;transl_table=11
AM406670.1	EMBL	gene	2732140	2733846	.	-	.	ID=gene2522;Name=alsS;gbkey=Gene;gene=alsS;gene_biotype=protein_coding;locus_tag=azo2474
AM406670.1	EMBL	CDS	2732140	2733846	.	-	0	ID=cds2472;Parent=gene2522;Dbxref=EnsemblGenomes-Gn:azo2474,EnsemblGenomes-Tr:CAL95091,GOA:A1K8D6,InterPro:IPR000399,InterPro:IPR011766,InterPro:IPR012000,InterPro:IPR012001,InterPro:IPR029035,InterPro:IPR029061,UniProtKB/TrEMBL:A1K8D6,NCBI_GP:CAL95091.1;Name=CAL95091.1;Note=Acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid synthase large subunit) (ALS). InterPro: Thiamine pyrophosphate dependent enzyme TIGRFAM: acolac_lg: acetolactate synthase large subunit%3B~Family membership;gbkey=CDS;gene=alsS;product=acetolactate synthase;protein_id=CAL95091.1;transl_table=11
AM406670.1	EMBL	gene	2733998	2734894	.	-	.	ID=gene2523;Name=dntR;gbkey=Gene;gene=dntR;gene_biotype=protein_coding;locus_tag=azo2475
AM406670.1	EMBL	CDS	2733998	2734894	.	-	0	ID=cds2473;Parent=gene2523;Dbxref=EnsemblGenomes-Gn:azo2475,EnsemblGenomes-Tr:CAL95092,GOA:A1K8D7,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K8D7,NCBI_GP:CAL95092.1;Name=CAL95092.1;Note=Transcriptional regulator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=dntR;product=transcriptional regulator%2C LysR family;protein_id=CAL95092.1;transl_table=11
AM406670.1	EMBL	gene	2735125	2736588	.	+	.	ID=gene2524;Name=rdxA;gbkey=Gene;gene=rdxA;gene_biotype=protein_coding;locus_tag=azo2476
AM406670.1	EMBL	CDS	2735125	2736588	.	+	0	ID=cds2474;Parent=gene2524;Dbxref=EnsemblGenomes-Gn:azo2476,EnsemblGenomes-Tr:CAL95093,GOA:A1K8D8,InterPro:IPR001450,InterPro:IPR013783,InterPro:IPR014116,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K8D8,NCBI_GP:CAL95093.1;Name=CAL95093.1;Note=Putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein. Homology to rdxA of R. sphaeroides of 37%25 (SWISSPROT:RDXA_RHOSH) Involved in a membrane generated redox signal. Pfam: 4Fe-4S binding domain Probable 5 TMHs no signal peptide%3B~Family membership;gbkey=CDS;gene=rdxA;product=putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein;protein_id=CAL95093.1;transl_table=11
AM406670.1	EMBL	gene	2737170	2737286	.	-	.	ID=gene2525;Name=azo2477;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2477
AM406670.1	EMBL	CDS	2737170	2737286	.	-	0	ID=cds2475;Parent=gene2525;Dbxref=EnsemblGenomes-Gn:azo2477,EnsemblGenomes-Tr:CAL95094,UniProtKB/TrEMBL:A1K8D9,NCBI_GP:CAL95094.1;Name=CAL95094.1;Note=Putative hypothetical protein. Has extremely weak homologs in the the database. No signaficant known doamins%2Cmotifs or signal peptide present.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL95094.1;transl_table=11
AM406670.1	EMBL	gene	2737435	2738619	.	+	.	ID=gene2526;Name=azo2478;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2478
AM406670.1	EMBL	CDS	2737435	2738619	.	+	0	ID=cds2476;Parent=gene2526;Dbxref=EnsemblGenomes-Gn:azo2478,EnsemblGenomes-Tr:CAL95095,GOA:A1K8E0,InterPro:IPR005829,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K8E0,NCBI_GP:CAL95095.1;Name=CAL95095.1;Note=Permease%2Cmember of the Major Facilitator Superfamiliy (MFS)transporters. MFS are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. 34%25 MFS.IPR005829%3B Sug_transporter.IPR010916%3BTONB_Box_N. TMHelix:9.%3B~Function unclear;gbkey=CDS;product=putative permease%2C member of the MFS transporter;protein_id=CAL95095.1;transl_table=11
AM406670.1	EMBL	gene	2738628	2739335	.	-	.	ID=gene2527;Name=azo2479;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2479
AM406670.1	EMBL	CDS	2738628	2739335	.	-	0	ID=cds2477;Parent=gene2527;Dbxref=EnsemblGenomes-Gn:azo2479,EnsemblGenomes-Tr:CAL95096,InterPro:IPR024513,InterPro:IPR028976,UniProtKB/TrEMBL:A1K8E1,NCBI_GP:CAL95096.1;Name=CAL95096.1;Note=Conserved hypothetical membrane protein. Homology to VV12384 of Vibrio vulnificus of 60%25 (trembl|Q8DA26). No domains predicted. TMHMM2 reporting 1 TMH present. No signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95096.1;transl_table=11
AM406670.1	EMBL	gene	2739453	2739998	.	-	.	ID=gene2528;Name=azo2480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2480
AM406670.1	EMBL	CDS	2739453	2739998	.	-	0	ID=cds2478;Parent=gene2528;Dbxref=EnsemblGenomes-Gn:azo2480,EnsemblGenomes-Tr:CAL95097,GOA:A1K8E2,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:A1K8E2,NCBI_GP:CAL95097.1;Name=CAL95097.1;Note=Putative TetR family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative TetR family transcriptional regulator;protein_id=CAL95097.1;transl_table=11
AM406670.1	EMBL	gene	2740029	2740652	.	+	.	ID=gene2529;Name=azo2481;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2481
AM406670.1	EMBL	CDS	2740029	2740652	.	+	0	ID=cds2479;Parent=gene2529;Dbxref=EnsemblGenomes-Gn:azo2481,EnsemblGenomes-Tr:CAL95098,InterPro:IPR007065,UniProtKB/TrEMBL:A1K8E3,NCBI_GP:CAL95098.1;Name=CAL95098.1;Note=Conserved hypothetical membrane protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95098.1;transl_table=11
AM406670.1	EMBL	gene	2740640	2745688	.	-	.	ID=gene2530;Name=azo2482;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2482
AM406670.1	EMBL	CDS	2740640	2745688	.	-	0	ID=cds2480;Parent=gene2530;Dbxref=EnsemblGenomes-Gn:azo2482,EnsemblGenomes-Tr:CAL95099,GOA:A1K8E4,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR013656,UniProtKB/TrEMBL:A1K8E4,NCBI_GP:CAL95099.1;Name=CAL95099.1;Note=Gene function unknown%2C no significant homology to proteins of known function. Typical domains for hybrid sensor and regulator are found. InterPro: IPR003594 ATPbind_ATPase. IPR004358 Bact_sens_pr_C. IPR005467 His_kinase. IPR003661 His_kinA_N. IPR001789 Response_reg. IPR008207 Hpt. IPR000014 PAS_domain. IPR001610 PAC. Pfam: PF00072 Response_reg. PF02518 HATPase_c. PF00512 HisKA. PF00989 PAS. PF00785 PAC. SMART: SM00387 HATPase_c. SM00388 HisKA. SM00448 REC. SM00091 PAS SM00086 PAC. TIGRFAM: TIGR00229 PAS domain S-box. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.%3B~Conserved hypothetical protein;gbkey=CDS;product=putative hybrid sensor and regulator;protein_id=CAL95099.1;transl_table=11
AM406670.1	EMBL	gene	2745706	2746377	.	-	.	ID=gene2531;Name=azo2483;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2483
AM406670.1	EMBL	CDS	2745706	2746377	.	-	0	ID=cds2481;Parent=gene2531;Dbxref=EnsemblGenomes-Gn:azo2483,EnsemblGenomes-Tr:CAL95100,InterPro:IPR013078,InterPro:IPR029033,UniProtKB/TrEMBL:A1K8E5,NCBI_GP:CAL95100.1;Name=CAL95100.1;Note=Conserved hypothetical secreted protein. Homology to Magn03007875 of Magnetospirillum magnetotacticum of 31%25 (gi|46202369|ref|ZP_00208493.1|(NBCI ENTREZ)). No domains predicted. Signal Peptide is reported to be Present%2C by Signal P program. No TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95100.1;transl_table=11
AM406670.1	EMBL	gene	2746361	2747515	.	-	.	ID=gene2532;Name=azo2484;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2484
AM406670.1	EMBL	CDS	2746361	2747515	.	-	0	ID=cds2482;Parent=gene2532;Dbxref=EnsemblGenomes-Gn:azo2484,EnsemblGenomes-Tr:CAL95101,GOA:A1K8E6,InterPro:IPR001789,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR011006,UniProtKB/TrEMBL:A1K8E6,NCBI_GP:CAL95101.1;Name=CAL95101.1;Note=Putative response regulator%2C%3B~Family membership;gbkey=CDS;product=putative response regulator;protein_id=CAL95101.1;transl_table=11
AM406670.1	EMBL	gene	2747681	2747938	.	-	.	ID=gene2533;Name=azo2485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2485
AM406670.1	EMBL	CDS	2747681	2747938	.	-	0	ID=cds2483;Parent=gene2533;Dbxref=EnsemblGenomes-Gn:azo2485,EnsemblGenomes-Tr:CAL95102,InterPro:IPR025309,UniProtKB/TrEMBL:A1K8E7,NCBI_GP:CAL95102.1;Name=CAL95102.1;Note=Conserved hypothetical protein. Homology to eca2717 of E. carotovora of 35%25 (tremble:Q6D3M7). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95102.1;transl_table=11
AM406670.1	EMBL	gene	2747955	2750558	.	-	.	ID=gene2534;Name=ppsA2;gbkey=Gene;gene=ppsA2;gene_biotype=protein_coding;locus_tag=azo2486
AM406670.1	EMBL	CDS	2747955	2750558	.	-	0	ID=cds2484;Parent=gene2534;Dbxref=EnsemblGenomes-Gn:azo2486,EnsemblGenomes-Tr:CAL95103,GOA:A1K8E8,InterPro:IPR002192,InterPro:IPR008279,InterPro:IPR013815,InterPro:IPR013816,UniProtKB/TrEMBL:A1K8E8,NCBI_GP:CAL95103.1;Name=CAL95103.1;Note=Phosphoenolpyruvate synthase(Pyruvatewater dikinase)(PEP synthase). Essential step in gluconeogenesis when pyruvate and lactate are used as a carbon source.Catalytic activity:atp + pyruvate + h(2)o %3D amp + phosphoenolpyruvate + phosphate. 25%25 PEP_mobile.IPR006319%3B PEP_synth.IPR000121%3BPEP_utilizers.IPR002192%3B PPDK_N_term. Pfam:PF00391%3B PEP-utilizers%3B 1.PF02896%3B PEP-utilizers_C%3B 1. PF01326%3B PPDK_N%3B 1. TIGRFAMs:TIGR01418%3B PEP_synth%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=ppsA2;product=putative phosphoenolpyruvate synthase;protein_id=CAL95103.1;transl_table=11
AM406670.1	EMBL	gene	2750555	2751166	.	-	.	ID=gene2535;Name=azo2487;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2487
AM406670.1	EMBL	CDS	2750555	2751166	.	-	0	ID=cds2485;Parent=gene2535;Dbxref=EnsemblGenomes-Gn:azo2487,EnsemblGenomes-Tr:CAL95104,GOA:A1K8E9,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:A1K8E9,NCBI_GP:CAL95104.1;Name=CAL95104.1;Note=Putative TetR family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative TetR family transcriptional regulator;protein_id=CAL95104.1;transl_table=11
AM406670.1	EMBL	gene	2751342	2751662	.	-	.	ID=gene2536;Name=azo2488;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2488
AM406670.1	EMBL	CDS	2751342	2751662	.	-	0	ID=cds2486;Parent=gene2536;Dbxref=EnsemblGenomes-Gn:azo2488,EnsemblGenomes-Tr:CAL95105,UniProtKB/TrEMBL:A1K8F0,NCBI_GP:CAL95105.1;Name=CAL95105.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95105.1;transl_table=11
AM406670.1	EMBL	gene	2751828	2753672	.	-	.	ID=gene2537;Name=azo2489;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2489
AM406670.1	EMBL	CDS	2751828	2753672	.	-	0	ID=cds2487;Parent=gene2537;Dbxref=EnsemblGenomes-Gn:azo2489,EnsemblGenomes-Tr:CAL95106,GOA:A1K8F1,InterPro:IPR001898,InterPro:IPR004680,InterPro:IPR006037,UniProtKB/TrEMBL:A1K8F1,NCBI_GP:CAL95106.1;Name=CAL95106.1;Note=Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions(sodium symporters). Hypothetical E.coli protein yfbS. Similar to TrkA. The NAD+ -binding protein TrkA is a component of a low-affinity K+ uptake system in Escherichia coli. This protein has the TrkA-C and TrkA-N domains. dass: anion transporter%3B~High confidence in function and specificity;gbkey=CDS;product=putative transport protein;protein_id=CAL95106.1;transl_table=11
AM406670.1	EMBL	gene	2753758	2754147	.	-	.	ID=gene2538;Name=txn;gbkey=Gene;gene=txn;gene_biotype=protein_coding;locus_tag=azo2490
AM406670.1	EMBL	CDS	2753758	2754147	.	-	0	ID=cds2488;Parent=gene2538;Dbxref=EnsemblGenomes-Gn:azo2490,EnsemblGenomes-Tr:CAL95107,GOA:A1K8F2,InterPro:IPR012336,InterPro:IPR013766,UniProtKB/TrEMBL:A1K8F2,NCBI_GP:CAL95107.1;Name=CAL95107.1;Note=Putative Thioredoxin. Homology to txn (THIO_ICTPU) of I. punctatus of 36%25. Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. InterPro: Thioredoxin (IPR0006662) Tigrfam: dsbE: periplasmic protein thiol:disulfie Oxidoreductase%2C DSB subfamily Pfam: Thioredoxin no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=txn;product=thioredoxin-disulfide reductase;protein_id=CAL95107.1;transl_table=11
AM406670.1	EMBL	gene	2754465	2755391	.	-	.	ID=gene2539;Name=etfA3;gbkey=Gene;gene=etfA3;gene_biotype=protein_coding;locus_tag=azo2491
AM406670.1	EMBL	CDS	2754465	2755391	.	-	0	ID=cds2489;Parent=gene2539;Dbxref=EnsemblGenomes-Gn:azo2491,EnsemblGenomes-Tr:CAL95108,GOA:A1K8F3,InterPro:IPR001308,InterPro:IPR014729,InterPro:IPR014730,InterPro:IPR014731,InterPro:IPR018206,InterPro:IPR029035,UniProtKB/TrEMBL:A1K8F3,NCBI_GP:CAL95108.1;Name=CAL95108.1;Note=Probable electron transfer flavoprotein%2C alpha subunit. Homology to etfA of B. japonicum of 65%25 (sprot|ETFA_BRAJA) The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein alpha-subunit (IPR001308) Pfam: Electron transfer flavoprotein alpha subunit no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=etfA3;product=probable electron transfer flavoprotein%2C alpha subunit;protein_id=CAL95108.1;transl_table=11
AM406670.1	EMBL	gene	2755391	2756140	.	-	.	ID=gene2540;Name=etfB3;gbkey=Gene;gene=etfB3;gene_biotype=protein_coding;locus_tag=azo2492
AM406670.1	EMBL	CDS	2755391	2756140	.	-	0	ID=cds2490;Parent=gene2540;Dbxref=EnsemblGenomes-Gn:azo2492,EnsemblGenomes-Tr:CAL95109,GOA:A1K6T4,InterPro:IPR000049,InterPro:IPR012255,InterPro:IPR014729,InterPro:IPR014730,UniProtKB/TrEMBL:A1K6T4,NCBI_GP:CAL95109.1;Name=CAL95109.1;Note=Electron transfer flavoprotein%2C beta subunit. Homology to etfB of B. japonicum of 71%25 (sprot|ETFB_BRAJA). The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein beta-subunit (IPR000049) Pfam: Electron transfer flavoprotein beta subunit no signal peptide no TMHS%3B~High confidence in function and specificity;gbkey=CDS;gene=etfB3;product=electron transfer flavoprotein%2C beta subunit;protein_id=CAL95109.1;transl_table=11
AM406670.1	EMBL	gene	2756182	2756715	.	-	.	ID=gene2541;Name=azo2493;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2493
AM406670.1	EMBL	CDS	2756182	2756715	.	-	0	ID=cds2491;Parent=gene2541;Dbxref=EnsemblGenomes-Gn:azo2493,EnsemblGenomes-Tr:CAL95110,InterPro:IPR002539,InterPro:IPR029069,UniProtKB/TrEMBL:A1K8F5,NCBI_GP:CAL95110.1;Name=CAL95110.1;Note=Entry name:- TREMBL:Q8XXS1 InterPro IPR002539%3B MaoC_dehydratas. Pfam PF01575%3B MaoC_dehydratas%3B 1. Identities %3D 74/154 (48%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95110.1;transl_table=11
AM406670.1	EMBL	gene	2756715	2758502	.	-	.	ID=gene2542;Name=aidB2;gbkey=Gene;gene=aidB2;gene_biotype=protein_coding;locus_tag=azo2494
AM406670.1	EMBL	CDS	2756715	2758502	.	-	0	ID=cds2492;Parent=gene2542;Dbxref=EnsemblGenomes-Gn:azo2494,EnsemblGenomes-Tr:CAL95111,GOA:A1K8F6,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR013786,InterPro:IPR020953,InterPro:IPR025878,UniProtKB/TrEMBL:A1K8F6,NCBI_GP:CAL95111.1;Name=CAL95111.1;Note=The aidB gene encodes a protein of ca. 60 kDa that is homologous to several mammalian acyl coenzyme A dehydrogenases. Reaction:- acyl-CoA + acceptor %3D 2%2C3-dehydroacyl-CoA + reduced acceptor Entry name SWISSPROT:AIDB_ECOLI InterPro IPR006089%3B Acyl-CoA_dh. IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR006092%3B Acyl-CoA_dh_N. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. PF02771%3B Acyl-CoA_dh_N%3B 1. Identities %3D 85/289 (29%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=aidB2;product=putative acyl-CoA dehydrogenase;protein_id=CAL95111.1;transl_table=11
AM406670.1	EMBL	gene	2758926	2759345	.	-	.	ID=gene2543;Name=fcbC1;gbkey=Gene;gene=fcbC1;gene_biotype=protein_coding;locus_tag=azo2495
AM406670.1	EMBL	CDS	2758926	2759345	.	-	0	ID=cds2493;Parent=gene2543;Dbxref=EnsemblGenomes-Gn:azo2495,EnsemblGenomes-Tr:CAL95112,GOA:A1K8F7,InterPro:IPR006683,InterPro:IPR029069,UniProtKB/TrEMBL:A1K8F7,NCBI_GP:CAL95112.1;Name=CAL95112.1;Note=4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23). This family contains a wide variety of enzymes%2Cprincipally thioesterases. This family includes 4HBT which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3 InterPro:IPR008272%3B 4HBcoA_thiost_AS. IPR006683%3B Thioestr_supf. Pfam:PF03061%3B 4HBT InterPro: 4-hydroxybenzoyl-CoA thioesterase family active site No signal peptide No transmembrane helices TIGR00051: conserved hypothetical protein%3B~High confidence in function and specificity;gbkey=CDS;gene=fcbC1;product=probable thiesterase;protein_id=CAL95112.1;transl_table=11
AM406670.1	EMBL	gene	2759364	2760131	.	-	.	ID=gene2544;Name=azo2496;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2496
AM406670.1	EMBL	CDS	2759364	2760131	.	-	0	ID=cds2494;Parent=gene2544;Dbxref=EnsemblGenomes-Gn:azo2496,EnsemblGenomes-Tr:CAL95113,GOA:A1K8F8,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:A1K8F8,NCBI_GP:CAL95113.1;Name=CAL95113.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2C%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL95113.1;transl_table=11
AM406670.1	EMBL	gene	2760328	2761587	.	-	.	ID=gene2545;Name=paaJ2;gbkey=Gene;gene=paaJ2;gene_biotype=protein_coding;locus_tag=azo2497
AM406670.1	EMBL	CDS	2760328	2761587	.	-	0	ID=cds2495;Parent=gene2545;Dbxref=EnsemblGenomes-Gn:azo2497,EnsemblGenomes-Tr:CAL95114,GOA:A1K8F9,InterPro:IPR002155,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR020610,InterPro:IPR020613,InterPro:IPR020616,InterPro:IPR020617,UniProtKB/TrEMBL:A1K8F9,NCBI_GP:CAL95114.1;Name=CAL95114.1;Note=Thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA (By similarity). Entry name PAAJ_ECOLI Primary accession number P77525 Identity: 150/410 (36%25) InterPro IPR002155%3B Thiolase. Pfam PF02803%3B Thiolase_C%3B 1. Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.000%3B~Family membership;gbkey=CDS;gene=paaJ2;product=putative beta-ketoadipyl CoA thiolase;protein_id=CAL95114.1;transl_table=11
AM406670.1	EMBL	gene	2761584	2762369	.	-	.	ID=gene2546;Name=paaG3;gbkey=Gene;gene=paaG3;gene_biotype=protein_coding;locus_tag=azo2498
AM406670.1	EMBL	CDS	2761584	2762369	.	-	0	ID=cds2496;Parent=gene2546;Dbxref=EnsemblGenomes-Gn:azo2498,EnsemblGenomes-Tr:CAL95115,GOA:A1K8G0,InterPro:IPR001753,InterPro:IPR018376,InterPro:IPR029045,UniProtKB/TrEMBL:A1K8G0,NCBI_GP:CAL95115.1;Name=CAL95115.1;Note=Entry name SWISSPROT:PAAG_ECOLI InterPro :-IPR001753%3B EnCoA_hydrtse. Identities %3D 62/250 (24%25) Pfam:-PF00378%3B ECH%3B 1. function:-Could possibly oxidizes fatty acids using specific components (by similarity). catalytic activity :-(3s)-3-hydroxyacyl-coa %3D trans-2(or 3)-enoyl-coa + h(2)o. Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=paaG3;product=putative enoyl-CoA hydratase;protein_id=CAL95115.1;transl_table=11
AM406670.1	EMBL	gene	2762390	2764258	.	-	.	ID=gene2547;Name=fadD2;gbkey=Gene;gene=fadD2;gene_biotype=protein_coding;locus_tag=azo2499
AM406670.1	EMBL	CDS	2762390	2764258	.	-	0	ID=cds2497;Parent=gene2547;Dbxref=EnsemblGenomes-Gn:azo2499,EnsemblGenomes-Tr:CAL95116,GOA:A1K8G1,InterPro:IPR000873,UniProtKB/TrEMBL:A1K8G1,NCBI_GP:CAL95116.1;Name=CAL95116.1;Note=Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (Long-chain acyl-CoA synthetase). Esterification concomitant with transport of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids%2C TREMBL:Q89CF2 (46%25 identity)%3B TREMBL:Q89CJ5 (44%25 identity). Pfam (PF00501): AMP-binding enzyme.%3B~Specificity unclear;gbkey=CDS;gene=fadD2;product=Long-chain-fatty-acid-CoA ligase;protein_id=CAL95116.1;transl_table=11
AM406670.1	EMBL	gene	2764287	2765432	.	-	.	ID=gene2548;Name=livK2;gbkey=Gene;gene=livK2;gene_biotype=protein_coding;locus_tag=azo2500
AM406670.1	EMBL	CDS	2764287	2765432	.	-	0	ID=cds2498;Parent=gene2548;Dbxref=EnsemblGenomes-Gn:azo2500,EnsemblGenomes-Tr:CAL95117,GOA:A1K8G2,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1K8G2,NCBI_GP:CAL95117.1;Name=CAL95117.1;Note=In enteric bacteria such as E. coli and Salmonella typhimurium%2C periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar sprot|LIVK_ECOLI (21%25) and to trembl|Q9RYP6 (50%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=livK2;product=putative leucine-specific binding protein;protein_id=CAL95117.1;transl_table=11
AM406670.1	EMBL	gene	2765867	2766628	.	-	.	ID=gene2549;Name=azo2501;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2501
AM406670.1	EMBL	CDS	2765867	2766628	.	-	0	ID=cds2499;Parent=gene2549;Dbxref=EnsemblGenomes-Gn:azo2501,EnsemblGenomes-Tr:CAL95118,GOA:A1K276,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K276,NCBI_GP:CAL95118.1;Name=CAL95118.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q8XRX4 (66%25) and to trembl|Q89PQ7 (62%25). Smart: AAA ATPases%3B~Specificity unclear;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL95118.1;transl_table=11
AM406670.1	EMBL	gene	2766628	2768421	.	-	.	ID=gene2550;Name=azo2502;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2502
AM406670.1	EMBL	CDS	2766628	2768421	.	-	0	ID=cds2500;Parent=gene2550;Dbxref=EnsemblGenomes-Gn:azo2502,EnsemblGenomes-Tr:CAL95119,GOA:A1K8G4,InterPro:IPR001851,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1K8G4,NCBI_GP:CAL95119.1;Name=CAL95119.1;Note=Probable branched-chain amino acid ABC transporter%2CATP binding protein%2C%3B~Specificity unclear;gbkey=CDS;product=probable branched-chain amino acid ABC transporter;protein_id=CAL95119.1;transl_table=11
AM406670.1	EMBL	gene	2768487	2769524	.	-	.	ID=gene2551;Name=azo2503;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2503
AM406670.1	EMBL	CDS	2768487	2769524	.	-	0	ID=cds2501;Parent=gene2551;Dbxref=EnsemblGenomes-Gn:azo2503,EnsemblGenomes-Tr:CAL95120,GOA:A1K274,InterPro:IPR001851,UniProtKB/TrEMBL:A1K274,NCBI_GP:CAL95120.1;Name=CAL95120.1;Note=Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q7W5E8 (62%25)%2C to sprot|BRAD_PSEAE (25%25) and to sprot|LIVH_ECOLI (26%25). Pfam (PF02653): Branched-chain amino acid transport system / permease component TMHMM reporting nine Tmhelix.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease protein;protein_id=CAL95120.1;transl_table=11
AM406670.1	EMBL	gene	2769967	2770881	.	+	.	ID=gene2552;Name=azo2504;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2504
AM406670.1	EMBL	CDS	2769967	2770881	.	+	0	ID=cds2502;Parent=gene2552;Dbxref=EnsemblGenomes-Gn:azo2504,EnsemblGenomes-Tr:CAL95121,GOA:A1K8G6,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,UniProtKB/TrEMBL:A1K8G6,NCBI_GP:CAL95121.1;Name=CAL95121.1;Note=Putative TetR family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative TetR family transcriptional regulator;protein_id=CAL95121.1;transl_table=11
AM406670.1	EMBL	gene	2771064	2771702	.	+	.	ID=gene2553;Name=azo2505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2505
AM406670.1	EMBL	CDS	2771064	2771702	.	+	0	ID=cds2503;Parent=gene2553;Dbxref=EnsemblGenomes-Gn:azo2505,EnsemblGenomes-Tr:CAL95122,GOA:A1K8G7,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015893,InterPro:IPR017956,UniProtKB/TrEMBL:A1K8G7,NCBI_GP:CAL95122.1;Name=CAL95122.1;Note=Putative TetR family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative TetR family transcriptional regulator;protein_id=CAL95122.1;transl_table=11
AM406670.1	EMBL	gene	2771799	2772377	.	+	.	ID=gene2554;Name=cmd;gbkey=Gene;gene=cmd;gene_biotype=protein_coding;locus_tag=azo2506
AM406670.1	EMBL	CDS	2771799	2772377	.	+	0	ID=cds2504;Parent=gene2554;Dbxref=EnsemblGenomes-Gn:azo2506,EnsemblGenomes-Tr:CAL95123,GOA:A1K8G8,InterPro:IPR003779,InterPro:IPR004675,InterPro:IPR010195,InterPro:IPR029032,UniProtKB/TrEMBL:A1K8G8,NCBI_GP:CAL95123.1;Name=CAL95123.1;Note=Conserved hypothetical protein. The highly identitcal hits such as Hypothetical Proteins of TrEMBL%3BQ8XXB7%2CQ6N0V6(80%25 identity) do not share all the domains as this Protein. Has Carboxymuconolactone decarboxylase family%3BIPR003779%2C CMD:The catechol and protocatechuate branches of the 3-oxoadipate pathway%2Cwhich areimportant for the bacterial degradation of aromatic compounds%2C converge at the common intermediate 3-oxoadipate enol-lactone. Carboxymuconolactone decarboxylase is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway.%3B~Specificity unclear;gbkey=CDS;gene=cmd;product=4-carboxymuconolactone decarboxylase;protein_id=CAL95123.1;transl_table=11
AM406670.1	EMBL	gene	2772486	2772884	.	-	.	ID=gene2555;Name=azo2507;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2507
AM406670.1	EMBL	CDS	2772486	2772884	.	-	0	ID=cds2505;Parent=gene2555;Dbxref=EnsemblGenomes-Gn:azo2507,EnsemblGenomes-Tr:CAL95124,UniProtKB/TrEMBL:A1K8G9,NCBI_GP:CAL95124.1;Name=CAL95124.1;Note=Hypothetical membrane protein. no homology of the entire protein to the data bank. no domains predicted. no signal peptide. 2 TMHS;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95124.1;transl_table=11
AM406670.1	EMBL	gene	2772945	2773253	.	-	.	ID=gene2556;Name=azo2508;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2508
AM406670.1	EMBL	CDS	2772945	2773253	.	-	0	ID=cds2506;Parent=gene2556;Dbxref=EnsemblGenomes-Gn:azo2508,EnsemblGenomes-Tr:CAL95125,UniProtKB/TrEMBL:A1K8H0,NCBI_GP:CAL95125.1;Name=CAL95125.1;Note=Conserved hypothetical protein. Homology to Daro03003856 of Dechloromonas aromatica of 41%25 (gi|46140330|ref|ZP_00203564.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95125.1;transl_table=11
AM406670.1	EMBL	gene	2773297	2775222	.	-	.	ID=gene2557;Name=azo2509;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2509
AM406670.1	EMBL	CDS	2773297	2775222	.	-	0	ID=cds2507;Parent=gene2557;Dbxref=EnsemblGenomes-Gn:azo2509,EnsemblGenomes-Tr:CAL95126,GOA:A1K8H1,InterPro:IPR006158,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR023404,InterPro:IPR023970,UniProtKB/TrEMBL:A1K8H1,NCBI_GP:CAL95126.1;Name=CAL95126.1;Note=Conserved hypothetical protein. Homology to cv0086 of C. violaceum of 76%25 (trembl|Q7P1X6). no signal peptide. no TMHs. No domains reported.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95126.1;transl_table=11
AM406670.1	EMBL	gene	2775497	2775781	.	-	.	ID=gene2558;Name=azo2510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2510
AM406670.1	EMBL	CDS	2775497	2775781	.	-	0	ID=cds2508;Parent=gene2558;Dbxref=EnsemblGenomes-Gn:azo2510,EnsemblGenomes-Tr:CAL95127,GOA:A1K8H2,InterPro:IPR015879,UniProtKB/TrEMBL:A1K8H2,NCBI_GP:CAL95127.1;Name=CAL95127.1;Note=Bacterial ring hydroxylating dioxygenase%2Csmall subunit. Similar to AlcE: iron-sulfur-containing dioxygenases%2C probably involved in alcaligin biosynthesis pathway in Bordetella species. Putative iron-sulfure protein involved in aromatic compounds degradations. Rieske [2Fe-2S] domain present. Probable Choline monooxygenase chloroplast precursor (EC 1.14.15.7). nadp_idh_euk: isocitrate dehydrogenase%3B~Function unclear;gbkey=CDS;product=putative iron-sulfur protein;protein_id=CAL95127.1;transl_table=11
AM406670.1	EMBL	gene	2776065	2778491	.	-	.	ID=gene2559;Name=fpvA1;gbkey=Gene;gene=fpvA1;gene_biotype=protein_coding;locus_tag=azo2511
AM406670.1	EMBL	CDS	2776065	2778491	.	-	0	ID=cds2509;Parent=gene2559;Dbxref=EnsemblGenomes-Gn:azo2511,EnsemblGenomes-Tr:CAL95128,GOA:A1K8H3,InterPro:IPR000531,InterPro:IPR010105,InterPro:IPR011662,InterPro:IPR012910,UniProtKB/TrEMBL:A1K8H3,NCBI_GP:CAL95128.1;Name=CAL95128.1;Note=Iron-regulated outer membrane protein. TonB-dependent receptor protein. Homolog to fpvA%2C a ferripyoverdine receptor precursor in P. aeruginosa. Similar to PupA protein of P. putida WCS%2Cthis protein is a receptor for the iron-bound form of pesudobactin%2C a compound structurally very%3B~High confidence in function and specificity;gbkey=CDS;gene=fpvA1;product=putative TonB-dependent receptor;protein_id=CAL95128.1;transl_table=11
AM406670.1	EMBL	gene	2778614	2779630	.	-	.	ID=gene2560;Name=azo2512;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2512
AM406670.1	EMBL	CDS	2778614	2779630	.	-	0	ID=cds2510;Parent=gene2560;Dbxref=EnsemblGenomes-Gn:azo2512,EnsemblGenomes-Tr:CAL95129,GOA:A1K8H4,InterPro:IPR006860,InterPro:IPR012373,UniProtKB/TrEMBL:A1K8H4,NCBI_GP:CAL95129.1;Name=CAL95129.1;Note=Probable FecR-like transmembrane sensor involved in iron metabolism. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.%3B~High confidence in function and specificity;gbkey=CDS;product=putative transmembrane sensor;protein_id=CAL95129.1;transl_table=11
AM406670.1	EMBL	gene	2779714	2780268	.	-	.	ID=gene2561;Name=azo2513;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2513
AM406670.1	EMBL	CDS	2779714	2780268	.	-	0	ID=cds2511;Parent=gene2561;Dbxref=EnsemblGenomes-Gn:azo2513,EnsemblGenomes-Tr:CAL95130,GOA:A1K8H5,InterPro:IPR007627,InterPro:IPR011991,InterPro:IPR013249,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:A1K8H5,NCBI_GP:CAL95130.1;Name=CAL95130.1;Note=Probable fecI-like RNA polymerase sigma factor. THE SIGMA FACTOR IS AN INITIATION FACTOR THAT PROMOTES ATTACHMENT OF THE RNA POLYMERASE TO SPECIFIC INITIATION SITES AND THEN IS RELEASED. THIS SIGMA FACTOR REGULATES THE FEC GENES FOR IRON DICITRATE TRANSPORT (PROBABLE). InterPro: Sigma factor ECF subfamily%3B~Specificity unclear;gbkey=CDS;product=putative sigma factor%2C ECF subfamily;protein_id=CAL95130.1;transl_table=11
AM406670.1	EMBL	gene	2780947	2781264	.	-	.	ID=gene2562;Name=nagAb;gbkey=Gene;gene=nagAb;gene_biotype=protein_coding;locus_tag=azo2514
AM406670.1	EMBL	CDS	2780947	2781264	.	-	0	ID=cds2512;Parent=gene2562;Dbxref=EnsemblGenomes-Gn:azo2514,EnsemblGenomes-Tr:CAL95131,GOA:A1K8H6,InterPro:IPR017941,UniProtKB/TrEMBL:A1K8H6,NCBI_GP:CAL95131.1;Name=CAL95131.1;Note=Naphthalene 12-dioxygenase system ferredoxin component. COMPONENT OF NAPHTHALENE DIOXYGENASE (NDO) MULTICOMPONENT ENZYME SYSTEM WHICH CATALYZES THE INCORPORATION OF BOTH ATOMS OF MOLECULAR OXYGEN INTO NAPHTHALENE TO FORM CIS- NAPHTHALENE DIHYDRODIOL. THIS SUBUNIT IS A 2FE-2S FERREDOXIN THAT TRANSFERS ELECTRONS TO IRON SULFUR PROTEIN COMPONENTS (ISP).%3B~High confidence in function and specificity;gbkey=CDS;gene=nagAb;product=putative ferredoxin;protein_id=CAL95131.1;transl_table=11
AM406670.1	EMBL	gene	2781315	2781818	.	-	.	ID=gene2563;Name=nagH;gbkey=Gene;gene=nagH;gene_biotype=protein_coding;locus_tag=azo2515
AM406670.1	EMBL	CDS	2781315	2781818	.	-	0	ID=cds2513;Parent=gene2563;Dbxref=EnsemblGenomes-Gn:azo2515,EnsemblGenomes-Tr:CAL95132,GOA:A1K8H7,UniProtKB/TrEMBL:A1K8H7,NCBI_GP:CAL95132.1;Name=CAL95132.1;Note=NagH: probable salicylate-5-hydroxylase small oxygenase component oxidoreductase protein. Involved in conversion of Naphthalene to gentisate. Aromatic compounds degradation.%3B~Family membership;gbkey=CDS;gene=nagH;product=putative ring hydroxylating beta subunit;protein_id=CAL95132.1;transl_table=11
AM406670.1	EMBL	gene	2781815	2783131	.	-	.	ID=gene2564;Name=nagG;gbkey=Gene;gene=nagG;gene_biotype=protein_coding;locus_tag=azo2516
AM406670.1	EMBL	CDS	2781815	2783131	.	-	0	ID=cds2514;Parent=gene2564;Dbxref=EnsemblGenomes-Gn:azo2516,EnsemblGenomes-Tr:CAL95133,GOA:A1K8H8,InterPro:IPR001663,InterPro:IPR015879,InterPro:IPR015881,InterPro:IPR017941,UniProtKB/TrEMBL:A1K8H8,NCBI_GP:CAL95133.1;Name=CAL95133.1;Note=nagG%2CRSc1090:putative salicylate-5-hydroxylase large oxygenase component oxidoreductase protein [EC:1.-.-.-]. Rieske-type iron-sulfur center homologous to the large subunits of dihydroxylating dioxygenases. Involved in conversion of Naphthalene to gentisate. Aromatic compounds degradation. Biphenyl dioxygenase alpha subunit (EC 1.14.12.18) (Biphenyl 23- dioxygenase).%3B~High confidence in function and specificity;gbkey=CDS;gene=nagG;product=putative ring hydroxylating large subunit;protein_id=CAL95133.1;transl_table=11
AM406670.1	EMBL	gene	2783542	2784528	.	-	.	ID=gene2565;Name=nagAa;gbkey=Gene;gene=nagAa;gene_biotype=protein_coding;locus_tag=azo2517
AM406670.1	EMBL	CDS	2783542	2784528	.	-	0	ID=cds2515;Parent=gene2565;Dbxref=EnsemblGenomes-Gn:azo2517,EnsemblGenomes-Tr:CAL95134,GOA:A1K8H9,InterPro:IPR001041,InterPro:IPR001221,InterPro:IPR001433,InterPro:IPR006058,InterPro:IPR008333,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K8H9,NCBI_GP:CAL95134.1;Name=CAL95134.1;Note=Naphthalene 12-dioxygenase system ferredoxin--NAD(+) reductase component COMPONENT OF NAPHTHALENE DIOXYGENASE (NDO) MULTICOMPONENT ENZYME SYSTEM WHICH CATALYZES THE INCORPORATION OF BOTH ATOMS OF MOLECULAR OXYGEN INTO NAPHTHALENE TO FORM CIS- NAPHTHALENE DIHYDRODIOL. TRANSFERS ELECTRONS FROM FERREDOXIN (NDOA) TO NADH.%3B~High confidence in function and specificity;gbkey=CDS;gene=nagAa;product=Naphthalene 1%2C2-dioxygenase / Ferredoxin--NAD(+) reductase;protein_id=CAL95134.1;transl_table=11
AM406670.1	EMBL	gene	2784640	2785581	.	+	.	ID=gene2566;Name=nahR2;gbkey=Gene;gene=nahR2;gene_biotype=protein_coding;locus_tag=azo2518
AM406670.1	EMBL	CDS	2784640	2785581	.	+	0	ID=cds2516;Parent=gene2566;Dbxref=EnsemblGenomes-Gn:azo2518,EnsemblGenomes-Tr:CAL95135,GOA:A1K8I0,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K8I0,NCBI_GP:CAL95135.1;Name=CAL95135.1;Note=LysR-type transcriptional regulator NahR Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes. Similar to SWISSPROT: sprot|NAHR_PSEPU (61%25 Pseudomonas putida%2C nahR) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2ClysR family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=nahR2;product=LysR-family transcriptional regulator;protein_id=CAL95135.1;transl_table=11
AM406670.1	EMBL	gene	2785687	2787012	.	-	.	ID=gene2567;Name=dctM5;gbkey=Gene;gene=dctM5;gene_biotype=protein_coding;locus_tag=azo2519
AM406670.1	EMBL	CDS	2785687	2787012	.	-	0	ID=cds2517;Parent=gene2567;Dbxref=EnsemblGenomes-Gn:azo2519,EnsemblGenomes-Tr:CAL95136,GOA:A1K8I1,InterPro:IPR004681,InterPro:IPR010656,UniProtKB/TrEMBL:A1K8I1,NCBI_GP:CAL95136.1;Name=CAL95136.1;Note=TRAP-type C4-dicarboxylate transport system%2C large permease component%2CDctM. The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate%2Csuccinate%2C and fumarate. 25%25 DctM.IPR000252%3B DedA.IPR000524%3B HTH_GntR.IPR004681%3B TRAP_transptDctM. Pfam:PF06808%3B DctM%3B 1.PF00597%3B DedA%3B 1. TIGRFAMs:TIGR00786%3B dctM%3B 1. TMHelix: 11.%3B~Specificity unclear;gbkey=CDS;gene=dctM5;product=probable TRAP-type C4 dicarboxylate transport system%2C large permease;protein_id=CAL95136.1;transl_table=11
AM406670.1	EMBL	gene	2787009	2787533	.	-	.	ID=gene2568;Name=azo2520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2520
AM406670.1	EMBL	CDS	2787009	2787533	.	-	0	ID=cds2518;Parent=gene2568;Dbxref=EnsemblGenomes-Gn:azo2520,EnsemblGenomes-Tr:CAL95137,InterPro:IPR007387,UniProtKB/TrEMBL:A1K8I2,NCBI_GP:CAL95137.1;Name=CAL95137.1;Note=Conserved hypothetical membrane protein. Homology to PM1526 of Pasteurella multocida of 32%25 (trembl|Q9CKT0(SRS)). Pfam: PF04290%3BIPR007387%3BTripartite ATP-independent periplasmic transporters%2C DctQ component%3B The function of the members of this family is unknown%2C but DctQ homologues are invariably found in the tripartite ATP-independent periplasmic transporters. No signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95137.1;transl_table=11
AM406670.1	EMBL	gene	2787622	2788647	.	-	.	ID=gene2569;Name=dctP5;gbkey=Gene;gene=dctP5;gene_biotype=protein_coding;locus_tag=azo2521
AM406670.1	EMBL	CDS	2787622	2788647	.	-	0	ID=cds2519;Parent=gene2569;Dbxref=EnsemblGenomes-Gn:azo2521,EnsemblGenomes-Tr:CAL95138,GOA:A1K8I3,InterPro:IPR018389,UniProtKB/TrEMBL:A1K8I3,NCBI_GP:CAL95138.1;Name=CAL95138.1;Note=TRAP-dicarboxylate transporter. Binds c4-dicarboxylates%3B part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 23%25 TRAP_transptDctP. Pfam:PF03480%3B SBP_bac_7%3B 1. TIGRFAMs:TIGR00787%3B dctP%3B 1. Signal peptide: present.%3B~Specificity unclear;gbkey=CDS;gene=dctP5;product=putative C4-dicarboxylate-binding periplasmic protein;protein_id=CAL95138.1;transl_table=11
AM406670.1	EMBL	gene	2788910	2789752	.	-	.	ID=gene2570;Name=ligB1;gbkey=Gene;gene=ligB1;gene_biotype=protein_coding;locus_tag=azo2522
AM406670.1	EMBL	CDS	2788910	2789752	.	-	0	ID=cds2520;Parent=gene2570;Dbxref=EnsemblGenomes-Gn:azo2522,EnsemblGenomes-Tr:CAL95139,GOA:A1K8I4,InterPro:IPR004183,UniProtKB/TrEMBL:A1K8I4,NCBI_GP:CAL95139.1;Name=CAL95139.1;Note=Protocatechuate 4%2C5-dioxygenase beta chain subunit%2Chaving 63%25 similarity(48%25 identity)to TrEMBL%3BQ8PP10%2CProtocatechuate 3%2C4-dioxygenase beta chain [pcaH] [Xanthomonas axonopodis (pv. citri)] Swiss-Prot: P22636 PF02900%3BIPR004183 %3BCatalytic LigB subunit of aromatic ring-opening dioxygenase.The LigAB enzyme (a protocatechuate 4%2C5-dioxygenase EC: 1.13.11.8)%2C of Sphingomonas paucimobilis oxidizes protocatechuate (or 3%2C4-dihydroxybenzoic acid%2C PCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family%2Cwhich catalyzes the ring-opening reaction of protocatechuate and related compounds . Other members of this family include 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase (EC: 1.13.11.15) and 2%2C3-dihydroxyphenylpropionate 1%2C2-dioxygenase. No Signal peptide or TMH reported present.%3B~High confidence in function and specificity;gbkey=CDS;gene=ligB1;product=Protocatechuate 4%2C5-dioxygenase beta chain;protein_id=CAL95139.1;transl_table=11
AM406670.1	EMBL	gene	2789756	2790106	.	-	.	ID=gene2571;Name=ligA1;gbkey=Gene;gene=ligA1;gene_biotype=protein_coding;locus_tag=azo2523
AM406670.1	EMBL	CDS	2789756	2790106	.	-	0	ID=cds2521;Parent=gene2571;Dbxref=EnsemblGenomes-Gn:azo2523,EnsemblGenomes-Tr:CAL95140,GOA:A1K8I5,InterPro:IPR011986,UniProtKB/TrEMBL:A1K8I5,NCBI_GP:CAL95140.1;Name=CAL95140.1;Note=Protocatechuate 4%2C5-dioxygenase alpha subunit%2C 39%25 Identity to TrEMBL%3BQ6N0R0%2CQ6NB24%2C Q9KWL5. Has PF07746Aromatic-ring-opening dioxygenase LigAB%2C LigA subunit%3B TMHMM2 reports 1 TMH.;gbkey=CDS;gene=ligA1;product=protocatechuate 4%2C5-dioxygenase;protein_id=CAL95140.1;transl_table=11
AM406670.1	EMBL	gene	2790194	2791156	.	+	.	ID=gene2572;Name=pnbR;gbkey=Gene;gene=pnbR;gene_biotype=protein_coding;locus_tag=azo2524
AM406670.1	EMBL	CDS	2790194	2791156	.	+	0	ID=cds2522;Parent=gene2572;Dbxref=EnsemblGenomes-Gn:azo2524,EnsemblGenomes-Tr:CAL95141,GOA:A1K8I6,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K8I6,NCBI_GP:CAL95141.1;Name=CAL95141.1;Note=Transcriptional regulator%2C LysR family%2C%3B~Specificity unclear;gbkey=CDS;gene=pnbR;product=transcriptional regulator%2C LysR family;protein_id=CAL95141.1;transl_table=11
AM406670.1	EMBL	gene	2791543	2793033	.	+	.	ID=gene2573;Name=azo2525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2525
AM406670.1	EMBL	CDS	2791543	2793033	.	+	0	ID=cds2523;Parent=gene2573;Dbxref=EnsemblGenomes-Gn:azo2525,EnsemblGenomes-Tr:CAL95142,InterPro:IPR000305,InterPro:IPR027299,UniProtKB/TrEMBL:A1K8I7,NCBI_GP:CAL95142.1;Name=CAL95142.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. Pfam: Endo/excinuclease amino terminal domain. no signal peptide. no TMHs. HTH predicted;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95142.1;transl_table=11
AM406670.1	EMBL	gene	2793435	2794322	.	-	.	ID=gene2574;Name=pobR2;gbkey=Gene;gene=pobR2;gene_biotype=protein_coding;locus_tag=azo2526
AM406670.1	EMBL	CDS	2793435	2794322	.	-	0	ID=cds2524;Parent=gene2574;Dbxref=EnsemblGenomes-Gn:azo2526,EnsemblGenomes-Tr:CAL95143,GOA:A1K8I8,InterPro:IPR009057,InterPro:IPR011051,InterPro:IPR014710,InterPro:IPR018060,InterPro:IPR020449,UniProtKB/TrEMBL:A1K8I8,NCBI_GP:CAL95143.1;Name=CAL95143.1;Note=Transcriptional regulator%2C AraC family%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=pobR2;product=transcriptional regulator%2C AraC family;protein_id=CAL95143.1;transl_table=11
AM406670.1	EMBL	gene	2794548	2795711	.	+	.	ID=gene2575;Name=azo2527;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2527
AM406670.1	EMBL	CDS	2794548	2795711	.	+	0	ID=cds2525;Parent=gene2575;Dbxref=EnsemblGenomes-Gn:azo2527,EnsemblGenomes-Tr:CAL95144,GOA:A1K8I9,InterPro:IPR001128,InterPro:IPR002397,UniProtKB/TrEMBL:A1K8I9,NCBI_GP:CAL95144.1;Name=CAL95144.1;Note=Cytochrome P450s are involved in the oxidative degradation of various compounds. Particularly well known for their role in the degradation of environmental toxins and mutagens. Similar to SWISSPROT:P77902 (30%25 identity)%3B TREMBL:Q59910 (32%25 identity)%3B SWISSPROT:O34374 (28%25 identity). Pfam (PF00067): Cytochrome P450.%3B~Family membership;gbkey=CDS;product=Cytochrome P450 family protein;protein_id=CAL95144.1;transl_table=11
AM406670.1	EMBL	gene	2795797	2796120	.	+	.	ID=gene2576;Name=fdxP;gbkey=Gene;gene=fdxP;gene_biotype=protein_coding;locus_tag=azo2528
AM406670.1	EMBL	CDS	2795797	2796120	.	+	0	ID=cds2526;Parent=gene2576;Dbxref=EnsemblGenomes-Gn:azo2528,EnsemblGenomes-Tr:CAL95145,GOA:A1K8J0,InterPro:IPR001041,InterPro:IPR001055,InterPro:IPR012675,InterPro:IPR018298,UniProtKB/TrEMBL:A1K8J0,NCBI_GP:CAL95145.1;Name=CAL95145.1;Note=Probable ferredoxin. Homology to fdxP of C. crescentus of 51%25 (sprot|FER2_CAUCR). Ferredons are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. InterPro: Ferredoxin (IPR001041)%2CAdrenodoxin (IPR001055) Pfam: 2Fe-2S iron-sulfur cluster binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fdxP;product=probable ferrodoxin;protein_id=CAL95145.1;transl_table=11
AM406670.1	EMBL	gene	2796181	2797398	.	+	.	ID=gene2577;Name=camA;gbkey=Gene;gene=camA;gene_biotype=protein_coding;locus_tag=azo2529
AM406670.1	EMBL	CDS	2796181	2797398	.	+	0	ID=cds2527;Parent=gene2577;Dbxref=EnsemblGenomes-Gn:azo2529,EnsemblGenomes-Tr:CAL95146,GOA:A1K8J1,InterPro:IPR001327,InterPro:IPR004099,InterPro:IPR013027,InterPro:IPR016156,InterPro:IPR023753,InterPro:IPR028202,UniProtKB/TrEMBL:A1K8J1,NCBI_GP:CAL95146.1;Name=CAL95146.1;Note=Probable putidaredoxin reductase (EC 1.18.1.-). Homology to camA of P. putida of 48%25 (sprot|CAMA_PSEPU). The oxidation of camphor by cytochrome p450-cam requires the participation of a flavoprotein%2C putidaredoxin reductase%2C and an iron-sulfur protein%2C putidaredoxin%2C to mediate the transfer of electrons from nadh to p450 for oxygen activation. Interpro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IRP001327)%2C NAD binding site (IPR000205) Pfam: Pyridine nucleotide-disulphide oxidoreductase no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=camA;product=probable putidaredoxin reductase;protein_id=CAL95146.1;transl_table=11
AM406670.1	EMBL	gene	2797558	2798433	.	+	.	ID=gene2578;Name=azo2530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2530
AM406670.1	EMBL	CDS	2797558	2798433	.	+	0	ID=cds2528;Parent=gene2578;Dbxref=EnsemblGenomes-Gn:azo2530,EnsemblGenomes-Tr:CAL95147,InterPro:IPR001279,UniProtKB/TrEMBL:A1K8J2,NCBI_GP:CAL95147.1;Name=CAL95147.1;Note=Hypothetical protein yqgX. 65%25 identity%2C 75%25 similarity to conserved hypothetical protein (TREMBL:Q7P219) InterPro%3B TREMBL:Q7WQV2%3B Metallo-beta-lactamase superfamily. Pfam: Aminotransferase class III%3B helper component proteinase TREMBL:Q9DCMO-RIKEN cDNA%3B TREMBL:Q9A911 - GlyoxlaseII superfamily protein. TIGR00162: conserved hypothetical protein. Signal peptide-nonsecretory protein%3B Transmembrane helices present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95147.1;transl_table=11
AM406670.1	EMBL	gene	2798436	2799140	.	-	.	ID=gene2579;Name=azo2531;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2531
AM406670.1	EMBL	CDS	2798436	2799140	.	-	0	ID=cds2529;Parent=gene2579;Dbxref=EnsemblGenomes-Gn:azo2531,EnsemblGenomes-Tr:CAL95148,InterPro:IPR017926,InterPro:IPR029062,UniProtKB/TrEMBL:A1K8J3,NCBI_GP:CAL95148.1;Name=CAL95148.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95148.1;transl_table=11
AM406670.1	EMBL	gene	2799319	2799741	.	+	.	ID=gene2580;Name=azo2532;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2532
AM406670.1	EMBL	CDS	2799319	2799741	.	+	0	ID=cds2530;Parent=gene2580;Dbxref=EnsemblGenomes-Gn:azo2532,EnsemblGenomes-Tr:CAL95149,UniProtKB/TrEMBL:A1K8J4,NCBI_GP:CAL95149.1;Name=CAL95149.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95149.1;transl_table=11
AM406670.1	EMBL	gene	2799878	2801560	.	+	.	ID=gene2581;Name=fliC1;gbkey=Gene;gene=fliC1;gene_biotype=protein_coding;locus_tag=azo2533
AM406670.1	EMBL	CDS	2799878	2801560	.	+	0	ID=cds2531;Parent=gene2581;Dbxref=EnsemblGenomes-Gn:azo2533,EnsemblGenomes-Tr:CAL95150,GOA:A1K8J5,InterPro:IPR001029,InterPro:IPR001492,UniProtKB/TrEMBL:A1K8J5,NCBI_GP:CAL95150.1;Name=CAL95150.1;Note=Flagellin (Phase-1-D flagellin). Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. InterPro: Flagellin N-terminus%2CFlagellin C-terminus Pfam: Bacterial flagellin N-terminus%2Cbacterial flagellin C-terminus no signal peptide no TMH%3B~Family membership;gbkey=CDS;gene=fliC1;product=putative flagellin;protein_id=CAL95150.1;transl_table=11
AM406670.1	EMBL	gene	2801557	2802510	.	-	.	ID=gene2582;Name=mdcF2;gbkey=Gene;gene=mdcF2;gene_biotype=protein_coding;locus_tag=azo2534
AM406670.1	EMBL	CDS	2801557	2802510	.	-	0	ID=cds2532;Parent=gene2582;Dbxref=EnsemblGenomes-Gn:azo2534,EnsemblGenomes-Tr:CAL95151,GOA:A1K8J6,InterPro:IPR004776,UniProtKB/TrEMBL:A1K8J6,NCBI_GP:CAL95151.1;Name=CAL95151.1;Note=Putative malonate transporter. TREMBL:Q7ML40: 38%25 identity%2C 55%25 similarity SPROT:P56949: 27%25 identity%2C 44%25 similarity subcellular location:integral membrane protein (potential). similarity:belongs to the auxin efflux carrier (tc 2.a.69) family. InterPro:IPR004776%3B Auxin_eff. Pfam: PF03547%3B Auxin_eff%3B GntP_permease%3BGntP family permease (Pfam) 2a69: Auxin Efflux Carrier Signal P predicted signal peptide and TMHMM predicted 10 transmembrane helices%3B~Specificity unclear;gbkey=CDS;gene=mdcF2;product=putative malonate transporter;protein_id=CAL95151.1;transl_table=11
AM406670.1	EMBL	gene	2802611	2803606	.	-	.	ID=gene2583;Name=yakC;gbkey=Gene;gene=yakC;gene_biotype=protein_coding;locus_tag=azo2535
AM406670.1	EMBL	CDS	2802611	2803606	.	-	0	ID=cds2533;Parent=gene2583;Dbxref=EnsemblGenomes-Gn:azo2535,EnsemblGenomes-Tr:CAL95152,GOA:A1K8J7,InterPro:IPR001395,InterPro:IPR020471,InterPro:IPR023210,UniProtKB/TrEMBL:A1K8J7,NCBI_GP:CAL95152.1;Name=CAL95152.1;Note=Probable aldo-keto reductase. Homology to yakC of S.pombe of 43%25 (sprot|YAKC_SCHPO). Catalyze the reduction of 2-nitorbenzaldehyde%2C pyridine-2-aldehyde and 2-phthaladehyde. Pfam: Aldo/Keto reductase signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=yakC;product=probable aldo-keto reductase;protein_id=CAL95152.1;transl_table=11
AM406670.1	EMBL	gene	2804153	2805112	.	-	.	ID=gene2584;Name=ligC;gbkey=Gene;gene=ligC;gene_biotype=protein_coding;locus_tag=azo2536
AM406670.1	EMBL	CDS	2804153	2805112	.	-	0	ID=cds2534;Parent=gene2584;Dbxref=EnsemblGenomes-Gn:azo2536,EnsemblGenomes-Tr:CAL95153,GOA:A1K8J8,InterPro:IPR000683,InterPro:IPR016040,UniProtKB/TrEMBL:A1K8J8,NCBI_GP:CAL95153.1;Name=CAL95153.1;Note=Hypothetical oxidoreductase yrbE (EC 1.-.-.-). TREMBL:Q93PS4:90%25 identity%3B 93%25 similarity. This group of enzymes utilise NADP or NAD%2C and is known as the GFO/IDH/MOCA family in Swiss-Prot. GFO is a glucose--fructose oxidoreductase%2C which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyze the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80%2C a negative regulator for the expression of lactose and galactose metabolic genes%3B and several hypothetical proteins from yeast%2C Escherichia coli and Bacillus subtilis. InterPro:IPR000683%3B GFO_IDH_MocA. IPR004104%3B GFO_IDH_MocA_C. Pfam: PF01408%3B GFO_IDH_MocA%3B 1. PF02894%3B GFO_IDH_MocA_C%3B presence of DUF206 Probably nonsecretory protein (SignalP predicted) Number of predicted TMHs: 0 (TMHMM predicted) InterPro: Oxidoreductase N-terminal ubiX: phenylacrylic acid decarboxylase 3%3B~High confidence in function and specificity;gbkey=CDS;gene=ligC;product=probable oxidoreductase;protein_id=CAL95153.1;transl_table=11
AM406670.1	EMBL	gene	2805209	2806063	.	-	.	ID=gene2585;Name=ligB2;gbkey=Gene;gene=ligB2;gene_biotype=protein_coding;locus_tag=azo2537
AM406670.1	EMBL	CDS	2805209	2806063	.	-	0	ID=cds2535;Parent=gene2585;Dbxref=EnsemblGenomes-Gn:azo2537,EnsemblGenomes-Tr:CAL95154,GOA:A1K8J9,InterPro:IPR004183,UniProtKB/TrEMBL:A1K8J9,NCBI_GP:CAL95154.1;Name=CAL95154.1;Note=Protocatechuate 4%2C5-dioxygenase beta chain subunit%2Chaving 91%25 similarity(85%25 identity)to TrEMBL%3BQ6N0Q9%2CProtocatechuate 3%2C4-dioxygenase beta chain [pcaH] [Xanthomonas axonopodis (pv. citri)]Swiss-Prot: P22636%3BPF02900%3BIPR004183 %3BCatalytic LigB subunit of aromatic ring-opening dioxygenase.The LigAB enzyme (a protocatechuate 4%2C5-dioxygenase EC: 1.13.11.8)%2C of Sphingomonas paucimobilis oxidizes protocatechuate (or 3%2C4-dihydroxybenzoic acid%2C PCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family%2Cwhich catalyzes the ring-opening reaction of protocatechuate and related compounds . Other members of this family include 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase (EC: 1.13.11.15) and 2%2C3-dihydroxyphenylpropionate 1%2C2-dioxygenase. No Signal peptide or TMH present%3B~High confidence in function and specificity;gbkey=CDS;gene=ligB2;product=protocatechuate 4%2C5-dioxygenase;protein_id=CAL95154.1;transl_table=11
AM406670.1	EMBL	gene	2806066	2806506	.	-	.	ID=gene2586;Name=ligA2;gbkey=Gene;gene=ligA2;gene_biotype=protein_coding;locus_tag=azo2538
AM406670.1	EMBL	CDS	2806066	2806506	.	-	0	ID=cds2536;Parent=gene2586;Dbxref=EnsemblGenomes-Gn:azo2538,EnsemblGenomes-Tr:CAL95155,GOA:A1K8K0,InterPro:IPR011986,InterPro:IPR014159,UniProtKB/TrEMBL:A1K8K0,NCBI_GP:CAL95155.1;Name=CAL95155.1;Note=[EC:1.13.11.8] %2C Protocatechuate 4%2C5-dioxygenase alpha chain (EC 1.13.11.8) (4%2C5-PCD).%2C Aromatic-ring-opening dioxygenase LigAB%2C LigA subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=ligA2;product=protocatechuate 4%2C5-dioxygenase%2C alpha chain;protein_id=CAL95155.1;transl_table=11
AM406670.1	EMBL	gene	2807012	2807926	.	-	.	ID=gene2587;Name=ligI;gbkey=Gene;gene=ligI;gene_biotype=protein_coding;locus_tag=azo2539
AM406670.1	EMBL	CDS	2807012	2807926	.	-	0	ID=cds2537;Parent=gene2587;Dbxref=EnsemblGenomes-Gn:azo2539,EnsemblGenomes-Tr:CAL95156,GOA:A1K8K1,InterPro:IPR006992,UniProtKB/TrEMBL:A1K8K1,NCBI_GP:CAL95156.1;Name=CAL95156.1;Note=Probable 2-pyrone-4%2C6-dicarboxylate hydrolase. Homology to ligI of S. paucimobilis of 55%25 (tremble:O87170) Pfam: Amidohydrolase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ligI;product=probable 2-pyrone-4%2C6-dicarboxylate hydrolase;protein_id=CAL95156.1;transl_table=11
AM406670.1	EMBL	gene	2807967	2808902	.	-	.	ID=gene2588;Name=mmsB;gbkey=Gene;gene=mmsB;gene_biotype=protein_coding;locus_tag=azo2540
AM406670.1	EMBL	CDS	2807967	2808902	.	-	0	ID=cds2538;Parent=gene2588;Dbxref=EnsemblGenomes-Gn:azo2540,EnsemblGenomes-Tr:CAL95157,GOA:A1K8K2,InterPro:IPR006115,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR015814,InterPro:IPR015815,InterPro:IPR016040,UniProtKB/TrEMBL:A1K8K2,NCBI_GP:CAL95157.1;Name=CAL95157.1;Note=Activity:- 3-hydroxy-2-methylpropanoate + NAD %3D 2-methyl-3-oxopropanoate + NADH2 Entry name SWISSPROT:MMSB_PSEAE InterPro IPR002204%3B 3hydroxisobut_dh. IPR006115%3B 6PGD_NAD. Pfam PF03446%3B NAD_binding_2%3B 1. Identities %3D 48/218 (22%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=mmsB;product=putative 3-hydroxyisobutyrate dehydrogenase;protein_id=CAL95157.1;transl_table=11
AM406670.1	EMBL	gene	2808905	2809594	.	-	.	ID=gene2589;Name=azo2541;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2541
AM406670.1	EMBL	CDS	2808905	2809594	.	-	0	ID=cds2539;Parent=gene2589;Dbxref=EnsemblGenomes-Gn:azo2541,EnsemblGenomes-Tr:CAL95158,GOA:A1K8K3,InterPro:IPR005493,InterPro:IPR014165,UniProtKB/TrEMBL:A1K8K3,NCBI_GP:CAL95158.1;Name=CAL95158.1;Note=Possible acyl transferase.%3B~Family membership;gbkey=CDS;product=acyl transferase%2C putative;protein_id=CAL95158.1;transl_table=11
AM406670.1	EMBL	gene	2809613	2810638	.	-	.	ID=gene2590;Name=fldW;gbkey=Gene;gene=fldW;gene_biotype=protein_coding;locus_tag=azo2542
AM406670.1	EMBL	CDS	2809613	2810638	.	-	0	ID=cds2540;Parent=gene2590;Dbxref=EnsemblGenomes-Gn:azo2542,EnsemblGenomes-Tr:CAL95159,GOA:A1K8K4,InterPro:IPR006992,UniProtKB/TrEMBL:A1K8K4,NCBI_GP:CAL95159.1;Name=CAL95159.1;Note=4-oxalomesaconate hydratase These proteins are related to the metal-dependent hydrolase superfamily tremblnew|CAE30137: 86%25 identity%2C 93%25 similarity InterPro:IPR006992%3B Amidohydro_2. Pfam:PF04909%3B Amidohydro_2 Absence of traansmembrane helices (TMHMM predicted)%3B~High confidence in function and specificity;gbkey=CDS;gene=fldW;product=probable 4-oxalomesaconate hydratase;protein_id=CAL95159.1;transl_table=11
AM406670.1	EMBL	gene	2810683	2812047	.	-	.	ID=gene2591;Name=pcaK;gbkey=Gene;gene=pcaK;gene_biotype=protein_coding;locus_tag=azo2543
AM406670.1	EMBL	CDS	2810683	2812047	.	-	0	ID=cds2541;Parent=gene2591;Dbxref=EnsemblGenomes-Gn:azo2543,EnsemblGenomes-Tr:CAL95160,GOA:A1K8K5,InterPro:IPR005829,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K8K5,NCBI_GP:CAL95160.1;Name=CAL95160.1;Note=PcaK:4-hydroxybenzoate transporter. TRANSPORTER FOR 4-HYDROXYBENZOATE ALSO REQUIRED FOR CHEMOTAXIS TO AROMATIC ACIDS. Membership of the major facilitator superfamily of transport proteins. 2A0115: benzoate transport%3B~High confidence in function and specificity;gbkey=CDS;gene=pcaK;product=putative 4-hydroxybenzoate transporter protein;protein_id=CAL95160.1;transl_table=11
AM406670.1	EMBL	gene	2812166	2813248	.	-	.	ID=gene2592;Name=fldA;gbkey=Gene;gene=fldA;gene_biotype=protein_coding;locus_tag=azo2544
AM406670.1	EMBL	CDS	2812166	2813248	.	-	0	ID=cds2542;Parent=gene2592;Dbxref=EnsemblGenomes-Gn:azo2544,EnsemblGenomes-Tr:CAL95161,InterPro:IPR007400,UniProtKB/TrEMBL:A1K8K6,NCBI_GP:CAL95161.1;Name=CAL95161.1;Note=Hypothetical protein FldA%2C 78%25 identity (86%25 similarity) to TrEMBL%3BQ6N0R5%2CQ8PF30(47%25 identity). 45%25 identity to ybhH of SwissProt%3BP75762(E.coli) Has PF04303%2CProtein of unknown function (DUF453)%3BIPR007400%3B FldA (Q9L3A0) is thought to be involved in the degradation of the polyaromatic hydrocarbon fluorene by Sphingomonas sp. LB126. Has PF01678%2C Diaminopimelate epimerase%3BIPR001653 DAP_epimerase: Diaminopimelate epimerase contains two domains of the same alpha/beta fold%2C both contained in this family.Diaminopimelate epimerase (EC:5.1.1.7) catalyzes the isomeriazation of L%2CL- to D%2CL-meso-diaminopimelate in the biosynthetic pathway leading from aspartate to lysine. This enzyme is a protein of about 30 kDa. No signal peptide or TMH present.%3B~Family membership;gbkey=CDS;gene=fldA;product=conserved hypothetical protein;protein_id=CAL95161.1;transl_table=11
AM406670.1	EMBL	gene	2813370	2814611	.	-	.	ID=gene2593;Name=bcr1;gbkey=Gene;gene=bcr1;gene_biotype=protein_coding;locus_tag=azo2545
AM406670.1	EMBL	CDS	2813370	2814611	.	-	0	ID=cds2543;Parent=gene2593;Dbxref=EnsemblGenomes-Gn:azo2545,EnsemblGenomes-Tr:CAL95162,GOA:A1K8K7,InterPro:IPR004812,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K8K7,NCBI_GP:CAL95162.1;Name=CAL95162.1;Note=Bicyclomycin resistance protein homolog. Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance. Probable membrane translocase (By similarity). InterPro: General substrate transporters efflux_Bcr_CflA: drug resistance tran Also show similarity to bssH of bssDCABEFGH operon-genes involved in anaerobic degradation of toulene in denitryfing bacterium%2C Azoarcus strain EbN1%3B~High confidence in function and specificity;gbkey=CDS;gene=bcr1;product=putative bicyclomycin resistance protein;protein_id=CAL95162.1;transl_table=11
AM406670.1	EMBL	gene	2814613	2815779	.	+	.	ID=gene2594;Name=nac;gbkey=Gene;gene=nac;gene_biotype=protein_coding;locus_tag=azo2546
AM406670.1	EMBL	CDS	2814613	2815779	.	+	0	ID=cds2544;Parent=gene2594;Dbxref=EnsemblGenomes-Gn:azo2546,EnsemblGenomes-Tr:CAL95163,GOA:A1K8K8,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K8K8,NCBI_GP:CAL95163.1;Name=CAL95163.1;Note=Nitrogen assimilation regulatory protein nac (Nitrogen assimilation control protein). TRANSCRIPTIONAL ACTIVATOR FOR THE HUT PUT AND URE OPERONS AND REPRESSOR FOR THE GDH AND GLTB OPERONS IN RESPONSE TO NITROGEN LIMITATION. NEGATIVE REGULATOR OF ITS OWN EXPRESSION. Similar to SWISSPROT: sprot|NAC_KLEAE (30%25 Klebsiella aerogenes%2C nitrogen assimilation regulatory protein nac (nitrogen assimilation control protein)) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2C lysR family. HTH reporting nucleic acid binding motif.%3B~Specificity unclear;gbkey=CDS;gene=nac;product=putative nitrogen assimilation regulatory protein;protein_id=CAL95163.1;transl_table=11
AM406670.1	EMBL	gene	2815984	2817636	.	+	.	ID=gene2595;Name=azo2547;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2547
AM406670.1	EMBL	CDS	2815984	2817636	.	+	0	ID=cds2545;Parent=gene2595;Dbxref=EnsemblGenomes-Gn:azo2547,EnsemblGenomes-Tr:CAL95164,GOA:A1K8K9,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR024478,UniProtKB/TrEMBL:A1K8K9,NCBI_GP:CAL95164.1;Name=CAL95164.1;Note=Probable methyl-accepting chemotaxis protein%2C%3B~Specificity unclear;gbkey=CDS;product=probable methyl-accepting chemotaxis protein;protein_id=CAL95164.1;transl_table=11
AM406670.1	EMBL	gene	2817706	2818587	.	-	.	ID=gene2596;Name=dyp;gbkey=Gene;gene=dyp;gene_biotype=protein_coding;locus_tag=azo2548
AM406670.1	EMBL	CDS	2817706	2818587	.	-	0	ID=cds2546;Parent=gene2596;Dbxref=EnsemblGenomes-Gn:azo2548,EnsemblGenomes-Tr:CAL95165,GOA:A1K8L0,InterPro:IPR006314,InterPro:IPR011008,UniProtKB/TrEMBL:A1K8L0,NCBI_GP:CAL95165.1;Name=CAL95165.1;Note=Getrichum candidum Dec1%2CDye-decolorizing peroxidase%2CDyP%2C that lacks a typical heme-binding region. Responsible for the decoloration of dyes. DyP degraded phenolic compounds%2C such as 2%2C6-dimethoxyphenol and guaiacol. Hypothetical protein yfeX. ccoO: cytochrome c oxidase cbb3-type su%3B~High confidence in function and specificity;gbkey=CDS;gene=dyp;product=putative iron-dependent peroxidase;protein_id=CAL95165.1;transl_table=11
AM406670.1	EMBL	gene	2818660	2819562	.	-	.	ID=gene2597;Name=cca2;gbkey=Gene;gene=cca2;gene_biotype=protein_coding;locus_tag=azo2549
AM406670.1	EMBL	CDS	2818660	2819562	.	-	0	ID=cds2547;Parent=gene2597;Dbxref=EnsemblGenomes-Gn:azo2549,EnsemblGenomes-Tr:CAL95166,GOA:A1K8L1,UniProtKB/TrEMBL:A1K8L1,NCBI_GP:CAL95166.1;Name=CAL95166.1;Note=tRNA nucleotidyltransferase (EC 2.7.7.25) (tRNA adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme). This enzyme carries out synthesis of the tRNA CCA terminus without the direction of a template using the multiple accepting and donating subsites within its active site.%3B~Family membership;gbkey=CDS;gene=cca2;product=tRNA nucleotidyltransferase;protein_id=CAL95166.1;transl_table=11
AM406670.1	EMBL	gene	2819724	2820674	.	+	.	ID=gene2598;Name=mdcF3;gbkey=Gene;gene=mdcF3;gene_biotype=protein_coding;locus_tag=azo2550
AM406670.1	EMBL	CDS	2819724	2820674	.	+	0	ID=cds2548;Parent=gene2598;Dbxref=EnsemblGenomes-Gn:azo2550,EnsemblGenomes-Tr:CAL95167,GOA:A1K8L2,InterPro:IPR004776,UniProtKB/TrEMBL:A1K8L2,NCBI_GP:CAL95167.1;Name=CAL95167.1;Note=Putative malonate transporter. TREMBL:Q8ZCU0: 38%25 identity%2C 55%25 similarity SPROT:P56949:23%25 identity%2C 41%25 similarity InterPro:IPR004776%3B Auxin_eff. Pfam:PF03547%3B Auxin_ef Signal P predicted nonsecretory protein and TMHMM predicted 9 transmembrane helices. 2a69: Auxin Efflux Carrier%3B~Specificity unclear;gbkey=CDS;gene=mdcF3;product=putative malonate transporter;protein_id=CAL95167.1;transl_table=11
AM406670.1	EMBL	gene	2821091	2821981	.	+	.	ID=gene2599;Name=azo2551;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2551
AM406670.1	EMBL	CDS	2821091	2821981	.	+	0	ID=cds2549;Parent=gene2599;Dbxref=EnsemblGenomes-Gn:azo2551,EnsemblGenomes-Tr:CAL95168,GOA:A1K8L3,InterPro:IPR000620,UniProtKB/TrEMBL:A1K8L3,NCBI_GP:CAL95168.1;Name=CAL95168.1;Note=Conserved hypothetical membrane protein. Homology with PA3897 of P. aeruginosa of 30%25. InterPro: Integral membrane protein DUF6. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transport. Pfam: Integral membrane protein DUF6. probable 10 TMHs. no signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95168.1;transl_table=11
AM406670.1	EMBL	gene	2822144	2823451	.	+	.	ID=gene2600;Name=pilU1;gbkey=Gene;gene=pilU1;gene_biotype=protein_coding;locus_tag=azo2552
AM406670.1	EMBL	CDS	2822144	2823451	.	+	0	ID=cds2550;Parent=gene2600;Dbxref=EnsemblGenomes-Gn:azo2552,EnsemblGenomes-Tr:CAL95169,GOA:A1K8L4,InterPro:IPR001482,InterPro:IPR006321,InterPro:IPR027417,UniProtKB/TrEMBL:A1K8L4,NCBI_GP:CAL95169.1;Name=CAL95169.1;Note=Tfp pilus retraction protein PilU%2C probable involved in the twitching motility mechanism%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=pilU1;product=twitching motility protein;protein_id=CAL95169.1;transl_table=11
AM406670.1	EMBL	gene	2823562	2824104	.	+	.	ID=gene2601;Name=azo2553;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2553
AM406670.1	EMBL	CDS	2823562	2824104	.	+	0	ID=cds2551;Parent=gene2601;Dbxref=EnsemblGenomes-Gn:azo2553,EnsemblGenomes-Tr:CAL95170,UniProtKB/TrEMBL:A1K8L5,NCBI_GP:CAL95170.1;Name=CAL95170.1;Note=Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. TMH in signal peptide;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95170.1;transl_table=11
AM406670.1	EMBL	gene	2824434	2825978	.	+	.	ID=gene2602;Name=nodT;gbkey=Gene;gene=nodT;gene_biotype=protein_coding;locus_tag=azo2554
AM406670.1	EMBL	CDS	2824434	2825978	.	+	0	ID=cds2552;Parent=gene2602;Dbxref=EnsemblGenomes-Gn:azo2554,EnsemblGenomes-Tr:CAL95171,GOA:A1K8L6,InterPro:IPR003423,UniProtKB/TrEMBL:A1K8L6,NCBI_GP:CAL95171.1;Name=CAL95171.1;Note=Putative outer membrane efflux protein. Homology to nodT from Rhizobium leguminosarum of 20%25 over 432 aa. The OEP family (Outer membrane efflux protein)allow export of a variety of substrates in Gram negative bacteria. Most members of NodT family are likely to export primarily small molecules rather than proteins. InterPro: Outer membrane efflux protein. Pfam: Outer membrane efflux protein Signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=nodT;product=putative outer membrane efflux protein;protein_id=CAL95171.1;transl_table=11
AM406670.1	EMBL	gene	2825984	2826748	.	+	.	ID=gene2603;Name=azo2555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2555
AM406670.1	EMBL	CDS	2825984	2826748	.	+	0	ID=cds2553;Parent=gene2603;Dbxref=EnsemblGenomes-Gn:azo2555,EnsemblGenomes-Tr:CAL95172,GOA:A1K8L7,InterPro:IPR006143,UniProtKB/TrEMBL:A1K8L7,NCBI_GP:CAL95172.1;Name=CAL95172.1;Note=Specificity unclear;gbkey=CDS;product=HlyD family secretion protein;protein_id=CAL95172.1;transl_table=11
AM406670.1	EMBL	gene	2826820	2832576	.	+	.	ID=gene2604;Name=azo2556;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2556
AM406670.1	EMBL	CDS	2826820	2832576	.	+	0	ID=cds2554;Parent=gene2604;Dbxref=EnsemblGenomes-Gn:azo2556,EnsemblGenomes-Tr:CAL95173,GOA:A1K8L8,InterPro:IPR002126,InterPro:IPR006644,InterPro:IPR010221,InterPro:IPR013783,InterPro:IPR015919,UniProtKB/TrEMBL:A1K8L8,NCBI_GP:CAL95173.1;Name=CAL95173.1;Note=No Good Homology with any hits in the DB. Conserved Hypothetical Protein%2C34%25 similarity to TrEMBL%3BQ8E9W3. Has PF03160:IPR003644:Calx_beta%3BNa-Ca exchanger/integrin-beta4:This domain has been found in Na-Ca exchangers and integrin subunit beta4%2C as well as some cyanobacterial proteins. Has 3 CA(Cadherin repeats)domains%3BSMART:SM00112%3BIPR002126:Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Has 1 CADG%2CDystroglycan-type cadherin-like domains(SMART%3BSM00736).Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans%2Cyeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.%3B~Family membership;gbkey=CDS;product=hypothetical protein;protein_id=CAL95173.1;transl_table=11
AM406670.1	EMBL	gene	2832576	2833937	.	+	.	ID=gene2605;Name=azo2557;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2557
AM406670.1	EMBL	CDS	2832576	2833937	.	+	0	ID=cds2555;Parent=gene2605;Dbxref=EnsemblGenomes-Gn:azo2557,EnsemblGenomes-Tr:CAL95174,UniProtKB/TrEMBL:A1K8L9,NCBI_GP:CAL95174.1;Name=CAL95174.1;Note=Similar to MacA.%3B~Family membership;gbkey=CDS;product=HlyD family secretion protein;protein_id=CAL95174.1;transl_table=11
AM406670.1	EMBL	gene	2833940	2836051	.	+	.	ID=gene2606;Name=azo2558;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2558
AM406670.1	EMBL	CDS	2833940	2836051	.	+	0	ID=cds2556;Parent=gene2606;Dbxref=EnsemblGenomes-Gn:azo2558,EnsemblGenomes-Tr:CAL95175,GOA:A1K8M0,InterPro:IPR001193,InterPro:IPR008915,UniProtKB/TrEMBL:A1K8M0,NCBI_GP:CAL95175.1;Name=CAL95175.1;Note=Family membership;gbkey=CDS;product=membrane protein with HlyD domain;protein_id=CAL95175.1;transl_table=11
AM406670.1	EMBL	gene	2836162	2836581	.	+	.	ID=gene2607;Name=azo2559;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2559
AM406670.1	EMBL	CDS	2836162	2836581	.	+	0	ID=cds2557;Parent=gene2607;Dbxref=EnsemblGenomes-Gn:azo2559,EnsemblGenomes-Tr:CAL95176,UniProtKB/TrEMBL:A1K8M1,NCBI_GP:CAL95176.1;Name=CAL95176.1;Note=Conserved hypothetical secreted protein. Homology to Mflag03001539 of Methylobacillus flagellatus of 38%25 (gi|45521149|ref|ZP_00172671.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95176.1;transl_table=11
AM406670.1	EMBL	gene	2836767	2837564	.	+	.	ID=gene2608;Name=azo2560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2560
AM406670.1	EMBL	CDS	2836767	2837564	.	+	0	ID=cds2558;Parent=gene2608;Dbxref=EnsemblGenomes-Gn:azo2560,EnsemblGenomes-Tr:CAL95177,InterPro:IPR016545,InterPro:IPR029055,UniProtKB/TrEMBL:A1K8M2,NCBI_GP:CAL95177.1;Name=CAL95177.1;Note=Conserved hypothetical protein. Homology to rsc1124 of R. solanacearum of 59%25 (trembl|Q8Y0C0). no signal peptide. no TMHs. no domains reported.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95177.1;transl_table=11
AM406670.1	EMBL	gene	2837663	2839060	.	-	.	ID=gene2609;Name=azo2561;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2561
AM406670.1	EMBL	CDS	2837663	2839060	.	-	0	ID=cds2559;Parent=gene2609;Dbxref=EnsemblGenomes-Gn:azo2561,EnsemblGenomes-Tr:CAL95178,InterPro:IPR007055,UniProtKB/TrEMBL:A1K8M3,NCBI_GP:CAL95178.1;Name=CAL95178.1;Note=Conserved hypothetical protein. Homology to dr0392 of D. radiodurans of 33%25 (trembl|Q9RXC3). Pfam: Collagen triple helix repeat (20 copies). Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. Smart: Bacterial OsmY and nodulation domain (BON). The BON domain is typically ~~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins%2C typically of the OsmY-type proteins. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95178.1;transl_table=11
AM406670.1	EMBL	gene	2839343	2840350	.	+	.	ID=gene2610;Name=ccp;gbkey=Gene;gene=ccp;gene_biotype=protein_coding;locus_tag=azo2562
AM406670.1	EMBL	CDS	2839343	2840350	.	+	0	ID=cds2560;Parent=gene2610;Dbxref=EnsemblGenomes-Gn:azo2562,EnsemblGenomes-Tr:CAL95179,GOA:A1K8M4,InterPro:IPR003088,InterPro:IPR004852,InterPro:IPR009056,InterPro:IPR026259,UniProtKB/TrEMBL:A1K8M4,NCBI_GP:CAL95179.1;Name=CAL95179.1;Note=Cytochrome c peroxidase (EC 1.11.1.5)%2C an electron-transfer proteins having one or several haem c groups%2Cbound to the protein by one or%2C more generally%2C two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Signal peptide.%3B~High confidence in function and specificity;gbkey=CDS;gene=ccp;product=putative cytochrome c peroxidase;protein_id=CAL95179.1;transl_table=11
AM406670.1	EMBL	gene	2840530	2840916	.	+	.	ID=gene2611;Name=azo2563;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2563
AM406670.1	EMBL	CDS	2840530	2840916	.	+	0	ID=cds2561;Parent=gene2611;Dbxref=EnsemblGenomes-Gn:azo2563,EnsemblGenomes-Tr:CAL95180,InterPro:IPR005297,InterPro:IPR014558,UniProtKB/TrEMBL:A1K8M5,NCBI_GP:CAL95180.1;Name=CAL95180.1;Note=Conserved hypothetical secreted secreted protein. Homology to bb1301 of B. bronchiseptica of 59%25 (trembl|Q7WMT9). Pfam: Lipoprotein_15. This family occurs as tandem repeats in a set of lipoproteins. The alignment contains a Y-X4-D motif. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95180.1;transl_table=11
AM406670.1	EMBL	gene	2840924	2841424	.	+	.	ID=gene2612;Name=azo2564;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2564
AM406670.1	EMBL	CDS	2840924	2841424	.	+	0	ID=cds2562;Parent=gene2612;Dbxref=EnsemblGenomes-Gn:azo2564,EnsemblGenomes-Tr:CAL95181,GOA:A1K8M6,InterPro:IPR007627,InterPro:IPR011991,InterPro:IPR013249,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:A1K8M6,NCBI_GP:CAL95181.1;Name=CAL95181.1;Note=Putative RNA polymerase sigma factor%2C57%25 Identity to TrEMBL%3BQ7VV01%2C 49%25 Identity to TrEMBL%3BQ8XV48%2C53%25 to Q63LJ3. Has PF04542%2C Sigma-70 region 2%3B IPR007627%2CSigma70_r2%3B Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix%2C interacts with the clamp domain of the largest polymerase subunit%2Cbeta prime. The aromatic residues of the recognition helix%2C found at the C-terminus of this domain are though to mediate strand separation%2C thereby allowing transcription initiation. Has PF04545%2C Sigma-70%2C region 4%3BIPR007630%2C Sigma70_r4%3B Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works%2C the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.;gbkey=CDS;product=putative RNA polymerase sigma factor;protein_id=CAL95181.1;transl_table=11
AM406670.1	EMBL	gene	2841421	2842239	.	+	.	ID=gene2613;Name=azo2565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2565
AM406670.1	EMBL	CDS	2841421	2842239	.	+	0	ID=cds2563;Parent=gene2613;Dbxref=EnsemblGenomes-Gn:azo2565,EnsemblGenomes-Tr:CAL95182,UniProtKB/TrEMBL:A1K8M7,NCBI_GP:CAL95182.1;Name=CAL95182.1;Note=Conserved hypothetical membrane protein. Homology to BB1303 of Bordetella bronchiseptica of 50%25 (trembl|Q7WMT7). No domains predicted. TMHMM2 reporting 1 TMH present. No signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95182.1;transl_table=11
AM406670.1	EMBL	gene	2842255	2843214	.	-	.	ID=gene2614;Name=azo2566;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2566
AM406670.1	EMBL	CDS	2842255	2843214	.	-	0	ID=cds2564;Parent=gene2614;Dbxref=EnsemblGenomes-Gn:azo2566,EnsemblGenomes-Tr:CAL95183,GOA:A1K8M8,InterPro:IPR000157,UniProtKB/TrEMBL:A1K8M8,NCBI_GP:CAL95183.1;Name=CAL95183.1;Note=Hypothetical protein%2C53%25 identity to TrEMBL:Q8YF53%2CHypothetical protein BMEI1674 [BMEI1674] [Brucella melitensis] Has IPR000157:TIR domain.%3B~Family membership%3B~ORF6;gbkey=CDS;product=hypothetical protein;protein_id=CAL95183.1;transl_table=11
AM406670.1	EMBL	gene	2843306	2844313	.	-	.	ID=gene2615;Name=azo2567;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2567
AM406670.1	EMBL	CDS	2843306	2844313	.	-	0	ID=cds2565;Parent=gene2615;Dbxref=EnsemblGenomes-Gn:azo2567,EnsemblGenomes-Tr:CAL95184,GOA:A1K8M9,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K8M9,NCBI_GP:CAL95184.1;Name=CAL95184.1;Note=Putative LysR-family transcriptional regulator protein.62%25 identity to TrEMBL%3BQ63NK9%2CQ8XQV8%2CQ62B59%2CQ8VL17. PF00126%2C Bacterial regulatory helix-turn-helix protein%2C lysR family%3BIPR000847%2C HTH_LysR%3B Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse%2Cbut for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family%2C the lysR family%2C groups together a range of proteins%2C including ampR%2C catM%2C catR%2C cynR%2C cysB%2C gltC%2C iciA%2C ilvY%2C irgB%2ClysR%2C metR%2C mkaC%2C mleR%2C nahR%2C nhaR%2C nodD%2C nolR%2C oxyR%2CpssR%2C rbcR%2C syrM%2C tcbR%2C tfdS and trpI. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini. Has PF03466%2C LysR substrate binding domain%3B IPR005119%2C LysR_subst%3B The structure of this domain is known and is;gbkey=CDS;product=putative LysR-family transcriptional regulator protein.;protein_id=CAL95184.1;transl_table=11
AM406670.1	EMBL	gene	2844563	2845765	.	+	.	ID=gene2616;Name=azo2568;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2568
AM406670.1	EMBL	CDS	2844563	2845765	.	+	0	ID=cds2566;Parent=gene2616;Dbxref=EnsemblGenomes-Gn:azo2568,EnsemblGenomes-Tr:CAL95185,GOA:A1K8N0,InterPro:IPR006143,UniProtKB/TrEMBL:A1K8N0,NCBI_GP:CAL95185.1;Name=CAL95185.1;Note=HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C%3B~Family membership;gbkey=CDS;product=membrane fusion protein;protein_id=CAL95185.1;transl_table=11
AM406670.1	EMBL	gene	2845776	2848967	.	+	.	ID=gene2617;Name=azo2569;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2569
AM406670.1	EMBL	CDS	2845776	2848967	.	+	0	ID=cds2567;Parent=gene2617;Dbxref=EnsemblGenomes-Gn:azo2569,EnsemblGenomes-Tr:CAL95186,GOA:A1K8N1,InterPro:IPR000731,InterPro:IPR001036,InterPro:IPR004764,InterPro:IPR027463,UniProtKB/TrEMBL:A1K8N1,NCBI_GP:CAL95186.1;Name=CAL95186.1;Note=AcrB/AcrD/AcrF family protein. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q92U15 (38%25 identity)%3B TREMBL:Q7NE92 (38%25 identity). InterPro (IPR000731): Sterol-sensing 5TM box. InterPro (IPR004764): Hydrophobe/amphiphile efflux-1 HAE1. InterPro (IPR001036): Acriflavin resistance protein. Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TMHMM predicting 12 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear;gbkey=CDS;product=RND efflux transporter%2C permease protein;protein_id=CAL95186.1;transl_table=11
AM406670.1	EMBL	gene	2848984	2850510	.	+	.	ID=gene2618;Name=opcM2;gbkey=Gene;gene=opcM2;gene_biotype=protein_coding;locus_tag=azo2570
AM406670.1	EMBL	CDS	2848984	2850510	.	+	0	ID=cds2568;Parent=gene2618;Dbxref=EnsemblGenomes-Gn:azo2570,EnsemblGenomes-Tr:CAL95187,GOA:A1K8N2,InterPro:IPR003423,InterPro:IPR010131,UniProtKB/TrEMBL:A1K8N2,NCBI_GP:CAL95187.1;Name=CAL95187.1;Note=Probable outer membrane efflux protein. Homology to opcM from B. cepacia of 40%25 Component of an efflux system that confers mutiple antibiotic resistence. InterPro: Outer membrane efflux protein Pfam: Outer membrane efflux protein signal peptide no TMHS%3B~Family membership;gbkey=CDS;gene=opcM2;product=probable outer membrane efflux protein;protein_id=CAL95187.1;transl_table=11
AM406670.1	EMBL	gene	2850539	2851069	.	-	.	ID=gene2619;Name=azo2571;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2571
AM406670.1	EMBL	CDS	2850539	2851069	.	-	0	ID=cds2569;Parent=gene2619;Dbxref=EnsemblGenomes-Gn:azo2571,EnsemblGenomes-Tr:CAL95188,InterPro:IPR021295,UniProtKB/TrEMBL:A1K8N3,NCBI_GP:CAL95188.1;Name=CAL95188.1;Note=Conserved hypothetical protein. Homology to VV1824 of V.vulnificus of 37%25 (trembl:Q7MKG9). No domains predicted. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95188.1;transl_table=11
AM406670.1	EMBL	gene	2851066	2851710	.	-	.	ID=gene2620;Name=azo2572;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2572
AM406670.1	EMBL	CDS	2851066	2851710	.	-	0	ID=cds2570;Parent=gene2620;Dbxref=EnsemblGenomes-Gn:azo2572,EnsemblGenomes-Tr:CAL95189,UniProtKB/TrEMBL:A1K8N4,NCBI_GP:CAL95189.1;Name=CAL95189.1;Note=Hypothetical membrane protein. no homology to the data bank. no domains predicted. no signal peptide. 1 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95189.1;transl_table=11
AM406670.1	EMBL	gene	2851794	2853032	.	-	.	ID=gene2621;Name=fsr;gbkey=Gene;gene=fsr;gene_biotype=protein_coding;locus_tag=azo2573
AM406670.1	EMBL	CDS	2851794	2853032	.	-	0	ID=cds2571;Parent=gene2621;Dbxref=EnsemblGenomes-Gn:azo2573,EnsemblGenomes-Tr:CAL95190,GOA:A1K8N5,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K8N5,NCBI_GP:CAL95190.1;Name=CAL95190.1;Note=A gene conferring resistance to fosmidomycin (Fs) encode a putative polypeptide of 406 amino acids (aa) with a molecular weight of 43303 in E.coli. 23%25 similarity to B. japonicum fsr. A comparison between the aa sequence of Fsr and sequences in a protein database revealed 18%25 homology to the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. Hydropathy analysis of the Fsr protein revealed twelve putative transmembrane segments. Fsr does not have any direct effect on the biosynthesis of isoprenoid in E. coli%2C and that the mechanism for FsR involves the efflux of the drug by a process that is facilitated by Fsr. (Ref: Fujisaki%2CS. et al.%2C 1996)%3B~High confidence in function and specificity;gbkey=CDS;gene=fsr;product=putative fosmidomycin resistance protein;protein_id=CAL95190.1;transl_table=11
AM406670.1	EMBL	gene	2853125	2853910	.	+	.	ID=gene2622;Name=azo2574;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2574
AM406670.1	EMBL	CDS	2853125	2853910	.	+	0	ID=cds2572;Parent=gene2622;Dbxref=EnsemblGenomes-Gn:azo2574,EnsemblGenomes-Tr:CAL95191,GOA:A1K8N6,InterPro:IPR009057,InterPro:IPR011051,InterPro:IPR013096,InterPro:IPR014710,InterPro:IPR018060,InterPro:IPR020449,UniProtKB/TrEMBL:A1K8N6,NCBI_GP:CAL95191.1;Name=CAL95191.1;Note=Putative AraC-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative AraC-family transcriptional regulator;protein_id=CAL95191.1;transl_table=11
AM406670.1	EMBL	gene	2853962	2856457	.	-	.	ID=gene2623;Name=gacS;gbkey=Gene;gene=gacS;gene_biotype=protein_coding;locus_tag=azo2575
AM406670.1	EMBL	CDS	2853962	2856457	.	-	0	ID=cds2573;Parent=gene2623;Dbxref=EnsemblGenomes-Gn:azo2575,EnsemblGenomes-Tr:CAL95192,GOA:A1K8N7,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR013655,UniProtKB/TrEMBL:A1K8N7,NCBI_GP:CAL95192.1;Name=CAL95192.1;Note=Putative two-component hybrid sensor and regulator%2C%3B~Family membership;gbkey=CDS;gene=gacS;product=putative two-component hybrid sensor and regulator;protein_id=CAL95192.1;transl_table=11
AM406670.1	EMBL	gene	2856467	2857276	.	-	.	ID=gene2624;Name=dapB;gbkey=Gene;gene=dapB;gene_biotype=protein_coding;locus_tag=azo2576
AM406670.1	EMBL	CDS	2856467	2857276	.	-	0	ID=cds2574;Parent=gene2624;Dbxref=EnsemblGenomes-Gn:azo2576,EnsemblGenomes-Tr:CAL95193,GOA:A1K8N8,InterPro:IPR000846,InterPro:IPR011770,InterPro:IPR016040,InterPro:IPR022663,InterPro:IPR022664,InterPro:IPR023940,UniProtKB/TrEMBL:A1K8N8,NCBI_GP:CAL95193.1;Name=CAL95193.1;Note=Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine%2C the NAD or NADP-dependent reduction of 2%2C3-dihydrodipicolinate into 2%2C3%2C4%2C5-tetrahydrodipicolinate. Similar to sprot|DAPB_PSESM (57%25)%2C to sprot|DAPB_RALSO (58%25) and to sprot|DAPB_ECOLI (54%25). TIGRfam (TIGR00036): Dihydrodipicolinate reductase Pfam (PF01113): Dihydrodipicolinate reductase%3B~High confidence in function and specificity;gbkey=CDS;gene=dapB;product=DapB protein;protein_id=CAL95193.1;transl_table=11
AM406670.1	EMBL	gene	2857314	2857823	.	-	.	ID=gene2625;Name=omlA;gbkey=Gene;gene=omlA;gene_biotype=protein_coding;locus_tag=azo2577
AM406670.1	EMBL	CDS	2857314	2857823	.	-	0	ID=cds2575;Parent=gene2625;Dbxref=EnsemblGenomes-Gn:azo2577,EnsemblGenomes-Tr:CAL95194,GOA:A1K8N9,InterPro:IPR007450,InterPro:IPR026592,UniProtKB/TrEMBL:A1K8N9,NCBI_GP:CAL95194.1;Name=CAL95194.1;Note=Putative outer membrane lipoprotein OmlA precursor. Homology to omlA of P. aeruginosa of 33%25 (sprot|OMLA_PSEAE) MAY HAVE A STRUCTURAL ROLE IN MAINTAINING THE CELL ENVELOPE INTEGRITY. Pfam: SmpA/OmlA family no signal protein 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;gene=omlA;product=putative outer membrane lipoprotein OmlA;protein_id=CAL95194.1;transl_table=11
AM406670.1	EMBL	gene	2857844	2858281	.	+	.	ID=gene2626;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=azo2578
AM406670.1	EMBL	CDS	2857844	2858281	.	+	0	ID=cds2576;Parent=gene2626;Dbxref=EnsemblGenomes-Gn:azo2578,EnsemblGenomes-Tr:CAL95195,GOA:A1K8P0,InterPro:IPR002481,InterPro:IPR011991,UniProtKB/TrEMBL:A1K8P0,NCBI_GP:CAL95195.1;Name=CAL95195.1;Note=Ferric uptake regulation protein (Ferric uptake regulator)Fur. Acts as a global negative controlling element employing Fe(2+) as a cofactor to bind the operator of the repressed genes. Regulator for biosynthesis of the siderophore alcaligin E. InterPro: Ferric uptake regulator family TIGR00011: conserved hypothetical protein%3B~High confidence in function and specificity;gbkey=CDS;gene=fur;product=putative ferric uptake regulation protein;protein_id=CAL95195.1;transl_table=11
AM406670.1	EMBL	gene	2858307	2859974	.	-	.	ID=gene2627;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;locus_tag=azo2579
AM406670.1	EMBL	CDS	2858307	2859974	.	-	0	ID=cds2577;Parent=gene2627;Dbxref=EnsemblGenomes-Gn:azo2579,EnsemblGenomes-Tr:CAL95196,GOA:A1K8P1,InterPro:IPR003395,InterPro:IPR004604,InterPro:IPR027417,UniProtKB/TrEMBL:A1K8P1,NCBI_GP:CAL95196.1;Name=CAL95196.1;Note=DNA repair protein recN (Recombination protein N). MAY BE INVOLVED IN RECOMBINATIONAL REPAIR OF DAMAGED DNA. recN: DNA repair protein RecN%3B~High confidence in function and specificity;gbkey=CDS;gene=recN;product=DNA repair protein;protein_id=CAL95196.1;transl_table=11
AM406670.1	EMBL	gene	2860012	2860896	.	-	.	ID=gene2628;Name=ppnK;gbkey=Gene;gene=ppnK;gene_biotype=protein_coding;locus_tag=azo2580
AM406670.1	EMBL	CDS	2860012	2860896	.	-	0	ID=cds2578;Parent=gene2628;Dbxref=EnsemblGenomes-Gn:azo2580,EnsemblGenomes-Tr:CAL95197,GOA:A1K8P2,InterPro:IPR002504,InterPro:IPR016064,InterPro:IPR017437,InterPro:IPR017438,NCBI_GP:CAL95197.1;Name=CAL95197.1;Note=Probable inorganic polyphosphate/ATP-NAD kinase(Poly(P)/ATP NAD kinase). Catalyzes the phosphorylation of NAD to NADP. Utilizes ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus. 34%25 ATP_NADK.InterPro: Domain of unknown function DUF15 Pfam:PF01513%3B NAD_kinase%3B 1. TIGR:VC0853.%3B~High confidence in function and specificity;gbkey=CDS;gene=ppnK;product=probable inorganic polyphosphate/ATP-NAD kinase;protein_id=CAL95197.1;transl_table=11
AM406670.1	EMBL	gene	2861000	2862028	.	+	.	ID=gene2629;Name=hrcA;gbkey=Gene;gene=hrcA;gene_biotype=protein_coding;locus_tag=azo2581
AM406670.1	EMBL	CDS	2861000	2862028	.	+	0	ID=cds2579;Parent=gene2629;Dbxref=EnsemblGenomes-Gn:azo2581,EnsemblGenomes-Tr:CAL95198,GOA:A1K8P3,InterPro:IPR002571,InterPro:IPR011991,InterPro:IPR021153,InterPro:IPR029016,UniProtKB/TrEMBL:A1K8P3,NCBI_GP:CAL95198.1;Name=CAL95198.1;Note=Heat-inducible transcription repressor HrcA. Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons. Similar to SWISSPROT: sprot|HRCA_RALSO (62%25 Ralstonia solanacearum (Pseudomonas solanacearum)%2C heat-inducible transcription repressor HrcA) / sprot|HRCA_XANCP (46%25 Xanthomonas campestris (pv. campestris)%2C heat-inducible transcription repressor HrcA) InterPro: IPR002571 Negative regulator of class I heat shock protein. Pfam: PF01628 HrcA protein C terminal domain. TIGRFAM: TIGR00331 heat-inducible transcription repressor HrcA.%3B~High confidence in function and specificity;gbkey=CDS;gene=hrcA;product=heat-inducible transcriptional repressor;protein_id=CAL95198.1;transl_table=11
AM406670.1	EMBL	gene	2862075	2863166	.	+	.	ID=gene2630;Name=hemH;gbkey=Gene;gene=hemH;gene_biotype=protein_coding;locus_tag=azo2582
AM406670.1	EMBL	CDS	2862075	2863166	.	+	0	ID=cds2580;Parent=gene2630;Dbxref=EnsemblGenomes-Gn:azo2582,EnsemblGenomes-Tr:CAL95199,GOA:A1K8P4,InterPro:IPR001015,InterPro:IPR019772,NCBI_GP:CAL95199.1;Name=CAL95199.1;Note=Protoheme ferro-lyase (Heme synthetase). Catalyzes the ferrous insertion into protoporphyrin IX. TIGRFAM: hemH: ferrochelatase%3B~High confidence in function and specificity;gbkey=CDS;gene=hemH;product=Ferrochelatase;protein_id=CAL95199.1;transl_table=11
AM406670.1	EMBL	gene	2863166	2863522	.	+	.	ID=gene2631;Name=azo2583;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2583
AM406670.1	EMBL	CDS	2863166	2863522	.	+	0	ID=cds2581;Parent=gene2631;Dbxref=EnsemblGenomes-Gn:azo2583,EnsemblGenomes-Tr:CAL95200,InterPro:IPR007165,UniProtKB/TrEMBL:A1K8P5,NCBI_GP:CAL95200.1;Name=CAL95200.1;Note=Conserved hypothetical membrane protein. Homology to rs02279 of R. solanacearum of 53%25 (trembl|Q8Y388(SRS)). No domains predicted. No signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95200.1;transl_table=11
AM406670.1	EMBL	gene	2863580	2864590	.	+	.	ID=gene2632;Name=azo2584;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2584
AM406670.1	EMBL	CDS	2863580	2864590	.	+	0	ID=cds2582;Parent=gene2632;Dbxref=EnsemblGenomes-Gn:azo2584,EnsemblGenomes-Tr:CAL95201,UniProtKB/TrEMBL:A1K8P6,NCBI_GP:CAL95201.1;Name=CAL95201.1;Note=Similar to TREMBL:Q7NTT5 (32%25 identity).;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95201.1;transl_table=11
AM406670.1	EMBL	gene	2864625	2865989	.	-	.	ID=gene2633;Name=yloP;gbkey=Gene;gene=yloP;gene_biotype=protein_coding;locus_tag=azo2585
AM406670.1	EMBL	CDS	2864625	2865989	.	-	0	ID=cds2583;Parent=gene2633;Dbxref=EnsemblGenomes-Gn:azo2585,EnsemblGenomes-Tr:CAL95202,GOA:A1K8P7,InterPro:IPR000595,InterPro:IPR000719,InterPro:IPR008271,InterPro:IPR011009,InterPro:IPR014710,InterPro:IPR017441,InterPro:IPR018490,UniProtKB/TrEMBL:A1K8P7,NCBI_GP:CAL95202.1;Name=CAL95202.1;Note=Putative serine/threonine kinase%2C%3B~Family membership;gbkey=CDS;gene=yloP;product=putative protein kinase;protein_id=CAL95202.1;transl_table=11
AM406670.1	EMBL	gene	2866089	2866193	.	+	.	ID=gene2634;Name=azo2586;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2586
AM406670.1	EMBL	CDS	2866089	2866193	.	+	0	ID=cds2584;Parent=gene2634;Dbxref=EnsemblGenomes-Gn:azo2586,EnsemblGenomes-Tr:CAL95203,UniProtKB/TrEMBL:A1K8P8,NCBI_GP:CAL95203.1;Name=CAL95203.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95203.1;transl_table=11
AM406670.1	EMBL	gene	2866190	2867509	.	+	.	ID=gene2635;Name=azo2587;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2587
AM406670.1	EMBL	CDS	2866190	2867509	.	+	0	ID=cds2585;Parent=gene2635;Dbxref=EnsemblGenomes-Gn:azo2587,EnsemblGenomes-Tr:CAL95204,GOA:A1K8P9,InterPro:IPR006680,InterPro:IPR011059,InterPro:IPR023512,UniProtKB/TrEMBL:A1K8P9,NCBI_GP:CAL95204.1;Name=CAL95204.1;Note=probable atrazine chlorohydrolase [EC:3.8.1.8] InterPro: Chlorohydrolase trembl:Q7NZ90%3B pir:B83249;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95204.1;transl_table=11
AM406670.1	EMBL	gene	2867629	2868345	.	+	.	ID=gene2636;Name=ompA1;gbkey=Gene;gene=ompA1;gene_biotype=protein_coding;locus_tag=azo2588
AM406670.1	EMBL	CDS	2867629	2868345	.	+	0	ID=cds2586;Parent=gene2636;Dbxref=EnsemblGenomes-Gn:azo2588,EnsemblGenomes-Tr:CAL95205,GOA:A1K8Q0,InterPro:IPR002368,InterPro:IPR006664,InterPro:IPR006665,InterPro:IPR006690,UniProtKB/TrEMBL:A1K8Q0,NCBI_GP:CAL95205.1;Name=CAL95205.1;Note=Outer membrane protein P.III precursor (Gonococcal protein III) (PIII). InterPro: Bacterial outer membrane protein%3B~High confidence in function and specificity;gbkey=CDS;gene=ompA1;product=outer membrane protein A precursor;protein_id=CAL95205.1;transl_table=11
AM406670.1	EMBL	gene	2868451	2869152	.	+	.	ID=gene2637;Name=ubiG;gbkey=Gene;gene=ubiG;gene_biotype=protein_coding;locus_tag=azo2589
AM406670.1	EMBL	CDS	2868451	2869152	.	+	0	ID=cds2587;Parent=gene2637;Dbxref=EnsemblGenomes-Gn:azo2589,EnsemblGenomes-Tr:CAL95206,GOA:A1K8Q1,InterPro:IPR010233,InterPro:IPR029063,NCBI_GP:CAL95206.1;Name=CAL95206.1;Note=3%2C4- dihydroxy-5-hexaprenylbenzoate methyltransferase (DHHB methyltransferase). Belongs to the ubiquinone biosynthesis pathway%2C by similarity. InterPro: SAM (and some other nucleotide) binding motif%3B~High confidence in function and specificity;gbkey=CDS;gene=ubiG;product=3-demethylubiquinone-9 3-O-methyltransferase;protein_id=CAL95206.1;transl_table=11
AM406670.1	EMBL	gene	2869372	2869448	.	-	.	ID=gene2638;Name=tRNA-Met;gbkey=Gene;gene=tRNA-Met;gene_biotype=tRNA;locus_tag=azo_tRNA_0045
AM406670.1	EMBL	tRNA	2869372	2869448	.	-	.	ID=rna50;Parent=gene2638;anticodon=(pos:complement(2869412..2869414));gbkey=tRNA;gene=tRNA-Met;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Met
AM406670.1	EMBL	exon	2869372	2869448	.	-	.	ID=id51;Parent=rna50;anticodon=(pos:complement(2869412..2869414));gbkey=tRNA;gene=tRNA-Met;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Met
AM406670.1	EMBL	gene	2869577	2870845	.	-	.	ID=gene2639;Name=azo2590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2590
AM406670.1	EMBL	CDS	2869577	2870845	.	-	0	ID=cds2588;Parent=gene2639;Dbxref=EnsemblGenomes-Gn:azo2590,EnsemblGenomes-Tr:CAL95207,InterPro:IPR007345,UniProtKB/TrEMBL:A1K8Q2,NCBI_GP:CAL95207.1;Name=CAL95207.1;Note=Conserved hypothetical protein. Homology to ebA5327 of Azoarcus sp. EbN1 of 44%25 (gnl|keqq|eba:ebA5327(KEGG)). Pfam: Polysaccharide pyruvyl transferase Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95207.1;transl_table=11
AM406670.1	EMBL	gene	2871202	2873805	.	+	.	ID=gene2640;Name=azo2591;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2591
AM406670.1	EMBL	CDS	2871202	2873805	.	+	0	ID=cds2589;Parent=gene2640;Dbxref=EnsemblGenomes-Gn:azo2591,EnsemblGenomes-Tr:CAL95208,GOA:A1K8Q3,InterPro:IPR009056,UniProtKB/TrEMBL:A1K8Q3,NCBI_GP:CAL95208.1;Name=CAL95208.1;Note=Conserved hypothetical secreted protein. Homology to Daro03002418 of Dechloromonas aromatica of 58%25 (gi|53730135|ref|ZP_00150721.2|(NBCI ENTREZ)). No domains predicted. No TMHs. signal peptide present.;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95208.1;transl_table=11
AM406670.1	EMBL	gene	2873818	2874735	.	+	.	ID=gene2641;Name=azo2592;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2592
AM406670.1	EMBL	CDS	2873818	2874735	.	+	0	ID=cds2590;Parent=gene2641;Dbxref=EnsemblGenomes-Gn:azo2592,EnsemblGenomes-Tr:CAL95209,UniProtKB/TrEMBL:A1K8Q4,NCBI_GP:CAL95209.1;Name=CAL95209.1;Note=Conserved hypothetical protein. Homology to Daro03002419 of Dechloromonas aromatica of 51%25 (gi|41723832|ref|ZP_00150722.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95209.1;transl_table=11
AM406670.1	EMBL	gene	2874754	2876877	.	+	.	ID=gene2642;Name=azo2593;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2593
AM406670.1	EMBL	CDS	2874754	2876877	.	+	0	ID=cds2591;Parent=gene2642;Dbxref=EnsemblGenomes-Gn:azo2593,EnsemblGenomes-Tr:CAL95210,UniProtKB/TrEMBL:A1K8Q5,NCBI_GP:CAL95210.1;Name=CAL95210.1;Note=conserved hypothetical secreted protein. Homology to Daro03002420 of Dechloromonas aromatica of 39%25 (gi|41723833|ref|ZP_00150723.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95210.1;transl_table=11
AM406670.1	EMBL	gene	2876874	2878430	.	+	.	ID=gene2643;Name=azo2594;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2594
AM406670.1	EMBL	CDS	2876874	2878430	.	+	0	ID=cds2592;Parent=gene2643;Dbxref=EnsemblGenomes-Gn:azo2594,EnsemblGenomes-Tr:CAL95211,GOA:A1K8Q6,InterPro:IPR009056,UniProtKB/TrEMBL:A1K8Q6,NCBI_GP:CAL95211.1;Name=CAL95211.1;Note=Conserved hypothetical membrane protein. Homology to CV2219 of Chromobacterium violaceum of 36%25 (trembl|Q7NVX2(SRS)). no domains predicted. no signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95211.1;transl_table=11
AM406670.1	EMBL	gene	2878452	2879951	.	+	.	ID=gene2644;Name=azo2595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2595
AM406670.1	EMBL	CDS	2878452	2879951	.	+	0	ID=cds2593;Parent=gene2644;Dbxref=EnsemblGenomes-Gn:azo2595,EnsemblGenomes-Tr:CAL95212,GOA:A1K8Q7,InterPro:IPR009056,UniProtKB/TrEMBL:A1K8Q7,NCBI_GP:CAL95212.1;Name=CAL95212.1;Note=Conserved hypothetical secreted protein. Homology to Daro03002422 of Dechloromonas aromatica of 63%25 (gi|41723835|ref|ZP_00150725.1|(NBCI ENTREZ)). No domains predicted. No TMHs. signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95212.1;transl_table=11
AM406670.1	EMBL	gene	2879974	2880957	.	+	.	ID=gene2645;Name=azo2596;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2596
AM406670.1	EMBL	CDS	2879974	2880957	.	+	0	ID=cds2594;Parent=gene2645;Dbxref=EnsemblGenomes-Gn:azo2596,EnsemblGenomes-Tr:CAL95213,UniProtKB/TrEMBL:A1K8Q8,NCBI_GP:CAL95213.1;Name=CAL95213.1;Note=Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95213.1;transl_table=11
AM406670.1	EMBL	gene	2880971	2882566	.	+	.	ID=gene2646;Name=azo2597;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2597
AM406670.1	EMBL	CDS	2880971	2882566	.	+	0	ID=cds2595;Parent=gene2646;Dbxref=EnsemblGenomes-Gn:azo2597,EnsemblGenomes-Tr:CAL95214,GOA:A1K8Q9,InterPro:IPR000157,UniProtKB/TrEMBL:A1K8Q9,NCBI_GP:CAL95214.1;Name=CAL95214.1;Note=Hpyothetical protein with TIR domain. no homology to the data bank. Interpro: TIR domain Pfam: TIR doamin. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY)%2C box 2 (GYKLC-RD-PG)%2C and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signaling%2Cwhereas box 3 is primarily involved in directing localization of receptor%2C perhaps through interactions with cytoskeletal elements. no signal. peptide 2 TMHs;gbkey=CDS;product=hypothetical protein with TIR domain;protein_id=CAL95214.1;transl_table=11
AM406670.1	EMBL	gene	2882757	2884553	.	+	.	ID=gene2647;Name=azo2598;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2598
AM406670.1	EMBL	CDS	2882757	2884553	.	+	0	ID=cds2596;Parent=gene2647;Dbxref=EnsemblGenomes-Gn:azo2598,EnsemblGenomes-Tr:CAL95215,InterPro:IPR011990,InterPro:IPR013105,InterPro:IPR019734,UniProtKB/TrEMBL:A1K8R0,NCBI_GP:CAL95215.1;Name=CAL95215.1;Note=Conserved hypothetical secreted protein. Homology to SMb20495 of S.meliloti of 45%25 (tremble:Q92W68). Has 3 TPR repeats(IPR001440)(SMART:SM00028):The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins. It mediates protein-protein interactions and the assembly of multiprotein complexes. The TPR motif consists of 3 tandem-repeats of 34 amino acids residues%2C although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms%2C ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes%2C such as cell cycle regulation%2C transcriptional control%2Cmitochondrial and peroxisomal protein transport%2Cneurogenesis and protein folding. No TMH being reported present. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95215.1;transl_table=11
AM406670.1	EMBL	gene	2884563	2884940	.	-	.	ID=gene2648;Name=abp1;gbkey=Gene;gene=abp1;gene_biotype=protein_coding;locus_tag=azo2599
AM406670.1	EMBL	CDS	2884563	2884940	.	-	0	ID=cds2597;Parent=gene2648;Dbxref=EnsemblGenomes-Gn:azo2599,EnsemblGenomes-Tr:CAL95216,GOA:A1K8R1,InterPro:IPR000526,InterPro:IPR011051,InterPro:IPR014710,UniProtKB/TrEMBL:A1K8R1,NCBI_GP:CAL95216.1;Name=CAL95216.1;Note=Auxin-binding protein 1 precursor(ABP).This is probably a receptor for the plant hormone auxin. 34%25 Auxin_BP.IPR007113%3B Cupin_sup.IPR000886%3BER_target_S. Pfam:PF02041%3B Auxin_BP%3B 1.%3B~Function unclear;gbkey=CDS;gene=abp1;product=putative auxin-binding protein 1 precursor;protein_id=CAL95216.1;transl_table=11
AM406670.1	EMBL	gene	2885097	2885993	.	+	.	ID=gene2649;Name=azo2600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2600
AM406670.1	EMBL	CDS	2885097	2885993	.	+	0	ID=cds2598;Parent=gene2649;Dbxref=EnsemblGenomes-Gn:azo2600,EnsemblGenomes-Tr:CAL95217,GOA:A1K8R2,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K8R2,NCBI_GP:CAL95217.1;Name=CAL95217.1;Note=Transcriptional regulator%2C LysR family This protein activates the transcription of the lysA gene encoding diaminopimelate decarboxylase. LysR is also a negative regulator of its own expression. 37%25 1 helixturnhelix PF03466 LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~Specificity unclear;gbkey=CDS;product=transcriptional regulator%2C LysR family%2Cputative;protein_id=CAL95217.1;transl_table=11
AM406670.1	EMBL	gene	2886006	2886314	.	-	.	ID=gene2650;Name=azo2601;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2601
AM406670.1	EMBL	CDS	2886006	2886314	.	-	0	ID=cds2599;Parent=gene2650;Dbxref=EnsemblGenomes-Gn:azo2601,EnsemblGenomes-Tr:CAL95218,GOA:A1K8R3,InterPro:IPR017941,UniProtKB/TrEMBL:A1K8R3,NCBI_GP:CAL95218.1;Name=CAL95218.1;Note=Ferredoxin subunits of nitrite reductase. THIS SUBUNIT IS A 2FE-2S FERREDOXIN THAT TRANSFERS ELECTRONS TO IRON SULFUR PROTEIN COMPONENTS (ISP). Similar to nasE%2Cfrom S.aureus_N315 a naphthalene 12-dioxygenase system ferredoxin component.%3B~High confidence in function and specificity;gbkey=CDS;product=putative ferredoxin subunit of nitrite reductase;protein_id=CAL95218.1;transl_table=11
AM406670.1	EMBL	gene	2886484	2886741	.	-	.	ID=gene2651;Name=infA1;gbkey=Gene;gene=infA1;gene_biotype=protein_coding;locus_tag=azo2602
AM406670.1	EMBL	CDS	2886484	2886741	.	-	0	ID=cds2600;Parent=gene2651;Dbxref=EnsemblGenomes-Gn:azo2602,EnsemblGenomes-Tr:CAL95219,GOA:A1K8R4,InterPro:IPR004368,InterPro:IPR006196,InterPro:IPR012340,InterPro:IPR022967,NCBI_GP:CAL95219.1;Name=CAL95219.1;Note=Translation initiation factor IF-1. No specific function has so far been attributed to this initiation factor%3B however it seems to stimulate more or less all the activities of the other two initiation factors IF-2 and IF-3.%3B~Family membership;gbkey=CDS;gene=infA1;product=translation initiation factor IF-1;protein_id=CAL95219.1;transl_table=11
AM406670.1	EMBL	gene	2886879	2887082	.	-	.	ID=gene2652;Name=azo2603;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2603
AM406670.1	EMBL	CDS	2886879	2887082	.	-	0	ID=cds2601;Parent=gene2652;Dbxref=EnsemblGenomes-Gn:azo2603,EnsemblGenomes-Tr:CAL95220,GOA:A1K8R5,InterPro:IPR002059,InterPro:IPR011129,InterPro:IPR012156,InterPro:IPR012340,InterPro:IPR019844,UniProtKB/TrEMBL:A1K8R5,NCBI_GP:CAL95220.1;Name=CAL95220.1;Note=Cold shock-like protein%2C%3B~High confidence in function and specificity;gbkey=CDS;product=cold shock-like protein;protein_id=CAL95220.1;transl_table=11
AM406670.1	EMBL	gene	2887497	2888339	.	+	.	ID=gene2653;Name=azo2604;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2604
AM406670.1	EMBL	CDS	2887497	2888339	.	+	0	ID=cds2602;Parent=gene2653;Dbxref=EnsemblGenomes-Gn:azo2604,EnsemblGenomes-Tr:CAL95221,GOA:A1K8R6,InterPro:IPR000620,UniProtKB/TrEMBL:A1K8R6,NCBI_GP:CAL95221.1;Name=CAL95221.1;Note=Conserved hypothetical membrane protein. Homology to ORF62 of Pseudomonas of 60%25 (trembl|Q936Z8(SRS)). InterPro: Integral membrane protein DUF6. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transporter. Pfam: Integral membrane protein DUF6. probable 9 TMHs. signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95221.1;transl_table=11
AM406670.1	EMBL	gene	2888355	2888876	.	-	.	ID=gene2654;Name=azo2605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2605
AM406670.1	EMBL	CDS	2888355	2888876	.	-	0	ID=cds2603;Parent=gene2654;Dbxref=EnsemblGenomes-Gn:azo2605,EnsemblGenomes-Tr:CAL95222,UniProtKB/TrEMBL:A1K8R7,NCBI_GP:CAL95222.1;Name=CAL95222.1;Note=Conserved hypothetical membrane protein. Homology to cp98 of P. aeruginosa of 33%25 (tremblnew|AAP22587). no domains predicted. no signal peptide. 2 TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95222.1;transl_table=11
AM406670.1	EMBL	gene	2889090	2889527	.	+	.	ID=gene2655;Name=azo2606;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2606
AM406670.1	EMBL	CDS	2889090	2889527	.	+	0	ID=cds2604;Parent=gene2655;Dbxref=EnsemblGenomes-Gn:azo2606,EnsemblGenomes-Tr:CAL95223,InterPro:IPR021279,UniProtKB/TrEMBL:A1K8R8,NCBI_GP:CAL95223.1;Name=CAL95223.1;Note=Conserved hypothetical membrane protein. Homology to gsu0250 of G. sulfurreducens of 46%25 (tremblnew|AAR33584). no domains predicted. no signal peptide. 3 TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95223.1;transl_table=11
AM406670.1	EMBL	gene	2889532	2890509	.	-	.	ID=gene2656;Name=panE2;gbkey=Gene;gene=panE2;gene_biotype=protein_coding;locus_tag=azo2607
AM406670.1	EMBL	CDS	2889532	2890509	.	-	0	ID=cds2605;Parent=gene2656;Dbxref=EnsemblGenomes-Gn:azo2607,EnsemblGenomes-Tr:CAL95224,GOA:A1K8R9,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR013332,InterPro:IPR013752,InterPro:IPR016040,UniProtKB/TrEMBL:A1K8R9,NCBI_GP:CAL95224.1;Name=CAL95224.1;Note=Ketopantoate reductase (KPA reductase) (KPR). Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity). TIGRFAM: apbA_panE: 2-dehydropantoate 2-reductas%3B~High confidence in function and specificity;gbkey=CDS;gene=panE2;product=2-dehydropantoate 2-reductase;protein_id=CAL95224.1;transl_table=11
AM406670.1	EMBL	gene	2890560	2891330	.	-	.	ID=gene2657;Name=azo2608;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2608
AM406670.1	EMBL	CDS	2890560	2891330	.	-	0	ID=cds2606;Parent=gene2657;Dbxref=EnsemblGenomes-Gn:azo2608,EnsemblGenomes-Tr:CAL95225,InterPro:IPR001303,UniProtKB/TrEMBL:A1K8S0,NCBI_GP:CAL95225.1;Name=CAL95225.1;Note=42%25 Aldolase_II_N.Class II Aldolase and Adducin N-terminal domain. Pfam: PF00596%3B Aldolase_II%3B 1. TIGR: PP2871.%3B~High confidence in function and specificity;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95225.1;transl_table=11
AM406670.1	EMBL	gene	2891520	2892491	.	-	.	ID=gene2658;Name=azo2609;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2609
AM406670.1	EMBL	CDS	2891520	2892491	.	-	0	ID=cds2607;Parent=gene2658;Dbxref=EnsemblGenomes-Gn:azo2609,EnsemblGenomes-Tr:CAL95226,GOA:A1K8S1,InterPro:IPR005135,UniProtKB/TrEMBL:A1K8S1,NCBI_GP:CAL95226.1;Name=CAL95226.1;Note=Conserved hypothetical endonuclease/exonuclease/phosphatase family protein. Homology to RPBDRAFT_0804 of Rhodopseudomonas palustris HaA2 of 315. Pfam: Exo_endo_phos. Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18 e.g APEX1_HUMAN%2C DNase I proteins EC:3.1.21.1 e.g. DNAS1_HUMAN%2C Synaptojanin an inositol-1%2C4%2C5-trisphosphate phosphatase EC:3.1.3.56 SYNJ1_HUMAN%2C Sphingomyelinase EC:3.1.4.12 PHL2_BACCE and Nocturnin NOCT_MOUSE. no TMHs. no signal peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical endonuclease/exonuclease/phosphatase family protein;protein_id=CAL95226.1;transl_table=11
AM406670.1	EMBL	gene	2892605	2894734	.	-	.	ID=gene2659;Name=fhuA2;gbkey=Gene;gene=fhuA2;gene_biotype=protein_coding;locus_tag=azo2610
AM406670.1	EMBL	CDS	2892605	2894734	.	-	0	ID=cds2608;Parent=gene2659;Dbxref=EnsemblGenomes-Gn:azo2610,EnsemblGenomes-Tr:CAL95227,GOA:A1K8S2,InterPro:IPR000531,InterPro:IPR010105,InterPro:IPR010917,InterPro:IPR012910,UniProtKB/TrEMBL:A1K8S2,NCBI_GP:CAL95227.1;Name=CAL95227.1;Note=In E.coli this receptor binds the ferrichrome-iron ligand. It interacts with the tonB protein%2C which is responsible for energy coupling of the ferrichrome-promoted iron transport system. Acts as a receptor for bacteriophage T5 as well as T1%2C phi80 and colicin M. Binding of T5 triggers the opening of a high conductance ion channel. Can also transport the antibiotic albomycin. Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=fhuA2;product=putative ferrichrome-iron TonB-dependent receptor;protein_id=CAL95227.1;transl_table=11
AM406670.1	EMBL	gene	2894837	2895472	.	-	.	ID=gene2660;Name=azo2611;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2611
AM406670.1	EMBL	CDS	2894837	2895472	.	-	0	ID=cds2609;Parent=gene2660;Dbxref=EnsemblGenomes-Gn:azo2611,EnsemblGenomes-Tr:CAL95228,UniProtKB/TrEMBL:A1K8S3,NCBI_GP:CAL95228.1;Name=CAL95228.1;Note=Conserved hypothetical membrane protein. Homology to rs00511 of R. solanacearum of 32%25 (trembl|Q8XUW6(SRS)). No domains predicted. singal peptide. 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95228.1;transl_table=11
AM406670.1	EMBL	gene	2895707	2896642	.	-	.	ID=gene2661;Name=azo2612;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2612
AM406670.1	EMBL	CDS	2895707	2896642	.	-	0	ID=cds2610;Parent=gene2661;Dbxref=EnsemblGenomes-Gn:azo2612,EnsemblGenomes-Tr:CAL95229,InterPro:IPR000160,InterPro:IPR003018,InterPro:IPR029016,InterPro:IPR029787,UniProtKB/TrEMBL:A1K8S4,NCBI_GP:CAL95229.1;Name=CAL95229.1;Note=GAF/GGDEF-domain containing protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=GAF/GGDEF-domain containing protein;protein_id=CAL95229.1;transl_table=11
AM406670.1	EMBL	gene	2896686	2897087	.	-	.	ID=gene2662;Name=azo2613;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2613
AM406670.1	EMBL	CDS	2896686	2897087	.	-	0	ID=cds2611;Parent=gene2662;Dbxref=EnsemblGenomes-Gn:azo2613,EnsemblGenomes-Tr:CAL95230,GOA:A1K8S5,InterPro:IPR006913,InterPro:IPR011057,UniProtKB/TrEMBL:A1K8S5,NCBI_GP:CAL95230.1;Name=CAL95230.1;Note=Hypothetical protein%2C 50%25 identity (59%25 simialrity)to TrEMBL%3BQ92TJ5. Has PF04828%2C Protein of unknown function (DUF636)%3BIPR006913%2C GFA%3BThis family of proteins has no known function%2C but several strongly conserved cysteine residues. Glutathione-dependent formaldehyde-activating enzymes catalyze the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione. All known members of this family contain 5 strongly conserved cysteine residues. NO Signal peptide or TMH present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95230.1;transl_table=11
AM406670.1	EMBL	gene	2897216	2897596	.	-	.	ID=gene2663;Name=azo2614;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2614
AM406670.1	EMBL	CDS	2897216	2897596	.	-	0	ID=cds2612;Parent=gene2663;Dbxref=EnsemblGenomes-Gn:azo2614,EnsemblGenomes-Tr:CAL95231,UniProtKB/TrEMBL:A1K8S6,NCBI_GP:CAL95231.1;Name=CAL95231.1;Note=Conserved hypothetical membrane protein. Homology to Saro02001549 of Novosphingobium aromaticivorans of 37%25 (gi|48849438|ref|ZP_00303681.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95231.1;transl_table=11
AM406670.1	EMBL	gene	2897663	2898382	.	-	.	ID=gene2664;Name=azo2615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2615
AM406670.1	EMBL	CDS	2897663	2898382	.	-	0	ID=cds2613;Parent=gene2664;Dbxref=EnsemblGenomes-Gn:azo2615,EnsemblGenomes-Tr:CAL95232,InterPro:IPR001279,InterPro:IPR025638,UniProtKB/TrEMBL:A1K8S7,NCBI_GP:CAL95232.1;Name=CAL95232.1;Note=Hypothetical protein%2C45%25 similarity to TrEMBL%3BQ6LHM7. No Good homology over entire length in the DB. No signal Peptide or TMH present.%3B~Function unclear;gbkey=CDS;product=hypothetical protein;protein_id=CAL95232.1;transl_table=11
AM406670.1	EMBL	gene	2898514	2898939	.	-	.	ID=gene2665;Name=azo2616;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2616
AM406670.1	EMBL	CDS	2898514	2898939	.	-	0	ID=cds2614;Parent=gene2665;Dbxref=EnsemblGenomes-Gn:azo2616,EnsemblGenomes-Tr:CAL95233,GOA:A1K8S8,InterPro:IPR025870,InterPro:IPR029068,UniProtKB/TrEMBL:A1K8S8,NCBI_GP:CAL95233.1;Name=CAL95233.1;Note=Puatative Glyoxalase sub unit%2C 37%25 identitcal to TrEMBL%3BQ89MF5 Has PF00903%2C Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily%3BIPR004360%2C Gly_bleo_diox: Glyoxalase I%2C catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid . The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. This domain is found in other related proteins including the Bleomycin resistance protein and dioxygenases eg. 4-hydroxyphenylpyruvate dioxygenase. No SIgnal Peptide or TMH reported present.%3B~Family membership;gbkey=CDS;product=lactoylglutathione lyase;protein_id=CAL95233.1;transl_table=11
AM406670.1	EMBL	gene	2898954	2899577	.	-	.	ID=gene2666;Name=azo2617;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2617
AM406670.1	EMBL	CDS	2898954	2899577	.	-	0	ID=cds2615;Parent=gene2666;Dbxref=EnsemblGenomes-Gn:azo2617,EnsemblGenomes-Tr:CAL95234,GOA:A1K8S9,InterPro:IPR023214,UniProtKB/TrEMBL:A1K8S9,NCBI_GP:CAL95234.1;Name=CAL95234.1;Note=TREMBL:Q89L44: 48%25 identity.64%25 similarity. probable haloacid dehalogenase-like hydrolase. InterPro:IPR005834%3B Hydrolase. Pfam:PF00702%3B Hydrolase%3B Phosphoglycolate phosphatase(PGP). TIGR00099: conserved hypothetical prot%3B~Function unclear;gbkey=CDS;product=hydrolase%2C haloacid dehalogenase-like family;protein_id=CAL95234.1;transl_table=11
AM406670.1	EMBL	gene	2899574	2900011	.	-	.	ID=gene2667;Name=soxR;gbkey=Gene;gene=soxR;gene_biotype=protein_coding;locus_tag=azo2618
AM406670.1	EMBL	CDS	2899574	2900011	.	-	0	ID=cds2616;Parent=gene2667;Dbxref=EnsemblGenomes-Gn:azo2618,EnsemblGenomes-Tr:CAL95235,GOA:A1K8T0,InterPro:IPR000551,InterPro:IPR009061,InterPro:IPR010211,UniProtKB/TrEMBL:A1K8T0,NCBI_GP:CAL95235.1;Name=CAL95235.1;Note=Probable redox-sensitive transcriptional activator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=soxR;product=probable redox-sensitive transcriptional activator;protein_id=CAL95235.1;transl_table=11
AM406670.1	EMBL	gene	2900083	2900940	.	+	.	ID=gene2668;Name=azo2619;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2619
AM406670.1	EMBL	CDS	2900083	2900940	.	+	0	ID=cds2617;Parent=gene2668;Dbxref=EnsemblGenomes-Gn:azo2619,EnsemblGenomes-Tr:CAL95236,GOA:A1K8T1,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:A1K8T1,NCBI_GP:CAL95236.1;Name=CAL95236.1;Note=Similar to TREMBL:Q98BY2 (39%25 identity)%3B TREMBL:Q9A2R1 (40%25 identity)%3B TREMBL:Q89KG6 (34%25 identity). Pfam (PF01209): ubiE/COQ5 methyltransferase family.%3B~Function unclear;gbkey=CDS;product=putative methyltransferase;protein_id=CAL95236.1;transl_table=11
AM406670.1	EMBL	gene	2900950	2901330	.	-	.	ID=gene2669;Name=azo2620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2620
AM406670.1	EMBL	CDS	2900950	2901330	.	-	0	ID=cds2618;Parent=gene2669;Dbxref=EnsemblGenomes-Gn:azo2620,EnsemblGenomes-Tr:CAL95237,UniProtKB/TrEMBL:A1K8T2,NCBI_GP:CAL95237.1;Name=CAL95237.1;Note=Hypothetical membrane protein. no homology to the data bank. no domains predicted signal peptide. 3 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95237.1;transl_table=11
AM406670.1	EMBL	gene	2901512	2902048	.	-	.	ID=gene2670;Name=azo2621;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2621
AM406670.1	EMBL	CDS	2901512	2902048	.	-	0	ID=cds2619;Parent=gene2670;Dbxref=EnsemblGenomes-Gn:azo2621,EnsemblGenomes-Tr:CAL95238,InterPro:IPR010323,InterPro:IPR011990,UniProtKB/TrEMBL:A1K8T3,NCBI_GP:CAL95238.1;Name=CAL95238.1;Note=Conserved hypothetical protein. Homology to VPA0111 of V.parahaemolyticus of 62%25 (trembl:Q87JY7). Has (IPR010323)PF06041%2C Bacterial protein of unknown function (DUF924)%3BThis family consists of several hypothetical bacterial proteins of unknown function. NO signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95238.1;transl_table=11
AM406670.1	EMBL	gene	2902117	2903265	.	-	.	ID=gene2671;Name=azo2622;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2622
AM406670.1	EMBL	CDS	2902117	2903265	.	-	0	ID=cds2620;Parent=gene2671;Dbxref=EnsemblGenomes-Gn:azo2622,EnsemblGenomes-Tr:CAL95239,InterPro:IPR000160,InterPro:IPR029787,UniProtKB/TrEMBL:A1K8T4,NCBI_GP:CAL95239.1;Name=CAL95239.1;Note=Conserved hypothetical membrane protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95239.1;transl_table=11
AM406670.1	EMBL	gene	2903667	2904227	.	-	.	ID=gene2672;Name=azo2623;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2623
AM406670.1	EMBL	CDS	2903667	2904227	.	-	0	ID=cds2621;Parent=gene2672;Dbxref=EnsemblGenomes-Gn:azo2623,EnsemblGenomes-Tr:CAL95240,InterPro:IPR018958,UniProtKB/TrEMBL:A1K8T5,NCBI_GP:CAL95240.1;Name=CAL95240.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95240.1;transl_table=11
AM406670.1	EMBL	gene	2904323	2904757	.	+	.	ID=gene2673;Name=azo2624;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2624
AM406670.1	EMBL	CDS	2904323	2904757	.	+	0	ID=cds2622;Parent=gene2673;Dbxref=EnsemblGenomes-Gn:azo2624,EnsemblGenomes-Tr:CAL95241,InterPro:IPR008490,UniProtKB/TrEMBL:A1K8T6,NCBI_GP:CAL95241.1;Name=CAL95241.1;Note=Hypothetical truncated transposase. Homology to tnp23 of Azoarcus sp. EbN1 of 86%25 (gnl|keqq|eba:ebA2478(KEGG)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=hypothetical truncated transposase;protein_id=CAL95241.1;transl_table=11
AM406670.1	EMBL	gene	2904840	2904950	.	+	.	ID=gene2674;Name=azo2625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2625
AM406670.1	EMBL	CDS	2904840	2904950	.	+	0	ID=cds2623;Parent=gene2674;Dbxref=EnsemblGenomes-Gn:azo2625,EnsemblGenomes-Tr:CAL95242,UniProtKB/TrEMBL:A1K8T7,NCBI_GP:CAL95242.1;Name=CAL95242.1;Note=Hypothetical truncated transposase. Homology to tnp23 of Azoarcus sp. EbN1 of 87%25 (gnl|keqq|eba:ebA2478(KEGG)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=hypothetical truncated transposase;protein_id=CAL95242.1;transl_table=11
AM406670.1	EMBL	gene	2904985	2905281	.	+	.	ID=gene2675;Name=azo2626;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2626
AM406670.1	EMBL	CDS	2904985	2905281	.	+	0	ID=cds2624;Parent=gene2675;Dbxref=EnsemblGenomes-Gn:azo2626,EnsemblGenomes-Tr:CAL95243,UniProtKB/TrEMBL:A1K8T8,NCBI_GP:CAL95243.1;Name=CAL95243.1;Note=Hypothetical truncated transposase. Homology to tnp23 of Azoarcus sp. EbN1 of 86%25 (gnl|keqq|eba:ebA2478(KEGG)). No domains predicted. No signal peptide. No TMHs.%2C%3B~Family membership;gbkey=CDS;product=hypothetical truncated transposase;protein_id=CAL95243.1;transl_table=11
AM406670.1	EMBL	gene	2905435	2906151	.	-	.	ID=gene2676;Name=azo2627;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2627
AM406670.1	EMBL	CDS	2905435	2906151	.	-	0	ID=cds2625;Parent=gene2676;Dbxref=EnsemblGenomes-Gn:azo2627,EnsemblGenomes-Tr:CAL95244,UniProtKB/TrEMBL:A1K8T9,NCBI_GP:CAL95244.1;Name=CAL95244.1;Note=Conserved hypothetical protein. Homology to an orf of Polaromanas sp JS666 of 41%25 No domain predicted. No signal peptide No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95244.1;transl_table=11
AM406670.1	EMBL	gene	2906296	2906745	.	-	.	ID=gene2677;Name=azo2628;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2628
AM406670.1	EMBL	CDS	2906296	2906745	.	-	0	ID=cds2626;Parent=gene2677;Dbxref=EnsemblGenomes-Gn:azo2628,EnsemblGenomes-Tr:CAL95245,UniProtKB/TrEMBL:A1K8U0,NCBI_GP:CAL95245.1;Name=CAL95245.1;Note=Hypothetical membrane protein. Homology to yptb3870 of Y. pseudotuberculosis of 29%25 (tremble:Q664A2). No domains predicted. No signal peptide. 1 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95245.1;transl_table=11
AM406670.1	EMBL	gene	2907060	2907413	.	-	.	ID=gene2678;Name=azo2629;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2629
AM406670.1	EMBL	CDS	2907060	2907413	.	-	0	ID=cds2627;Parent=gene2678;Dbxref=EnsemblGenomes-Gn:azo2629,EnsemblGenomes-Tr:CAL95246,InterPro:IPR024399,UniProtKB/TrEMBL:A1K8U1,NCBI_GP:CAL95246.1;Name=CAL95246.1;Note=Conserved hypothetical protein. Homology to an orf of Exiguobacterium sp. 255-15 (ZP_00355791). No domains predicted. No signal peptide. 2 TMHs;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95246.1;transl_table=11
AM406670.1	EMBL	gene	2907867	2911886	.	-	.	ID=gene2679;Name=azo2630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2630
AM406670.1	EMBL	CDS	2907867	2911886	.	-	0	ID=cds2628;Parent=gene2679;Dbxref=EnsemblGenomes-Gn:azo2630,EnsemblGenomes-Tr:CAL95247,GOA:A1K8U2,InterPro:IPR003672,UniProtKB/TrEMBL:A1K8U2,NCBI_GP:CAL95247.1;Name=CAL95247.1;Note=CobN Magnesium Chelatase family protein%2C by similarity.%3B~Family membership;gbkey=CDS;product=cobalamin biosynthesis protein%2C putative;protein_id=CAL95247.1;transl_table=11
AM406670.1	EMBL	gene	2911883	2912239	.	-	.	ID=gene2680;Name=azo2631;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2631
AM406670.1	EMBL	CDS	2911883	2912239	.	-	0	ID=cds2629;Parent=gene2680;Dbxref=EnsemblGenomes-Gn:azo2631,EnsemblGenomes-Tr:CAL95248,InterPro:IPR018676,UniProtKB/TrEMBL:A1K8U3,NCBI_GP:CAL95248.1;Name=CAL95248.1;Note=Conserved hypothetical membrane protein. Homology to NE0632 of Nitrosomonas europaea of 42%25 (trembl|Q82WN6(SRS)). no domains predicted. no signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95248.1;transl_table=11
AM406670.1	EMBL	gene	2912250	2912711	.	-	.	ID=gene2681;Name=azo2632;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2632
AM406670.1	EMBL	CDS	2912250	2912711	.	-	0	ID=cds2630;Parent=gene2681;Dbxref=EnsemblGenomes-Gn:azo2632,EnsemblGenomes-Tr:CAL95249,UniProtKB/TrEMBL:A1K8U4,NCBI_GP:CAL95249.1;Name=CAL95249.1;Note=Conserved hypothetical membrane protein. Homology to PA1924 of P. aeruginosa of 43%25 (trembl|Q9I2I0(SRS)). No domains predicted. no signal peptide. probable 3TMHS%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95249.1;transl_table=11
AM406670.1	EMBL	gene	2913014	2913775	.	+	.	ID=gene2682;Name=tam;gbkey=Gene;gene=tam;gene_biotype=protein_coding;locus_tag=azo2633
AM406670.1	EMBL	CDS	2913014	2913775	.	+	0	ID=cds2631;Parent=gene2682;Dbxref=EnsemblGenomes-Gn:azo2633,EnsemblGenomes-Tr:CAL95250,GOA:A1K8U5,InterPro:IPR023149,InterPro:IPR023506,InterPro:IPR029063,NCBI_GP:CAL95250.1;Name=CAL95250.1;Note=Probable trans-aconitate 2-methyltransferase. Homology to tam of E. coli of 48%25 (sprot|TAM_ECOLI). Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate (By similarity). Pfam: PTS system%2C Lactose/Cellobiose specific no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=tam;product=probable trans-aconitate 2-methyltransferase;protein_id=CAL95250.1;transl_table=11
AM406670.1	EMBL	gene	2913806	2914276	.	-	.	ID=gene2683;Name=azo2634;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2634
AM406670.1	EMBL	CDS	2913806	2914276	.	-	0	ID=cds2632;Parent=gene2683;Dbxref=EnsemblGenomes-Gn:azo2634,EnsemblGenomes-Tr:CAL95251,UniProtKB/TrEMBL:A1K8U6,NCBI_GP:CAL95251.1;Name=CAL95251.1;Note=Hypothetical membrane protein. no homology to the data bank. no domains predicted. 1 TMHs. no signal peptide;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95251.1;transl_table=11
AM406670.1	EMBL	gene	2914273	2914899	.	-	.	ID=gene2684;Name=azo2635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2635
AM406670.1	EMBL	CDS	2914273	2914899	.	-	0	ID=cds2633;Parent=gene2684;Dbxref=EnsemblGenomes-Gn:azo2635,EnsemblGenomes-Tr:CAL95252,UniProtKB/TrEMBL:A1K8U7,NCBI_GP:CAL95252.1;Name=CAL95252.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95252.1;transl_table=11
AM406670.1	EMBL	gene	2915051	2915770	.	-	.	ID=gene2685;Name=azo2636;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2636
AM406670.1	EMBL	CDS	2915051	2915770	.	-	0	ID=cds2634;Parent=gene2685;Dbxref=EnsemblGenomes-Gn:azo2636,EnsemblGenomes-Tr:CAL95253,GOA:A1K8U8,InterPro:IPR006439,InterPro:IPR023214,UniProtKB/TrEMBL:A1K8U8,NCBI_GP:CAL95253.1;Name=CAL95253.1;Note=TREMBL:Q7MF75: 35%25 identity%3B 50%25 similarity. IPR006323%3B Phosphonoacetaldehyde hydrolase IPR010976%3B Beta-phosphoglucomutase hydrolase This group of sequences represent part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (IPR005834). The superfamily is defined by the presence of three short catalytic motifs. Hypothetical protein yhcW. InterPro:IPR006402%3B HAD-SF-IA-v3. IPR005833%3B Halogease/hydrolase. Pfam: PF00702%3B Hydrolase Absence of signal peptide (Signal P predicted) and transmembrane helices (TMHMM predicted) IPR005834%3B Hydrolase. TIGR00099: conserved hypothetical protein%3B~Family membership;gbkey=CDS;product=putative CbbY family protein;protein_id=CAL95253.1;transl_table=11
AM406670.1	EMBL	gene	2915888	2916406	.	-	.	ID=gene2686;Name=azo2637;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2637
AM406670.1	EMBL	CDS	2915888	2916406	.	-	0	ID=cds2635;Parent=gene2686;Dbxref=EnsemblGenomes-Gn:azo2637,EnsemblGenomes-Tr:CAL95254,InterPro:IPR002589,UniProtKB/TrEMBL:A1K8U9,NCBI_GP:CAL95254.1;Name=CAL95254.1;Note=Conserved hypothetical protein. Homology to RSc0334 of R. solanacearum of 59%25 (sprot:Y334_RALSO). Pfam: Appr-1-p processing enzyme. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95254.1;transl_table=11
AM406670.1	EMBL	gene	2916466	2918697	.	-	.	ID=gene2687;Name=azo2638;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2638
AM406670.1	EMBL	CDS	2916466	2918697	.	-	0	ID=cds2636;Parent=gene2687;Dbxref=EnsemblGenomes-Gn:azo2638,EnsemblGenomes-Tr:CAL95255,GOA:A1K8V0,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR027417,UniProtKB/TrEMBL:A1K8V0,NCBI_GP:CAL95255.1;Name=CAL95255.1;Note=Conserved hypothetical ATPase. Homology to rsc1961 of R. solanacearum of 37%25 (trembl|Q8XY02). Pfam: Atpase familly associated with various cellular activities (domaine 1 from 300 aa to 499 aa%2C domaine 2 from 543 to 723 aa). no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical ATPase;protein_id=CAL95255.1;transl_table=11
AM406670.1	EMBL	gene	2918694	2919161	.	-	.	ID=gene2688;Name=azo2639;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2639
AM406670.1	EMBL	CDS	2918694	2919161	.	-	0	ID=cds2637;Parent=gene2688;Dbxref=EnsemblGenomes-Gn:azo2639,EnsemblGenomes-Tr:CAL95256,UniProtKB/TrEMBL:A1K8V1,NCBI_GP:CAL95256.1;Name=CAL95256.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95256.1;transl_table=11
AM406670.1	EMBL	gene	2919238	2920236	.	+	.	ID=gene2689;Name=mdcH;gbkey=Gene;gene=mdcH;gene_biotype=protein_coding;locus_tag=azo2640
AM406670.1	EMBL	CDS	2919238	2920236	.	+	0	ID=cds2638;Parent=gene2689;Dbxref=EnsemblGenomes-Gn:azo2640,EnsemblGenomes-Tr:CAL95257,InterPro:IPR026881,UniProtKB/TrEMBL:A1K8V2,NCBI_GP:CAL95257.1;Name=CAL95257.1;Note=Putative transcriptional factor;gbkey=CDS;gene=mdcH;product=putative transcriptional factor;protein_id=CAL95257.1;transl_table=11
AM406670.1	EMBL	gene	2920329	2921015	.	-	.	ID=gene2690;Name=azo2641;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2641
AM406670.1	EMBL	CDS	2920329	2921015	.	-	0	ID=cds2639;Parent=gene2690;Dbxref=EnsemblGenomes-Gn:azo2641,EnsemblGenomes-Tr:CAL95258,InterPro:IPR018306,UniProtKB/TrEMBL:A1K8V3,NCBI_GP:CAL95258.1;Name=CAL95258.1;Note=Hypothetical protein. No homology to the data base. No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=hypothetical protein;protein_id=CAL95258.1;transl_table=11
AM406670.1	EMBL	gene	2921150	2921314	.	-	.	ID=gene2691;Name=azo2642;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2642
AM406670.1	EMBL	CDS	2921150	2921314	.	-	0	ID=cds2640;Parent=gene2691;Dbxref=EnsemblGenomes-Gn:azo2642,EnsemblGenomes-Tr:CAL95259,UniProtKB/TrEMBL:A1K8V4,NCBI_GP:CAL95259.1;Name=CAL95259.1;Note=Hypothetical protein%2C very weak homology with any hits in the database. Has %2C No domains%2C repeats%2C motifs or features could be predicted with confidence above threshold scores.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL95259.1;transl_table=11
AM406670.1	EMBL	gene	2921344	2921907	.	-	.	ID=gene2692;Name=azo2643;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2643
AM406670.1	EMBL	CDS	2921344	2921907	.	-	0	ID=cds2641;Parent=gene2692;Dbxref=EnsemblGenomes-Gn:azo2643,EnsemblGenomes-Tr:CAL95260,GOA:A1K8V5,InterPro:IPR000340,InterPro:IPR000387,InterPro:IPR029021,UniProtKB/TrEMBL:A1K8V5,NCBI_GP:CAL95260.1;Name=CAL95260.1;Note=Putative dual specificity protein phosphatase%2C%3B~Function unclear;gbkey=CDS;product=putative dual specificity protein phosphatase;protein_id=CAL95260.1;transl_table=11
AM406670.1	EMBL	gene	2922087	2923211	.	+	.	ID=gene2693;Name=draG2;gbkey=Gene;gene=draG2;gene_biotype=protein_coding;locus_tag=azo2644
AM406670.1	EMBL	CDS	2922087	2923211	.	+	0	ID=cds2642;Parent=gene2693;Dbxref=EnsemblGenomes-Gn:azo2644,EnsemblGenomes-Tr:CAL95261,GOA:A1K8V6,InterPro:IPR005502,UniProtKB/TrEMBL:A1K8V6,NCBI_GP:CAL95261.1;Name=CAL95261.1;Note=Putative ADP-ribosyl-[dinitrogen reductase] hydrolase. Homology to draG of R. rubrum of 24%25 (sprot|DRAG_RHORU) Involved in the regulation of the nitrogen fixation activity by the reversible ADP-ribosylation of the dinitrogenase reductase component of the nitrogenase enzyme complex. Pfam: ADP-ribosylglycohydrolase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=draG2;product=putative ADP-ribosyl-[dinitrogen reductase] hydrolase;protein_id=CAL95261.1;transl_table=11
AM406670.1	EMBL	gene	2923248	2923661	.	+	.	ID=gene2694;Name=azo2645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2645
AM406670.1	EMBL	CDS	2923248	2923661	.	+	0	ID=cds2643;Parent=gene2694;Dbxref=EnsemblGenomes-Gn:azo2645,EnsemblGenomes-Tr:CAL95262,UniProtKB/TrEMBL:A1K8V7,NCBI_GP:CAL95262.1;Name=CAL95262.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95262.1;transl_table=11
AM406670.1	EMBL	gene	2923798	2924244	.	+	.	ID=gene2695;Name=azo2646;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2646
AM406670.1	EMBL	CDS	2923798	2924244	.	+	0	ID=cds2644;Parent=gene2695;Dbxref=EnsemblGenomes-Gn:azo2646,EnsemblGenomes-Tr:CAL95263,UniProtKB/TrEMBL:A1K8V8,NCBI_GP:CAL95263.1;Name=CAL95263.1;Note=Conserved hypothetical protein. Homology to Bucepa03000629 of Burkholderia cepacia of 47%25 (gi|46324491|ref|ZP_00224852.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95263.1;transl_table=11
AM406670.1	EMBL	gene	2924331	2925149	.	-	.	ID=gene2696;Name=dlhH;gbkey=Gene;gene=dlhH;gene_biotype=protein_coding;locus_tag=azo2647
AM406670.1	EMBL	CDS	2924331	2925149	.	-	0	ID=cds2645;Parent=gene2696;Dbxref=EnsemblGenomes-Gn:azo2647,EnsemblGenomes-Tr:CAL95264,GOA:A1K8V9,InterPro:IPR002925,InterPro:IPR029058,UniProtKB/TrEMBL:A1K8V9,NCBI_GP:CAL95264.1;Name=CAL95264.1;Note=Similar to SWISSPROT:P71505 (50%25 identity)%2CSWISSPROT:Q8X8L4 (49%25 identity). Pfam (PF01738): Dienelactone hydrolase family.%3B~High confidence in function and specificity;gbkey=CDS;gene=dlhH;product=putative carboxymethylenebutenolidase;protein_id=CAL95264.1;transl_table=11
AM406670.1	EMBL	gene	2925146	2926453	.	-	.	ID=gene2697;Name=azo2648;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2648
AM406670.1	EMBL	CDS	2925146	2926453	.	-	0	ID=cds2646;Parent=gene2697;Dbxref=EnsemblGenomes-Gn:azo2648,EnsemblGenomes-Tr:CAL95265,InterPro:IPR010290,InterPro:IPR016196,UniProtKB/TrEMBL:A1K8W0,NCBI_GP:CAL95265.1;Name=CAL95265.1;Note=Region start changed from 2926444 to 2926426 (-18 bases);gbkey=CDS;product=probable MFS permease;protein_id=CAL95265.1;transl_table=11
AM406670.1	EMBL	gene	2926624	2928333	.	-	.	ID=gene2698;Name=azo2649;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2649
AM406670.1	EMBL	CDS	2926624	2928333	.	-	0	ID=cds2647;Parent=gene2698;Dbxref=EnsemblGenomes-Gn:azo2649,EnsemblGenomes-Tr:CAL95266,GOA:A1K8W1,InterPro:IPR000160,InterPro:IPR001610,InterPro:IPR003660,InterPro:IPR029787,UniProtKB/TrEMBL:A1K8W1,NCBI_GP:CAL95266.1;Name=CAL95266.1;Note=GGDEF family protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=GGDEF family protein;protein_id=CAL95266.1;transl_table=11
AM406670.1	EMBL	gene	2928487	2928744	.	-	.	ID=gene2699;Name=azo2650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2650
AM406670.1	EMBL	CDS	2928487	2928744	.	-	0	ID=cds2648;Parent=gene2699;Dbxref=EnsemblGenomes-Gn:azo2650,EnsemblGenomes-Tr:CAL95267,UniProtKB/TrEMBL:A1K8W2,NCBI_GP:CAL95267.1;Name=CAL95267.1;Note=Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. TMH in signal peptide;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95267.1;transl_table=11
AM406670.1	EMBL	gene	2928823	2929257	.	-	.	ID=gene2700;Name=azo2651;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2651
AM406670.1	EMBL	CDS	2928823	2929257	.	-	0	ID=cds2649;Parent=gene2700;Dbxref=EnsemblGenomes-Gn:azo2651,EnsemblGenomes-Tr:CAL95268,GOA:A1K8W3,InterPro:IPR012933,UniProtKB/TrEMBL:A1K8W3,NCBI_GP:CAL95268.1;Name=CAL95268.1;Note=Conserved hypothetical protein. Homology to ebD23 of Azoarcus sp. EbN1 of 44%25 (gnl|keqq|eba:ebD23(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95268.1;transl_table=11
AM406670.1	EMBL	gene	2929286	2929984	.	+	.	ID=gene2701;Name=azo2652;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2652
AM406670.1	EMBL	CDS	2929286	2929984	.	+	0	ID=cds2650;Parent=gene2701;Dbxref=EnsemblGenomes-Gn:azo2652,EnsemblGenomes-Tr:CAL95269,InterPro:IPR008217,UniProtKB/TrEMBL:A1K8W4,NCBI_GP:CAL95269.1;Name=CAL95269.1;Note=Conserved hypothetical membrane protein. Homology to CC0717 of Caulobacter crescentus of 66%25 (trembl|Q9AA89(SRS)). Also homology to noduline 21 of G. max of 33%25 (sprot|NO21_SOYBN(SRS)). Has PF01988%2C(IPR008217)Integral membrane protein DUF125%3BThis family of predicted integral membrane proteins has no known function. However it does include P47818%2C that may have a role in regulating calcium levels. no signal peptide. 5 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95269.1;transl_table=11
AM406670.1	EMBL	gene	2930124	2931599	.	+	.	ID=gene2702;Name=pitA;gbkey=Gene;gene=pitA;gene_biotype=protein_coding;locus_tag=azo2653
AM406670.1	EMBL	CDS	2930124	2931599	.	+	0	ID=cds2651;Parent=gene2702;Dbxref=EnsemblGenomes-Gn:azo2653,EnsemblGenomes-Tr:CAL95270,GOA:A1K8W5,InterPro:IPR001204,UniProtKB/TrEMBL:A1K8W5,NCBI_GP:CAL95270.1;Name=CAL95270.1;Note=Probable low-affinity phosphate transporter protein%2C PitA. Involved in phosphate transport depending on the proton motive force in E.coli. Similar to Pho-4%2C a cation-phosphate symporter in N. crassa. InterPro: Phosphate transporter family Signal peptide.%3B~High confidence in function and specificity;gbkey=CDS;gene=pitA;product=putative phosphate transporter;protein_id=CAL95270.1;transl_table=11
AM406670.1	EMBL	gene	2931633	2932103	.	-	.	ID=gene2703;Name=azo2654;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2654
AM406670.1	EMBL	CDS	2931633	2932103	.	-	0	ID=cds2652;Parent=gene2703;Dbxref=EnsemblGenomes-Gn:azo2654,EnsemblGenomes-Tr:CAL95271,GOA:A1K8W6,InterPro:IPR025870,InterPro:IPR029068,UniProtKB/TrEMBL:A1K8W6,NCBI_GP:CAL95271.1;Name=CAL95271.1;Note=Glyoxalase family protein%2C 54%25 identity (67%25 similarity) to TrEMBL%3BQ88HB6. Has PF00903%2CGlyoxalase/Bleomycin resistance protein/Dioxygenase superfamily%3BIPR004360%2C Gly_bleo_diox: Glyoxalase I catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. This domain is found in other related proteins including the Bleomycin resistance protein and dioxygenases eg. 4-hydroxyphenylpyruvate dioxygenase.%3B~Family membership;gbkey=CDS;product=lactoylglutathione lyase;protein_id=CAL95271.1;transl_table=11
AM406670.1	EMBL	gene	2932255	2933628	.	+	.	ID=gene2704;Name=azo2655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2655
AM406670.1	EMBL	CDS	2932255	2933628	.	+	0	ID=cds2653;Parent=gene2704;Dbxref=EnsemblGenomes-Gn:azo2655,EnsemblGenomes-Tr:CAL95272,InterPro:IPR029063,UniProtKB/TrEMBL:A1K8W7,NCBI_GP:CAL95272.1;Name=CAL95272.1;Note=Hypothetical membrane protein. No homology of the entire protein to a protein of similar length. no domains predicted. singal peptie. 6 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95272.1;transl_table=11
AM406670.1	EMBL	gene	2933625	2933957	.	+	.	ID=gene2705;Name=azo2656;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2656
AM406670.1	EMBL	CDS	2933625	2933957	.	+	0	ID=cds2654;Parent=gene2705;Dbxref=EnsemblGenomes-Gn:azo2656,EnsemblGenomes-Tr:CAL95273,GOA:A1K8W8,InterPro:IPR003844,NCBI_GP:CAL95273.1;Name=CAL95273.1;Note=Conserved hypothetical membrane protein. Homology to S1719 of Photobacterium profundum of 73%25 (tremblnew|CAG22368). Has PF02694%2C Uncharacterized BCR%2CYnfA/UPF0060 family%3BIPR003844%3BThis entry describes integral membrane proteins of unknown function. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95273.1;transl_table=11
AM406670.1	EMBL	gene	2934063	2934839	.	+	.	ID=gene2706;Name=fpr2;gbkey=Gene;gene=fpr2;gene_biotype=protein_coding;locus_tag=azo2657
AM406670.1	EMBL	CDS	2934063	2934839	.	+	0	ID=cds2655;Parent=gene2706;Dbxref=EnsemblGenomes-Gn:azo2657,EnsemblGenomes-Tr:CAL95274,GOA:A1K8W9,InterPro:IPR001433,InterPro:IPR001709,InterPro:IPR008333,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1K8W9,NCBI_GP:CAL95274.1;Name=CAL95274.1;Note=Ferredoxin-NADP+ reductase (EC 1.18.1.2) Homology to fpr of A. vinelandii of 75%25 (sprot|FENR_AZOVI). CATALYTIC ACTIVITY: Reduced ferredoxin + NADP(+) %3D oxidized ferredoxin + NADPH. Interpro: Oxidoreductase FAD and NAD8P)-binding domain (IPR001433)%3B NADH: cytochrome b5 reductase (CBR) (IPR001834) Pfam: Oxidoreductase FAD-binding doamin%3B Oxidoreductase NAD-binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fpr2;product=ferredoxin-NADP+ reductase;protein_id=CAL95274.1;transl_table=11
AM406670.1	EMBL	gene	2934938	2935267	.	+	.	ID=gene2707;Name=trxA2;gbkey=Gene;gene=trxA2;gene_biotype=protein_coding;locus_tag=azo2658
AM406670.1	EMBL	CDS	2934938	2935267	.	+	0	ID=cds2656;Parent=gene2707;Dbxref=EnsemblGenomes-Gn:azo2658,EnsemblGenomes-Tr:CAL95275,GOA:A1K8X0,InterPro:IPR012336,InterPro:IPR013766,UniProtKB/TrEMBL:A1K8X0,NCBI_GP:CAL95275.1;Name=CAL95275.1;Note=Putative thioredoxin-disulfide reductase. Homology to trxA (ECs4714) of E. coli of 27%25. Participates in various redox reactions through the reversible oxidation of the active center dithiol to a dislufide. InterPro: Thioredoxin (IPR006662) no TMHs%3B~Family membership;gbkey=CDS;gene=trxA2;product=putative thioredoxin-disulfide reductase;protein_id=CAL95275.1;transl_table=11
AM406670.1	EMBL	gene	2935396	2935866	.	+	.	ID=gene2708;Name=azo2659;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2659
AM406670.1	EMBL	CDS	2935396	2935866	.	+	0	ID=cds2657;Parent=gene2708;Dbxref=EnsemblGenomes-Gn:azo2659,EnsemblGenomes-Tr:CAL95276,InterPro:IPR019545,UniProtKB/TrEMBL:A1K8X1,NCBI_GP:CAL95276.1;Name=CAL95276.1;Note=Conserved hypothetical secreted protein. Homology to PJS6w01001981 of Polaromonas sp. JS666 of 70%25 (gi|54030965|ref|ZP_00363100.1|(NBCI ENTREZ)). No domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95276.1;transl_table=11
AM406670.1	EMBL	gene	2935880	2936356	.	+	.	ID=gene2709;Name=ybcL;gbkey=Gene;gene=ybcL;gene_biotype=protein_coding;locus_tag=azo2660
AM406670.1	EMBL	CDS	2935880	2936356	.	+	0	ID=cds2658;Parent=gene2709;Dbxref=EnsemblGenomes-Gn:azo2660,EnsemblGenomes-Tr:CAL95277,InterPro:IPR005247,InterPro:IPR008914,UniProtKB/TrEMBL:A1K8X2,NCBI_GP:CAL95277.1;Name=CAL95277.1;Note=Hypothetical protein TC0109. TREMBL:Q8XTTO: 64%25 identity%2C 75%25 similarity. This entry describes a family of conserved hypothetical proteins with no known function. InterPro:IPR005247%3B Cons_hypoth481. IPR008914%3B PEBP. Pfam: PF01161%3B PBP Absence of signal peptide. Absence of TMH's%3B~Function unclear;gbkey=CDS;gene=ybcL;product=conserved hypothetical protein;protein_id=CAL95277.1;transl_table=11
AM406670.1	EMBL	gene	2936540	2937082	.	+	.	ID=gene2710;Name=azo2661;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2661
AM406670.1	EMBL	CDS	2936540	2937082	.	+	0	ID=cds2659;Parent=gene2710;Dbxref=EnsemblGenomes-Gn:azo2661,EnsemblGenomes-Tr:CAL95278,InterPro:IPR001623,UniProtKB/TrEMBL:A1K8X3,NCBI_GP:CAL95278.1;Name=CAL95278.1;Note=Hypothetical protein which carries at the C-terminus a DnaJ N-terminal domain. InterPro: DnaJ N-terminal domain (IPR001623) Pfam: DnaJ domain no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein;protein_id=CAL95278.1;transl_table=11
AM406670.1	EMBL	gene	2937338	2938783	.	+	.	ID=gene2711;Name=azo2662;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2662
AM406670.1	EMBL	CDS	2937338	2938783	.	+	0	ID=cds2660;Parent=gene2711;Dbxref=EnsemblGenomes-Gn:azo2662,EnsemblGenomes-Tr:CAL95279,InterPro:IPR021139,InterPro:IPR025605,InterPro:IPR029060,UniProtKB/TrEMBL:A1K8X4,NCBI_GP:CAL95279.1;Name=CAL95279.1;Note=Conserved hypothetical protein. Homology to ebA2897 of Azoarcus sp. EbN1 of 61%25 (gnl|keqq|eba:ebA2897(KEGG)). Has PF01936%2C Protein of unknown function DUF88%3B(IPR002790). This highly conserved bacterial protein has no known function. The alignment contains many conserved aspartates%2C suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase (Bateman A pers. obs). Coils2 Program predcit presence of Coiled Coil. No Signal Peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95279.1;transl_table=11
AM406670.1	EMBL	gene	2938853	2939512	.	-	.	ID=gene2712;Name=azo2663;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2663
AM406670.1	EMBL	CDS	2938853	2939512	.	-	0	ID=cds2661;Parent=gene2712;Dbxref=EnsemblGenomes-Gn:azo2663,EnsemblGenomes-Tr:CAL95280,GOA:A1K8X5,InterPro:IPR000866,InterPro:IPR012336,InterPro:IPR019479,InterPro:IPR024706,UniProtKB/TrEMBL:A1K8X5,NCBI_GP:CAL95280.1;Name=CAL95280.1;Note=Conserve peroxiredoxin. Homology to mll2432 of M. loti of 74%25 (trembl|Q98IF0). Involved in redox regulation of the cell. Can reduce H(2)O(2) and short chain organic fatty acid and phospholipid hydroperoxides. May play a role in the regulation of phospholipid turnover as well as in protection against oxidative injury. Pfam: AhpC/TSA family no TMHs. No signal peptide.%3B~Family membership;gbkey=CDS;product=conserved hypothetical peroxiredoxin;protein_id=CAL95280.1;transl_table=11
AM406670.1	EMBL	gene	2939583	2939930	.	+	.	ID=gene2713;Name=azo2664;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2664
AM406670.1	EMBL	CDS	2939583	2939930	.	+	0	ID=cds2662;Parent=gene2713;Dbxref=EnsemblGenomes-Gn:azo2664,EnsemblGenomes-Tr:CAL95281,UniProtKB/TrEMBL:A1K8X6,NCBI_GP:CAL95281.1;Name=CAL95281.1;Note=Conserved hypothetical protein. Homology to TdenA01001041 of Thiobacillus denitrificans of 39%25 (gi|52007163|ref|ZP_00334541.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95281.1;transl_table=11
AM406670.1	EMBL	gene	2939940	2940662	.	-	.	ID=gene2714;Name=azo2665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2665
AM406670.1	EMBL	CDS	2939940	2940662	.	-	0	ID=cds2663;Parent=gene2714;Dbxref=EnsemblGenomes-Gn:azo2665,EnsemblGenomes-Tr:CAL95282,InterPro:IPR007372,UniProtKB/TrEMBL:A1K8X7,NCBI_GP:CAL95282.1;Name=CAL95282.1;Note=Hypothetical secreted protein. No homology of the entire protein to the data bank. no domains predicted signal peptide no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95282.1;transl_table=11
AM406670.1	EMBL	gene	2940920	2941666	.	-	.	ID=gene2715;Name=azo2666;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2666
AM406670.1	EMBL	CDS	2940920	2941666	.	-	0	ID=cds2664;Parent=gene2715;Dbxref=EnsemblGenomes-Gn:azo2666,EnsemblGenomes-Tr:CAL95283,UniProtKB/TrEMBL:A1K8X8,NCBI_GP:CAL95283.1;Name=CAL95283.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95283.1;transl_table=11
AM406670.1	EMBL	gene	2941903	2942196	.	+	.	ID=gene2716;Name=nolR;gbkey=Gene;gene=nolR;gene_biotype=protein_coding;locus_tag=azo2667
AM406670.1	EMBL	CDS	2941903	2942196	.	+	0	ID=cds2665;Parent=gene2716;Dbxref=EnsemblGenomes-Gn:azo2667,EnsemblGenomes-Tr:CAL95284,GOA:A1K8X9,InterPro:IPR001845,InterPro:IPR011991,UniProtKB/TrEMBL:A1K8X9,NCBI_GP:CAL95284.1;Name=CAL95284.1;Note=Putative transcriptional repressor%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=nolR;product=putative transcriptional repressor;protein_id=CAL95284.1;transl_table=11
AM406670.1	EMBL	gene	2942246	2943358	.	+	.	ID=gene2717;Name=nerA;gbkey=Gene;gene=nerA;gene_biotype=protein_coding;locus_tag=azo2668
AM406670.1	EMBL	CDS	2942246	2943358	.	+	0	ID=cds2666;Parent=gene2717;Dbxref=EnsemblGenomes-Gn:azo2668,EnsemblGenomes-Tr:CAL95285,GOA:A1K8Y0,InterPro:IPR001155,InterPro:IPR013785,UniProtKB/TrEMBL:A1K8Y0,NCBI_GP:CAL95285.1;Name=CAL95285.1;Note=Probable glycerol trinitrate reductase. Homology to nerA of A. radiobacter of 66%25 (trembl|O31246) InterPro: NADH:flavin oxidoreductase/NADH oxidase (IPR001155) Pfam: NADH:flavin oxidoreductase/NADH oxidase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=nerA;product=probable glycerol trinitrate reductase;protein_id=CAL95285.1;transl_table=11
AM406670.1	EMBL	gene	2943448	2944503	.	-	.	ID=gene2718;Name=azo2669;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2669
AM406670.1	EMBL	CDS	2943448	2944503	.	-	0	ID=cds2667;Parent=gene2718;Dbxref=EnsemblGenomes-Gn:azo2669,EnsemblGenomes-Tr:CAL95286,GOA:A1K8Y1,InterPro:IPR009056,UniProtKB/TrEMBL:A1K8Y1,NCBI_GP:CAL95286.1;Name=CAL95286.1;Note=Conserved hypothetical cytochrome c family protein. Homology to bra0353 of B. suis of 50%25 (trembl|Q8FWU2). InterPro: Cytochrome c class I (IPR003088). Pfam: cytochrome c. signal peptide. no TMHS%3B~Function unclear;gbkey=CDS;product=conserved hypothetical cytochrome c family protein;protein_id=CAL95286.1;transl_table=11
AM406670.1	EMBL	gene	2944870	2945280	.	+	.	ID=gene2719;Name=azo2670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2670
AM406670.1	EMBL	CDS	2944870	2945280	.	+	0	ID=cds2668;Parent=gene2719;Dbxref=EnsemblGenomes-Gn:azo2670,EnsemblGenomes-Tr:CAL95287,UniProtKB/TrEMBL:A1K8Y2,NCBI_GP:CAL95287.1;Name=CAL95287.1;Note=Conserved hypothetical secreted protein. Homology to gsu0710 of G. sulfurreducens of 66%25 (tremblnew|AAR34040). no doamins predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95287.1;transl_table=11
AM406670.1	EMBL	gene	2945296	2945943	.	-	.	ID=gene2720;Name=fixJ1;gbkey=Gene;gene=fixJ1;gene_biotype=protein_coding;locus_tag=azo2671
AM406670.1	EMBL	CDS	2945296	2945943	.	-	0	ID=cds2669;Parent=gene2720;Dbxref=EnsemblGenomes-Gn:azo2671,EnsemblGenomes-Tr:CAL95288,GOA:A1K8Y3,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K8Y3,NCBI_GP:CAL95288.1;Name=CAL95288.1;Note=Transcriptional regulatory protein%2C%3B~Specificity unclear;gbkey=CDS;gene=fixJ1;product=two-component response regulator;protein_id=CAL95288.1;transl_table=11
AM406670.1	EMBL	gene	2945927	2947732	.	-	.	ID=gene2721;Name=azo2672;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2672
AM406670.1	EMBL	CDS	2945927	2947732	.	-	0	ID=cds2670;Parent=gene2721;Dbxref=EnsemblGenomes-Gn:azo2672,EnsemblGenomes-Tr:CAL95289,GOA:A1K8Y4,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1K8Y4,NCBI_GP:CAL95289.1;Name=CAL95289.1;Note=Conserved hypothetical sensor histidine kinase%2CMODULATES THE ACTIVITY OF FIXJ A TRANSCRIPTIONAL ACTIVATOR OF NITROGEN FIXATION FIXK GENE. FIXL PROBABLY ACTS AS A KINASE THAT PHOSPHORYLATES FIXJ.%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical sensor histidine kinase;protein_id=CAL95289.1;transl_table=11
AM406670.1	EMBL	gene	2947962	2948441	.	+	.	ID=gene2722;Name=azo2673;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2673
AM406670.1	EMBL	CDS	2947962	2948441	.	+	0	ID=cds2671;Parent=gene2722;Dbxref=EnsemblGenomes-Gn:azo2673,EnsemblGenomes-Tr:CAL95290,InterPro:IPR009725,InterPro:IPR028973,InterPro:IPR029068,UniProtKB/TrEMBL:A1K8Y5,NCBI_GP:CAL95290.1;Name=CAL95290.1;Note=Hypothetical protein%2C69%25 Identity (75%25 similarity) to TrEMBl%3BQ8XS84 Has PF06983%2C 3-demethylubiquinone-9 3-methyltransferase%3BIPR009725 3-dmu-93-mtfrase%3BThis family represents a conserved region approximately 100 residues long within a number of bacterial and archaeal 3-demethylubiquinone-9 3-methyltransferases (EC:2.1.1.64). Note that some family members contain more than one copy of this region%2C and that many members are hypothetical proteins.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95290.1;transl_table=11
AM406670.1	EMBL	gene	2949219	2950808	.	-	.	ID=gene2723;Name=azo2674;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2674
AM406670.1	EMBL	CDS	2949219	2950808	.	-	0	ID=cds2672;Parent=gene2723;Dbxref=EnsemblGenomes-Gn:azo2674,EnsemblGenomes-Tr:CAL95291,UniProtKB/TrEMBL:A1K8Y6,NCBI_GP:CAL95291.1;Name=CAL95291.1;Note=Conserved hypothetical membrane protein. Homology to Bcep02002160 of Burkholderia fungorum of 35%25 (gi|48787369|ref|ZP_00283451.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. 6 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95291.1;transl_table=11
AM406670.1	EMBL	gene	2950840	2951982	.	-	.	ID=gene2724;Name=azo2675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2675
AM406670.1	EMBL	CDS	2950840	2951982	.	-	0	ID=cds2673;Parent=gene2724;Dbxref=EnsemblGenomes-Gn:azo2675,EnsemblGenomes-Tr:CAL95292,GOA:A1K8Y7,InterPro:IPR000653,InterPro:IPR012749,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K8Y7,NCBI_GP:CAL95292.1;Name=CAL95292.1;Note=Lipopolysaccharide biosynthesis protein rffA. InterPro: DegT/DnrJ/EryC1/StrS family%3B~Specificity unclear;gbkey=CDS;product=aminotransferase;protein_id=CAL95292.1;transl_table=11
AM406670.1	EMBL	gene	2952049	2952921	.	-	.	ID=gene2725;Name=azo2676;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2676
AM406670.1	EMBL	CDS	2952049	2952921	.	-	0	ID=cds2674;Parent=gene2725;Dbxref=EnsemblGenomes-Gn:azo2676,EnsemblGenomes-Tr:CAL95293,GOA:A1K8Y8,InterPro:IPR029063,UniProtKB/TrEMBL:A1K8Y8,NCBI_GP:CAL95293.1;Name=CAL95293.1;Note=Similar to TREMBL:Q82SX7 (48%25 identity%2C 66%25 similarity%2C generic methyl transferase). Pfam (PF01209): ubiE/COQ5 methyltransferase family. TIGRFAM (TIGR00091): conserved hypothetical protein. TMHMM reporting one transmembrane helix.%3B~Function unclear;gbkey=CDS;product=putative methyltransferase;protein_id=CAL95293.1;transl_table=11
AM406670.1	EMBL	gene	2952918	2953337	.	-	.	ID=gene2726;Name=azo2677;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2677
AM406670.1	EMBL	CDS	2952918	2953337	.	-	0	ID=cds2675;Parent=gene2726;Dbxref=EnsemblGenomes-Gn:azo2677,EnsemblGenomes-Tr:CAL95294,GOA:A1K8Y9,InterPro:IPR007267,UniProtKB/TrEMBL:A1K8Y9,NCBI_GP:CAL95294.1;Name=CAL95294.1;Note=Conserved hypothetical membrane protein. Homology to NE2170 of Nitrosomonas europaea of 44%25 (trembl|Q82SX6(SRS)). Pfam: GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95294.1;transl_table=11
AM406670.1	EMBL	gene	2953334	2954254	.	-	.	ID=gene2727;Name=azo2678;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2678
AM406670.1	EMBL	CDS	2953334	2954254	.	-	0	ID=cds2676;Parent=gene2727;Dbxref=EnsemblGenomes-Gn:azo2678,EnsemblGenomes-Tr:CAL95295,InterPro:IPR023296,UniProtKB/TrEMBL:A1K8Z0,NCBI_GP:CAL95295.1;Name=CAL95295.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95295.1;transl_table=11
AM406670.1	EMBL	gene	2954285	2954947	.	-	.	ID=gene2728;Name=azo2679;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2679
AM406670.1	EMBL	CDS	2954285	2954947	.	-	0	ID=cds2677;Parent=gene2728;Dbxref=EnsemblGenomes-Gn:azo2679,EnsemblGenomes-Tr:CAL95296,InterPro:IPR001451,InterPro:IPR011004,InterPro:IPR020019,UniProtKB/TrEMBL:A1K8Z1,NCBI_GP:CAL95296.1;Name=CAL95296.1;Note=InterPro: Bacterial transferase hexapeptide repeat%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein%2C possibly an acyltransferase;protein_id=CAL95296.1;transl_table=11
AM406670.1	EMBL	gene	2954944	2955885	.	-	.	ID=gene2729;Name=azo2680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2680
AM406670.1	EMBL	CDS	2954944	2955885	.	-	0	ID=cds2678;Parent=gene2729;Dbxref=EnsemblGenomes-Gn:azo2680,EnsemblGenomes-Tr:CAL95297,GOA:A1K8Z2,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:A1K8Z2,NCBI_GP:CAL95297.1;Name=CAL95297.1;Note=Bactoprenol glucosyl transferase (EC 2.4.1.-). Involved in O antigen modification. Catalyzes the transfer of the glucose residue from UDP-glucose to a lipid carrier (By similarity).%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95297.1;transl_table=11
AM406670.1	EMBL	gene	2955882	2956574	.	-	.	ID=gene2730;Name=azo2681;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2681
AM406670.1	EMBL	CDS	2955882	2956574	.	-	0	ID=cds2679;Parent=gene2730;Dbxref=EnsemblGenomes-Gn:azo2681,EnsemblGenomes-Tr:CAL95298,InterPro:IPR014985,UniProtKB/TrEMBL:A1K8Z3,NCBI_GP:CAL95298.1;Name=CAL95298.1;Note=High confidence in function and specificity;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95298.1;transl_table=11
AM406670.1	EMBL	gene	2957374	2957898	.	+	.	ID=gene2731;Name=azo2682;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2682
AM406670.1	EMBL	CDS	2957374	2957898	.	+	0	ID=cds2680;Parent=gene2731;Dbxref=EnsemblGenomes-Gn:azo2682,EnsemblGenomes-Tr:CAL95299,UniProtKB/TrEMBL:A1K8Z4,NCBI_GP:CAL95299.1;Name=CAL95299.1;Note=Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95299.1;transl_table=11
AM406670.1	EMBL	gene	2957907	2958251	.	+	.	ID=gene2732;Name=azo2683;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2683
AM406670.1	EMBL	CDS	2957907	2958251	.	+	0	ID=cds2681;Parent=gene2732;Dbxref=EnsemblGenomes-Gn:azo2683,EnsemblGenomes-Tr:CAL95300,InterPro:IPR027417,UniProtKB/TrEMBL:A1K8Z5,NCBI_GP:CAL95300.1;Name=CAL95300.1;Note=Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95300.1;transl_table=11
AM406670.1	EMBL	gene	2958597	2959409	.	-	.	ID=gene2733;Name=azo2684;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2684
AM406670.1	EMBL	CDS	2958597	2959409	.	-	0	ID=cds2682;Parent=gene2733;Dbxref=EnsemblGenomes-Gn:azo2684,EnsemblGenomes-Tr:CAL95301,GOA:A1K8Z6,InterPro:IPR011010,InterPro:IPR023109,InterPro:IPR025166,UniProtKB/TrEMBL:A1K8Z6,NCBI_GP:CAL95301.1;Name=CAL95301.1;Note=putative prophage integrase%3B~Family membership;gbkey=CDS;product=putative integrase;protein_id=CAL95301.1;transl_table=11
AM406670.1	EMBL	gene	2959702	2960079	.	-	.	ID=gene2734;Name=azo_rRNA_0001;gbkey=Gene;gene_biotype=misc_RNA;locus_tag=azo_rRNA_0001
AM406670.1	EMBL	transcript	2959702	2960079	.	-	.	ID=rna51;Parent=gene2734;gbkey=misc_RNA
AM406670.1	EMBL	exon	2959702	2960079	.	-	.	ID=id52;Parent=rna51;gbkey=misc_RNA
AM406670.1	EMBL	gene	2960329	2962404	.	+	.	ID=gene2735;Name=azo2685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2685
AM406670.1	EMBL	CDS	2960329	2962404	.	+	0	ID=cds2683;Parent=gene2735;Dbxref=EnsemblGenomes-Gn:azo2685,EnsemblGenomes-Tr:CAL95302,InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR029787,UniProtKB/TrEMBL:A1K8Z7,NCBI_GP:CAL95302.1;Name=CAL95302.1;Note=GGDEF/EAL/PAS-domain containing protein;gbkey=CDS;product=GGDEF/EAL/PAS-domain containing protein;protein_id=CAL95302.1;transl_table=11
AM406670.1	EMBL	gene	2962600	2962675	.	-	.	ID=gene2736;Name=tRNA-Thr;gbkey=Gene;gene=tRNA-Thr;gene_biotype=tRNA;locus_tag=azo_tRNA_0046
AM406670.1	EMBL	tRNA	2962600	2962675	.	-	.	ID=rna52;Parent=gene2736;anticodon=(pos:complement(2962640..2962642));gbkey=tRNA;gene=tRNA-Thr;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Thr
AM406670.1	EMBL	exon	2962600	2962675	.	-	.	ID=id53;Parent=rna52;anticodon=(pos:complement(2962640..2962642));gbkey=tRNA;gene=tRNA-Thr;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Thr
AM406670.1	EMBL	gene	2962857	2963009	.	+	.	ID=gene2737;Name=azo2687;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2687
AM406670.1	EMBL	CDS	2962857	2963009	.	+	0	ID=cds2684;Parent=gene2737;Dbxref=EnsemblGenomes-Gn:azo2687,EnsemblGenomes-Tr:CAL95303,UniProtKB/TrEMBL:A1K8Z8,NCBI_GP:CAL95303.1;Name=CAL95303.1;Note=Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide present. TMH in signal peptide.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95303.1;transl_table=11
AM406670.1	EMBL	gene	2963024	2963503	.	-	.	ID=gene2738;Name=creA;gbkey=Gene;gene=creA;gene_biotype=protein_coding;locus_tag=azo2688
AM406670.1	EMBL	CDS	2963024	2963503	.	-	0	ID=cds2685;Parent=gene2738;Dbxref=EnsemblGenomes-Gn:azo2688,EnsemblGenomes-Tr:CAL95304,InterPro:IPR010292,UniProtKB/TrEMBL:A1K8Z9,NCBI_GP:CAL95304.1;Name=CAL95304.1;Note=Putative periplasmic protein [creA]%2C59%25 identity (77%25 similarity) to SwissProt%3BP08367. TrEMBL%3B Q8XZD0(59%25 identity). Has PF05981%2C CreA protein%3BIPR010292%2C CreA: This family consists of several bacterial CreA proteins%2C the function of which is unknown.%3B~High confidence in function and specificity;gbkey=CDS;gene=creA;product=putative periplasmic protein [creA];protein_id=CAL95304.1;transl_table=11
AM406670.1	EMBL	gene	2963500	2963913	.	-	.	ID=gene2739;Name=azo2689;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2689
AM406670.1	EMBL	CDS	2963500	2963913	.	-	0	ID=cds2686;Parent=gene2739;Dbxref=EnsemblGenomes-Gn:azo2689,EnsemblGenomes-Tr:CAL95305,InterPro:IPR016103,UniProtKB/TrEMBL:A1K900,NCBI_GP:CAL95305.1;Name=CAL95305.1;Note=Conserved hypothetical protein. Homology to Daro03001159 of Dechloromonas aromatica of 50%25 (gi|41726181|ref|ZP_00152939.1|(NBCI ENTREZ)). Pfam: ProQ activator of osmoprotectant transpoter ProP. This family includes ProQ%2C which is required for full activation of the osmoprotectant transporter%2C ProQ%2C in Escherichia coli. no signal. peptide no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95305.1;transl_table=11
AM406670.1	EMBL	gene	2964056	2965018	.	+	.	ID=gene2740;Name=azo2690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2690
AM406670.1	EMBL	CDS	2964056	2965018	.	+	0	ID=cds2687;Parent=gene2740;Dbxref=EnsemblGenomes-Gn:azo2690,EnsemblGenomes-Tr:CAL95306,InterPro:IPR007791,InterPro:IPR029024,UniProtKB/TrEMBL:A1K901,NCBI_GP:CAL95306.1;Name=CAL95306.1;Note=Conserved hypothetical protein. Homology to ebA7139 of Azoarcus sp. EbN1 of 64%25 (gnl|keqq|eba:ebA7139(KEGG)). No domains predicted. No signal peptide. No TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95306.1;transl_table=11
AM406670.1	EMBL	gene	2965210	2967042	.	+	.	ID=gene2741;Name=azo2691;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2691
AM406670.1	EMBL	CDS	2965210	2967042	.	+	0	ID=cds2688;Parent=gene2741;Dbxref=EnsemblGenomes-Gn:azo2691,EnsemblGenomes-Tr:CAL95307,InterPro:IPR000160,InterPro:IPR029787,UniProtKB/TrEMBL:A1K902,NCBI_GP:CAL95307.1;Name=CAL95307.1;Note=GGDEF family protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=GGDEF family protein;protein_id=CAL95307.1;transl_table=11
AM406670.1	EMBL	gene	2967068	2968882	.	+	.	ID=gene2742;Name=azo2692;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2692
AM406670.1	EMBL	CDS	2967068	2968882	.	+	0	ID=cds2689;Parent=gene2742;Dbxref=EnsemblGenomes-Gn:azo2692,EnsemblGenomes-Tr:CAL95308,InterPro:IPR000160,InterPro:IPR029787,UniProtKB/TrEMBL:A1K903,NCBI_GP:CAL95308.1;Name=CAL95308.1;Note=GGDEF family protein;gbkey=CDS;product=GGDEF family protein;protein_id=CAL95308.1;transl_table=11
AM406670.1	EMBL	gene	2969110	2970591	.	+	.	ID=gene2743;Name=fliC2;gbkey=Gene;gene=fliC2;gene_biotype=protein_coding;locus_tag=azo2693
AM406670.1	EMBL	CDS	2969110	2970591	.	+	0	ID=cds2690;Parent=gene2743;Dbxref=EnsemblGenomes-Gn:azo2693,EnsemblGenomes-Tr:CAL95309,GOA:A1K904,InterPro:IPR001029,InterPro:IPR001492,InterPro:IPR010810,UniProtKB/TrEMBL:A1K904,NCBI_GP:CAL95309.1;Name=CAL95309.1;Note=Flagellin. Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. InterPro: Flagellin N-terminus%2C Flagellin C-terminus Pfam: Bacterial flagellin N-terminus%2C bacterial flagellin C-terminus no signal peptide no TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=fliC2;product=flagellin;protein_id=CAL95309.1;transl_table=11
AM406670.1	EMBL	gene	2970739	2971869	.	+	.	ID=gene2744;Name=azo2694;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2694
AM406670.1	EMBL	CDS	2970739	2971869	.	+	0	ID=cds2691;Parent=gene2744;Dbxref=EnsemblGenomes-Gn:azo2694,EnsemblGenomes-Tr:CAL95310,GOA:A1K905,InterPro:IPR000653,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1K905,NCBI_GP:CAL95310.1;Name=CAL95310.1;Note=InterPro: DegT/DnrJ/EryC1/StrS family%3B~Specificity unclear;gbkey=CDS;product=nucleotide sugar aminotransferase;protein_id=CAL95310.1;transl_table=11
AM406670.1	EMBL	gene	2971926	2973140	.	+	.	ID=gene2745;Name=azo2695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2695
AM406670.1	EMBL	CDS	2971926	2973140	.	+	0	ID=cds2692;Parent=gene2745;Dbxref=EnsemblGenomes-Gn:azo2695,EnsemblGenomes-Tr:CAL95311,GOA:A1K906,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,InterPro:IPR023214,UniProtKB/TrEMBL:A1K906,NCBI_GP:CAL95311.1;Name=CAL95311.1;Note=Conserved hypothetical protein. Homology to BF2580 of Bacteroides fragilis of 47%25 (gnl|keqq|bfr:BF2580(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95311.1;transl_table=11
AM406670.1	EMBL	gene	2973203	2974009	.	+	.	ID=gene2746;Name=azo2696;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2696
AM406670.1	EMBL	CDS	2973203	2974009	.	+	0	ID=cds2693;Parent=gene2746;Dbxref=EnsemblGenomes-Gn:azo2696,EnsemblGenomes-Tr:CAL95312,InterPro:IPR008884,UniProtKB/TrEMBL:A1K907,NCBI_GP:CAL95312.1;Name=CAL95312.1;Note=Conserved hypothetical protein. Homology to Mmc102000919 of Magnetococcus sp. MC-1 of 48%25 (gi|48833619|ref|ZP_00290637.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95312.1;transl_table=11
AM406670.1	EMBL	gene	2974127	2975602	.	+	.	ID=gene2747;Name=azo2697;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2697
AM406670.1	EMBL	CDS	2974127	2975602	.	+	0	ID=cds2694;Parent=gene2747;Dbxref=EnsemblGenomes-Gn:azo2697,EnsemblGenomes-Tr:CAL95313,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:A1K908,NCBI_GP:CAL95313.1;Name=CAL95313.1;Note=Hypothetical protein. No homology of the entire protein with the data base. InterPro: Glycosyl transferase family 2. Diverse family%2C transferring sugar from UDP-glucose%2C UDP-N-acetyl- galactosamine%2C GDP-mannose or CDP-abequose%2C to a range of substrates including cellulose%2Cdolichol phosphate and teichoic acids. No signal peptide. No TMHs;gbkey=CDS;product=hypothetical protein;protein_id=CAL95313.1;transl_table=11
AM406670.1	EMBL	gene	2975648	2976952	.	+	.	ID=gene2748;Name=pepM;gbkey=Gene;gene=pepM;gene_biotype=protein_coding;locus_tag=azo2698
AM406670.1	EMBL	CDS	2975648	2976952	.	+	0	ID=cds2695;Parent=gene2748;Dbxref=EnsemblGenomes-Gn:azo2698,EnsemblGenomes-Tr:CAL95314,GOA:A1K909,InterPro:IPR004821,InterPro:IPR012698,InterPro:IPR014729,InterPro:IPR015813,UniProtKB/TrEMBL:A1K909,NCBI_GP:CAL95314.1;Name=CAL95314.1;Note=Phosphoenolpyruvate phosphomutase precursor(Phosphoenolpyruvate mutase) (PEP mutase) (PEP phosphomutase).FORMATION OF A CARBON-PHOSPHORUS BOND BY CONVERTING PHOSPHOENOLPYRUVATE (PEP) TO PHOSPHONOPYRUVATE (P-PYR). 34%25 Isocit_lyase_ph.%3B~High confidence in function and specificity;gbkey=CDS;gene=pepM;product=putative phosphoenolpyruvate phosphomutase;protein_id=CAL95314.1;transl_table=11
AM406670.1	EMBL	gene	2976949	2978073	.	+	.	ID=gene2749;Name=azo2699;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2699
AM406670.1	EMBL	CDS	2976949	2978073	.	+	0	ID=cds2696;Parent=gene2749;Dbxref=EnsemblGenomes-Gn:azo2699,EnsemblGenomes-Tr:CAL95315,GOA:A1K910,InterPro:IPR011766,InterPro:IPR012001,InterPro:IPR017684,InterPro:IPR029061,UniProtKB/TrEMBL:A1K910,NCBI_GP:CAL95315.1;Name=CAL95315.1;Note=3-phosphonopyruvate decarboxylase (EC 4.1.1.-). InterPro: Thiamine pyrophosphate dependent enzyme acolac_lg: acetolactate synthase large subunit%2Cbiosynthetic type%3B~Family membership;gbkey=CDS;product=phosphonopyruvate decarboxylase%2C putative;protein_id=CAL95315.1;transl_table=11
AM406670.1	EMBL	gene	2978078	2979187	.	+	.	ID=gene2750;Name=azo2700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2700
AM406670.1	EMBL	CDS	2978078	2979187	.	+	0	ID=cds2697;Parent=gene2750;Dbxref=EnsemblGenomes-Gn:azo2700,EnsemblGenomes-Tr:CAL95316,GOA:A1K911,InterPro:IPR001670,InterPro:IPR017775,UniProtKB/TrEMBL:A1K911,NCBI_GP:CAL95316.1;Name=CAL95316.1;Note=Conserved hypothetical alcohol dehydrogenase. Homology to bp2820 of B. pertussis of 29%25 (TREMBL:Q7VV69). InterPro: Iron-containing alcohol dehydrogenase (IPR001670). Pfam: Iron-containing alcohol dehydrogenase. no signal peptide. no TMHs.%3B~Family membership;gbkey=CDS;product=conserved hypothetical alcohol dehydrogenase;protein_id=CAL95316.1;transl_table=11
AM406670.1	EMBL	gene	2979203	2980453	.	+	.	ID=gene2751;Name=azo2701;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2701
AM406670.1	EMBL	CDS	2979203	2980453	.	+	0	ID=cds2698;Parent=gene2751;Dbxref=EnsemblGenomes-Gn:azo2701,EnsemblGenomes-Tr:CAL95317,GOA:A1K912,InterPro:IPR007554,UniProtKB/TrEMBL:A1K912,NCBI_GP:CAL95317.1;Name=CAL95317.1;Note=Putative CDP-glycerol:glycerophosphate glycerophosphotransferase tarF (EC 2.7.8.-). Catalyzes the addition of a second single glycerol-P residue to the prenolpyrophosphate-linked dissacharide to complete the linkage unit (Potential). PurN: phosphoribosylglycinamide formy%3B~Family membership;gbkey=CDS;product=hypothetical protein%2C similar to teichoic acid biosynthesis protein B;protein_id=CAL95317.1;transl_table=11
AM406670.1	EMBL	gene	2980491	2984042	.	+	.	ID=gene2752;Name=azo2702;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2702
AM406670.1	EMBL	CDS	2980491	2984042	.	+	0	ID=cds2699;Parent=gene2752;Dbxref=EnsemblGenomes-Gn:azo2702,EnsemblGenomes-Tr:CAL95318,GOA:A1K913,InterPro:IPR029044,UniProtKB/TrEMBL:A1K913,NCBI_GP:CAL95318.1;Name=CAL95318.1;Note=InterPro: Glycosyl transferase family 2%3B~Family membership;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95318.1;transl_table=11
AM406670.1	EMBL	gene	2984043	2986367	.	-	.	ID=gene2753;Name=azo2703;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2703
AM406670.1	EMBL	CDS	2984043	2986367	.	-	0	ID=cds2700;Parent=gene2753;Dbxref=EnsemblGenomes-Gn:azo2703,EnsemblGenomes-Tr:CAL95319,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR013105,InterPro:IPR019734,InterPro:IPR029489,UniProtKB/TrEMBL:A1K914,NCBI_GP:CAL95319.1;Name=CAL95319.1;Note=Conserved hypothetical protein. Homology to magn028431 of M. magnetotacticum of 33%25 (ZP 00053827). Domain structur: 76 aa - 144 aa TPR%3B 201 aa - 316 aa TPR%3B 408 aa - 761 aa COG3914. InterPro: TPR repeat (IPR001440). no signal peptide no TMH.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95319.1;transl_table=11
AM406670.1	EMBL	gene	2986580	2988061	.	+	.	ID=gene2754;Name=fliC3;gbkey=Gene;gene=fliC3;gene_biotype=protein_coding;locus_tag=azo2704
AM406670.1	EMBL	CDS	2986580	2988061	.	+	0	ID=cds2701;Parent=gene2754;Dbxref=EnsemblGenomes-Gn:azo2704,EnsemblGenomes-Tr:CAL95320,GOA:A1K915,InterPro:IPR001029,InterPro:IPR001492,InterPro:IPR010810,UniProtKB/TrEMBL:A1K915,NCBI_GP:CAL95320.1;Name=CAL95320.1;Note=Flagellin. Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. InterPro: Flagellin N-terminus%2C Flagellin C-terminus Pfam: Bacterial flagellin N-terminus%2C bacterial flagellin C-terminus no TMH no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=fliC3;product=flagellin;protein_id=CAL95320.1;transl_table=11
AM406670.1	EMBL	gene	2988140	2988544	.	+	.	ID=gene2755;Name=flaG;gbkey=Gene;gene=flaG;gene_biotype=protein_coding;locus_tag=azo2705
AM406670.1	EMBL	CDS	2988140	2988544	.	+	0	ID=cds2702;Parent=gene2755;Dbxref=EnsemblGenomes-Gn:azo2705,EnsemblGenomes-Tr:CAL95321,InterPro:IPR005186,UniProtKB/TrEMBL:A1K916,NCBI_GP:CAL95321.1;Name=CAL95321.1;Note=Protein flaG. Although these proteins are known to be important for flagellar their exact function is unknown TREMBL:Q82UA2: 56%25 identity%2C 79%25 similarity. InterPro:IPR005186%3B FlaG. Pfam:PF03646%3B FlaG L12: ribosomal protein L7/L12 Nonsecretory protein with low signal peptide probability (0.041): SignalP predicted Transmembrane helices 0%3B~High confidence in function and specificity;gbkey=CDS;gene=flaG;product=probable flagellar protein;protein_id=CAL95321.1;transl_table=11
AM406670.1	EMBL	gene	2988571	2989992	.	+	.	ID=gene2756;Name=fliD;gbkey=Gene;gene=fliD;gene_biotype=protein_coding;locus_tag=azo2706
AM406670.1	EMBL	CDS	2988571	2989992	.	+	0	ID=cds2703;Parent=gene2756;Dbxref=EnsemblGenomes-Gn:azo2706,EnsemblGenomes-Tr:CAL95322,GOA:A1K917,InterPro:IPR003481,InterPro:IPR010809,UniProtKB/TrEMBL:A1K917,NCBI_GP:CAL95322.1;Name=CAL95322.1;Note=Flagellar hook-associated protein 2 (HAP2) (Filament cap protein) (Flagellar cap protein). The flagellar hook-associated protein 2 (AHP2 or FilD) is a capping protein for the flagella and forms the distal end of the flagella. The protein plays a role in mucin specific adhesion of the bacteria. InterPro: Flagellar hook-associated protein 2 no signal-peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fliD;product=flagellar hook-associated protein;protein_id=CAL95322.1;transl_table=11
AM406670.1	EMBL	gene	2990004	2990414	.	+	.	ID=gene2757;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=azo2707
AM406670.1	EMBL	CDS	2990004	2990414	.	+	0	ID=cds2704;Parent=gene2757;Dbxref=EnsemblGenomes-Gn:azo2707,EnsemblGenomes-Tr:CAL95323,GOA:A1K918,InterPro:IPR003713,UniProtKB/TrEMBL:A1K918,NCBI_GP:CAL95323.1;Name=CAL95323.1;Note=Flagellar protein fliS. The function of this protein in flagellar biosynthesis is unknown%2C but appears to be regulatory. Might be a chaperon for Flic. InterPro: Flagellar protein FliS fliS: flagellar protein FliS Pfam: Flagellar protein FliS no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=fliS;product=flagellar protein FliS;protein_id=CAL95323.1;transl_table=11
AM406670.1	EMBL	gene	2990427	2990744	.	+	.	ID=gene2758;Name=fliT;gbkey=Gene;gene=fliT;gene_biotype=protein_coding;locus_tag=azo2708
AM406670.1	EMBL	CDS	2990427	2990744	.	+	0	ID=cds2705;Parent=gene2758;Dbxref=EnsemblGenomes-Gn:azo2708,EnsemblGenomes-Tr:CAL95324,InterPro:IPR008622,UniProtKB/TrEMBL:A1K919,NCBI_GP:CAL95324.1;Name=CAL95324.1;Note=Hypothetical lagellar related protein FliT. Homology to fliT of R. solanacearum of 27%25 (trembl|Q8XST2). no domains predicted. no signal peptide. no TMHs.;gbkey=CDS;gene=fliT;product=hypothetical flagellar related protein FliT;protein_id=CAL95324.1;transl_table=11
AM406670.1	EMBL	gene	2990776	2991891	.	+	.	ID=gene2759;Name=azo2709;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2709
AM406670.1	EMBL	CDS	2990776	2991891	.	+	0	ID=cds2706;Parent=gene2759;Dbxref=EnsemblGenomes-Gn:azo2709,EnsemblGenomes-Tr:CAL95325,InterPro:IPR021136,UniProtKB/TrEMBL:A1K920,NCBI_GP:CAL95325.1;Name=CAL95325.1;Note=Hypothetical protein%2C42%25 similarity with TrEMBL%3BQ82T52. No Signal Peptide or TMH reported present.%3B~Family membership;gbkey=CDS;product=hypothetical protein;protein_id=CAL95325.1;transl_table=11
AM406670.1	EMBL	gene	2991881	2992258	.	+	.	ID=gene2760;Name=azo2710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2710
AM406670.1	EMBL	CDS	2991881	2992258	.	+	0	ID=cds2707;Parent=gene2760;Dbxref=EnsemblGenomes-Gn:azo2710,EnsemblGenomes-Tr:CAL95326,GOA:A1K921,InterPro:IPR006135,InterPro:IPR029025,UniProtKB/TrEMBL:A1K921,NCBI_GP:CAL95326.1;Name=CAL95326.1;Note=Conserved hypothetical flagellar related protein. Homology to NE2078 of Nitrosomonas europaea of 48%25 (CAD85989). Tirgfam: flhB_rel(TIGR). This group describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs%2C the members of this family form a monophyletic set. No TMHs. No signal peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical flagellar related protein;protein_id=CAL95326.1;transl_table=11
AM406670.1	EMBL	gene	2992357	2993136	.	+	.	ID=gene2761;Name=azo2711;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2711
AM406670.1	EMBL	CDS	2992357	2993136	.	+	0	ID=cds2708;Parent=gene2761;Dbxref=EnsemblGenomes-Gn:azo2711,EnsemblGenomes-Tr:CAL95327,GOA:A1K922,InterPro:IPR009875,InterPro:IPR009926,InterPro:IPR012349,InterPro:IPR023787,NCBI_GP:CAL95327.1;Name=CAL95327.1;Note=Conserved hypothetical protein%2C55%25 similarity to TrEMBL%3BQ82T50. Has IPR009926%3BPF07317:YcgR protein%3BThis family consists of several hypothetical YcgR proteins. YcgR may be involved in the flagellar motor function and may be a new member of the flagellar regulon. No signal peptide or TMH reported present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95327.1;transl_table=11
AM406670.1	EMBL	gene	2993380	2997147	.	+	.	ID=gene2762;Name=azo2712;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2712
AM406670.1	EMBL	CDS	2993380	2997147	.	+	0	ID=cds2709;Parent=gene2762;Dbxref=EnsemblGenomes-Gn:azo2712,EnsemblGenomes-Tr:CAL95328,GOA:A1K923,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003018,InterPro:IPR007895,InterPro:IPR013656,InterPro:IPR029016,InterPro:IPR029787,UniProtKB/TrEMBL:A1K923,NCBI_GP:CAL95328.1;Name=CAL95328.1;Note=GGDEF/PAS/PAC-domain containing protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=GGDEF/PAS/PAC-domain containing protein;protein_id=CAL95328.1;transl_table=11
AM406670.1	EMBL	gene	2997226	2997522	.	-	.	ID=gene2763;Name=azo2713;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2713
AM406670.1	EMBL	CDS	2997226	2997522	.	-	0	ID=cds2710;Parent=gene2763;Dbxref=EnsemblGenomes-Gn:azo2713,EnsemblGenomes-Tr:CAL95329,GOA:A1K924,InterPro:IPR001624,UniProtKB/TrEMBL:A1K924,NCBI_GP:CAL95329.1;Name=CAL95329.1;Note=Region start changed from 2997519 to 2997495 (-24 bases);gbkey=CDS;product=flagellar hook-basal body complex protein FliE;protein_id=CAL95329.1;transl_table=11
AM406670.1	EMBL	gene	2997698	2999176	.	-	.	ID=gene2764;Name=fleR;gbkey=Gene;gene=fleR;gene_biotype=protein_coding;locus_tag=azo2714
AM406670.1	EMBL	CDS	2997698	2999176	.	-	0	ID=cds2711;Parent=gene2764;Dbxref=EnsemblGenomes-Gn:azo2714,EnsemblGenomes-Tr:CAL95330,GOA:A1K925,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR025662,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K925,NCBI_GP:CAL95330.1;Name=CAL95330.1;Note=Sigma-54 dependent response regulator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=fleR;product=sigma-54 dependent response regulator;protein_id=CAL95330.1;transl_table=11
AM406670.1	EMBL	gene	2999173	3000354	.	-	.	ID=gene2765;Name=fleS;gbkey=Gene;gene=fleS;gene_biotype=protein_coding;locus_tag=azo2715
AM406670.1	EMBL	CDS	2999173	3000354	.	-	0	ID=cds2712;Parent=gene2765;Dbxref=EnsemblGenomes-Gn:azo2715,EnsemblGenomes-Tr:CAL95331,GOA:A1K926,InterPro:IPR000014,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1K926,NCBI_GP:CAL95331.1;Name=CAL95331.1;Note=Putative sensory box sensor histidine kinase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=fleS;product=putative sensory box sensor histidine kinase;protein_id=CAL95331.1;transl_table=11
AM406670.1	EMBL	gene	3000514	3002202	.	+	.	ID=gene2766;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=protein_coding;locus_tag=azo2716
AM406670.1	EMBL	CDS	3000514	3002202	.	+	0	ID=cds2713;Parent=gene2766;Dbxref=EnsemblGenomes-Gn:azo2716,EnsemblGenomes-Tr:CAL95332,GOA:A1K927,InterPro:IPR000067,InterPro:IPR006182,InterPro:IPR013556,UniProtKB/TrEMBL:A1K927,NCBI_GP:CAL95332.1;Name=CAL95332.1;Note=Flagellar M-ring protein. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L%2CP%2CS%2C and M) mounted on a central rod. The M ring is integral to the inner membrane of the cell and may be connected to the flagellar rod via the S ring. It MAY BE ACTIVELY INVOLVED IN ENERGY TRANSDUCTION. The S (supramembrane ring) lies just distal to the M ring. The L and P rings lie in the outer membrane and the periplasmic space%2C respectively. InterPro: Secretory protein of YscJ/FliF family fliF: flagellar M-ring protein FliF Pfam: Secretory protein of YscJ/FliF family no signal peptide probable 2 TMHs (other FilF have no predictions of TMHs)%3B~High confidence in function and specificity;gbkey=CDS;gene=fliF;product=flagellar M-ring protein;protein_id=CAL95332.1;transl_table=11
AM406670.1	EMBL	gene	3002199	3003197	.	+	.	ID=gene2767;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=azo2717
AM406670.1	EMBL	CDS	3002199	3003197	.	+	0	ID=cds2714;Parent=gene2767;Dbxref=EnsemblGenomes-Gn:azo2717,EnsemblGenomes-Tr:CAL95333,GOA:A1K928,InterPro:IPR000090,InterPro:IPR011002,InterPro:IPR028263,UniProtKB/TrEMBL:A1K928,NCBI_GP:CAL95333.1;Name=CAL95333.1;Note=Flagellar motor switch protein fliG. FLIG IS ONE OF THREE PROTEINS (FLIG FLIN FLIM) THAT FORM A SWITCH COMPLEX THAT IS PROPOSED TO BE LOCATED AT THE BASE OF THE BASAL BODY. THIS COMPLEX INTERACTS WITH THE CHEY AND CHEZ CHEMOTAXIS PROTEINS IN ADDITION TO CONTACTING COMPONENTS OF THE MOTOR THAT DETERMINE THE DIRECTION OF FLAGELLAR ROTATION (BY SIMILARITY). fliG: flagellar motor switch protein Pfam: fliG C-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fliG;product=flagellar motor switch protein FliG;protein_id=CAL95333.1;transl_table=11
AM406670.1	EMBL	gene	3003231	3003977	.	+	.	ID=gene2768;Name=fliH;gbkey=Gene;gene=fliH;gene_biotype=protein_coding;locus_tag=azo2718
AM406670.1	EMBL	CDS	3003231	3003977	.	+	0	ID=cds2715;Parent=gene2768;Dbxref=EnsemblGenomes-Gn:azo2718,EnsemblGenomes-Tr:CAL95334,GOA:A1K929,InterPro:IPR000563,InterPro:IPR018035,UniProtKB/TrEMBL:A1K929,NCBI_GP:CAL95334.1;Name=CAL95334.1;Note=Probable Flagellar assembly protein FliH%2C 38%25 identity to TrEMBL%3BQ7VYE7%2C Q7WJB3%2C Q8XSS5. Has PF02108%2CFlagellar assembly protein FliH%3BIPR000563%2C Flag_FliH%3B Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process%2C by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that%2C while most mutants were able to regrow filaments%2C flhA%2C fliH%2C fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25%2C782 Da.;gbkey=CDS;gene=fliH;product=flagellar assembly protein FliH;protein_id=CAL95334.1;transl_table=11
AM406670.1	EMBL	gene	3003991	3005397	.	+	.	ID=gene2769;Name=fliI;gbkey=Gene;gene=fliI;gene_biotype=protein_coding;locus_tag=azo2719
AM406670.1	EMBL	CDS	3003991	3005397	.	+	0	ID=cds2716;Parent=gene2769;Dbxref=EnsemblGenomes-Gn:azo2719,EnsemblGenomes-Tr:CAL95335,GOA:A1K930,InterPro:IPR000194,InterPro:IPR003593,InterPro:IPR005714,InterPro:IPR020003,InterPro:IPR020005,InterPro:IPR027417,UniProtKB/TrEMBL:A1K930,NCBI_GP:CAL95335.1;Name=CAL95335.1;Note=ATP synthase (EC 3.6.3.14). Probable catalytic subunit of a protein translocase for flagellum-specific export or a proton translocase involved in local circuits at the flagellum. May be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. InterPro: ATP synthase alpha and beta subunit central region Pfam: ATP synthase alpha/beta family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fliI;product=ATP synthase;protein_id=CAL95335.1;transl_table=11
AM406670.1	EMBL	gene	3005493	3005945	.	+	.	ID=gene2770;Name=fliJ;gbkey=Gene;gene=fliJ;gene_biotype=protein_coding;locus_tag=azo2720
AM406670.1	EMBL	CDS	3005493	3005945	.	+	0	ID=cds2717;Parent=gene2770;Dbxref=EnsemblGenomes-Gn:azo2720,EnsemblGenomes-Tr:CAL95336,GOA:A1K931,InterPro:IPR012823,InterPro:IPR018006,UniProtKB/TrEMBL:A1K931,NCBI_GP:CAL95336.1;Name=CAL95336.1;Note=Flagellar fliJ protein. FLAGELLAR PROTEIN THAT AFFECTS CHEMOTACTIC EVENTS. Might have a chaperon-like activity InterPro: Flagellar FliJ protein no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=fliJ;product=putative flagellar protein FliJ;protein_id=CAL95336.1;transl_table=11
AM406670.1	EMBL	gene	3006109	3007209	.	+	.	ID=gene2771;Name=fliK;gbkey=Gene;gene=fliK;gene_biotype=protein_coding;locus_tag=azo2721
AM406670.1	EMBL	CDS	3006109	3007209	.	+	0	ID=cds2718;Parent=gene2771;Dbxref=EnsemblGenomes-Gn:azo2721,EnsemblGenomes-Tr:CAL95337,InterPro:IPR021136,UniProtKB/TrEMBL:A1K932,NCBI_GP:CAL95337.1;Name=CAL95337.1;Note=Flagellar hook-length control protein. Controls the length of the flagellar hook. no TMHs no signal peptide%3B~Family membership;gbkey=CDS;gene=fliK;product=putative flagellar hook-length control protein FliK;protein_id=CAL95337.1;transl_table=11
AM406670.1	EMBL	gene	3007300	3007881	.	+	.	ID=gene2772;Name=fliL;gbkey=Gene;gene=fliL;gene_biotype=protein_coding;locus_tag=azo2722
AM406670.1	EMBL	CDS	3007300	3007881	.	+	0	ID=cds2719;Parent=gene2772;Dbxref=EnsemblGenomes-Gn:azo2722,EnsemblGenomes-Tr:CAL95338,GOA:A1K933,InterPro:IPR005503,UniProtKB/TrEMBL:A1K933,NCBI_GP:CAL95338.1;Name=CAL95338.1;Note=putative flagellar basal body-associated protein FliL Controls the rotational direction of flagella during chemotaxis. no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=fliL;product=putative flagellar basal body-associated protein FliL;protein_id=CAL95338.1;transl_table=11
AM406670.1	EMBL	gene	3007896	3008906	.	+	.	ID=gene2773;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=azo2723
AM406670.1	EMBL	CDS	3007896	3008906	.	+	0	ID=cds2720;Parent=gene2773;Dbxref=EnsemblGenomes-Gn:azo2723,EnsemblGenomes-Tr:CAL95339,GOA:A1K934,InterPro:IPR001543,InterPro:IPR001689,InterPro:IPR028976,UniProtKB/TrEMBL:A1K934,NCBI_GP:CAL95339.1;Name=CAL95339.1;Note=Flagellar motor switch protein fliM. FLIM IS ONE OF THREE PROTEINS (FLIG FLIN FLIM) THAT FORM A SWITCH COMPLEX THAT IS PROPOSED TO BE LOCATED AT THE BASE OF THE BASAL BODY. THIS COMPLEX INTERACTS WITH THE CHEY AND CHEZ CHEMOTAXIS PROTEINS IN ADDITION TO CONTACTING COMPONENTS OF THE MOTOR THAT DETERMINE THE DIRECTION OF FLAGELLAR ROTATION. InterPro: Flagellar motor switch protein FliM Pfam:Flagellar motor switch protein FliM no TMHs signale peptide: no analysis%3B~High confidence in function and specificity;gbkey=CDS;gene=fliM;product=flagellar motor switch protein FliM;protein_id=CAL95339.1;transl_table=11
AM406670.1	EMBL	gene	3008899	3009378	.	+	.	ID=gene2774;Name=fliN;gbkey=Gene;gene=fliN;gene_biotype=protein_coding;locus_tag=azo2724
AM406670.1	EMBL	CDS	3008899	3009378	.	+	0	ID=cds2721;Parent=gene2774;Dbxref=EnsemblGenomes-Gn:azo2724,EnsemblGenomes-Tr:CAL95340,GOA:A1K935,InterPro:IPR001172,InterPro:IPR001543,InterPro:IPR012826,InterPro:IPR018247,UniProtKB/TrEMBL:A1K935,NCBI_GP:CAL95340.1;Name=CAL95340.1;Note=Flagellar motor switch protein fliN (Flagellar motor switch protein mopA) (Fragment). FliN is one of three proteins (FliG FliN FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins in addition to contacting components of the motor that determine the dirction of flagellar rotation (by similarity). InterPro: Surface presentation of antigens (SPOA) protein%2C Flagellar motor switch FliN protein Pfam: Surface presentation of antigens (SPOA) protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fliN;product=flagellar motor switch FliN;protein_id=CAL95340.1;transl_table=11
AM406670.1	EMBL	gene	3009540	3009863	.	+	.	ID=gene2775;Name=fliO;gbkey=Gene;gene=fliO;gene_biotype=protein_coding;locus_tag=azo2725
AM406670.1	EMBL	CDS	3009540	3009863	.	+	0	ID=cds2722;Parent=gene2775;Dbxref=EnsemblGenomes-Gn:azo2725,EnsemblGenomes-Tr:CAL95341,GOA:A1K936,InterPro:IPR022781,UniProtKB/TrEMBL:A1K936,NCBI_GP:CAL95341.1;Name=CAL95341.1;Note=Flagellar biosynthesis protein%2CFliO%2C 26%25 identity to TrEMBL%3BQ8XBA2%2C Q83ML3. SProt%3BP22586 Has Signal peptide. Has PF04347%2C Flagellar biosynthesis protein%2CFliO%3BIPR007442 %3B FliO is an essential component of the flagellum-specific protein export apparatus. It is an integral membrane protein. Its precise molecular function is unknown.;gbkey=CDS;gene=fliO;product=flagellar biosynthesis protein%2C FliO;protein_id=CAL95341.1;transl_table=11
AM406670.1	EMBL	gene	3009853	3010629	.	+	.	ID=gene2776;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=azo2726
AM406670.1	EMBL	CDS	3009853	3010629	.	+	0	ID=cds2723;Parent=gene2776;Dbxref=EnsemblGenomes-Gn:azo2726,EnsemblGenomes-Tr:CAL95342,GOA:A1K937,InterPro:IPR005837,InterPro:IPR005838,UniProtKB/TrEMBL:A1K937,NCBI_GP:CAL95342.1;Name=CAL95342.1;Note=Flagellar biosynthetic protein fliP. Plays a role in the flagellum-specific transport system (By similarity). InterPro: Flagella transport protein FliP family araaP: aromatic amino acid transport pr%3B~High confidence in function and specificity;gbkey=CDS;gene=fliP;product=flagellar biosynthetic protein FliP;protein_id=CAL95342.1;transl_table=11
AM406670.1	EMBL	gene	3010643	3010912	.	+	.	ID=gene2777;Name=fliQ;gbkey=Gene;gene=fliQ;gene_biotype=protein_coding;locus_tag=azo2727
AM406670.1	EMBL	CDS	3010643	3010912	.	+	0	ID=cds2724;Parent=gene2777;Dbxref=EnsemblGenomes-Gn:azo2727,EnsemblGenomes-Tr:CAL95343,GOA:A1K938,InterPro:IPR002191,InterPro:IPR006305,UniProtKB/TrEMBL:A1K938,NCBI_GP:CAL95343.1;Name=CAL95343.1;Note=Flagellar biosynthesis protein fliQ. The fliQ gene product%2C a small integral membrane protein that contains two putative transmembrane (TM) regions%2C is required for the assembly of the rivet at the earliest stage of flagellar biosynthesis. Role in flagellar biosynthesis (By similarity). Pfam: Bacterial export proteins%2C family 3 no signal peptide most probable 2 TMHs%3B~Function unclear;gbkey=CDS;gene=fliQ;product=flagellar biosynthesis protein FliQ;protein_id=CAL95343.1;transl_table=11
AM406670.1	EMBL	gene	3010935	3011747	.	+	.	ID=gene2778;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;locus_tag=azo2728
AM406670.1	EMBL	CDS	3010935	3011747	.	+	0	ID=cds2725;Parent=gene2778;Dbxref=EnsemblGenomes-Gn:azo2728,EnsemblGenomes-Tr:CAL95344,GOA:A1K939,InterPro:IPR002010,InterPro:IPR006303,UniProtKB/TrEMBL:A1K939,NCBI_GP:CAL95344.1;Name=CAL95344.1;Note=Flagellar biosynthesis protein fliR. Role in flagellar biosynthesis. InterPro: Bacterial export protein family 1 PFam: Bacterial export proteins%2C family 1 no signal peptide most probable 8 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fliR;product=flagellar biosynthesis protein FliR;protein_id=CAL95344.1;transl_table=11
AM406670.1	EMBL	gene	3011751	3012236	.	-	.	ID=gene2779;Name=azo2729;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2729
AM406670.1	EMBL	CDS	3011751	3012236	.	-	0	ID=cds2726;Parent=gene2779;Dbxref=EnsemblGenomes-Gn:azo2729,EnsemblGenomes-Tr:CAL95345,UniProtKB/TrEMBL:A1K940,NCBI_GP:CAL95345.1;Name=CAL95345.1;Note=Hypothetical secreted protein. no homology to the data bank. no domains predicted signal peptide no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95345.1;transl_table=11
AM406670.1	EMBL	gene	3012247	3013509	.	-	.	ID=gene2780;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=azo2730
AM406670.1	EMBL	CDS	3012247	3013509	.	-	0	ID=cds2727;Parent=gene2780;Dbxref=EnsemblGenomes-Gn:azo2730,EnsemblGenomes-Tr:CAL95346,GOA:A1K941,InterPro:IPR001029,InterPro:IPR013384,UniProtKB/TrEMBL:A1K941,NCBI_GP:CAL95346.1;Name=CAL95346.1;Note=Flagellar hook-associated protein 3 (HAP3) (Hook-filament junction protein). no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=flgL;product=flagellar hook-filament junction protein 3;protein_id=CAL95346.1;transl_table=11
AM406670.1	EMBL	gene	3013521	3015512	.	-	.	ID=gene2781;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=azo2731
AM406670.1	EMBL	CDS	3013521	3015512	.	-	0	ID=cds2728;Parent=gene2781;Dbxref=EnsemblGenomes-Gn:azo2731,EnsemblGenomes-Tr:CAL95347,GOA:A1K942,InterPro:IPR002371,InterPro:IPR010930,UniProtKB/TrEMBL:A1K942,NCBI_GP:CAL95347.1;Name=CAL95347.1;Note=flagellar hook-filament junction protein 1 (HAP1). no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=flgK;product=flagellar hook-filament junction protein 1;protein_id=CAL95347.1;transl_table=11
AM406670.1	EMBL	gene	3015668	3016735	.	-	.	ID=gene2782;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=azo2732
AM406670.1	EMBL	CDS	3015668	3016735	.	-	0	ID=cds2729;Parent=gene2782;Dbxref=EnsemblGenomes-Gn:azo2732,EnsemblGenomes-Tr:CAL95348,GOA:A1K943,InterPro:IPR002901,InterPro:IPR013377,InterPro:IPR019301,InterPro:IPR023346,UniProtKB/TrEMBL:A1K943,NCBI_GP:CAL95348.1;Name=CAL95348.1;Note=Peptidoglycan hydrolase flgJ (EC 3.2.1.-) (Muramidase flgJ). Flagellum-specific muramidase which hydrolyses the peptidoglycan layer to assemble the rod structure in the periplasmic space (by similarity). InterPro: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidases Pfam: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidases no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=flgJ;product=peptidoglycan hydrolase;protein_id=CAL95348.1;transl_table=11
AM406670.1	EMBL	gene	3016818	3017930	.	-	.	ID=gene2783;Name=flgI;gbkey=Gene;gene=flgI;gene_biotype=protein_coding;locus_tag=azo2733
AM406670.1	EMBL	CDS	3016818	3017930	.	-	0	ID=cds2730;Parent=gene2783;Dbxref=EnsemblGenomes-Gn:azo2733,EnsemblGenomes-Tr:CAL95349,GOA:A1K944,InterPro:IPR001782,UniProtKB/TrEMBL:A1K944,NCBI_GP:CAL95349.1;Name=CAL95349.1;Note=Flagellar P-ring protein precursor (Basal body P-ring protein). FlgH and FlgI%2C which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space%2C have typical N-terminal cleaved signal-peptide sequences. FlgH is predicted to have an extensive beta-sheet structure%2C in keeping with other outer membrane proteins%2C and FlgI is thought to have even more beta-structure content [1]. InterPro: Flagellar P-ring protein Pfam: Flagellar P-ring protein signal peptide probable 1 TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=flgI;product=flagellar P-ring protein precursor;protein_id=CAL95349.1;transl_table=11
AM406670.1	EMBL	gene	3017950	3018627	.	-	.	ID=gene2784;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=azo2734
AM406670.1	EMBL	CDS	3017950	3018627	.	-	0	ID=cds2731;Parent=gene2784;Dbxref=EnsemblGenomes-Gn:azo2734,EnsemblGenomes-Tr:CAL95350,GOA:A1K945,InterPro:IPR000527,NCBI_GP:CAL95350.1;Name=CAL95350.1;Note=Flagellar L-ring protein precursor (Basal body L-ring protein). Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. The L ring reside in the outer membrane. FlgH%2C which is exported across the cell membrane to their destinations in the outer membrane%2C has a typical N-terminal cleaved signal-peptide sequences and is predicted to have an extensive -sheet structure%2C in keeping with other outer membrane proteins. Pfam: Flagellar L-ring protein signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=flgH;product=flagellar L-ring protein precursor;protein_id=CAL95350.1;transl_table=11
AM406670.1	EMBL	gene	3018650	3019432	.	-	.	ID=gene2785;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=azo2735
AM406670.1	EMBL	CDS	3018650	3019432	.	-	0	ID=cds2732;Parent=gene2785;Dbxref=EnsemblGenomes-Gn:azo2735,EnsemblGenomes-Tr:CAL95351,GOA:A1K946,InterPro:IPR001444,InterPro:IPR010930,InterPro:IPR012834,InterPro:IPR019776,InterPro:IPR020013,UniProtKB/TrEMBL:A1K946,NCBI_GP:CAL95351.1;Name=CAL95351.1;Note=Flagellar basal-body rod protein flgG (Distal rod protein). The rod has been shown to consist of four different%2C yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB%2C flgC%2C and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. InterPro: Flagella basal body rod protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=flgG;product=flagellar basal-body rod protein FlgG;protein_id=CAL95351.1;transl_table=11
AM406670.1	EMBL	gene	3019571	3020308	.	-	.	ID=gene2786;Name=flgF;gbkey=Gene;gene=flgF;gene_biotype=protein_coding;locus_tag=azo2736
AM406670.1	EMBL	CDS	3019571	3020308	.	-	0	ID=cds2733;Parent=gene2786;Dbxref=EnsemblGenomes-Gn:azo2736,EnsemblGenomes-Tr:CAL95352,GOA:A1K947,InterPro:IPR010930,InterPro:IPR012836,InterPro:IPR020013,UniProtKB/TrEMBL:A1K947,NCBI_GP:CAL95352.1;Name=CAL95352.1;Note=Flagellar basal-body rod protein flgF (Putative proximal rod protein). The rod has been shown to consist of four different%2C yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB%2C flgC%2C and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. InterPro: Flagella basal body rod protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=flgF;product=flagellar basal-body rod protein FlgF;protein_id=CAL95352.1;transl_table=11
AM406670.1	EMBL	gene	3020334	3021671	.	-	.	ID=gene2787;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=azo2737
AM406670.1	EMBL	CDS	3020334	3021671	.	-	0	ID=cds2734;Parent=gene2787;Dbxref=EnsemblGenomes-Gn:azo2737,EnsemblGenomes-Tr:CAL95353,GOA:A1K948,InterPro:IPR001444,InterPro:IPR010930,InterPro:IPR011491,InterPro:IPR019776,InterPro:IPR020013,UniProtKB/TrEMBL:A1K948,NCBI_GP:CAL95353.1;Name=CAL95353.1;Note=Flagellar hook protein flgE. InterPro: Flagella basal body rod protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=flgE;product=FlgE protein;protein_id=CAL95353.1;transl_table=11
AM406670.1	EMBL	gene	3021687	3022361	.	-	.	ID=gene2788;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=azo2738
AM406670.1	EMBL	CDS	3021687	3022361	.	-	0	ID=cds2735;Parent=gene2788;Dbxref=EnsemblGenomes-Gn:azo2738,EnsemblGenomes-Tr:CAL95354,InterPro:IPR005648,InterPro:IPR025963,InterPro:IPR025965,UniProtKB/TrEMBL:A1K949,NCBI_GP:CAL95354.1;Name=CAL95354.1;Note=Basal-body rod modification protein flgD. FlgD is known to be absolutely required for hook assembly%2C yet it has not been detected in the mature flagellum. It appears to act as a hook-capping protein to enable assembly of hook protein subunits. no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=flgD;product=probable basal-body rod modification protein FlgD;protein_id=CAL95354.1;transl_table=11
AM406670.1	EMBL	gene	3022403	3022843	.	-	.	ID=gene2789;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;locus_tag=azo2739
AM406670.1	EMBL	CDS	3022403	3022843	.	-	0	ID=cds2736;Parent=gene2789;Dbxref=EnsemblGenomes-Gn:azo2739,EnsemblGenomes-Tr:CAL95355,GOA:A1K950,InterPro:IPR001444,InterPro:IPR006299,InterPro:IPR010930,InterPro:IPR019776,UniProtKB/TrEMBL:A1K950,NCBI_GP:CAL95355.1;Name=CAL95355.1;Note=Flagellar basal-body rod protein flgC. The rod has been shown to consist of four different%2C yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB%2C flgC%2C and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. InterPro: Flagella basal body rod protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=flgC;product=flagellar basal-body rod protein FlgC;protein_id=CAL95355.1;transl_table=11
AM406670.1	EMBL	gene	3022865	3023266	.	-	.	ID=gene2790;Name=flgB;gbkey=Gene;gene=flgB;gene_biotype=protein_coding;locus_tag=azo2740
AM406670.1	EMBL	CDS	3022865	3023266	.	-	0	ID=cds2737;Parent=gene2790;Dbxref=EnsemblGenomes-Gn:azo2740,EnsemblGenomes-Tr:CAL95356,GOA:A1K951,InterPro:IPR001444,InterPro:IPR006300,InterPro:IPR019776,UniProtKB/TrEMBL:A1K951,NCBI_GP:CAL95356.1;Name=CAL95356.1;Note=Flagellar basal-body rod protein flgB (Putative proximal rod protein). The rod has been shown to consist of four different%2C yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB%2C flgC%2C and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=flgB;product=flagellar basal-body rod protein FlgB;protein_id=CAL95356.1;transl_table=11
AM406670.1	EMBL	gene	3023519	3024289	.	+	.	ID=gene2791;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=azo2741
AM406670.1	EMBL	CDS	3023519	3024289	.	+	0	ID=cds2738;Parent=gene2791;Dbxref=EnsemblGenomes-Gn:azo2741,EnsemblGenomes-Tr:CAL95357,InterPro:IPR013974,InterPro:IPR017585,UniProtKB/TrEMBL:A1K952,NCBI_GP:CAL95357.1;Name=CAL95357.1;Note=Flagella basal body P-ring formation protein flgA precursor. Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a chaperon protein for the P-ring assembly (by similarity). signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=flgA;product=chaperon for flagellar basal body P-ring formation;protein_id=CAL95357.1;transl_table=11
AM406670.1	EMBL	gene	3024385	3024681	.	+	.	ID=gene2792;Name=azo2742;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2742
AM406670.1	EMBL	CDS	3024385	3024681	.	+	0	ID=cds2739;Parent=gene2792;Dbxref=EnsemblGenomes-Gn:azo2742,EnsemblGenomes-Tr:CAL95358,GOA:A1K953,InterPro:IPR007412,UniProtKB/TrEMBL:A1K953,NCBI_GP:CAL95358.1;Name=CAL95358.1;Note=Region start changed from 3024385 to 3024358 (27 bases);gbkey=CDS;product=putative negative regulator of flagellin synthesis FlgM;protein_id=CAL95358.1;transl_table=11
AM406670.1	EMBL	gene	3024695	3025174	.	+	.	ID=gene2793;Name=flgN;gbkey=Gene;gene=flgN;gene_biotype=protein_coding;locus_tag=azo2743
AM406670.1	EMBL	CDS	3024695	3025174	.	+	0	ID=cds2740;Parent=gene2793;Dbxref=EnsemblGenomes-Gn:azo2743,EnsemblGenomes-Tr:CAL95359,GOA:A1K954,InterPro:IPR007809,UniProtKB/TrEMBL:A1K954,NCBI_GP:CAL95359.1;Name=CAL95359.1;Note=Putative chaperon of flagella synthesis. FlgN is an export chaperon of FlgM and FlgK involved in flagellar synthesis. no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=flgN;product=putative chaperon of flagellar synthesis;protein_id=CAL95359.1;transl_table=11
AM406670.1	EMBL	gene	3025253	3025792	.	-	.	ID=gene2794;Name=azo2744;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2744
AM406670.1	EMBL	CDS	3025253	3025792	.	-	0	ID=cds2741;Parent=gene2794;Dbxref=EnsemblGenomes-Gn:azo2744,EnsemblGenomes-Tr:CAL95360,GOA:A1K955,InterPro:IPR012899,UniProtKB/TrEMBL:A1K955,NCBI_GP:CAL95360.1;Name=CAL95360.1;Note=Hypothetical secreted protein. Homology to cv0285 of C. violaceum of 25%25 (trembl|Q7P1C8) no domains predicted signal peptide TMH in signal peptide;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95360.1;transl_table=11
AM406670.1	EMBL	gene	3025977	3026735	.	+	.	ID=gene2795;Name=ompR2;gbkey=Gene;gene=ompR2;gene_biotype=protein_coding;locus_tag=azo2745
AM406670.1	EMBL	CDS	3025977	3026735	.	+	0	ID=cds2742;Parent=gene2795;Dbxref=EnsemblGenomes-Gn:azo2745,EnsemblGenomes-Tr:CAL95361,GOA:A1K956,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K956,NCBI_GP:CAL95361.1;Name=CAL95361.1;Note=Probable DNA-binding response regulator%2C ITS CARBOXYL-TERMINAL MOIETY MEDIATES THE MULTIMERIZATION OF THE OMPR PROTEIN. AS A MULTIMER IT TURNS ON THE EXPRESSION OF THE OMPC GENE%3B AS A MONOMER IT TURNS ON THE EXPRESSION OF THE OMPF GENE.%3B~High confidence in function and specificity;gbkey=CDS;gene=ompR2;product=probable DNA-binding response regulator;protein_id=CAL95361.1;transl_table=11
AM406670.1	EMBL	gene	3026732	3028066	.	+	.	ID=gene2796;Name=envZ2;gbkey=Gene;gene=envZ2;gene_biotype=protein_coding;locus_tag=azo2746
AM406670.1	EMBL	CDS	3026732	3028066	.	+	0	ID=cds2743;Parent=gene2796;Dbxref=EnsemblGenomes-Gn:azo2746,EnsemblGenomes-Tr:CAL95362,GOA:A1K957,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1K957,NCBI_GP:CAL95362.1;Name=CAL95362.1;Note=Putative sensor histidine kinase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=envZ2;product=putative sensor histidine kinase;protein_id=CAL95362.1;transl_table=11
AM406670.1	EMBL	gene	3028173	3028706	.	-	.	ID=gene2797;Name=azo2747;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2747
AM406670.1	EMBL	CDS	3028173	3028706	.	-	0	ID=cds2744;Parent=gene2797;Dbxref=EnsemblGenomes-Gn:azo2747,EnsemblGenomes-Tr:CAL95363,UniProtKB/TrEMBL:A1K958,NCBI_GP:CAL95363.1;Name=CAL95363.1;Note=Conserved hypothetical protein. Homology to ebA6852 of Azoarcus sp. EbN1 of 47%25 (gnl|keqq|eba:ebA6852(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95363.1;transl_table=11
AM406670.1	EMBL	gene	3029233	3031296	.	+	.	ID=gene2798;Name=azo2748;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2748
AM406670.1	EMBL	CDS	3029233	3031296	.	+	0	ID=cds2745;Parent=gene2798;Dbxref=EnsemblGenomes-Gn:azo2748,EnsemblGenomes-Tr:CAL95364,GOA:A1K959,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003594,InterPro:IPR005467,InterPro:IPR011712,InterPro:IPR013655,InterPro:IPR013656,UniProtKB/TrEMBL:A1K959,NCBI_GP:CAL95364.1;Name=CAL95364.1;Note=Putative sensory box histidine kinase%2C very low similarity to TREMBL: trembl|Q9FD00 (12%25 Erwinia stewartii%2C HrpX) InterPro: IPR005467 His_kinase. IPR003661 His_kinA_N. IPR000014 PAS_domain. IPR001610 PAC Pfam: PF02518 HATPase_c. PF00989 PAS. PF00785 PAC. TIGRFAM:TIGR00229 PAS domain S-box.%3B~Function unclear;gbkey=CDS;product=putative sensory box histidine kinase;protein_id=CAL95364.1;transl_table=11
AM406670.1	EMBL	gene	3031290	3031919	.	+	.	ID=gene2799;Name=vsrD2;gbkey=Gene;gene=vsrD2;gene_biotype=protein_coding;locus_tag=azo2749
AM406670.1	EMBL	CDS	3031290	3031919	.	+	0	ID=cds2746;Parent=gene2799;Dbxref=EnsemblGenomes-Gn:azo2749,EnsemblGenomes-Tr:CAL95365,GOA:A1K960,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K960,NCBI_GP:CAL95365.1;Name=CAL95365.1;Note=Probable transcriptional regulator%2C LuxR family%2C%3B~Specificity unclear;gbkey=CDS;gene=vsrD2;product=probable transcriptional regulator%2C LuxR family;protein_id=CAL95365.1;transl_table=11
AM406670.1	EMBL	gene	3031885	3033474	.	-	.	ID=gene2800;Name=glpA;gbkey=Gene;gene=glpA;gene_biotype=protein_coding;locus_tag=azo2750
AM406670.1	EMBL	CDS	3031885	3033474	.	-	0	ID=cds2747;Parent=gene2800;Dbxref=EnsemblGenomes-Gn:azo2750,EnsemblGenomes-Tr:CAL95366,GOA:A1K961,InterPro:IPR000447,InterPro:IPR006076,UniProtKB/TrEMBL:A1K961,NCBI_GP:CAL95366.1;Name=CAL95366.1;Note=Putative glycerol-3-phosphate dehydrogenase. Homology to glpA of B. hermsir of 38%25 (trembl|Q84I21) FAD-dependent glycerol-3-phosphate dehydrogenase catalyzes the conversion of glycerol-3-phosphate into dihydroxyacetone phosphate: sn-glycerol-3-phosphate + acceptor %3D glycerone phosphate + reduced acceptor. InterPro: D-amino acid oxidase (IPR000927) Pfam: FAD dependent oxidoreductase no signal peptide no TMHs gidA: glucose-inhibited division prot%3B~Family membership;gbkey=CDS;gene=glpA;product=putative glycerol-3-phosphate dehydrogenase;protein_id=CAL95366.1;transl_table=11
AM406670.1	EMBL	gene	3033471	3034961	.	-	.	ID=gene2801;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=azo2751
AM406670.1	EMBL	CDS	3033471	3034961	.	-	0	ID=cds2748;Parent=gene2801;Dbxref=EnsemblGenomes-Gn:azo2751,EnsemblGenomes-Tr:CAL95367,GOA:A1K962,InterPro:IPR005999,InterPro:IPR018483,InterPro:IPR018484,InterPro:IPR018485,NCBI_GP:CAL95367.1;Name=CAL95367.1;Note=Probable glycerol kinase. Homology to glpK of T. aquaticus of 53%25 (sprot|GLPK_THEAQ). Key enzyme in the regulation of glycerol uptake and metabolism. InterPro: Carbohydrate kinase FGGY family (IPR000577) Pfam: FGGY family of carobhydrates kinases%2C N-terminus%3B FGGY family of carobhydrates kinases%2C C-terminus no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=glpK;product=probable glycerol kinase;protein_id=CAL95367.1;transl_table=11
AM406670.1	EMBL	gene	3035084	3035953	.	+	.	ID=gene2802;Name=azo2752;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2752
AM406670.1	EMBL	CDS	3035084	3035953	.	+	0	ID=cds2749;Parent=gene2802;Dbxref=EnsemblGenomes-Gn:azo2752,EnsemblGenomes-Tr:CAL95368,GOA:A1K963,InterPro:IPR000620,UniProtKB/TrEMBL:A1K963,NCBI_GP:CAL95368.1;Name=CAL95368.1;Note=Conserved hypothetical membrane protein. Homology with CV1535 of C. violaceum of 46%25. 2A78: Carboxylate/Amino Acid/Amine Tranporter. Pfam: Intergral membrane protein DUF6. probable 9 TMHs. signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95368.1;transl_table=11
AM406670.1	EMBL	gene	3036044	3036406	.	+	.	ID=gene2803;Name=azo2753;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2753
AM406670.1	EMBL	CDS	3036044	3036406	.	+	0	ID=cds2750;Parent=gene2803;Dbxref=EnsemblGenomes-Gn:azo2753,EnsemblGenomes-Tr:CAL95369,InterPro:IPR002645,InterPro:IPR021866,UniProtKB/TrEMBL:A1K964,NCBI_GP:CAL95369.1;Name=CAL95369.1;Note=Conserved hypothetical protein. Homology to NE1501 of N.europaea of 47%25 (trembl:Q82UI4). No domains predicted. Signal peptide present. No TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95369.1;transl_table=11
AM406670.1	EMBL	gene	3036403	3037257	.	+	.	ID=gene2804;Name=sseA;gbkey=Gene;gene=sseA;gene_biotype=protein_coding;locus_tag=azo2754
AM406670.1	EMBL	CDS	3036403	3037257	.	+	0	ID=cds2751;Parent=gene2804;Dbxref=EnsemblGenomes-Gn:azo2754,EnsemblGenomes-Tr:CAL95370,GOA:A1K965,InterPro:IPR001307,InterPro:IPR001763,UniProtKB/TrEMBL:A1K965,NCBI_GP:CAL95370.1;Name=CAL95370.1;Note=SseA: putative thiosulfate sulfurtransferase (rhodanese-like protein) [EC:2.8.1.1]. This protein transfers a sulfur ion to cyanide or to other thiol compounds. Also has weak rhodanese activity (130-fold lower). Its participation in detoxification of cyanide may be small. May be involved in the enhancement of serine sensitivity. Probable 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2) (Rhodanese- like protein) (MST). InterPro: Rhodanese/cdc25 fold%3B~High confidence in function and specificity;gbkey=CDS;gene=sseA;product=putative thiosulfate sulfurtransferase;protein_id=CAL95370.1;transl_table=11
AM406670.1	EMBL	gene	3037292	3038107	.	-	.	ID=gene2805;Name=murI;gbkey=Gene;gene=murI;gene_biotype=protein_coding;locus_tag=azo2755
AM406670.1	EMBL	CDS	3037292	3038107	.	-	0	ID=cds2752;Parent=gene2805;Dbxref=EnsemblGenomes-Gn:azo2755,EnsemblGenomes-Tr:CAL95371,GOA:A1K966,InterPro:IPR001920,InterPro:IPR004391,InterPro:IPR015942,InterPro:IPR018187,UniProtKB/TrEMBL:A1K966,NCBI_GP:CAL95371.1;Name=CAL95371.1;Note=Glutamate racemase (EC 5.1.1.3). Provides the (R)-glutamate required for cell wall biosynthesis (By similarity). InterPro: Glutamate racemase glut_race: glutamate racemase%3B~High confidence in function and specificity;gbkey=CDS;gene=murI;product=glutamate racemase;protein_id=CAL95371.1;transl_table=11
AM406670.1	EMBL	gene	3038104	3039303	.	-	.	ID=gene2806;Name=azo2756;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2756
AM406670.1	EMBL	CDS	3038104	3039303	.	-	0	ID=cds2753;Parent=gene2806;Dbxref=EnsemblGenomes-Gn:azo2756,EnsemblGenomes-Tr:CAL95372,GOA:A1K967,InterPro:IPR001412,InterPro:IPR002305,InterPro:IPR002307,InterPro:IPR002942,InterPro:IPR014729,InterPro:IPR024088,InterPro:IPR024108,UniProtKB/TrEMBL:A1K967,NCBI_GP:CAL95372.1;Name=CAL95372.1;Note=Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS). tyrS: tyrosyl-tRNA synthetase%3B~High confidence in function and specificity;gbkey=CDS;product=TyrS protein;protein_id=CAL95372.1;transl_table=11
AM406670.1	EMBL	gene	3039381	3040709	.	+	.	ID=gene2807;Name=azo2757;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2757
AM406670.1	EMBL	CDS	3039381	3040709	.	+	0	ID=cds2754;Parent=gene2807;Dbxref=EnsemblGenomes-Gn:azo2757,EnsemblGenomes-Tr:CAL95373,GOA:A1K968,InterPro:IPR011055,InterPro:IPR016047,UniProtKB/TrEMBL:A1K968,NCBI_GP:CAL95373.1;Name=CAL95373.1;Note=Hypothetical metalloprotease yebA precursor (EC 3.4.24.-).%3B~Specificity unclear;gbkey=CDS;product=metalloprotease precursor;protein_id=CAL95373.1;transl_table=11
AM406670.1	EMBL	gene	3040778	3041128	.	-	.	ID=gene2808;Name=azo2758;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2758
AM406670.1	EMBL	CDS	3040778	3041128	.	-	0	ID=cds2755;Parent=gene2808;Dbxref=EnsemblGenomes-Gn:azo2758,EnsemblGenomes-Tr:CAL95374,GOA:A1K969,InterPro:IPR000361,InterPro:IPR016092,InterPro:IPR017870,InterPro:IPR023063,NCBI_GP:CAL95374.1;Name=CAL95374.1;Note=Conserved hypothetical protein. Homology to ebB30 of Azoarcus sp. EbN1 of 88%25 (gnl|keqq|eba:ebB30(KEGG)). Has IPR000361%2C HesB_yadR_yfhF: HesB-like domain%2CPF01521%3B This family includes HesB which may be involved in nitrogen fixation%3B the hesB gene is expressed only under nitrogen fixation conditions. Other members of this family include various hypothetical proteins of which YHGI_ECOLI and Swiss:NP31774 also contains NifU-like domains NifU which is also involved in nitrogen fixation. In the gram-negative soil bacterium Rhizobium etli%2C the hesB-like gene iscN is required for nitrogen fixation. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95374.1;transl_table=11
AM406670.1	EMBL	gene	3041369	3041761	.	-	.	ID=gene2809;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=azo2759
AM406670.1	EMBL	CDS	3041369	3041761	.	-	0	ID=cds2756;Parent=gene2809;Dbxref=EnsemblGenomes-Gn:azo2759,EnsemblGenomes-Tr:CAL95375,GOA:A1K970,InterPro:IPR000754,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR020574,InterPro:IPR023035,NCBI_GP:CAL95375.1;Name=CAL95375.1;Note=30S ribosomal protein S9.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsI;product=30S ribosomal protein S9;protein_id=CAL95375.1;transl_table=11
AM406670.1	EMBL	gene	3041775	3042203	.	-	.	ID=gene2810;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=azo2760
AM406670.1	EMBL	CDS	3041775	3042203	.	-	0	ID=cds2757;Parent=gene2810;Dbxref=EnsemblGenomes-Gn:azo2760,EnsemblGenomes-Tr:CAL95376,GOA:A1K971,InterPro:IPR005822,InterPro:IPR005823,InterPro:IPR023564,NCBI_GP:CAL95376.1;Name=CAL95376.1;Note=50S ribosomal protein L13. THIS PROTEIN IS ONE OF THE EARLY ASSEMBLY PROTEINS OF THE 50S RIBOSOMAL SUBUNIT.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplM;product=50S ribosomal protein L13;protein_id=CAL95376.1;transl_table=11
AM406670.1	EMBL	gene	3042732	3043124	.	+	.	ID=gene2811;Name=azo2761;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2761
AM406670.1	EMBL	CDS	3042732	3043124	.	+	0	ID=cds2758;Parent=gene2811;Dbxref=EnsemblGenomes-Gn:azo2761,EnsemblGenomes-Tr:CAL95377,GOA:A1K972,InterPro:IPR003718,InterPro:IPR015946,UniProtKB/TrEMBL:A1K972,NCBI_GP:CAL95377.1;Name=CAL95377.1;Note=Conserved hypothetical protein. Homology to rsc0489 of R. solanacearum of 73%25 (trembl|Q8Y247). no signal peptide. no TMH. No domains predicted.%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95377.1;transl_table=11
AM406670.1	EMBL	gene	3043258	3043878	.	-	.	ID=gene2812;Name=azo2762;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2762
AM406670.1	EMBL	CDS	3043258	3043878	.	-	0	ID=cds2759;Parent=gene2812;Dbxref=EnsemblGenomes-Gn:azo2762,EnsemblGenomes-Tr:CAL95378,GOA:A1K973,InterPro:IPR009078,InterPro:IPR011566,InterPro:IPR012347,InterPro:IPR023782,NCBI_GP:CAL95378.1;Name=CAL95378.1;Note=Probable Ubiquinone biosynthesis protein COQ7 homolog (Coenzyme Q biosynthesis protein 7 homolog) (Timing protein clk-1 homolog) (Fragment).%3B~Function unclear;gbkey=CDS;product=ubiquinone biosynthesis protein;protein_id=CAL95378.1;transl_table=11
AM406670.1	EMBL	gene	3043881	3044411	.	-	.	ID=gene2813;Name=azo2763;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2763
AM406670.1	EMBL	CDS	3043881	3044411	.	-	0	ID=cds2760;Parent=gene2813;Dbxref=EnsemblGenomes-Gn:azo2763,EnsemblGenomes-Tr:CAL95379,InterPro:IPR014861,UniProtKB/TrEMBL:A1K974,NCBI_GP:CAL95379.1;Name=CAL95379.1;Note=Conserved hypothetical secreted protein. Homology to ebA945 of Azoarcus sp. EbN1 of 47%25 (gnl|keqq|eba:ebA945(KEGG)). No domains predicted. Signal P reporting signal peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95379.1;transl_table=11
AM406670.1	EMBL	gene	3044471	3044998	.	-	.	ID=gene2814;Name=azo2764;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2764
AM406670.1	EMBL	CDS	3044471	3044998	.	-	0	ID=cds2761;Parent=gene2814;Dbxref=EnsemblGenomes-Gn:azo2764,EnsemblGenomes-Tr:CAL95380,GOA:A1K975,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR020476,InterPro:IPR022927,NCBI_GP:CAL95380.1;Name=CAL95380.1;Note=Region start changed from 3044821 to 3044998 (177 bases);gbkey=CDS;product=probable (di)nucleoside polyphosphate hydrolase;protein_id=CAL95380.1;transl_table=11
AM406670.1	EMBL	gene	3045152	3046897	.	+	.	ID=gene2815;Name=azo2765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2765
AM406670.1	EMBL	CDS	3045152	3046897	.	+	0	ID=cds2762;Parent=gene2815;Dbxref=EnsemblGenomes-Gn:azo2765,EnsemblGenomes-Tr:CAL95381,GOA:A1K976,InterPro:IPR002314,InterPro:IPR002316,InterPro:IPR004154,InterPro:IPR004500,InterPro:IPR006195,InterPro:IPR007214,InterPro:IPR023717,NCBI_GP:CAL95381.1;Name=CAL95381.1;Note=Region start changed from 3044465 to 3045125 (-660 bases);gbkey=CDS;product=CAL95381.1;protein_id=CAL95381.1;transl_table=11
AM406670.1	EMBL	gene	3046921	3047592	.	+	.	ID=gene2816;Name=azo2766;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2766
AM406670.1	EMBL	CDS	3046921	3047592	.	+	0	ID=cds2763;Parent=gene2816;Dbxref=EnsemblGenomes-Gn:azo2766,EnsemblGenomes-Tr:CAL95382,GOA:A1K977,InterPro:IPR008258,InterPro:IPR023346,UniProtKB/TrEMBL:A1K977,NCBI_GP:CAL95382.1;Name=CAL95382.1;Note=Probable Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) (Murein hydrolase C).%3B~Function unclear;gbkey=CDS;product=soluble lytic murein transglycosylase precursor;protein_id=CAL95382.1;transl_table=11
AM406670.1	EMBL	gene	3047582	3048178	.	-	.	ID=gene2817;Name=azo2767;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2767
AM406670.1	EMBL	CDS	3047582	3048178	.	-	0	ID=cds2764;Parent=gene2817;Dbxref=EnsemblGenomes-Gn:azo2767,EnsemblGenomes-Tr:CAL95383,InterPro:IPR007607,UniProtKB/TrEMBL:A1K978,NCBI_GP:CAL95383.1;Name=CAL95383.1;Note=Conserved hypothetical protein. Homology to Daro03000304 of Dechloromonas aromatica of 54%25 (gi|46140561|ref|ZP_00152132.2|(NBCI ENTREZ)). Has PF04519%3B Protein of unknown function%2C DUF583:This family contains several uncharacterised hypothetical proteins. No Signal peptide or TMH reported as present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95383.1;transl_table=11
AM406670.1	EMBL	gene	3048521	3049915	.	+	.	ID=gene2818;Name=yfhK;gbkey=Gene;gene=yfhK;gene_biotype=protein_coding;locus_tag=azo2768
AM406670.1	EMBL	CDS	3048521	3049915	.	+	0	ID=cds2765;Parent=gene2818;Dbxref=EnsemblGenomes-Gn:azo2768,EnsemblGenomes-Tr:CAL95384,GOA:A1K979,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1K979,NCBI_GP:CAL95384.1;Name=CAL95384.1;Note=Putative two-component system sensor kinase%2C%3B~Family membership;gbkey=CDS;gene=yfhK;product=putative two-component system sensor kinase;protein_id=CAL95384.1;transl_table=11
AM406670.1	EMBL	gene	3049908	3050480	.	+	.	ID=gene2819;Name=azo2769;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2769
AM406670.1	EMBL	CDS	3049908	3050480	.	+	0	ID=cds2766;Parent=gene2819;Dbxref=EnsemblGenomes-Gn:azo2769,EnsemblGenomes-Tr:CAL95385,UniProtKB/TrEMBL:A1K980,NCBI_GP:CAL95385.1;Name=CAL95385.1;Note=Conserved hypothetical secreted protein. Homology to ebA964 of Azoarcus sp. EbN1 of 33%25 (gnl|keqq|eba:ebA964(KEGG)). No domains predicted. Signal P reporting signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95385.1;transl_table=11
AM406670.1	EMBL	gene	3050477	3051874	.	+	.	ID=gene2820;Name=yfhA;gbkey=Gene;gene=yfhA;gene_biotype=protein_coding;locus_tag=azo2770
AM406670.1	EMBL	CDS	3050477	3051874	.	+	0	ID=cds2767;Parent=gene2820;Dbxref=EnsemblGenomes-Gn:azo2770,EnsemblGenomes-Tr:CAL95386,GOA:A1K981,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K981,NCBI_GP:CAL95386.1;Name=CAL95386.1;Note=Putative two component transcriptional regulator%2C%3B~Conserved hypothetical protein;gbkey=CDS;gene=yfhA;product=putative two component transcriptional regulator;protein_id=CAL95386.1;transl_table=11
AM406670.1	EMBL	gene	3051907	3053010	.	+	.	ID=gene2821;Name=azo2771;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2771
AM406670.1	EMBL	CDS	3051907	3053010	.	+	0	ID=cds2768;Parent=gene2821;Dbxref=EnsemblGenomes-Gn:azo2771,EnsemblGenomes-Tr:CAL95387,GOA:A1K982,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,UniProtKB/TrEMBL:A1K982,NCBI_GP:CAL95387.1;Name=CAL95387.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95387.1;transl_table=11
AM406670.1	EMBL	gene	3053030	3054127	.	-	.	ID=gene2822;Name=azo2772;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2772
AM406670.1	EMBL	CDS	3053030	3054127	.	-	0	ID=cds2769;Parent=gene2822;Dbxref=EnsemblGenomes-Gn:azo2772,EnsemblGenomes-Tr:CAL95388,GOA:A1K983,InterPro:IPR004506,InterPro:IPR014729,InterPro:IPR023382,NCBI_GP:CAL95388.1;Name=CAL95388.1;Note=Region start changed from 3054127 to 3054100 (-27 bases);gbkey=CDS;product=tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase;protein_id=CAL95388.1;transl_table=11
AM406670.1	EMBL	gene	3054144	3054806	.	-	.	ID=gene2823;Name=azo2773;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2773
AM406670.1	EMBL	CDS	3054144	3054806	.	-	0	ID=cds2770;Parent=gene2823;Dbxref=EnsemblGenomes-Gn:azo2773,EnsemblGenomes-Tr:CAL95389,UniProtKB/TrEMBL:A1K984,NCBI_GP:CAL95389.1;Name=CAL95389.1;Note=Conserved hypothetical secreted protein. Homology to ebA988 of Azoarcus sp. EbN1 of 43%25 (gnl|keqq|eba:ebA988(KEGG)). no domains predicted. signal peptie. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95389.1;transl_table=11
AM406670.1	EMBL	gene	3054806	3055288	.	-	.	ID=gene2824;Name=azo2774;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2774
AM406670.1	EMBL	CDS	3054806	3055288	.	-	0	ID=cds2771;Parent=gene2824;Dbxref=EnsemblGenomes-Gn:azo2774,EnsemblGenomes-Tr:CAL95390,GOA:A1K985,InterPro:IPR000086,InterPro:IPR015797,UniProtKB/TrEMBL:A1K985,NCBI_GP:CAL95390.1;Name=CAL95390.1;Note=Putative Nudix hydrolase ymfB (EC 3.6.-.-). mutt: mutator mutT protein%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95390.1;transl_table=11
AM406670.1	EMBL	gene	3055412	3056332	.	+	.	ID=gene2825;Name=ilvE2;gbkey=Gene;gene=ilvE2;gene_biotype=protein_coding;locus_tag=azo2775
AM406670.1	EMBL	CDS	3055412	3056332	.	+	0	ID=cds2772;Parent=gene2825;Dbxref=EnsemblGenomes-Gn:azo2775,EnsemblGenomes-Tr:CAL95391,GOA:A1K986,InterPro:IPR001544,InterPro:IPR005785,UniProtKB/TrEMBL:A1K986,NCBI_GP:CAL95391.1;Name=CAL95391.1;Note=Branched-chain amino acid aminotransferase (BCAT). Acts on leucine isoleucine and valine (By similarity). InterPro: Aminotransferases class-IV%3B~High confidence in function and specificity;gbkey=CDS;gene=ilvE2;product=branched-chain-amino-acid transaminase;protein_id=CAL95391.1;transl_table=11
AM406670.1	EMBL	gene	3056343	3056543	.	+	.	ID=gene2826;Name=azo2776;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2776
AM406670.1	EMBL	CDS	3056343	3056543	.	+	0	ID=cds2773;Parent=gene2826;Dbxref=EnsemblGenomes-Gn:azo2776,EnsemblGenomes-Tr:CAL95392,InterPro:IPR019401,UniProtKB/TrEMBL:A1K987,NCBI_GP:CAL95392.1;Name=CAL95392.1;Note=Hypothetical protein %2C 47%25 identity to TrEMBL%3BQ7NW97%2CTrEMBL%3BQ7VTV4(56%25 identity). No domains%2Crepeats%2C motifs or features present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95392.1;transl_table=11
AM406670.1	EMBL	gene	3056655	3057674	.	+	.	ID=gene2827;Name=azo2777;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2777
AM406670.1	EMBL	CDS	3056655	3057674	.	+	0	ID=cds2774;Parent=gene2827;Dbxref=EnsemblGenomes-Gn:azo2777,EnsemblGenomes-Tr:CAL95393,InterPro:IPR012020,InterPro:IPR029058,UniProtKB/TrEMBL:A1K988,NCBI_GP:CAL95393.1;Name=CAL95393.1;Note=Conserved hypothetical protein. Homology to ne1289 of N. europaea of 49%25 (trembl|Q82V21). InterPro: Esterase/lipase/thioesterase family active site (IPR000379). no signal peptide. no TMH.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95393.1;transl_table=11
AM406670.1	EMBL	gene	3057734	3059125	.	+	.	ID=gene2828;Name=pgm;gbkey=Gene;gene=pgm;gene_biotype=protein_coding;locus_tag=azo2778
AM406670.1	EMBL	CDS	3057734	3059125	.	+	0	ID=cds2775;Parent=gene2828;Dbxref=EnsemblGenomes-Gn:azo2778,EnsemblGenomes-Tr:CAL95394,GOA:A1K989,InterPro:IPR005841,InterPro:IPR005843,InterPro:IPR005844,InterPro:IPR005845,InterPro:IPR005846,InterPro:IPR016055,UniProtKB/TrEMBL:A1K989,NCBI_GP:CAL95394.1;Name=CAL95394.1;Note=Phosphomannomutase/phosphoglucomutase (PMM / PGM). The phosphomannomutase activity produces a precursor for alginate polymerization. This enzyme participates in both the breakdown and synthesis of glucose.Catalytic activity: Alpha-D-glucose 1-phosphate %3D alpha-D-glucose 6-phosphate. 58%25 PG/PMM_mutase.IPR005844%3B PG_PMM_ABAI.IPR005845%3B PG_PMM_ABAII.IPR005846%3B PG_PMM_ABAIII.IPR005843%3B PG_PMM_C. Pfam:PF02878%3B PGM_PMM_I%3B 1.PF02879%3B PGM_PMM_II%3B 1.PF02880%3B PGM_PMM_III. PF00408%3B PGM_PMM_IV%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=pgm;product=putative phosphoglucomutase;protein_id=CAL95394.1;transl_table=11
AM406670.1	EMBL	gene	3059222	3060082	.	+	.	ID=gene2829;Name=azo2779;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2779
AM406670.1	EMBL	CDS	3059222	3060082	.	+	0	ID=cds2776;Parent=gene2829;Dbxref=EnsemblGenomes-Gn:azo2779,EnsemblGenomes-Tr:CAL95395,InterPro:IPR013976,UniProtKB/TrEMBL:A1K990,NCBI_GP:CAL95395.1;Name=CAL95395.1;Note=Conserved hypothetical protein with unknown function. No domains predicted. Similarity to TREMBL: trembl|Q9I6D7 (33%25 Pseudomonas aeruginosa%2C hypothetical protein pa0356) / trembl|Q88CQ4 (30%25 Pseudomonas putida (strain KT2440)%2C pp5126);gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95395.1;transl_table=11
AM406670.1	EMBL	gene	3060174	3062831	.	-	.	ID=gene2830;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;locus_tag=azo2780
AM406670.1	EMBL	CDS	3060174	3062831	.	-	0	ID=cds2777;Parent=gene2830;Dbxref=EnsemblGenomes-Gn:azo2780,EnsemblGenomes-Tr:CAL95396,GOA:A1K991,InterPro:IPR002318,InterPro:IPR003156,InterPro:IPR009000,InterPro:IPR012947,InterPro:IPR018162,InterPro:IPR018163,InterPro:IPR018164,InterPro:IPR018165,InterPro:IPR023033,NCBI_GP:CAL95396.1;Name=CAL95396.1;Note=Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS). InterPro: Alanyl-tRNA synthetase alaS: alanyl-tRNA synthetase%3B~High confidence in function and specificity;gbkey=CDS;gene=alaS;product=AlaS protein;protein_id=CAL95396.1;transl_table=11
AM406670.1	EMBL	gene	3062977	3063528	.	+	.	ID=gene2831;Name=azo2781;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2781
AM406670.1	EMBL	CDS	3062977	3063528	.	+	0	ID=cds2778;Parent=gene2831;Dbxref=EnsemblGenomes-Gn:azo2781,EnsemblGenomes-Tr:CAL95397,InterPro:IPR016030,InterPro:IPR029499,UniProtKB/TrEMBL:A1K992,NCBI_GP:CAL95397.1;Name=CAL95397.1;Note=Conserved hypothetical protein. Homology to ebA1022 of Azoarcus sp. EbN1 of 86%25 (gnl|keqq|eba:ebA1022(KEGG)). Has PF01923%2C Cobalamin adenosyltransferase%3BIPR002779%2CDUF80%3B This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1%2C2-propanediol degradation. The EutT enzyme appears to be an adenosyl transferase%2C converting CNB12 to AdoB12. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95397.1;transl_table=11
AM406670.1	EMBL	gene	3063558	3063926	.	-	.	ID=gene2832;Name=azo2782;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2782
AM406670.1	EMBL	CDS	3063558	3063926	.	-	0	ID=cds2779;Parent=gene2832;Dbxref=EnsemblGenomes-Gn:azo2782,EnsemblGenomes-Tr:CAL95398,InterPro:IPR003731,UniProtKB/TrEMBL:A1K993,NCBI_GP:CAL95398.1;Name=CAL95398.1;Note=Conserved hypothetical protein. Homology to am orf of Azotobacter vinelandii of 51%25 (gi|67087339|gb|EAM06806.1). Pfam: Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B%2CY and X) proteins which are iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyses the reduction of dinitrogen to ammonium. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95398.1;transl_table=11
AM406670.1	EMBL	gene	3063993	3064577	.	+	.	ID=gene2833;Name=azo2783;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2783
AM406670.1	EMBL	CDS	3063993	3064577	.	+	0	ID=cds2780;Parent=gene2833;Dbxref=EnsemblGenomes-Gn:azo2783,EnsemblGenomes-Tr:CAL95399,GOA:A1K994,InterPro:IPR005123,InterPro:IPR027450,UniProtKB/TrEMBL:A1K994,NCBI_GP:CAL95399.1;Name=CAL95399.1;Note=Probable RNA-directed RNA polymerase (EC 2.7.7.48) (RNA replicase) (216.5 kDa protein) (ORF1). alkb: alkylated DNA repair protein AlkB.%3B~Function unclear;gbkey=CDS;product=DNA repair system specific for alkylated DNA;protein_id=CAL95399.1;transl_table=11
AM406670.1	EMBL	gene	3064764	3065855	.	+	.	ID=gene2834;Name=azo2784;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2784
AM406670.1	EMBL	CDS	3064764	3065855	.	+	0	ID=cds2781;Parent=gene2834;Dbxref=EnsemblGenomes-Gn:azo2784,EnsemblGenomes-Tr:CAL95400,GOA:A1K995,InterPro:IPR002937,UniProtKB/TrEMBL:A1K995,NCBI_GP:CAL95400.1;Name=CAL95400.1;Note=Conserved hypothetical monoamine oxidase. Homology to rsp0431 of R. solanacearum of 34%25 (trembl|Q8XSN6). In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. InterPro: Amine oxidase (IPR002937). Pfam: Flavin containing amine oxidase. probable signal peptide. no TMH.%3B~Family membership;gbkey=CDS;product=conserved hypothetical monoamine oxidase;protein_id=CAL95400.1;transl_table=11
AM406670.1	EMBL	gene	3065910	3067784	.	-	.	ID=gene2835;Name=azo2785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2785
AM406670.1	EMBL	CDS	3065910	3067784	.	-	0	ID=cds2782;Parent=gene2835;Dbxref=EnsemblGenomes-Gn:azo2785,EnsemblGenomes-Tr:CAL95401,GOA:A1K996,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR027417,UniProtKB/TrEMBL:A1K996,NCBI_GP:CAL95401.1;Name=CAL95401.1;Note=Conserved hypothetical membrane protein. Homology to SC3D11.05C of Streptomyces coelicolor of 33%25 (trembl|Q9L1F7(SRS)). Pfam (PF00005): ABC transporter. Pfam (PF00664): ABC transporter transmembrane region. TMHMM reporting three transmembrane helices. No signal peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95401.1;transl_table=11
AM406670.1	EMBL	gene	3067852	3068925	.	-	.	ID=gene2836;Name=dinP;gbkey=Gene;gene=dinP;gene_biotype=protein_coding;locus_tag=azo2786
AM406670.1	EMBL	CDS	3067852	3068925	.	-	0	ID=cds2783;Parent=gene2836;Dbxref=EnsemblGenomes-Gn:azo2786,EnsemblGenomes-Tr:CAL95402,GOA:A1K997,InterPro:IPR001126,InterPro:IPR017961,InterPro:IPR017963,InterPro:IPR022880,InterPro:IPR024728,UniProtKB/TrEMBL:A1K997,NCBI_GP:CAL95402.1;Name=CAL95402.1;Note=DNA polymerase IV (EC 2.7.7.7) (Pol IV). Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity). InterPro: UMUC family (DNA-repair).%3B~High confidence in function and specificity;gbkey=CDS;gene=dinP;product=DNA-directed DNA polymerase;protein_id=CAL95402.1;transl_table=11
AM406670.1	EMBL	gene	3068980	3070395	.	-	.	ID=gene2837;Name=rumC;gbkey=Gene;gene=rumC;gene_biotype=protein_coding;locus_tag=azo2787
AM406670.1	EMBL	CDS	3068980	3070395	.	-	0	ID=cds2784;Parent=gene2837;Dbxref=EnsemblGenomes-Gn:azo2787,EnsemblGenomes-Tr:CAL95403,InterPro:IPR003798,UniProtKB/TrEMBL:A1K998,NCBI_GP:CAL95403.1;Name=CAL95403.1;Note=Conserved hypothetical RumC homolog. Homology to rumC of P.aeruginosa of 43%25 (gi|20139744|sp|Q9I4U3|RMUC_PSEAE). Pfam: RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action%2C or is itself involved in DNA cleavage at the regions of DNA secondary structures. Signal peptide predicted. 2 TMHs.%2C%3B~Conserved hypothetical protein;gbkey=CDS;gene=rumC;product=conserved hypothetical RumC homolog;protein_id=CAL95403.1;transl_table=11
AM406670.1	EMBL	gene	3070509	3071594	.	-	.	ID=gene2838;Name=aroG;gbkey=Gene;gene=aroG;gene_biotype=protein_coding;locus_tag=azo2788
AM406670.1	EMBL	CDS	3070509	3071594	.	-	0	ID=cds2785;Parent=gene2838;Dbxref=EnsemblGenomes-Gn:azo2788,EnsemblGenomes-Tr:CAL95404,GOA:A1K999,InterPro:IPR006218,InterPro:IPR006219,InterPro:IPR013785,UniProtKB/TrEMBL:A1K999,NCBI_GP:CAL95404.1;Name=CAL95404.1;Note=Phospho-2-dehydro-3-deoxyheptonate aldolase. Homology to aroG of E. coli of 67%25 (AAA23492). Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). InterPro: DAHP synthetase class I (IPR006218) Tigrfam: aroFGH: phospho-2-dehydro-3-deoxyheptonate aldolase Pfam: DAHP synthetase I family no sognal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=aroG;product=phospho-2-dehydro-3-deoxyheptonate aldolase;protein_id=CAL95404.1;transl_table=11
AM406670.1	EMBL	gene	3071733	3072989	.	+	.	ID=gene2839;Name=kefC;gbkey=Gene;gene=kefC;gene_biotype=protein_coding;locus_tag=azo2789
AM406670.1	EMBL	CDS	3071733	3072989	.	+	0	ID=cds2786;Parent=gene2839;Dbxref=EnsemblGenomes-Gn:azo2789,EnsemblGenomes-Tr:CAL95405,GOA:A1K9A0,InterPro:IPR006153,UniProtKB/TrEMBL:A1K9A0,NCBI_GP:CAL95405.1;Name=CAL95405.1;Note=Glutathione-regulated potassium-efflux system protein kefC (K(+)/H(+) antiporter). Transport system that facilitates potassium-efflux possibly by potassium-proton antiport.Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. KefC subfamily. 23%25 K_eff.IPR006153%3B Na_H_porter. Pfam:PF00999%3B Na_H_Exchanger%3B 1. TIGRFAMs:TIGR00932%3B 2a37%3B 1. TMHelix:11%3B~High confidence in function and specificity;gbkey=CDS;gene=kefC;product=putative cation/proton antiporter;protein_id=CAL95405.1;transl_table=11
AM406670.1	EMBL	gene	3073104	3074060	.	+	.	ID=gene2840;Name=azo2790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2790
AM406670.1	EMBL	CDS	3073104	3074060	.	+	0	ID=cds2787;Parent=gene2840;Dbxref=EnsemblGenomes-Gn:azo2790,EnsemblGenomes-Tr:CAL95406,GOA:A1K9A1,InterPro:IPR000572,InterPro:IPR006311,InterPro:IPR022867,UniProtKB/TrEMBL:A1K9A1,NCBI_GP:CAL95406.1;Name=CAL95406.1;Note=Hypothetical protein RSc2981. TREMBL:Q7W5H6: 56%25 identity%2C 69%25 similarity Belongs to a family of predicted long%2C non-Sec signal sequences and signal-anchor sequences (uncleaved signal sequences). All contain an absolutely conserved pair of arginine residues%2C in a motif approximated by (S/T)-R-R-X-F-L-K%2C followed by a membrane-spanning hydrophobic region. InterPro: IPR000572%3B Oxidored_molyb. IPR006311%3B Tat. Pfam: PF00174%3B Oxidored_molyb%3B 1. TIGRFAMs : TIGR01409%3B TAT_signal_seq%3B SignalP predicted signal peptide (probability:0.954). No transmembrane helices (TMHMM predicted).%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95406.1;transl_table=11
AM406670.1	EMBL	gene	3074075	3074752	.	+	.	ID=gene2841;Name=azo2791;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2791
AM406670.1	EMBL	CDS	3074075	3074752	.	+	0	ID=cds2788;Parent=gene2841;Dbxref=EnsemblGenomes-Gn:azo2791,EnsemblGenomes-Tr:CAL95407,GOA:A1K9A2,InterPro:IPR013130,InterPro:IPR022837,UniProtKB/TrEMBL:A1K9A2,NCBI_GP:CAL95407.1;Name=CAL95407.1;Note=Conserved hypothetical membrane protein. Homology to cv0790 of C. violaceum of 50%25 (tremble:Q7NZX9). Has PF05252%2C Uncharacterised protein family (UPF0191)%3BIPR007916 %3B This family of proteins is functionally uncharacterised. signal peptide. 5 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95407.1;transl_table=11
AM406670.1	EMBL	gene	3074783	3075376	.	-	.	ID=gene2842;Name=mogA;gbkey=Gene;gene=mogA;gene_biotype=protein_coding;locus_tag=azo2792
AM406670.1	EMBL	CDS	3074783	3075376	.	-	0	ID=cds2789;Parent=gene2842;Dbxref=EnsemblGenomes-Gn:azo2792,EnsemblGenomes-Tr:CAL95408,GOA:A1K9A3,InterPro:IPR001453,InterPro:IPR008284,InterPro:IPR020817,UniProtKB/TrEMBL:A1K9A3,NCBI_GP:CAL95408.1;Name=CAL95408.1;Note=Molybdopterin biosynthesis mog protein. Involved in the biosynthesis of a demolybdo-cofactor (molybdopterin) necessary for molybdo-enzymes (By similarity). InterPro: Molybdenum cofactor biosynthesis protein TIGRFAM: molyb_syn: molybdenum cofactor synthesis%3B~High confidence in function and specificity;gbkey=CDS;gene=mogA;product=molybdopterin biosynthesis Mog protein;protein_id=CAL95408.1;transl_table=11
AM406670.1	EMBL	gene	3075373	3075936	.	-	.	ID=gene2843;Name=yjgA;gbkey=Gene;gene=yjgA;gene_biotype=protein_coding;locus_tag=azo2793
AM406670.1	EMBL	CDS	3075373	3075936	.	-	0	ID=cds2790;Parent=gene2843;Dbxref=EnsemblGenomes-Gn:azo2793,EnsemblGenomes-Tr:CAL95409,InterPro:IPR006839,InterPro:IPR023153,UniProtKB/TrEMBL:A1K9A4,NCBI_GP:CAL95409.1;Name=CAL95409.1;Note=Hypothetical protein yjgA%2C 46%25 identity(59%25 similarity) to SwissProt%3BQ8FAF3.SwissProt%3BQ83P53 Has PF04751%2C Protein of unknown function (DUF615)%3BIPR006839%3BThis family of bacterial proteins has no known function. NO Signal Peptide or TMH reported present.%3B~Function unclear;gbkey=CDS;gene=yjgA;product=conserved hypothetical protein;protein_id=CAL95409.1;transl_table=11
AM406670.1	EMBL	gene	3076001	3077341	.	+	.	ID=gene2844;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;locus_tag=azo2794
AM406670.1	EMBL	CDS	3076001	3077341	.	+	0	ID=cds2791;Parent=gene2844;Dbxref=EnsemblGenomes-Gn:azo2794,EnsemblGenomes-Tr:CAL95410,InterPro:IPR002510,UniProtKB/TrEMBL:A1K9A5,NCBI_GP:CAL95410.1;Name=CAL95410.1;Note=Probable PmbA protein. Homology to pmbA of E. coli of 48%25 (sprot|PMBA_ECOLI). MAY FACILITATE THE SECRETION OF THE PEPTIDE ANTIBIOTIC MICROCIN B17 (MCCB17) BY COMPLETING ITS MATURATION. SUPPRESSES THE INHIBITORY ACTIVITY OF THE CARBON STORAGE REGULATOR (CSRA). Pfam: Putative modulator of DNA gyrase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=pmbA;product=probable PmbA protein;protein_id=CAL95410.1;transl_table=11
AM406670.1	EMBL	gene	3077588	3078736	.	+	.	ID=gene2845;Name=azo2795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2795
AM406670.1	EMBL	CDS	3077588	3078736	.	+	0	ID=cds2792;Parent=gene2845;Dbxref=EnsemblGenomes-Gn:azo2795,EnsemblGenomes-Tr:CAL95411,GOA:A1K9A6,InterPro:IPR006311,InterPro:IPR018389,InterPro:IPR026289,UniProtKB/TrEMBL:A1K9A6,NCBI_GP:CAL95411.1;Name=CAL95411.1;Note=Similar to TREMBL:Q8G2H7 (58%25 identity)%3B TREMBL:Q8UK55 (57%25 identity)%3B TREMBL:Q89NT9 (58%25 identity). SignalP reporting signal peptide.%3B~Specificity unclear;gbkey=CDS;product=putative periplasmic substrate binding protein;protein_id=CAL95411.1;transl_table=11
AM406670.1	EMBL	gene	3078912	3080594	.	-	.	ID=gene2846;Name=azo2796;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2796
AM406670.1	EMBL	CDS	3078912	3080594	.	-	0	ID=cds2793;Parent=gene2846;Dbxref=EnsemblGenomes-Gn:azo2796,EnsemblGenomes-Tr:CAL95412,InterPro:IPR010656,UniProtKB/TrEMBL:A1K9A7,NCBI_GP:CAL95412.1;Name=CAL95412.1;Note=Similar to TREMBL:Q7WQP2 (61%25 identity)%3B TREMBL:Q7W1R6 (61%25 identity)%3B TREMBL:Q8G2H8 (50%25 identity). TIGRFAM (TIGR00786): TRAP transporter%2C DctM subunit. TMHMM predicting 14 transmembrane helices.%3B~Specificity unclear;gbkey=CDS;product=putative large permease component of TRAP-type transporter;protein_id=CAL95412.1;transl_table=11
AM406670.1	EMBL	gene	3080591	3081184	.	-	.	ID=gene2847;Name=azo2797;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2797
AM406670.1	EMBL	CDS	3080591	3081184	.	-	0	ID=cds2794;Parent=gene2847;Dbxref=EnsemblGenomes-Gn:azo2797,EnsemblGenomes-Tr:CAL95413,InterPro:IPR007387,UniProtKB/TrEMBL:A1K9A8,NCBI_GP:CAL95413.1;Name=CAL95413.1;Note=Similar to TREMBL:Q7WQP3 52%25 identity)%3B TREMBL:Q92P73 (54%25 identity)%3B TREMBL:Q8UK53 (48%25 identity). TMHMM reporting four transmembrane helices.%3B~Specificity unclear;gbkey=CDS;product=putative small permease component of TRAP-type transporter;protein_id=CAL95413.1;transl_table=11
AM406670.1	EMBL	gene	3081308	3081982	.	+	.	ID=gene2848;Name=gpmB;gbkey=Gene;gene=gpmB;gene_biotype=protein_coding;locus_tag=azo2798
AM406670.1	EMBL	CDS	3081308	3081982	.	+	0	ID=cds2795;Parent=gene2848;Dbxref=EnsemblGenomes-Gn:azo2798,EnsemblGenomes-Tr:CAL95414,GOA:A1K9A9,InterPro:IPR001345,InterPro:IPR013078,InterPro:IPR029033,UniProtKB/TrEMBL:A1K9A9,NCBI_GP:CAL95414.1;Name=CAL95414.1;Note=Probable phosphoglycerate mutase GpmB (phosphoglyceromutase) 0(Pgam). Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate 31%25 PG/BPGM_mutase. Pfam:PF00300%3B PGAM%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=gpmB;product=probable phosphoglycerate mutase;protein_id=CAL95414.1;transl_table=11
AM406670.1	EMBL	gene	3082083	3083501	.	+	.	ID=gene2849;Name=kdpD1;gbkey=Gene;gene=kdpD1;gene_biotype=protein_coding;locus_tag=azo2799
AM406670.1	EMBL	CDS	3082083	3083501	.	+	0	ID=cds2796;Parent=gene2849;Dbxref=EnsemblGenomes-Gn:azo2799,EnsemblGenomes-Tr:CAL95415,GOA:A1K9B0,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR025201,UniProtKB/TrEMBL:A1K9B0,NCBI_GP:CAL95415.1;Name=CAL95415.1;Note=Probable two component sensor protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=kdpD1;product=probable two component sensor protein;protein_id=CAL95415.1;transl_table=11
AM406670.1	EMBL	gene	3083510	3084190	.	+	.	ID=gene2850;Name=kdpE;gbkey=Gene;gene=kdpE;gene_biotype=protein_coding;locus_tag=azo2800
AM406670.1	EMBL	CDS	3083510	3084190	.	+	0	ID=cds2797;Parent=gene2850;Dbxref=EnsemblGenomes-Gn:azo2800,EnsemblGenomes-Tr:CAL95416,GOA:A1K9B1,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:A1K9B1,NCBI_GP:CAL95416.1;Name=CAL95416.1;Note=Transcriptional regulatory protein KdpE%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=kdpE;product=two component system transcriptional regulatory protein;protein_id=CAL95416.1;transl_table=11
AM406670.1	EMBL	gene	3084401	3085651	.	+	.	ID=gene2851;Name=glyA;gbkey=Gene;gene=glyA;gene_biotype=protein_coding;locus_tag=azo2801
AM406670.1	EMBL	CDS	3084401	3085651	.	+	0	ID=cds2798;Parent=gene2851;Dbxref=EnsemblGenomes-Gn:azo2801,EnsemblGenomes-Tr:CAL95417,GOA:A1K9B2,InterPro:IPR001085,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR019798,NCBI_GP:CAL95417.1;Name=CAL95417.1;Note=Serine hydroxymethyltransferase%2C GlyA%2C catalyzes the interconversion of serine%2C glycine%2C and one-carbon (c1) units and is the cell`s major source of c1 units. Similar to sprot|GLYA_ECOLI (61%25) and to pir|D83070 (61%25). Pfam: Serine hydroxymethyltransferase%2C SHMT%3B~High confidence in function and specificity;gbkey=CDS;gene=glyA;product=serine hydroxymethyltransferase;protein_id=CAL95417.1;transl_table=11
AM406670.1	EMBL	gene	3085693	3086208	.	+	.	ID=gene2852;Name=ribX;gbkey=Gene;gene=ribX;gene_biotype=protein_coding;locus_tag=azo2802
AM406670.1	EMBL	CDS	3085693	3086208	.	+	0	ID=cds2799;Parent=gene2852;Dbxref=EnsemblGenomes-Gn:azo2802,EnsemblGenomes-Tr:CAL95418,GOA:A1K9B3,InterPro:IPR003796,InterPro:IPR005144,NCBI_GP:CAL95418.1;Name=CAL95418.1;Note=Transcriptional regulator%2C%3B~Conserved hypothetical protein;gbkey=CDS;gene=ribX;product=transcriptional regulator;protein_id=CAL95418.1;transl_table=11
AM406670.1	EMBL	gene	3086189	3087280	.	+	.	ID=gene2853;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=azo2803
AM406670.1	EMBL	CDS	3086189	3087280	.	+	0	ID=cds2800;Parent=gene2853;Dbxref=EnsemblGenomes-Gn:azo2803,EnsemblGenomes-Tr:CAL95419,GOA:A1K9B4,InterPro:IPR002125,InterPro:IPR002734,InterPro:IPR004794,InterPro:IPR011549,InterPro:IPR016192,InterPro:IPR016193,InterPro:IPR024072,UniProtKB/TrEMBL:A1K9B4,NCBI_GP:CAL95419.1;Name=CAL95419.1;Note=Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase)%3B 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)]. CONVERTS 25-DIAMINO-6-(RIBOSYLAMINO)-4(3H)-PYRIMIDINONE 5-PHOSPHATE INTO 5-AMINO-6-(RIBOSYLAMINO)-24(1H3H)- PYRIMIDINEDIONE 5-PHOSPHATE. InterPro: Riboflavin biosynthesis protein RibD TIGRFAM: eubact_ribD: riboflavin biosynthesis protein%3B~High confidence in function and specificity;gbkey=CDS;gene=ribD;product=AMP deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase;protein_id=CAL95419.1;transl_table=11
AM406670.1	EMBL	gene	3087294	3088043	.	-	.	ID=gene2854;Name=azo2804;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2804
AM406670.1	EMBL	CDS	3087294	3088043	.	-	0	ID=cds2801;Parent=gene2854;Dbxref=EnsemblGenomes-Gn:azo2804,EnsemblGenomes-Tr:CAL95420,GOA:A1K9B5,InterPro:IPR000594,InterPro:IPR007901,InterPro:IPR009036,InterPro:IPR016040,UniProtKB/TrEMBL:A1K9B5,NCBI_GP:CAL95420.1;Name=CAL95420.1;Note=Dinucleotide-utilizing enzyme involved in molybdopterin and/or thiamine biosynthesis Belongs to the hesA/moeB/thiF family%2C by similarity. TIGR00292: thiazole biosynthesis enzyme%3B~High confidence in function and specificity;gbkey=CDS;product=adenylyltransferase%2C putative;protein_id=CAL95420.1;transl_table=11
AM406670.1	EMBL	gene	3088140	3088598	.	-	.	ID=gene2855;Name=azo2805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2805
AM406670.1	EMBL	CDS	3088140	3088598	.	-	0	ID=cds2802;Parent=gene2855;Dbxref=EnsemblGenomes-Gn:azo2805,EnsemblGenomes-Tr:CAL95421,UniProtKB/TrEMBL:A1K9B6,NCBI_GP:CAL95421.1;Name=CAL95421.1;Note=Conserved hypothetical protein. Homlogy to ebA1048 Azoarcus sp. EbN1 of 65%25 (gnl|keqq|eba:ebA1048(KEGG)). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95421.1;transl_table=11
AM406670.1	EMBL	gene	3088619	3089998	.	-	.	ID=gene2856;Name=ctpa;gbkey=Gene;gene=ctpa;gene_biotype=protein_coding;locus_tag=azo2806
AM406670.1	EMBL	CDS	3088619	3089998	.	-	0	ID=cds2803;Parent=gene2856;Dbxref=EnsemblGenomes-Gn:azo2806,EnsemblGenomes-Tr:CAL95422,GOA:A1K9B7,InterPro:IPR001478,InterPro:IPR004447,InterPro:IPR005151,InterPro:IPR029045,UniProtKB/TrEMBL:A1K9B7,NCBI_GP:CAL95422.1;Name=CAL95422.1;Note=Carboxy-terminal processing protease precursor (EC 3.4.21.102) (C- terminal processing protease). prc: carboxyl-terminal protease%3B~High confidence in function and specificity;gbkey=CDS;gene=ctpa;product=carboxy-terminal processing protease precursor;protein_id=CAL95422.1;transl_table=11
AM406670.1	EMBL	gene	3090060	3091394	.	-	.	ID=gene2857;Name=azo2807;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2807
AM406670.1	EMBL	CDS	3090060	3091394	.	-	0	ID=cds2804;Parent=gene2857;Dbxref=EnsemblGenomes-Gn:azo2807,EnsemblGenomes-Tr:CAL95423,InterPro:IPR011055,InterPro:IPR016047,UniProtKB/TrEMBL:A1K9B8,NCBI_GP:CAL95423.1;Name=CAL95423.1;Note=Homology to peptidase%2C M23/M37 family InterPro: Peptidase family M23/M37;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95423.1;transl_table=11
AM406670.1	EMBL	gene	3091417	3092166	.	-	.	ID=gene2858;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=azo2808
AM406670.1	EMBL	CDS	3091417	3092166	.	-	0	ID=cds2805;Parent=gene2858;Dbxref=EnsemblGenomes-Gn:azo2808,EnsemblGenomes-Tr:CAL95424,GOA:A1K9B9,InterPro:IPR001345,InterPro:IPR005952,InterPro:IPR013078,InterPro:IPR029033,NCBI_GP:CAL95424.1;Name=CAL95424.1;Note=2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase(Phosphoglyceromutase)(PGAM)(BPG-dependent PGAM)(dPGM). Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate. Involved in the glycolysis%2Cstrongly inhibited by vanadate and regulated by Fur. 65%25 PG/BPGM_mutase.IPR005952%3B Phosphogly_mut1. Pfam:PF00300%3B PGAM%3B 1. TIGRFAMs:TIGR01258%3B pgm_1%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=gpmA;product=putative phosphoglycerate mutase;protein_id=CAL95424.1;transl_table=11
AM406670.1	EMBL	gene	3092165	3092641	.	+	.	ID=gene2859;Name=hlyU;gbkey=Gene;gene=hlyU;gene_biotype=protein_coding;locus_tag=azo2809
AM406670.1	EMBL	CDS	3092165	3092641	.	+	0	ID=cds2806;Parent=gene2859;Dbxref=EnsemblGenomes-Gn:azo2809,EnsemblGenomes-Tr:CAL95425,GOA:A1K9C0,InterPro:IPR001845,InterPro:IPR011991,UniProtKB/TrEMBL:A1K9C0,NCBI_GP:CAL95425.1;Name=CAL95425.1;Note=Putative transcriptional activator%2C ArsR family%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=hlyU;product=putative transcriptional activator%2C ArsR family;protein_id=CAL95425.1;transl_table=11
AM406670.1	EMBL	gene	3092677	3093093	.	+	.	ID=gene2860;Name=azo2810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2810
AM406670.1	EMBL	CDS	3092677	3093093	.	+	0	ID=cds2807;Parent=gene2860;Dbxref=EnsemblGenomes-Gn:azo2810,EnsemblGenomes-Tr:CAL95426,GOA:A1K9C1,InterPro:IPR001763,UniProtKB/TrEMBL:A1K9C1,NCBI_GP:CAL95426.1;Name=CAL95426.1;Note=Similar to Rhodanese domain protein%2C a sulphurtransferase involved in cyanide detoxification. Hypothetical protein slr1261. InterPro: Rhodanese/cdc25 fold%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95426.1;transl_table=11
AM406670.1	EMBL	gene	3093090	3093362	.	+	.	ID=gene2861;Name=grxC;gbkey=Gene;gene=grxC;gene_biotype=protein_coding;locus_tag=azo2811
AM406670.1	EMBL	CDS	3093090	3093362	.	+	0	ID=cds2808;Parent=gene2861;Dbxref=EnsemblGenomes-Gn:azo2811,EnsemblGenomes-Tr:CAL95427,GOA:A1K9C2,InterPro:IPR002109,InterPro:IPR011767,InterPro:IPR011900,InterPro:IPR012336,InterPro:IPR014025,UniProtKB/TrEMBL:A1K9C2,NCBI_GP:CAL95427.1;Name=CAL95427.1;Note=Probable glutaredoxin. Homology to grx3 of E. coli. of 53%25 (SWISSPROT:GLR3_ECOLI). The disulfide bond functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. In addition%2C it is also involved in reducing some disulfides in a coupled system with glutathione reductase. Pfam: Glutaredoxin Tigrfam: TIGR00365: glutaredoxin-related protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=grxC;product=probable glutaredoxin;protein_id=CAL95427.1;transl_table=11
AM406670.1	EMBL	gene	3093432	3093887	.	+	.	ID=gene2862;Name=secB;gbkey=Gene;gene=secB;gene_biotype=protein_coding;locus_tag=azo2812
AM406670.1	EMBL	CDS	3093432	3093887	.	+	0	ID=cds2809;Parent=gene2862;Dbxref=EnsemblGenomes-Gn:azo2812,EnsemblGenomes-Tr:CAL95428,GOA:A1K9C3,InterPro:IPR003708,NCBI_GP:CAL95428.1;Name=CAL95428.1;Note=Protein-export protein secB. THIS IS ONE OF THE PROTEINS REQUIRED FOR THE NORMAL EXPORT OF ENVELOPE PROTEINS OUT OF THE CELL CYTOPLASM%3B IT MAY BE INVOLVED IN THE INITIATION OF THE EXPORTING PROCESS BY BINDING TO THE NASCENT POLYPEPTIDE VIA A SIGNAL SEQUENCE MAINTAINING A STABLE AND PRE-TRANSLOCATION CONFORMATION. InterPro: Bacterial protein export chaperone SecB secB: protein-export protein SecB%3B~High confidence in function and specificity;gbkey=CDS;gene=secB;product=protein export chaperone SecB;protein_id=CAL95428.1;transl_table=11
AM406670.1	EMBL	gene	3093892	3094338	.	+	.	ID=gene2863;Name=azo2813;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2813
AM406670.1	EMBL	CDS	3093892	3094338	.	+	0	ID=cds2810;Parent=gene2863;Dbxref=EnsemblGenomes-Gn:azo2813,EnsemblGenomes-Tr:CAL95429,InterPro:IPR010466,UniProtKB/TrEMBL:A1K9C4,NCBI_GP:CAL95429.1;Name=CAL95429.1;Note=Conserved hypothetical secreted protein. Homology to CV1128 of Chromobacterium violaceum of 43%25 (trembl:Q7NYZ4). Has Signal Peptide. Has PF06347%2C Protein of unknown function (DUF1058)%3BIPR010466 %3BThis family consists of several hypothetical bacterial proteins of unknown function. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95429.1;transl_table=11
AM406670.1	EMBL	gene	3094335	3095324	.	+	.	ID=gene2864;Name=gpsA;gbkey=Gene;gene=gpsA;gene_biotype=protein_coding;locus_tag=azo2814
AM406670.1	EMBL	CDS	3094335	3095324	.	+	0	ID=cds2811;Parent=gene2864;Dbxref=EnsemblGenomes-Gn:azo2814,EnsemblGenomes-Tr:CAL95430,GOA:A1K9C5,InterPro:IPR006109,InterPro:IPR006168,InterPro:IPR008927,InterPro:IPR011128,InterPro:IPR013328,InterPro:IPR016040,UniProtKB/TrEMBL:A1K9C5,NCBI_GP:CAL95430.1;Name=CAL95430.1;Note=Probable NAD-dependent glycerol-3-phosphate dehydrogenase [NAD(P)+]. Homology to gpsA of B. subtilis of 41%25 (SWISSPROT:GPDA_BACSU). NAD-dependent glycerol-3-phosphate dehydrogenase catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. InterPro: NAD-dependent glycerol-3-phosphate dehydrogenase (IPR006109) Pfam: NAD-dependent glycerol-3-phosphate dehydrogeanse signal peptide no TMHs apbA_panE: 2-dehydropantoate 2-reductas%3B~High confidence in function and specificity;gbkey=CDS;gene=gpsA;product=probable NAD-dependent glycerol-3-phosphate dehydrogenase [NAD(P)+];protein_id=CAL95430.1;transl_table=11
AM406670.1	EMBL	gene	3095339	3095872	.	-	.	ID=gene2865;Name=azo2815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2815
AM406670.1	EMBL	CDS	3095339	3095872	.	-	0	ID=cds2812;Parent=gene2865;Dbxref=EnsemblGenomes-Gn:azo2815,EnsemblGenomes-Tr:CAL95431,GOA:A1K9C6,InterPro:IPR001537,InterPro:IPR016914,InterPro:IPR029026,InterPro:IPR029028,UniProtKB/TrEMBL:A1K9C6,NCBI_GP:CAL95431.1;Name=CAL95431.1;Note=Region start changed from 3095806 to 3095845 (39 bases);gbkey=CDS;product=tRNA/rRNA methylase;protein_id=CAL95431.1;transl_table=11
AM406670.1	EMBL	gene	3095879	3096571	.	-	.	ID=gene2866;Name=comF;gbkey=Gene;gene=comF;gene_biotype=protein_coding;locus_tag=azo2816
AM406670.1	EMBL	CDS	3095879	3096571	.	-	0	ID=cds2813;Parent=gene2866;Dbxref=EnsemblGenomes-Gn:azo2816,EnsemblGenomes-Tr:CAL95432,GOA:A1K9C7,InterPro:IPR000836,InterPro:IPR029057,UniProtKB/TrEMBL:A1K9C7,NCBI_GP:CAL95432.1;Name=CAL95432.1;Note=Hypothetical protein yhgH. Members of PRT family are catalytic and regulatory proteins involved in nucleotide synthesis and salvage. The name PRT comes from phosphoribosyltransferase enzymes%2C which carry out phosphoryl transfer reactions on PRPP%2C an activated form of ribose-5-phosphate SPROT:P46846: 33%25 identity%2C 51%25 similarity InterPro%3B IPR000836%3B PRtransferase. Pfam%3B PF00156%3B Pribosyltran%3B 1 Absence of Signal peptide and Transmembrane helices PPR: pentatricopeptide repeat domain%3B~High confidence in function and specificity;gbkey=CDS;gene=comF;product=putative competence protein F;protein_id=CAL95432.1;transl_table=11
AM406670.1	EMBL	gene	3096650	3097630	.	+	.	ID=gene2867;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;locus_tag=azo2817
AM406670.1	EMBL	CDS	3096650	3097630	.	+	0	ID=cds2814;Parent=gene2867;Dbxref=EnsemblGenomes-Gn:azo2817,EnsemblGenomes-Tr:CAL95433,GOA:A1K9C8,InterPro:IPR002684,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR010722,InterPro:IPR013785,InterPro:IPR024177,NCBI_GP:CAL95433.1;Name=CAL95433.1;Note=Biotin synthase (Biotin synthetase). catalytic activity: dethiobiotin + sulfur %3D biotin. cofactor: binds a 4fe-4s cluster coordinated with 3 cysteines and an exchangeable s-adenosyl-l-methionine%2C and a 2fe-2s cluster coordinated with 3 cysteines and 1 arginine. pathway: biotin biosynthesis%3B last step. similarity: belongs to the biotin and lipoic acid synthetases family. TIGRFAM: bioB: biotin synthetase%3B~High confidence in function and specificity;gbkey=CDS;gene=bioB;product=biotin synthase;protein_id=CAL95433.1;transl_table=11
AM406670.1	EMBL	gene	3097630	3098547	.	+	.	ID=gene2868;Name=bioC2;gbkey=Gene;gene=bioC2;gene_biotype=protein_coding;locus_tag=azo2818
AM406670.1	EMBL	CDS	3097630	3098547	.	+	0	ID=cds2815;Parent=gene2868;Dbxref=EnsemblGenomes-Gn:azo2818,EnsemblGenomes-Tr:CAL95434,GOA:A1K9C9,InterPro:IPR011814,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:A1K9C9,NCBI_GP:CAL95434.1;Name=CAL95434.1;Note=FUNCTION:BioC is involved in an early%2C but chemically unexplored%2C step in the conversion of pimelic acid to biotin. PATHWAY:Biotin biosynthesis. SIMILARITY:Belongs to the methyltransferase superfamily TREMBL:Q7NPW6 - 46%25 identity%2C61%25 similarity to Chromobacterium bioC. TREMBL:Q82SL9 InterPro (IPR000051): SAM (and some other nucleotide) binding motif. Pfam (PF01209): ubiE/COQ5 methyltransferase family.%3B~Family membership;gbkey=CDS;gene=bioC2;product=putative biotin synthesis protein;protein_id=CAL95434.1;transl_table=11
AM406670.1	EMBL	gene	3098555	3099211	.	+	.	ID=gene2869;Name=ssm;gbkey=Gene;gene=ssm;gene_biotype=protein_coding;locus_tag=azo2819
AM406670.1	EMBL	CDS	3098555	3099211	.	+	0	ID=cds2816;Parent=gene2869;Dbxref=EnsemblGenomes-Gn:azo2819,EnsemblGenomes-Tr:CAL95435,GOA:A1K9D0,InterPro:IPR006439,InterPro:IPR010237,InterPro:IPR023214,UniProtKB/TrEMBL:A1K9D0,NCBI_GP:CAL95435.1;Name=CAL95435.1;Note=TREMBL:Q7NQN9: 48%25 identity%3B 66%25 similarity SPROT:P53078: 28%25 identity%2C 47%25 similarity InterPro :IPR006402%3B HAD-SF-IA-v3. IPR005833: Hlgnase/hydrlase. IPR005834: Hydrolase. IPR010237%3B Pyr-5-nucltdase. Pfam PF00702%3B Hydrolase%3B 1. PRINTS PR00413%3B HADHALOGNASE. TIGRFAMs TIGR01509%3B HAD-SF-IA-v3%3B 1. TIGR01993%3B Pyr-5-nucltdase%3B SSM1 protein. No signal peptide. No transmembrane helices. Could be an enzyme that inactivates 6-azauracil by modifying it. InterPro: Haloacid dehalogenase/epoxide hydrolase family otsB: trehalose-phosphatase%3B~Family membership;gbkey=CDS;gene=ssm;product=putative hydrolase;protein_id=CAL95435.1;transl_table=11
AM406670.1	EMBL	gene	3099203	3099697	.	-	.	ID=gene2870;Name=azo2820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2820
AM406670.1	EMBL	CDS	3099203	3099697	.	-	0	ID=cds2817;Parent=gene2870;Dbxref=EnsemblGenomes-Gn:azo2820,EnsemblGenomes-Tr:CAL95436,GOA:A1K9D1,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:A1K9D1,NCBI_GP:CAL95436.1;Name=CAL95436.1;Note=Putative acetyltransferase%2C42%25 identity to TrEMBL%3BQ7WFK1%2C Putative acetyltransferase [BB4270] [Bordetella bronchiseptica(Alcaligenes bronchisepticus)]. Has PF00583:IPR000182%3BAcetyltransferase (GNAT) family%3BThis family contains proteins with N-acetyltransferase functions.Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs)%2C which catalyze the transfer of an acetyl group from acetyl-CoA to the lysine E -amino groups on the N-terminal tails of histones. Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin%2C histones tend to be hyperacetylated%2C whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families.;gbkey=CDS;product=putative acetyltransferase;protein_id=CAL95436.1;transl_table=11
AM406670.1	EMBL	gene	3099739	3100743	.	-	.	ID=gene2871;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;locus_tag=azo2821
AM406670.1	EMBL	CDS	3099739	3100743	.	-	0	ID=cds2818;Parent=gene2871;Dbxref=EnsemblGenomes-Gn:azo2821,EnsemblGenomes-Tr:CAL95437,GOA:A1K9D2,InterPro:IPR001731,InterPro:IPR013785,UniProtKB/TrEMBL:A1K9D2,NCBI_GP:CAL95437.1;Name=CAL95437.1;Note=Delta-aminolevulinic acid dehydratase chloroplast precursor (ALADH) (ALAD). InterPro: Delta-aminolevulinic acid dehydratase%3B~High confidence in function and specificity;gbkey=CDS;gene=hemB;product=porphobilinogen synthase;protein_id=CAL95437.1;transl_table=11
AM406670.1	EMBL	gene	3100989	3101618	.	-	.	ID=gene2872;Name=engB;gbkey=Gene;gene=engB;gene_biotype=protein_coding;locus_tag=azo2822
AM406670.1	EMBL	CDS	3100989	3101618	.	-	0	ID=cds2819;Parent=gene2872;Dbxref=EnsemblGenomes-Gn:azo2822,EnsemblGenomes-Tr:CAL95438,GOA:A1K9D3,InterPro:IPR006073,InterPro:IPR019987,InterPro:IPR027417,NCBI_GP:CAL95438.1;Name=CAL95438.1;Note=Conserved hypothetical GTP-binding protein. Homology to engB of C. violaceum of 57%25 (trembl|Q7NPV7). Necessary for normal cell division and for the maintenance of normal septation (By similarity). no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;gene=engB;product=conserved hypothetical GTP-binding protein;protein_id=CAL95438.1;transl_table=11
AM406670.1	EMBL	gene	3101743	3102369	.	+	.	ID=gene2873;Name=cc42;gbkey=Gene;gene=cc42;gene_biotype=protein_coding;locus_tag=azo2823
AM406670.1	EMBL	CDS	3101743	3102369	.	+	0	ID=cds2820;Parent=gene2873;Dbxref=EnsemblGenomes-Gn:azo2823,EnsemblGenomes-Tr:CAL95439,GOA:A1K9D4,InterPro:IPR003088,InterPro:IPR009056,InterPro:IPR024167,UniProtKB/TrEMBL:A1K9D4,NCBI_GP:CAL95439.1;Name=CAL95439.1;Note=Probable cytochrome c4. Homology to cc4 of A. vinelandii of 42%25 (sprot|CYC4_AZOVI). Diheme%2C high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems. Pfam: cytochrome C signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=cc42;product=probable cytochrome C4;protein_id=CAL95439.1;transl_table=11
AM406670.1	EMBL	gene	3102434	3103303	.	-	.	ID=gene2874;Name=azo2824;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2824
AM406670.1	EMBL	CDS	3102434	3103303	.	-	0	ID=cds2821;Parent=gene2874;Dbxref=EnsemblGenomes-Gn:azo2824,EnsemblGenomes-Tr:CAL95440,InterPro:IPR007402,InterPro:IPR009078,InterPro:IPR011197,UniProtKB/TrEMBL:A1K9D5,NCBI_GP:CAL95440.1;Name=CAL95440.1;Note=Hypothetical protein%2C 51%25 identity (59%25 similarity) to TrEMBL%3BQ8Y0B0. TrEMBL%3B Q7NWN1(53%25 identity). Has PF04305%2C Protein of unknown function (DUF455).IPR007402. Has no signal Peptide or TMH present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95440.1;transl_table=11
AM406670.1	EMBL	gene	3103351	3104595	.	+	.	ID=gene2875;Name=moeA2;gbkey=Gene;gene=moeA2;gene_biotype=protein_coding;locus_tag=azo2825
AM406670.1	EMBL	CDS	3103351	3104595	.	+	0	ID=cds2822;Parent=gene2875;Dbxref=EnsemblGenomes-Gn:azo2825,EnsemblGenomes-Tr:CAL95441,GOA:A1K9D6,InterPro:IPR001453,InterPro:IPR005110,InterPro:IPR005111,InterPro:IPR020817,UniProtKB/TrEMBL:A1K9D6,NCBI_GP:CAL95441.1;Name=CAL95441.1;Note=Molybdopterin biosynthesis protein moeA. Involved in the biosynthesis of a demolybdo-cofactor (molybdopterin) necessary for molybdo-enzymes. Seems to be involved in a step of activation of molybdenum in the form of thiomolybdenum. InterPro: Molybdenum cofactor biosynthesis protein molyb_syn: molybdenum cofactor synthesis%3B~High confidence in function and specificity;gbkey=CDS;gene=moeA2;product=molybdopterin biosynthesis protein;protein_id=CAL95441.1;transl_table=11
AM406670.1	EMBL	gene	3104643	3105311	.	+	.	ID=gene2876;Name=rpiA;gbkey=Gene;gene=rpiA;gene_biotype=protein_coding;locus_tag=azo2826
AM406670.1	EMBL	CDS	3104643	3105311	.	+	0	ID=cds2823;Parent=gene2876;Dbxref=EnsemblGenomes-Gn:azo2826,EnsemblGenomes-Tr:CAL95442,GOA:A1K9D7,InterPro:IPR004788,InterPro:IPR020672,NCBI_GP:CAL95442.1;Name=CAL95442.1;Note=Ribose 5-phosphate isomerase A (Phosphoriboisomerase A)(PRI). Involved in the nonoxidative branch of the pentose phosphate pathway.Catalytic activity: D-ribose 5-phosphate %3D D-ribulose 5-phosphate. 60%25 RpiA. Pfam:PF06026%3B Rib_5-P_isom_A%3B 1. TIGRFAMs:TIGR00021%3B rpiA%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpiA;product=putative ribose 5-phosphate isomerase;protein_id=CAL95442.1;transl_table=11
AM406670.1	EMBL	gene	3105356	3106069	.	+	.	ID=gene2877;Name=phoU;gbkey=Gene;gene=phoU;gene_biotype=protein_coding;locus_tag=azo2827
AM406670.1	EMBL	CDS	3105356	3106069	.	+	0	ID=cds2824;Parent=gene2877;Dbxref=EnsemblGenomes-Gn:azo2827,EnsemblGenomes-Tr:CAL95443,GOA:A1K9D8,InterPro:IPR026022,InterPro:IPR028366,UniProtKB/TrEMBL:A1K9D8,NCBI_GP:CAL95443.1;Name=CAL95443.1;Note=Phosphate transport system protein phoU. Probably involved in phosphate transport and metabolism. In P aeruginosa PhoU is involved in the regulation of alkaline phosphatase expression and in the induction of Pi taxis.%3B~High confidence in function and specificity;gbkey=CDS;gene=phoU;product=phosphate uptake regulator probably;protein_id=CAL95443.1;transl_table=11
AM406670.1	EMBL	gene	3106151	3106423	.	-	.	ID=gene2878;Name=azo2828;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2828
AM406670.1	EMBL	CDS	3106151	3106423	.	-	0	ID=cds2825;Parent=gene2878;Dbxref=EnsemblGenomes-Gn:azo2828,EnsemblGenomes-Tr:CAL95444,GOA:A1K9D9,InterPro:IPR007457,NCBI_GP:CAL95444.1;Name=CAL95444.1;Note=Hpyothetical Protein%2C 69%25 identity (84%25 simialarity) to SwissProt%3B Q8Y010. Has PF04362%2C Protein of unknown function (DUF495)%3BIPR007457%3BMethionine start codon is known to be cleaved from Escherichia coli protein YggX (P52065). YggX is also known to be highly abundant in E. coli K-12. No Signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95444.1;transl_table=11
AM406670.1	EMBL	gene	3106427	3108166	.	-	.	ID=gene2879;Name=azo2829;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2829
AM406670.1	EMBL	CDS	3106427	3108166	.	-	0	ID=cds2826;Parent=gene2879;Dbxref=EnsemblGenomes-Gn:azo2829,EnsemblGenomes-Tr:CAL95445,GOA:A1K9E0,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR013655,InterPro:IPR029787,UniProtKB/TrEMBL:A1K9E0,NCBI_GP:CAL95445.1;Name=CAL95445.1;Note=GGDEF/PAS/PAC-domain containing protein;gbkey=CDS;product=GGDEF/PAS/PAC-domain containing protein;protein_id=CAL95445.1;transl_table=11
AM406670.1	EMBL	gene	3108245	3109603	.	-	.	ID=gene2880;Name=argA;gbkey=Gene;gene=argA;gene_biotype=protein_coding;locus_tag=azo2830
AM406670.1	EMBL	CDS	3108245	3109603	.	-	0	ID=cds2827;Parent=gene2880;Dbxref=EnsemblGenomes-Gn:azo2830,EnsemblGenomes-Tr:CAL95446,GOA:A1K9E1,InterPro:IPR000182,InterPro:IPR001048,InterPro:IPR010167,InterPro:IPR016181,UniProtKB/TrEMBL:A1K9E1,NCBI_GP:CAL95446.1;Name=CAL95446.1;Note=Amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the 'acetylated' ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate. Similar to sprot|ARGA_YERPE (44%25) and to sprot|ARGA_ECOLI (43%25). Pfam (PF00696): Aspartokinase superfamily Pfam (PF00583): GCN5-related N-acetyltransferase%3B~Specificity unclear;gbkey=CDS;gene=argA;product=probable amino-acid N-acetyltransferase;protein_id=CAL95446.1;transl_table=11
AM406670.1	EMBL	gene	3109740	3111248	.	-	.	ID=gene2881;Name=azo2831;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2831
AM406670.1	EMBL	CDS	3109740	3111248	.	-	0	ID=cds2828;Parent=gene2881;Dbxref=EnsemblGenomes-Gn:azo2831,EnsemblGenomes-Tr:CAL95447,GOA:A1K9E2,InterPro:IPR022488,InterPro:IPR022489,InterPro:IPR027417,UniProtKB/TrEMBL:A1K9E2,NCBI_GP:CAL95447.1;Name=CAL95447.1;Note=Hypothetical protein%2C 53%25 identity (69%25 similarity) to TrEMBL%3BQ7NQR2. TREMBL%3BQ74F81. Has 2 copies of PF03976%2CIPR005660%2C Domain of unknown function (DUF344)%3BThis presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs that are probably functionally important. No Signal Peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95447.1;transl_table=11
AM406670.1	EMBL	gene	3111292	3112023	.	-	.	ID=gene2882;Name=azo2832;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2832
AM406670.1	EMBL	CDS	3111292	3112023	.	-	0	ID=cds2829;Parent=gene2882;Dbxref=EnsemblGenomes-Gn:azo2832,EnsemblGenomes-Tr:CAL95448,GOA:A1K9E3,InterPro:IPR006700,InterPro:IPR015947,InterPro:IPR029026,InterPro:IPR029028,UniProtKB/TrEMBL:A1K9E3,NCBI_GP:CAL95448.1;Name=CAL95448.1;Note=Conserved hypothetical protein. Homology to BPP1163 of B.parapertussis of 50%25 (trembl:Q7WB46). Has PF04452%2CProtein of unknown function (DUF558)%3BIPR006700:Bacterial protein of unknown function%2C occasionally found adjacent to the diacylglycerol kinase catalytic domain DAGKc. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95448.1;transl_table=11
AM406670.1	EMBL	gene	3112072	3112881	.	+	.	ID=gene2883;Name=suhB2;gbkey=Gene;gene=suhB2;gene_biotype=protein_coding;locus_tag=azo2833
AM406670.1	EMBL	CDS	3112072	3112881	.	+	0	ID=cds2830;Parent=gene2883;Dbxref=EnsemblGenomes-Gn:azo2833,EnsemblGenomes-Tr:CAL95449,GOA:A1K9E4,InterPro:IPR000760,InterPro:IPR020550,InterPro:IPR020583,UniProtKB/TrEMBL:A1K9E4,NCBI_GP:CAL95449.1;Name=CAL95449.1;Note=Inositol-1-monophosphatase(IMPase)(Inositol-1-phosphatase)(I-1-Pase).May act by enhancing the synthesis or degradation of phosphorylated messenger molecules. Catalytic activity: myo-inositol 1-phosphate + h(2)o %3D myo-inositol + phosphate. 36%25 Inositol_P. Pfam:PF00459%3B Inositol_P%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=suhB2;product=putative Inositol-1-monophosphatase;protein_id=CAL95449.1;transl_table=11
AM406670.1	EMBL	gene	3112954	3113214	.	+	.	ID=gene2884;Name=azo2834;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2834
AM406670.1	EMBL	CDS	3112954	3113214	.	+	0	ID=cds2831;Parent=gene2884;Dbxref=EnsemblGenomes-Gn:azo2834,EnsemblGenomes-Tr:CAL95450,UniProtKB/TrEMBL:A1K9E5,NCBI_GP:CAL95450.1;Name=CAL95450.1;Note=Hypothetical protein%2C has very weak homology with hits in the database. Has No domains%2C repeats%2C motifs or features could be predicted with confidence above threshold scores.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL95450.1;transl_table=11
AM406670.1	EMBL	gene	3113267	3114136	.	+	.	ID=gene2885;Name=prkB;gbkey=Gene;gene=prkB;gene_biotype=protein_coding;locus_tag=azo2835
AM406670.1	EMBL	CDS	3113267	3114136	.	+	0	ID=cds2832;Parent=gene2885;Dbxref=EnsemblGenomes-Gn:azo2835,EnsemblGenomes-Tr:CAL95451,GOA:A1K9E6,InterPro:IPR006082,InterPro:IPR006083,InterPro:IPR027417,UniProtKB/TrEMBL:A1K9E6,NCBI_GP:CAL95451.1;Name=CAL95451.1;Note=Probable phosphoribulokinase. Homology to prkB of r. sphaeroides of 59%25 (sprot|KPP2_RHOSH). Phosphoribulokinase catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1%2C5-phosphate%2C a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms. InterPro: Phosphoribulokinase family (IPR006082) Pfam: Phosphoribulokinase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=prkB;product=probable phosphoribulokinase;protein_id=CAL95451.1;transl_table=11
AM406670.1	EMBL	gene	3114267	3116330	.	+	.	ID=gene2886;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=azo2836
AM406670.1	EMBL	CDS	3114267	3116330	.	+	0	ID=cds2833;Parent=gene2886;Dbxref=EnsemblGenomes-Gn:azo2836,EnsemblGenomes-Tr:CAL95452,GOA:A1K9E7,InterPro:IPR005474,InterPro:IPR005475,InterPro:IPR005476,InterPro:IPR005478,InterPro:IPR009014,InterPro:IPR020826,InterPro:IPR029061,UniProtKB/TrEMBL:A1K9E7,NCBI_GP:CAL95452.1;Name=CAL95452.1;Note=Transketolasecatalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor%2C such as ribose 5-phosphate%2C to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme%2C together with transaldolase%2C provides a link between the glycolytic and pentose-phosphate pathways. Tkt requires thiamine pyrophosphate as a cofactor. 60%25 BacTransketolase.IPR005476%3B Transketolase_C. IPR005475%3B Transketolase_CR.IPR005474%3B Transketolase_N. IPR009014%3B Transketo_C_like. Pfam:PF02780%3B Transketolase_C%3B 1.PF00456%3B Transketolase_N%3B 1. PF02779%3B Transket_pyr%3B 1. TIGRFAMs:TIGR00232%3B tktlase_bact%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=tkt;product=putative transketolase;protein_id=CAL95452.1;transl_table=11
AM406670.1	EMBL	gene	3116428	3117444	.	+	.	ID=gene2887;Name=gapA;gbkey=Gene;gene=gapA;gene_biotype=protein_coding;locus_tag=azo2837
AM406670.1	EMBL	CDS	3116428	3117444	.	+	0	ID=cds2834;Parent=gene2887;Dbxref=EnsemblGenomes-Gn:azo2837,EnsemblGenomes-Tr:CAL95453,GOA:A1K9E8,InterPro:IPR006424,InterPro:IPR016040,InterPro:IPR020828,InterPro:IPR020829,InterPro:IPR020830,InterPro:IPR020831,UniProtKB/TrEMBL:A1K9E8,NCBI_GP:CAL95453.1;Name=CAL95453.1;Note=Glyceraldehyde-3-phosphate dehydrogenase(GAPDH)plays an important role in glycolysis and gluconeogenesis by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1%2C3-diphospho-glycerate.61%25 GAPDH-I.IPR000173%3B GAP_dhdrogenase. Pfam:PF02800%3B Gp_dh_C%3B 1.PF00044%3B Gp_dh_N%3B 1. TIGRFAMs:TIGR01534%3B GAPDH-I%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=gapA;product=putative glyceraldehyde 3-phosphate dehydrogenase;protein_id=CAL95453.1;transl_table=11
AM406670.1	EMBL	gene	3117462	3117929	.	+	.	ID=gene2888;Name=azo2838;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2838
AM406670.1	EMBL	CDS	3117462	3117929	.	+	0	ID=cds2835;Parent=gene2888;Dbxref=EnsemblGenomes-Gn:azo2838,EnsemblGenomes-Tr:CAL95454,UniProtKB/TrEMBL:A1K9E9,NCBI_GP:CAL95454.1;Name=CAL95454.1;Note=Conserved hypothetical secreted protein. Homology to xcc3191 of X. campestris of 41%25 (trembl|Q8P5Z1). no domains predicted. signal peptide. no TMHs.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95454.1;transl_table=11
AM406670.1	EMBL	gene	3118003	3119187	.	+	.	ID=gene2889;Name=pgk;gbkey=Gene;gene=pgk;gene_biotype=protein_coding;locus_tag=azo2839
AM406670.1	EMBL	CDS	3118003	3119187	.	+	0	ID=cds2836;Parent=gene2889;Dbxref=EnsemblGenomes-Gn:azo2839,EnsemblGenomes-Tr:CAL95455,GOA:A1K9F0,InterPro:IPR001576,InterPro:IPR015824,InterPro:IPR015901,InterPro:IPR015911,NCBI_GP:CAL95455.1;Name=CAL95455.1;Note=Phosphoglycerate kinaseis an enzyme that catalyses the formation of ATP to ADP and viceversa. In the second step of the second phase in glycolysis%2C 1%2C3-diphosphoglycerate is converted to 3-phosphoglycerate%2Cforming one molecule of ATP. If the reverse were to occur%2Cone molecule of ADP would be formed. 59%25 PGK. Pfam:PF00162%3B PGK%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=pgk;product=putative phosphoglycerate kinase;protein_id=CAL95455.1;transl_table=11
AM406670.1	EMBL	gene	3119266	3119676	.	-	.	ID=gene2890;Name=azo2840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2840
AM406670.1	EMBL	CDS	3119266	3119676	.	-	0	ID=cds2837;Parent=gene2890;Dbxref=EnsemblGenomes-Gn:azo2840,EnsemblGenomes-Tr:CAL95456,UniProtKB/TrEMBL:A1K9F1,NCBI_GP:CAL95456.1;Name=CAL95456.1;Note=Hypothetical secreted protein. No good homology to the data bank. No domains predicted. Signal peptide reported to be present. No TMH reported present. ssl1: transcription factor ssl1;gbkey=CDS;product=putative secreted protein;protein_id=CAL95456.1;transl_table=11
AM406670.1	EMBL	gene	3119803	3120210	.	-	.	ID=gene2891;Name=azo2841;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2841
AM406670.1	EMBL	CDS	3119803	3120210	.	-	0	ID=cds2838;Parent=gene2891;Dbxref=EnsemblGenomes-Gn:azo2841,EnsemblGenomes-Tr:CAL95457,UniProtKB/TrEMBL:A1K9F2,NCBI_GP:CAL95457.1;Name=CAL95457.1;Note=Conserved hypothetical membrane protein. Homology to an orf of the uncultured bacterium 463 of 33%25 (tremblnew|AAS07979). no domains predicted. no signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95457.1;transl_table=11
AM406670.1	EMBL	gene	3120337	3121779	.	+	.	ID=gene2892;Name=pykA;gbkey=Gene;gene=pykA;gene_biotype=protein_coding;locus_tag=azo2842
AM406670.1	EMBL	CDS	3120337	3121779	.	+	0	ID=cds2839;Parent=gene2892;Dbxref=EnsemblGenomes-Gn:azo2842,EnsemblGenomes-Tr:CAL95458,GOA:A1K9F3,InterPro:IPR001697,InterPro:IPR011037,InterPro:IPR015793,InterPro:IPR015794,InterPro:IPR015795,InterPro:IPR015806,InterPro:IPR015813,InterPro:IPR018209,UniProtKB/TrEMBL:A1K9F3,NCBI_GP:CAL95458.1;Name=CAL95458.1;Note=Pyruvate kinase (PK) catalyses the final step in glycolysis%2C the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP:ADP + phosphoenolpyruvate %3D ATP + pyruvate. 52%25 Pyruvate_kinase. Pfam:PF00224%3B PK%3B 1.PF02887%3B PK_C%3B 1. TIGRFAMs:TIGR01064%3B pyruv_kin%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=pykA;product=putative pyruvate kinase;protein_id=CAL95458.1;transl_table=11
AM406670.1	EMBL	gene	3121901	3122965	.	+	.	ID=gene2893;Name=fba;gbkey=Gene;gene=fba;gene_biotype=protein_coding;locus_tag=azo2843
AM406670.1	EMBL	CDS	3121901	3122965	.	+	0	ID=cds2840;Parent=gene2893;Dbxref=EnsemblGenomes-Gn:azo2843,EnsemblGenomes-Tr:CAL95459,GOA:A1K9F4,InterPro:IPR000771,InterPro:IPR006412,InterPro:IPR013785,UniProtKB/TrEMBL:A1K9F4,NCBI_GP:CAL95459.1;Name=CAL95459.1;Note=Fructose-bisphosphate aldolase is a glycolytic enzyme that catalyzes the reversible aldol cleavage or condensation of fructose-1%2C6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. 77%25 Fruct_bisP_Calv.IPR000771%3B K_bP_aldolase. Pfam:PF01116%3B F_bP_aldolase%3B 1. TIGRFAMs:TIGR00167%3B cbbA%3B 1.TIGR01521%3B FruBisAldo_II_B%3B 1. TIGR01859%3B fruc_bis_ald_%3B 1.TIGR01858%3B tag_bisphos_ald%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=fba;product=putative fructose-bisphosphate aldolase;protein_id=CAL95459.1;transl_table=11
AM406670.1	EMBL	gene	3123031	3125097	.	-	.	ID=gene2894;Name=exaA1;gbkey=Gene;gene=exaA1;gene_biotype=protein_coding;locus_tag=azo2844
AM406670.1	EMBL	CDS	3123031	3125097	.	-	0	ID=cds2841;Parent=gene2894;Dbxref=EnsemblGenomes-Gn:azo2844,EnsemblGenomes-Tr:CAL95460,GOA:A1K9F5,InterPro:IPR001479,InterPro:IPR002372,InterPro:IPR009056,InterPro:IPR011047,InterPro:IPR017512,InterPro:IPR018391,InterPro:IPR027295,UniProtKB/TrEMBL:A1K9F5,NCBI_GP:CAL95460.1;Name=CAL95460.1;Note=Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol%2C but not highly active on methanol. 73%25 Bac_PQQ.IPR002372%3B Bac_PQQ_repeat. Pfam:PF01011%3B PQQ%3B 2. Signal peptide:present.%3B~High confidence in function and specificity;gbkey=CDS;gene=exaA1;product=putative quinoprotein ethanol dehydrogenase;protein_id=CAL95460.1;transl_table=11
AM406670.1	EMBL	gene	3125178	3126107	.	-	.	ID=gene2895;Name=qbdB2;gbkey=Gene;gene=qbdB2;gene_biotype=protein_coding;locus_tag=azo2845
AM406670.1	EMBL	CDS	3125178	3126107	.	-	0	ID=cds2842;Parent=gene2895;Dbxref=EnsemblGenomes-Gn:azo2845,EnsemblGenomes-Tr:CAL95461,InterPro:IPR025737,UniProtKB/TrEMBL:A1K9F6,NCBI_GP:CAL95461.1;Name=CAL95461.1;Note=Conserved hypothetical secreted protein. Homology to qbdB of Pseudomonas putida of 56%25 (gi|22779360|dbj|BAC15558.1|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide present.%2C%3B~Conserved hypothetical protein;gbkey=CDS;gene=qbdB2;product=conserved hypothetical secreted protein;protein_id=CAL95461.1;transl_table=11
AM406670.1	EMBL	gene	3126355	3128244	.	+	.	ID=gene2896;Name=azo2846;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2846
AM406670.1	EMBL	CDS	3126355	3128244	.	+	0	ID=cds2843;Parent=gene2896;Dbxref=EnsemblGenomes-Gn:azo2846,EnsemblGenomes-Tr:CAL95462,GOA:A1K9F7,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR027417,InterPro:IPR029016,UniProtKB/TrEMBL:A1K9F7,NCBI_GP:CAL95462.1;Name=CAL95462.1;Note=Similar to TREMBL:Q9F9U3 (44%25 identity)%3B TREMBL:Q88H93 (39%25 identity)%3B SWISSPROT:P28614 (35%25 identity). InterPro (IPR002078): Sigma-54 factor interaction domain. InterPro (IPR002197): Helix-turn-helix%2C Fis-type. InterPro (IPR003593): AAA ATPase. Pfam (PF02954): Bacterial regulatory protein%2C Fis family. Pfam (PF00158): Sigma-54 interaction domain. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;product=Sigma-54-dependent transcriptional regulator;protein_id=CAL95462.1;transl_table=11
AM406670.1	EMBL	gene	3128356	3129030	.	+	.	ID=gene2897;Name=azo2847;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2847
AM406670.1	EMBL	CDS	3128356	3129030	.	+	0	ID=cds2844;Parent=gene2897;Dbxref=EnsemblGenomes-Gn:azo2847,EnsemblGenomes-Tr:CAL95463,UniProtKB/TrEMBL:A1K9F8,NCBI_GP:CAL95463.1;Name=CAL95463.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95463.1;transl_table=11
AM406670.1	EMBL	gene	3129035	3129451	.	+	.	ID=gene2898;Name=azo2848;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2848
AM406670.1	EMBL	CDS	3129035	3129451	.	+	0	ID=cds2845;Parent=gene2898;Dbxref=EnsemblGenomes-Gn:azo2848,EnsemblGenomes-Tr:CAL95464,InterPro:IPR009288,InterPro:IPR013024,UniProtKB/TrEMBL:A1K9F9,NCBI_GP:CAL95464.1;Name=CAL95464.1;Note=Putative AIG2-like protein. Homology to AIG2 of a. thaliana of 27%25 (sprot|AIG2_ARATH) AIG2 is an Arabidopsis proteins that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. Pfam: AIG2-like family singal peptide no TMHs;gbkey=CDS;product=putative AIG2-like protein;protein_id=CAL95464.1;transl_table=11
AM406670.1	EMBL	gene	3129466	3131328	.	-	.	ID=gene2899;Name=azo2849;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2849
AM406670.1	EMBL	CDS	3129466	3131328	.	-	0	ID=cds2846;Parent=gene2899;Dbxref=EnsemblGenomes-Gn:azo2849,EnsemblGenomes-Tr:CAL95465,GOA:A1K9G0,InterPro:IPR000160,InterPro:IPR003660,InterPro:IPR029787,UniProtKB/TrEMBL:A1K9G0,NCBI_GP:CAL95465.1;Name=CAL95465.1;Note=Conserved hypothetical membrane protein. Homology to AQ_563 of Aquifex aeolicus of 37%25 (trembl|O66835(SRS)). Has IPR003660%3BPF00672%3BHAMP domain:This domain is known as the HAMP domain for histidine kinases%2C adenylyl cyclases%2Cmethyl binding proteins and phosphatases. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. Has IPR000160(GGDEF)domain%2Cthis domain is found linked to a wide range of non-homologous domains in a variety of bacteria. The function of this domain is unknown%2C however it has been shown to be homologous to the adenylyl cyclase catalytic domain. This prediction correlates with the functional information available on two GGDEF-containing proteins%2C namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum%2C both of which regulate the turnover of cyclic diguanosine monophosphate. TMHMM reporting 1 TMH present. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95465.1;transl_table=11
AM406670.1	EMBL	gene	3131436	3133073	.	-	.	ID=gene2900;Name=azo2850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2850
AM406670.1	EMBL	CDS	3131436	3133073	.	-	0	ID=cds2847;Parent=gene2900;Dbxref=EnsemblGenomes-Gn:azo2850,EnsemblGenomes-Tr:CAL95466,GOA:A1K9G1,InterPro:IPR005828,InterPro:IPR005829,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K9G1,NCBI_GP:CAL95466.1;Name=CAL95466.1;Note=Proline/betaine transporter (Proline porter II) (PPII). STRETCH-INACTIVATED PROLINE/BETAINE TRANSPORTER. PROP IS BOTH AN OSMOSENSOR AND AN OSMOREGULATOR WHICH IS AVAILABLE TO PARTICIPATE EARLY IN THE BACTERIAL OSMOREGULATORY RESPONSE. MEDIATES THE ACTIVE ACCUMULATION OF SOLUTES SUCH AS PROLINE GLYCINE BETAINE STACHYDRINE PIPECOLIC ACID ECTOINE AND TAURINE.PROBABLE MtbA PROTEIN 2A0106: citrate-proton symport%3B~Specificity unclear;gbkey=CDS;product=putative sugar transport protein;protein_id=CAL95466.1;transl_table=11
AM406670.1	EMBL	gene	3133259	3134608	.	+	.	ID=gene2901;Name=azo2851;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2851
AM406670.1	EMBL	CDS	3133259	3134608	.	+	0	ID=cds2848;Parent=gene2901;Dbxref=EnsemblGenomes-Gn:azo2851,EnsemblGenomes-Tr:CAL95467,GOA:A1K9G2,InterPro:IPR004129,InterPro:IPR017946,UniProtKB/TrEMBL:A1K9G2,NCBI_GP:CAL95467.1;Name=CAL95467.1;Note=Conserved hypothetical glycerophosphoryl diester phosphodiesterase. Homology to TdenA01001091 of Thiobacillus denitrificans of 66%25 (gnl|keqq|mca:MCA1922(KEGG)).InterPro: Glycerophosphoryl diester phosphodiesterase (IPR004129). Pfam: Glycerophosphoryl diester phosphodiesterase. signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical glycerophosphoryl diester phosphodiesterase;protein_id=CAL95467.1;transl_table=11
AM406670.1	EMBL	gene	3134727	3136160	.	-	.	ID=gene2902;Name=cddD;gbkey=Gene;gene=cddD;gene_biotype=protein_coding;locus_tag=azo2852
AM406670.1	EMBL	CDS	3134727	3136160	.	-	0	ID=cds2849;Parent=gene2902;Dbxref=EnsemblGenomes-Gn:azo2852,EnsemblGenomes-Tr:CAL95468,GOA:A1K9G3,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR029510,UniProtKB/TrEMBL:A1K9G3,NCBI_GP:CAL95468.1;Name=CAL95468.1;Note=Probable aldehyde dehydrogenase (NAD+). Homology to cddD of R. ruber SC1 of 59%25 (trembl|Q938F1) Aldehyde dehydrogenases are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. Pfam: Aldehyde dehydrogenase family no TMHs no signal peptide%3B~Family membership;gbkey=CDS;gene=cddD;product=probable aldehyde dehydrogenase (NAD+);protein_id=CAL95468.1;transl_table=11
AM406670.1	EMBL	gene	3136366	3136650	.	+	.	ID=gene2903;Name=azo2853;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2853
AM406670.1	EMBL	CDS	3136366	3136650	.	+	0	ID=cds2850;Parent=gene2903;Dbxref=EnsemblGenomes-Gn:azo2853,EnsemblGenomes-Tr:CAL95469,UniProtKB/TrEMBL:A1K9G4,NCBI_GP:CAL95469.1;Name=CAL95469.1;Note=Conserved hypothetical secreted protein. Homology to PA3284 of Pseudomonas aeruginosa of 40%25 (trembl|Q9HYV9(SRS)). No domains predicted. Signal peptide present. No TMH Present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95469.1;transl_table=11
AM406670.1	EMBL	gene	3136724	3137569	.	+	.	ID=gene2904;Name=azo2854;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2854
AM406670.1	EMBL	CDS	3136724	3137569	.	+	0	ID=cds2851;Parent=gene2904;Dbxref=EnsemblGenomes-Gn:azo2854,EnsemblGenomes-Tr:CAL95470,InterPro:IPR007801,InterPro:IPR013022,UniProtKB/TrEMBL:A1K9G5,NCBI_GP:CAL95470.1;Name=CAL95470.1;Note=Conserved hypothetical protein. Homology to PA3283 of P.aeruginosa of 54%25 (trembl:Q9HYW0). Has PF05114%2CProtein of unknown function (DUF692)%3BIPR007801:This family consists of several uncharacterised bacterial proteins. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95470.1;transl_table=11
AM406670.1	EMBL	gene	3137566	3138312	.	+	.	ID=gene2905;Name=azo2855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2855
AM406670.1	EMBL	CDS	3137566	3138312	.	+	0	ID=cds2852;Parent=gene2905;Dbxref=EnsemblGenomes-Gn:azo2855,EnsemblGenomes-Tr:CAL95471,InterPro:IPR018640,UniProtKB/TrEMBL:A1K9G6,NCBI_GP:CAL95471.1;Name=CAL95471.1;Note=Conserved hypothetical protein. Homology to PP2399 of P.putida of 36%25 (trembl:Q88K92). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95471.1;transl_table=11
AM406670.1	EMBL	gene	3138309	3138881	.	+	.	ID=gene2906;Name=azo2856;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2856
AM406670.1	EMBL	CDS	3138309	3138881	.	+	0	ID=cds2853;Parent=gene2906;Dbxref=EnsemblGenomes-Gn:azo2856,EnsemblGenomes-Tr:CAL95472,InterPro:IPR011637,UniProtKB/TrEMBL:A1K9G7,NCBI_GP:CAL95472.1;Name=CAL95472.1;Note=Conserved hypothetical membrane protein. Homology to PA4104 of Pseudomonas aeruginosa of 46%25 (trembl|Q9HWS4(SRS)). No domains predictec. no signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95472.1;transl_table=11
AM406670.1	EMBL	gene	3138878	3139468	.	+	.	ID=gene2907;Name=sigX;gbkey=Gene;gene=sigX;gene_biotype=protein_coding;locus_tag=azo2857
AM406670.1	EMBL	CDS	3138878	3139468	.	+	0	ID=cds2854;Parent=gene2907;Dbxref=EnsemblGenomes-Gn:azo2857,EnsemblGenomes-Tr:CAL95473,GOA:A1K9G8,InterPro:IPR007627,InterPro:IPR011991,InterPro:IPR013249,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,InterPro:IPR014289,UniProtKB/TrEMBL:A1K9G8,NCBI_GP:CAL95473.1;Name=CAL95473.1;Note=Putative RNA polymerase sigma factor%2C Myxococcus xanthus carQ%3B Alcaligenes eutrophus plasmid pMOL28-encoded cnrH%3B Escherichia coli fecI%3B Pseudomonas syringae hrpL%3B rpoE from Escherichia coli%2C Salmonella typhimurium and Haemophilus influenzae%3B Streptomyces coelicolor sigE%3B and Bacillus subtilis sigma factors sigV%2C sigX%2C sigY and sigZ.%3B~High confidence in function and specificity;gbkey=CDS;gene=sigX;product=putative RNA polymerase sigma factor;protein_id=CAL95473.1;transl_table=11
AM406670.1	EMBL	gene	3139462	3139650	.	+	.	ID=gene2908;Name=azo2858;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2858
AM406670.1	EMBL	CDS	3139462	3139650	.	+	0	ID=cds2855;Parent=gene2908;Dbxref=EnsemblGenomes-Gn:azo2858,EnsemblGenomes-Tr:CAL95474,InterPro:IPR027383,UniProtKB/TrEMBL:A1K9G9,NCBI_GP:CAL95474.1;Name=CAL95474.1;Note=Conserved hypothetical protein. Homology to CV2972 of C.violaceum of 51%25 (trembl:Q7NTT1). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95474.1;transl_table=11
AM406670.1	EMBL	gene	3139801	3140484	.	+	.	ID=gene2909;Name=estB;gbkey=Gene;gene=estB;gene_biotype=protein_coding;locus_tag=azo2859
AM406670.1	EMBL	CDS	3139801	3140484	.	+	0	ID=cds2856;Parent=gene2909;Dbxref=EnsemblGenomes-Gn:azo2859,EnsemblGenomes-Tr:CAL95475,GOA:A1K9H0,InterPro:IPR003140,InterPro:IPR029058,UniProtKB/TrEMBL:A1K9H0,NCBI_GP:CAL95475.1;Name=CAL95475.1;Note=Probable carboxylesterase. Homology to estB of P. flourescens of 41%25 (sprot|EST2_PSEFL). Hydrolyzes carboxylic ester bonds with relatively broad substrate specificity. InterPro: Phospholipase/Carboxylesterase(IPR003140)%3B Esterase/lipase/ thioesterase family acitve site (IPR000379) Pfam: Phospolipase/Carboxylesterase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=estB;product=probable carboxylesterase;protein_id=CAL95475.1;transl_table=11
AM406670.1	EMBL	gene	3140490	3141521	.	-	.	ID=gene2910;Name=azo2860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2860
AM406670.1	EMBL	CDS	3140490	3141521	.	-	0	ID=cds2857;Parent=gene2910;Dbxref=EnsemblGenomes-Gn:azo2860,EnsemblGenomes-Tr:CAL95476,InterPro:IPR002035,InterPro:IPR024163,UniProtKB/TrEMBL:A1K9H1,NCBI_GP:CAL95476.1;Name=CAL95476.1;Note=Conserved hypothetical membrane protein. Homology to PJS6w01004232 of Polaromonas sp. JS666 of 53%25 (gi|54028976|ref|ZP_00361120.1|(NBCI ENTREZ)). InterPro:IPR002035%3B VWF_A. The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders. In von Willebrand factor%2C the type A domain (vWF) is the prototype for a protein superfamily. Pfam:PF00092%3B VWA%3B 1. SMART:SM00327%3B VWA%3B 1. PROSITE:PS50234%3B VWFA%3B MIP: MIP family channel proteins. No signal peptide present. No. of TMH's: 3 (TMHMM predicted).%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95476.1;transl_table=11
AM406670.1	EMBL	gene	3141518	3142456	.	-	.	ID=gene2911;Name=azo2861;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2861
AM406670.1	EMBL	CDS	3141518	3142456	.	-	0	ID=cds2858;Parent=gene2911;Dbxref=EnsemblGenomes-Gn:azo2861,EnsemblGenomes-Tr:CAL95477,InterPro:IPR002035,InterPro:IPR002881,UniProtKB/TrEMBL:A1K9H2,NCBI_GP:CAL95477.1;Name=CAL95477.1;Note=Hypothetical protein Rv1480/MT1527/Mb1516. TREMBL:Q7MUE8: 33%25 identity%2C 52%25 similarity. This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor%2C type A domain InterPro: IPR002881%3B DUF58. Pfam: PF01882%3B DUF58 Absence of transmembrane helices (TMHMM predicted) cmk: cytidylate kinase%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95477.1;transl_table=11
AM406670.1	EMBL	gene	3142431	3143453	.	-	.	ID=gene2912;Name=moxR2;gbkey=Gene;gene=moxR2;gene_biotype=protein_coding;locus_tag=azo2862
AM406670.1	EMBL	CDS	3142431	3143453	.	-	0	ID=cds2859;Parent=gene2912;Dbxref=EnsemblGenomes-Gn:azo2862,EnsemblGenomes-Tr:CAL95478,GOA:A1K9H3,InterPro:IPR011703,InterPro:IPR016366,InterPro:IPR027417,UniProtKB/TrEMBL:A1K9H3,NCBI_GP:CAL95478.1;Name=CAL95478.1;Note=MoxR protein (MxaR protein). MAY BE INVOLVED IN THE REGULATION OF FORMATION OF ACTIVE METHANOL DEHYDROGENASE. TREMBLnew:CAE55395: 54%25 identity%2C 71%25 similarity InterPro:IPR003593%3B AAA_ATPase. IPR000523%3B Mg_chelatse_chII. Pfam PF01078%3B Mg_chelatase%3B 1. SMART SM00382%3B AAA%3B 1 InterPro IPR003593%3B AAA_ATPas ruvB: Holliday junction DNA helicase Ru%3B~High confidence in function and specificity;gbkey=CDS;gene=moxR2;product=MoxR protein%2C putative;protein_id=CAL95478.1;transl_table=11
AM406670.1	EMBL	gene	3143481	3144263	.	-	.	ID=gene2913;Name=azo2863;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2863
AM406670.1	EMBL	CDS	3143481	3144263	.	-	0	ID=cds2860;Parent=gene2913;Dbxref=EnsemblGenomes-Gn:azo2863,EnsemblGenomes-Tr:CAL95479,GOA:A1K9H4,InterPro:IPR001940,InterPro:IPR009003,UniProtKB/TrEMBL:A1K9H4,NCBI_GP:CAL95479.1;Name=CAL95479.1;Note=Conserved hypothetical serine protease. Homology to PJS6w01004229 of Polaromonas sp. JS666 of 53%25 (gi|54028973|ref|ZP_00361117.1|(NBCI ENTREZ)). Interpro: HtrA/DegQ protease family (IPR001940)%3B Serine protease%2Ctrypsine family (IPR001254). Pfam: Typsin. probable signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical serine protease;protein_id=CAL95479.1;transl_table=11
AM406670.1	EMBL	gene	3144672	3145691	.	+	.	ID=gene2914;Name=azo2864;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2864
AM406670.1	EMBL	CDS	3144672	3145691	.	+	0	ID=cds2861;Parent=gene2914;Dbxref=EnsemblGenomes-Gn:azo2864,EnsemblGenomes-Tr:CAL95480,InterPro:IPR002035,InterPro:IPR024163,UniProtKB/TrEMBL:A1K9H5,NCBI_GP:CAL95480.1;Name=CAL95480.1;Note=Conserved hypothetical membrane protein. TREMBL:Q9CBL9: 33%25 identity%3B 52%25 similarity The von Willebrand factor is a large multimeric glycoprotein found in bloodplasma. Mutant forms are involved in the aetiology of bleeding disorders. In von Willebrand factor%2C the type A domain (vWF) is the prototype for a protein superfamily Hypothetical protein MAV335. InterPro:IPR002035%3B VWF_A. Pfam:PF00092%3B VWA%3B 1. SMART:SM00327%3B VWA 2_A_01_02: Multidrug resistance protein Presence of Signal peptide (SignalP predicted) Presence of 3 transmembrane helices (TMHMM predicted).%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95480.1;transl_table=11
AM406670.1	EMBL	gene	3145796	3146101	.	+	.	ID=gene2915;Name=azo2865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2865
AM406670.1	EMBL	CDS	3145796	3146101	.	+	0	ID=cds2862;Parent=gene2915;Dbxref=EnsemblGenomes-Gn:azo2865,EnsemblGenomes-Tr:CAL95481,InterPro:IPR011008,InterPro:IPR014910,UniProtKB/TrEMBL:A1K9H6,NCBI_GP:CAL95481.1;Name=CAL95481.1;Note=Conserved hypothetical protein. Homology to CE0355 of C.efficiens of 56%25 (trembl:Q8FSM8). No domains predicted. No THs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95481.1;transl_table=11
AM406670.1	EMBL	gene	3146175	3147203	.	+	.	ID=gene2916;Name=azo2866;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2866
AM406670.1	EMBL	CDS	3146175	3147203	.	+	0	ID=cds2863;Parent=gene2916;Dbxref=EnsemblGenomes-Gn:azo2866,EnsemblGenomes-Tr:CAL95482,GOA:A1K9H7,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR001610,InterPro:IPR029787,UniProtKB/TrEMBL:A1K9H7,NCBI_GP:CAL95482.1;Name=CAL95482.1;Note=GGDEF/PAS/PAC-domain containing protein;gbkey=CDS;product=GGDEF/PAS/PAC-domain containing protein;protein_id=CAL95482.1;transl_table=11
AM406670.1	EMBL	gene	3147200	3148141	.	-	.	ID=gene2917;Name=azo2867;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2867
AM406670.1	EMBL	CDS	3147200	3148141	.	-	0	ID=cds2864;Parent=gene2917;Dbxref=EnsemblGenomes-Gn:azo2867,EnsemblGenomes-Tr:CAL95483,GOA:A1K9H8,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K9H8,NCBI_GP:CAL95483.1;Name=CAL95483.1;Note=Transcriptional regulator%2C LysR family This protein activates the transcription of the lysA gene encoding diaminopimelate decarboxylase. LysR is also a negative regulator of its own expression. 44%25 1 helixturnhelix PF03466 LysR_substrate%3B 1. HTH reporting nucleic acid binding motif%3B~Specificity unclear;gbkey=CDS;product=putative transcriptional regulator%2C LysR family;protein_id=CAL95483.1;transl_table=11
AM406670.1	EMBL	gene	3148259	3149065	.	+	.	ID=gene2918;Name=ygiD;gbkey=Gene;gene=ygiD;gene_biotype=protein_coding;locus_tag=azo2868
AM406670.1	EMBL	CDS	3148259	3149065	.	+	0	ID=cds2865;Parent=gene2918;Dbxref=EnsemblGenomes-Gn:azo2868,EnsemblGenomes-Tr:CAL95484,GOA:A1K9H9,InterPro:IPR004183,InterPro:IPR014436,UniProtKB/TrEMBL:A1K9H9,NCBI_GP:CAL95484.1;Name=CAL95484.1;Note=Putative cytoplasmic protein ygiD%2C 35%25 identity to TrEMBL%3BQ8ZLZ3. TrEMBL%3BQ8XBP3%2CQ83JK6. Has PF02900%2CCatalytic LigB subunit of aromatic ring-opening dioxygenase%3BIPR004183:The LigAB enzyme (a protocatechuate 4%2C5-dioxygenase)%2C of Sphingomonas paucimobilis oxidizes protocatechuate (or 3%2C4-dihydroxybenzoic acid%2C PCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family%2C which catalyzes the ring-opening reaction of protocatechuate and related compounds.%3B~Conserved hypothetical protein;gbkey=CDS;gene=ygiD;product=protocatechuate 4%2C5-dioxygenase;protein_id=CAL95484.1;transl_table=11
AM406670.1	EMBL	gene	3149082	3149636	.	+	.	ID=gene2919;Name=azo2869;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2869
AM406670.1	EMBL	CDS	3149082	3149636	.	+	0	ID=cds2866;Parent=gene2919;Dbxref=EnsemblGenomes-Gn:azo2869,EnsemblGenomes-Tr:CAL95485,GOA:A1K9I0,InterPro:IPR016174,UniProtKB/TrEMBL:A1K9I0,NCBI_GP:CAL95485.1;Name=CAL95485.1;Note=Conserved hypothetical cytochrome B561. Homology to cv3278 of C. violaceum of 69%25 (trembl|Q7NSZ1). Involved in electronen transport. no domains reported. no signal peptide. 4 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical cytochrome B561;protein_id=CAL95485.1;transl_table=11
AM406670.1	EMBL	gene	3149682	3150251	.	+	.	ID=gene2920;Name=azo2870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2870
AM406670.1	EMBL	CDS	3149682	3150251	.	+	0	ID=cds2867;Parent=gene2920;Dbxref=EnsemblGenomes-Gn:azo2870,EnsemblGenomes-Tr:CAL95486,InterPro:IPR007372,UniProtKB/TrEMBL:A1K9I1,NCBI_GP:CAL95486.1;Name=CAL95486.1;Note=Conserved hypothetical YceI like protein. Homology to CV3277 of C.violaceum of 51%25 (tremble:Q7NSZ2). Has PF04264%2C YceI like family%3B(IPR007372): E. coli YceI is a base-induced periplasmic protein. Its function has not yet been characterised. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical YceI like protein;protein_id=CAL95486.1;transl_table=11
AM406670.1	EMBL	gene	3150311	3150889	.	+	.	ID=gene2921;Name=azo2871;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2871
AM406670.1	EMBL	CDS	3150311	3150889	.	+	0	ID=cds2868;Parent=gene2921;Dbxref=EnsemblGenomes-Gn:azo2871,EnsemblGenomes-Tr:CAL95487,InterPro:IPR007372,UniProtKB/TrEMBL:A1K9I2,NCBI_GP:CAL95487.1;Name=CAL95487.1;Note=Conserved hypothetical YceI like protein. Homology to cv3276 of C. violaceum of 69%25 (trembl|Q7NSZ3(SRS)) Pfam: YceI like family E. coli. YceI is a base-induced periplasmic protein. Its function has not yet been characterised. signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical YceI like protein;protein_id=CAL95487.1;transl_table=11
AM406670.1	EMBL	gene	3151019	3152311	.	+	.	ID=gene2922;Name=azo2872;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2872
AM406670.1	EMBL	CDS	3151019	3152311	.	+	0	ID=cds2869;Parent=gene2922;Dbxref=EnsemblGenomes-Gn:azo2872,EnsemblGenomes-Tr:CAL95488,InterPro:IPR021830,UniProtKB/TrEMBL:A1K9I3,NCBI_GP:CAL95488.1;Name=CAL95488.1;Note=Conserved hypothetical membrane protein. Homology to NE1887 of Nitrosomonas europaea of 39%25 (trembl|Q82TK0). No domains predicted. No signal peptide. TMHMM2 program predicts presence of 1 TMH's.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95488.1;transl_table=11
AM406670.1	EMBL	gene	3152720	3153655	.	+	.	ID=gene2923;Name=purC;gbkey=Gene;gene=purC;gene_biotype=protein_coding;locus_tag=azo2873
AM406670.1	EMBL	CDS	3152720	3153655	.	+	0	ID=cds2870;Parent=gene2923;Dbxref=EnsemblGenomes-Gn:azo2873,EnsemblGenomes-Tr:CAL95489,GOA:A1K9I4,InterPro:IPR001636,InterPro:IPR013816,InterPro:IPR018236,InterPro:IPR028923,NCBI_GP:CAL95489.1;Name=CAL95489.1;Note=Phosphoribosylaminoimidazolesuccinocarboxamide synthase (Phosphoribosylaminoimidazole-succinocarboxamide synthase) (SAICAR synthase)%3B~High confidence in function and specificity;gbkey=CDS;gene=purC;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=CAL95489.1;transl_table=11
AM406670.1	EMBL	gene	3153726	3154457	.	-	.	ID=gene2924;Name=azo2874;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2874
AM406670.1	EMBL	CDS	3153726	3154457	.	-	0	ID=cds2871;Parent=gene2924;Dbxref=EnsemblGenomes-Gn:azo2874,EnsemblGenomes-Tr:CAL95490,InterPro:IPR014914,UniProtKB/TrEMBL:A1K9I5,NCBI_GP:CAL95490.1;Name=CAL95490.1;Note=Conserved hypothetical protein. Homology to AGR_C_1551 of A.tumefaciens of 40%25 (trembl:Q7D0J2). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95490.1;transl_table=11
AM406670.1	EMBL	gene	3154417	3154797	.	-	.	ID=gene2925;Name=azo2875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2875
AM406670.1	EMBL	CDS	3154417	3154797	.	-	0	ID=cds2872;Parent=gene2925;Dbxref=EnsemblGenomes-Gn:azo2875,EnsemblGenomes-Tr:CAL95491,InterPro:IPR020358,InterPro:IPR024467,UniProtKB/TrEMBL:A1K9I6,NCBI_GP:CAL95491.1;Name=CAL95491.1;Note=Conserved hypothetical protein%2C 67%25 similarity to TrEMBL:Q8UH3. No good homology with hits in the DB particularly at the start. Signal peptide reported present. No TMH present.%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95491.1;transl_table=11
AM406670.1	EMBL	gene	3155005	3155778	.	+	.	ID=gene2926;Name=azo2876;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2876
AM406670.1	EMBL	CDS	3155005	3155778	.	+	0	ID=cds2873;Parent=gene2926;Dbxref=EnsemblGenomes-Gn:azo2876,EnsemblGenomes-Tr:CAL95492,InterPro:IPR018692,UniProtKB/TrEMBL:A1K9I7,NCBI_GP:CAL95492.1;Name=CAL95492.1;Note=Conserved hypothetical membrane protein. Homology to cv3790 of C. violaceum of 36%25 (cvi:CV3790(KEGG). no domains predicted. no signal peptide. 6 TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95492.1;transl_table=11
AM406670.1	EMBL	gene	3155906	3157972	.	+	.	ID=gene2927;Name=prlC;gbkey=Gene;gene=prlC;gene_biotype=protein_coding;locus_tag=azo2877
AM406670.1	EMBL	CDS	3155906	3157972	.	+	0	ID=cds2874;Parent=gene2927;Dbxref=EnsemblGenomes-Gn:azo2877,EnsemblGenomes-Tr:CAL95493,GOA:A1K9I8,InterPro:IPR001567,InterPro:IPR024077,InterPro:IPR024079,InterPro:IPR024080,UniProtKB/TrEMBL:A1K9I8,NCBI_GP:CAL95493.1;Name=CAL95493.1;Note=Oligopeptidase A counts to the Thimet oligopeptidase family which cleave medium sized peptides. Similar to trembl|Q7VZC9 (49%25)%2C to trembl|Q9JX57 (48%25) and to sprot|OPDA_ECOLI (51%25). Pfam (PF01432): Peptidase family M3%3B~Specificity unclear;gbkey=CDS;gene=prlC;product=probable oligopeptidase A;protein_id=CAL95493.1;transl_table=11
AM406670.1	EMBL	gene	3157969	3158451	.	+	.	ID=gene2928;Name=azo2878;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2878
AM406670.1	EMBL	CDS	3157969	3158451	.	+	0	ID=cds2875;Parent=gene2928;Dbxref=EnsemblGenomes-Gn:azo2878,EnsemblGenomes-Tr:CAL95494,GOA:A1K9I9,InterPro:IPR002109,InterPro:IPR012336,InterPro:IPR025392,UniProtKB/TrEMBL:A1K9I9,NCBI_GP:CAL95494.1;Name=CAL95494.1;Note=Low similiraty to glutaredoxin protein Grx. Has a glutathione-disulfide oxidoreductase activity in the presence of nadph and glutathione reductase.Reduces low molecular weight disulfides and proteins (by similarity). Hypothetical protein yjbD. Signal peptide%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95494.1;transl_table=11
AM406670.1	EMBL	gene	3158471	3161860	.	-	.	ID=gene2929;Name=amtE;gbkey=Gene;gene=amtE;gene_biotype=protein_coding;locus_tag=azo2879
AM406670.1	EMBL	CDS	3158471	3161860	.	-	0	ID=cds2876;Parent=gene2929;Dbxref=EnsemblGenomes-Gn:azo2879,EnsemblGenomes-Tr:CAL95495,GOA:A1K9J0,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR001905,InterPro:IPR003660,InterPro:IPR013656,InterPro:IPR013767,InterPro:IPR018047,InterPro:IPR024041,InterPro:IPR029020,InterPro:IPR029787,UniProtKB/TrEMBL:A1K9J0,NCBI_GP:CAL95495.1;Name=CAL95495.1;Note=Putative ammonium transporter with sensory/GGDEF boxes. TREMBL:Q88M14: 50%25 identity%3B 65%25 similarity%3B TREMBL:Q7UK31: 46%25 identity%3B 58%25 siilarity InterPro:IPR001633%3B EAL. IPR000160%3B GGDEF. IPR001610%3B PAC. IPR000014%3B PAS_domain. IPR001905%3B Ammonium_transpt. IPR003594%3B ATPbind_ATPase Pfam: PF00563%3B EAL%3B PF00990%3B GGDEF%3B PF00785%3B PAC%3B PF00989%3B PAS%3B PF00909%3B Ammonium_transp SMART SM00267%3B DUF1%3B SM00052%3B DUF2%3B SM00086%3B PAC%3B SM00091%3B PAS amt: ammonium transporter Nonsecretory protein with signal peptide (SignalP predicted). Presence of 12 transmembrane helices (TMHMM predicted).%3B~Specificity unclear;gbkey=CDS;gene=amtE;product=probable ammonia permease with sensory box/GGDEF domains;protein_id=CAL95495.1;transl_table=11
AM406670.1	EMBL	gene	3162198	3162959	.	+	.	ID=gene2930;Name=azo2880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2880
AM406670.1	EMBL	CDS	3162198	3162959	.	+	0	ID=cds2877;Parent=gene2930;Dbxref=EnsemblGenomes-Gn:azo2880,EnsemblGenomes-Tr:CAL95496,GOA:A1K9J1,InterPro:IPR004808,InterPro:IPR005135,InterPro:IPR020848,UniProtKB/TrEMBL:A1K9J1,NCBI_GP:CAL95496.1;Name=CAL95496.1;Note=Region start changed from 3161811 to 3162171 (-360 bases);gbkey=CDS;product=exodeoxyribonuclease III;protein_id=CAL95496.1;transl_table=11
AM406670.1	EMBL	gene	3162965	3163681	.	+	.	ID=gene2931;Name=azo2881;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2881
AM406670.1	EMBL	CDS	3162965	3163681	.	+	0	ID=cds2878;Parent=gene2931;Dbxref=EnsemblGenomes-Gn:azo2881,EnsemblGenomes-Tr:CAL95497,InterPro:IPR029058,UniProtKB/TrEMBL:A1K9J2,NCBI_GP:CAL95497.1;Name=CAL95497.1;Note=Hypothetical protein%2C has weak homology with other hits in the Database. TrEMBL%3BQ67LU3(34%25). Has Signal Peptide.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL95497.1;transl_table=11
AM406670.1	EMBL	gene	3163695	3164381	.	+	.	ID=gene2932;Name=nnr;gbkey=Gene;gene=nnr;gene_biotype=protein_coding;locus_tag=azo2882
AM406670.1	EMBL	CDS	3163695	3164381	.	+	0	ID=cds2879;Parent=gene2932;Dbxref=EnsemblGenomes-Gn:azo2882,EnsemblGenomes-Tr:CAL95498,GOA:A1K9J3,InterPro:IPR000595,InterPro:IPR001808,InterPro:IPR011991,InterPro:IPR012318,InterPro:IPR014710,InterPro:IPR018490,UniProtKB/TrEMBL:A1K9J3,NCBI_GP:CAL95498.1;Name=CAL95498.1;Note=Putative transcription regulator%2C Nnr-type.%3B~Family membership;gbkey=CDS;gene=nnr;product=putative transcription regulator%2C Nnr-type;protein_id=CAL95498.1;transl_table=11
AM406670.1	EMBL	gene	3164450	3164641	.	+	.	ID=gene2933;Name=azo2883;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2883
AM406670.1	EMBL	CDS	3164450	3164641	.	+	0	ID=cds2880;Parent=gene2933;Dbxref=EnsemblGenomes-Gn:azo2883,EnsemblGenomes-Tr:CAL95499,InterPro:IPR021309,UniProtKB/TrEMBL:A1K9J4,NCBI_GP:CAL95499.1;Name=CAL95499.1;Note=Conserved hypothetical secreted protein. Homology to RPA1091 of R.palustris of 57%25 (tremble:CAE26534). No domains predicted. No TMH. signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95499.1;transl_table=11
AM406670.1	EMBL	gene	3164700	3165497	.	-	.	ID=gene2934;Name=ksgA;gbkey=Gene;gene=ksgA;gene_biotype=protein_coding;locus_tag=azo2884
AM406670.1	EMBL	CDS	3164700	3165497	.	-	0	ID=cds2881;Parent=gene2934;Dbxref=EnsemblGenomes-Gn:azo2884,EnsemblGenomes-Tr:CAL95500,GOA:A1K9J5,InterPro:IPR001737,InterPro:IPR011530,InterPro:IPR020596,InterPro:IPR020598,InterPro:IPR023165,InterPro:IPR029063,UniProtKB/TrEMBL:A1K9J5,NCBI_GP:CAL95500.1;Name=CAL95500.1;Note=Dimethyladenosine transferase (EC 2.1.1.-) (S-adenosylmethionine-6-N N-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase). Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3end of 16S rRNA in the 30S particle. Its inactivation leads to kasugamycin resistance. ksgA: dimethyladenosine transferase%3B~High confidence in function and specificity;gbkey=CDS;gene=ksgA;product=dimethyladenosine transferase;protein_id=CAL95500.1;transl_table=11
AM406670.1	EMBL	gene	3165517	3166509	.	-	.	ID=gene2935;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=azo2885
AM406670.1	EMBL	CDS	3165517	3166509	.	-	0	ID=cds2882;Parent=gene2935;Dbxref=EnsemblGenomes-Gn:azo2885,EnsemblGenomes-Tr:CAL95501,GOA:A1K9J6,InterPro:IPR005255,InterPro:IPR024084,NCBI_GP:CAL95501.1;Name=CAL95501.1;Note=4- (phosphohydroxy)-L-threonine dehydrogenase. Catalyzes the NAD-dependent oxidation of 4-(phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which spontaneously decarboxylate to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=pdxA;product=4-hydroxythreonine-4-phosphate dehydrogenase;protein_id=CAL95501.1;transl_table=11
AM406670.1	EMBL	gene	3166514	3167833	.	-	.	ID=gene2936;Name=surA;gbkey=Gene;gene=surA;gene_biotype=protein_coding;locus_tag=azo2886
AM406670.1	EMBL	CDS	3166514	3167833	.	-	0	ID=cds2883;Parent=gene2936;Dbxref=EnsemblGenomes-Gn:azo2886,EnsemblGenomes-Tr:CAL95502,GOA:A1K9J7,InterPro:IPR000297,InterPro:IPR015391,InterPro:IPR023034,InterPro:IPR023058,InterPro:IPR027304,UniProtKB/TrEMBL:A1K9J7,NCBI_GP:CAL95502.1;Name=CAL95502.1;Note=Putative peptidyl-prolyl cis-trans isomerase. Homology to surA of E. coli of 32%25 (sprot|SURA_ECOLI). Assist in the folding of extracytoplasmic proteins. Essential for the survival of E.coli in stationary phase. Pfam: PPIC-type PPIASE domain signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=surA;product=putative peptidyl-prolyl cis-trans isomerase;protein_id=CAL95502.1;transl_table=11
AM406670.1	EMBL	gene	3167868	3169991	.	-	.	ID=gene2937;Name=ostA;gbkey=Gene;gene=ostA;gene_biotype=protein_coding;locus_tag=azo2887
AM406670.1	EMBL	CDS	3167868	3169991	.	-	0	ID=cds2884;Parent=gene2937;Dbxref=EnsemblGenomes-Gn:azo2887,EnsemblGenomes-Tr:CAL95503,GOA:A1K9J8,InterPro:IPR005653,InterPro:IPR007543,InterPro:IPR020889,NCBI_GP:CAL95503.1;Name=CAL95503.1;Note=Organic solvent tolerance protein precursor.%3B~High confidence in function and specificity;gbkey=CDS;gene=ostA;product=organic solvent tolerance protein precursor;protein_id=CAL95503.1;transl_table=11
AM406670.1	EMBL	gene	3170525	3171544	.	+	.	ID=gene2938;Name=azo2888;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2888
AM406670.1	EMBL	CDS	3170525	3171544	.	+	0	ID=cds2885;Parent=gene2938;Dbxref=EnsemblGenomes-Gn:azo2888,EnsemblGenomes-Tr:CAL95504,GOA:A1K9J9,InterPro:IPR002575,InterPro:IPR011009,UniProtKB/TrEMBL:A1K9J9,NCBI_GP:CAL95504.1;Name=CAL95504.1;Note=Conserved hypothetical protein. Homology to ne0191 of N. europaea of 61%25 (trembl|Q82XR3). Pfam: DUF227. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95504.1;transl_table=11
AM406670.1	EMBL	gene	3171570	3172298	.	+	.	ID=gene2939;Name=azo2889;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2889
AM406670.1	EMBL	CDS	3171570	3172298	.	+	0	ID=cds2886;Parent=gene2939;Dbxref=EnsemblGenomes-Gn:azo2889,EnsemblGenomes-Tr:CAL95505,GOA:A1K9K0,InterPro:IPR005835,InterPro:IPR029044,UniProtKB/TrEMBL:A1K9K0,NCBI_GP:CAL95505.1;Name=CAL95505.1;Note=Specificity unclear;gbkey=CDS;product=Nucleotidyltransferase;protein_id=CAL95505.1;transl_table=11
AM406670.1	EMBL	gene	3172306	3173652	.	+	.	ID=gene2940;Name=pepP;gbkey=Gene;gene=pepP;gene_biotype=protein_coding;locus_tag=azo2890
AM406670.1	EMBL	CDS	3172306	3173652	.	+	0	ID=cds2887;Parent=gene2940;Dbxref=EnsemblGenomes-Gn:azo2890,EnsemblGenomes-Tr:CAL95506,GOA:A1K9K1,InterPro:IPR000994,InterPro:IPR001131,InterPro:IPR001714,InterPro:IPR007865,InterPro:IPR028980,InterPro:IPR029149,UniProtKB/TrEMBL:A1K9K1,NCBI_GP:CAL95506.1;Name=CAL95506.1;Note=Xaa-Pro aminopeptidase%2C%3B~Specificity unclear;gbkey=CDS;gene=pepP;product=probable Xaa-Pro aminopeptidase;protein_id=CAL95506.1;transl_table=11
AM406670.1	EMBL	gene	3173642	3174805	.	+	.	ID=gene2941;Name=ubiH;gbkey=Gene;gene=ubiH;gene_biotype=protein_coding;locus_tag=azo2891
AM406670.1	EMBL	CDS	3173642	3174805	.	+	0	ID=cds2888;Parent=gene2941;Dbxref=EnsemblGenomes-Gn:azo2891,EnsemblGenomes-Tr:CAL95507,GOA:A1K9K2,InterPro:IPR002938,InterPro:IPR003042,InterPro:IPR010971,UniProtKB/TrEMBL:A1K9K2,NCBI_GP:CAL95507.1;Name=CAL95507.1;Note=ubiH%3B aromatic-ring hydroxylase (flavoprotein monooxygenase) Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1%2C4-benzoquinone. Ubiquinone biosynthesis pathway%2C by similarity.%3B~High confidence in function and specificity;gbkey=CDS;gene=ubiH;product=probable 2-octaprenyl-6-methoxyphenol hydroxylase oxidoreductase protein;protein_id=CAL95507.1;transl_table=11
AM406670.1	EMBL	gene	3174872	3175945	.	+	.	ID=gene2942;Name=dusB;gbkey=Gene;gene=dusB;gene_biotype=protein_coding;locus_tag=azo2892
AM406670.1	EMBL	CDS	3174872	3175945	.	+	0	ID=cds2889;Parent=gene2942;Dbxref=EnsemblGenomes-Gn:azo2892,EnsemblGenomes-Tr:CAL95508,GOA:A1K9K3,InterPro:IPR001269,InterPro:IPR004652,InterPro:IPR013785,InterPro:IPR018517,InterPro:IPR024036,UniProtKB/TrEMBL:A1K9K3,NCBI_GP:CAL95508.1;Name=CAL95508.1;Note=Conserved hypothetical tRNA-dihydrouridine synthase. Homology to dusB of Azoarcus sp. EbN1 of 81%25 (gnl|keqq|eba:ebA1152(KEGG)). Pfam: Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5%2C6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes%2C and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown%2C but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities%2C which may overlap. Dus 1 (Q9HGN6) from Saccharomyces cerevisiae acts on pre-tRNA-Phe%2C while Dus 2 (P53720) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit%2C requiring NADPH or NADH%2C and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. No signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=dusB;product=conserved hypothetical tRNA-dihydrouridine synthase;protein_id=CAL95508.1;transl_table=11
AM406670.1	EMBL	gene	3175942	3176178	.	+	.	ID=gene2943;Name=azo2893;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2893
AM406670.1	EMBL	CDS	3175942	3176178	.	+	0	ID=cds2890;Parent=gene2943;Dbxref=EnsemblGenomes-Gn:azo2893,EnsemblGenomes-Tr:CAL95509,GOA:A1K9K4,InterPro:IPR002197,InterPro:IPR005412,InterPro:IPR009057,UniProtKB/TrEMBL:A1K9K4,NCBI_GP:CAL95509.1;Name=CAL95509.1;Note=Putative fis-like DNA-binding protein%2C 57%25 Identity to SwissProt%3BQ8Y231%2CTrEMBL%3BQ7P0M2(58%25 Identity). Has PF02954%2C Bacterial regulatory protein%2C Fis family%3BIPR002197 HTH_Fis%3B The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions%2C and binds specifically to weakly related DNA sequences. It activates ribosomal RNA transcription%2C and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli. Some of its functions include inhibition of the initiation of DNA replication from the OriC site%2Cand promotion of Hin-mediated DNA inversion.;gbkey=CDS;product=putative fis-like DNA-binding protein;protein_id=CAL95509.1;transl_table=11
AM406670.1	EMBL	gene	3176279	3177862	.	+	.	ID=gene2944;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=azo2894
AM406670.1	EMBL	CDS	3176279	3177862	.	+	0	ID=cds2891;Parent=gene2944;Dbxref=EnsemblGenomes-Gn:azo2894,EnsemblGenomes-Tr:CAL95510,GOA:A1K9K5,InterPro:IPR002695,InterPro:IPR011607,InterPro:IPR016193,InterPro:IPR024051,UniProtKB/TrEMBL:A1K9K5,NCBI_GP:CAL95510.1;Name=CAL95510.1;Note=Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase)%3B IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP synthetase) (ATIC)] InterPro: AICARFT/IMPCHase bienzyme%3B~High confidence in function and specificity;gbkey=CDS;gene=purH;product=phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase;protein_id=CAL95510.1;transl_table=11
AM406670.1	EMBL	gene	3177876	3179153	.	+	.	ID=gene2945;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=azo2895
AM406670.1	EMBL	CDS	3177876	3179153	.	+	0	ID=cds2892;Parent=gene2945;Dbxref=EnsemblGenomes-Gn:azo2895,EnsemblGenomes-Tr:CAL95511,GOA:A1K9K6,InterPro:IPR000115,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,InterPro:IPR020560,InterPro:IPR020561,InterPro:IPR020562,UniProtKB/TrEMBL:A1K9K6,NCBI_GP:CAL95511.1;Name=CAL95511.1;Note=Phosphoribosylamine--glycine ligase (Phosphoribosylglycinamide synthetase) (Glycinamide ribonucleotide synthetase) (GAR synthetase) (GARS)%3B~High confidence in function and specificity;gbkey=CDS;gene=purD;product=Phosphoribosylamine--glycine ligase;protein_id=CAL95511.1;transl_table=11
AM406670.1	EMBL	gene	3179160	3180074	.	+	.	ID=gene2946;Name=hemF;gbkey=Gene;gene=hemF;gene_biotype=protein_coding;locus_tag=azo2896
AM406670.1	EMBL	CDS	3179160	3180074	.	+	0	ID=cds2893;Parent=gene2946;Dbxref=EnsemblGenomes-Gn:azo2896,EnsemblGenomes-Tr:CAL95512,GOA:A1K9K7,InterPro:IPR001260,InterPro:IPR018375,UniProtKB/TrEMBL:A1K9K7,NCBI_GP:CAL95512.1;Name=CAL95512.1;Note=Coproporphyrinogen III oxidase aerobic (EC 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase). catalytic activity: oproporphyrinogen-iii + o(2) %3D protoporphyrinogen-ix + 2 co(2) + 2 h(2)o. pathway: porphyrin biosynthesis. similarity: belongs to the aerobic coproporphyrinogen iii oxidase family.%3B~High confidence in function and specificity;gbkey=CDS;gene=hemF;product=HemF protein;protein_id=CAL95512.1;transl_table=11
AM406670.1	EMBL	gene	3180121	3181881	.	+	.	ID=gene2947;Name=sulP1;gbkey=Gene;gene=sulP1;gene_biotype=protein_coding;locus_tag=azo2897
AM406670.1	EMBL	CDS	3180121	3181881	.	+	0	ID=cds2894;Parent=gene2947;Dbxref=EnsemblGenomes-Gn:azo2897,EnsemblGenomes-Tr:CAL95513,GOA:A1K9K8,InterPro:IPR001902,InterPro:IPR002645,InterPro:IPR011547,UniProtKB/TrEMBL:A1K9K8,NCBI_GP:CAL95513.1;Name=CAL95513.1;Note=Sulfate permease%2C SulP. Permease member of the MFS superfamily%2C involved in the transport of sulfate. Putative sulfate transporter ychM. InterPro: IPR002645%3B STAS. IPR001902%3B Sulph_transpt. Pfam: PF01740%3B STAS%3B 1. PF00916%3B Sulfate_transp%3B 1. SignalP: present. HIGH-AFFINITY H+/SULFATE COTRANSPORTER THAT MEDIATES THE UPTAKE OF SULFATE BY PLANT ROOTS FROM LOW CONCENTRATIONS OF SULFATE IN THE SOIL SOLUTION.%3B~High confidence in function and specificity;gbkey=CDS;gene=sulP1;product=putative sulfate transporter;protein_id=CAL95513.1;transl_table=11
AM406670.1	EMBL	gene	3181964	3182215	.	+	.	ID=gene2948;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=azo2898
AM406670.1	EMBL	CDS	3181964	3182215	.	+	0	ID=cds2895;Parent=gene2948;Dbxref=EnsemblGenomes-Gn:azo2898,EnsemblGenomes-Tr:CAL95514,GOA:A1K9K9,InterPro:IPR000307,InterPro:IPR020592,InterPro:IPR023803,NCBI_GP:CAL95514.1;Name=CAL95514.1;Note=30S ribosomal protein S16.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsP;product=30S ribosomal protein S16;protein_id=CAL95514.1;transl_table=11
AM406670.1	EMBL	gene	3182235	3182741	.	+	.	ID=gene2949;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=azo2899
AM406670.1	EMBL	CDS	3182235	3182741	.	+	0	ID=cds2896;Parent=gene2949;Dbxref=EnsemblGenomes-Gn:azo2899,EnsemblGenomes-Tr:CAL95515,GOA:A1K9L0,InterPro:IPR002676,InterPro:IPR009000,InterPro:IPR011033,InterPro:IPR011961,InterPro:IPR027275,NCBI_GP:CAL95515.1;Name=CAL95515.1;Note=Conserved hypothetical 16S rRNA processing protein rimM. Homology to rimM of R. solanacearum of 44%25 (sprot|RIMM_RALSO). Essential for efficient processing of 16S rRNA. Probably part of the 30S subunit prior to or during the final step in the processing of 16S free 30S ribosomal subunits. It could be some accessory protein needed for efficient assembly of the 30S subunit. It is needed in a step prior to rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes. Pfam: RimM. no signal peptide. no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=rimM;product=conserved hypothetical 16S rRNA processing protein;protein_id=CAL95515.1;transl_table=11
AM406670.1	EMBL	gene	3182723	3183535	.	+	.	ID=gene2950;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=azo2900
AM406670.1	EMBL	CDS	3182723	3183535	.	+	0	ID=cds2897;Parent=gene2950;Dbxref=EnsemblGenomes-Gn:azo2900,EnsemblGenomes-Tr:CAL95516,GOA:A1K9L1,InterPro:IPR002649,InterPro:IPR016009,InterPro:IPR023148,InterPro:IPR029026,InterPro:IPR029028,UniProtKB/TrEMBL:A1K9L1,NCBI_GP:CAL95516.1;Name=CAL95516.1;Note=tRNA (Guanine-N(1)-)-methyltransferase (EC 2.1.1.31) (M1G- methyltransferase) (tRNA [GM37] methyltransferase). Specifically methylates guanosine-37 in various tRNAs%3B~High confidence in function and specificity;gbkey=CDS;gene=trmD;product=tRNA (guanine-N1-)-methyltransferase;protein_id=CAL95516.1;transl_table=11
AM406670.1	EMBL	gene	3183621	3184007	.	+	.	ID=gene2951;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=azo2901
AM406670.1	EMBL	CDS	3183621	3184007	.	+	0	ID=cds2898;Parent=gene2951;Dbxref=EnsemblGenomes-Gn:azo2901,EnsemblGenomes-Tr:CAL95517,GOA:A1K9L2,InterPro:IPR001857,InterPro:IPR008991,InterPro:IPR018257,NCBI_GP:CAL95517.1;Name=CAL95517.1;Note=50S ribosomal protein L19. This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site%3B~High confidence in function and specificity;gbkey=CDS;gene=rplS;product=50S ribosomal protein L19;protein_id=CAL95517.1;transl_table=11
AM406670.1	EMBL	gene	3184128	3185204	.	-	.	ID=gene2952;Name=azo2902;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2902
AM406670.1	EMBL	CDS	3184128	3185204	.	-	0	ID=cds2899;Parent=gene2952;Dbxref=EnsemblGenomes-Gn:azo2902,EnsemblGenomes-Tr:CAL95518,GOA:A1K9L3,InterPro:IPR005495,UniProtKB/TrEMBL:A1K9L3,NCBI_GP:CAL95518.1;Name=CAL95518.1;Note=TREMBL:Q8XWQ6: 39%25 identity%2C 56%25 similarity Hypothetical protein HI1703. InterPro: IPR005495%3B YjgP_YjgQ. Pfam: PF03739%3BPfam :DUF214:Predicted permease Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long%2C contain about 6 transmembrane regions and may be permeases%2C although there is no verification of this. subcellular location:integral membrane protein (potential). similarity:strong%2C to h.influenzae hi1703 2a69: Auxin Efflux Carrier TMHMM predicted 6 transmembrane helices%3B~Conserved hypothetical protein;gbkey=CDS;product=probable integral membrane protein;protein_id=CAL95518.1;transl_table=11
AM406670.1	EMBL	gene	3185201	3186280	.	-	.	ID=gene2953;Name=azo2903;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2903
AM406670.1	EMBL	CDS	3185201	3186280	.	-	0	ID=cds2900;Parent=gene2953;Dbxref=EnsemblGenomes-Gn:azo2903,EnsemblGenomes-Tr:CAL95519,GOA:A1K9L4,InterPro:IPR005495,UniProtKB/TrEMBL:A1K9L4,NCBI_GP:CAL95519.1;Name=CAL95519.1;Note=Conserved hypothetical membrane protein. TREMBL:Q8XWQ7: 40%25 identity%3B 55%25 similarity: probable integral membrane protein InterPro:IPR005495%3B YjgP_YjgQ. Pfam:PF03739%3B YjgP_YjgQ :UbiA : UbiA prenyltransferase family Pfam:DUF112:Integral membrane protein DUF112 Signal peptide present (Signal P predicted). Transmembrane helices: 5 (TMHMM predicted).%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95519.1;transl_table=11
AM406670.1	EMBL	gene	3186423	3187925	.	+	.	ID=gene2954;Name=pepA;gbkey=Gene;gene=pepA;gene_biotype=protein_coding;locus_tag=azo2904
AM406670.1	EMBL	CDS	3186423	3187925	.	+	0	ID=cds2901;Parent=gene2954;Dbxref=EnsemblGenomes-Gn:azo2904,EnsemblGenomes-Tr:CAL95520,GOA:A1K9L5,InterPro:IPR000819,InterPro:IPR008283,InterPro:IPR011356,InterPro:IPR023042,NCBI_GP:CAL95520.1;Name=CAL95520.1;Note=Cytosol aminopeptidases are zinc-dependent exopeptidases belonging to MEROPS peptidase family M17. They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing%2C catabolism and degradation of intracellular proteins. Similar to trembl|Q82X54 (53%25) and to sprot|AMPA_PSESM (56%25). Pfam (PF00883): Cytosol aminopeptidase SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=pepA;product=cytosol aminopeptidase;protein_id=CAL95520.1;transl_table=11
AM406670.1	EMBL	gene	3187931	3188368	.	+	.	ID=gene2955;Name=holC;gbkey=Gene;gene=holC;gene_biotype=protein_coding;locus_tag=azo2905
AM406670.1	EMBL	CDS	3187931	3188368	.	+	0	ID=cds2902;Parent=gene2955;Dbxref=EnsemblGenomes-Gn:azo2905,EnsemblGenomes-Tr:CAL95521,GOA:A1K9L6,InterPro:IPR007459,UniProtKB/TrEMBL:A1K9L6,NCBI_GP:CAL95521.1;Name=CAL95521.1;Note=Putative DNA polymerase III chi subunit%2C 40%25 Identity to TrEMBL%3B Q8XWQ9%2CQ63WC2%2CQ62LH1. Has PF04364%2C DNA polymerase III chi subunit%2C HolC%3BIPR007459%2C DNA_pol3_chi%3B The DNA polymerase III holoenzyme is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core%2C the sliding clamp%2C and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax%2C complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau)%2C but psi is insoluble unless it is in a complex with chi.;gbkey=CDS;gene=holC;product=DNA-directed DNA polymerase;protein_id=CAL95521.1;transl_table=11
AM406670.1	EMBL	gene	3188383	3188892	.	+	.	ID=gene2956;Name=azo2906;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2906
AM406670.1	EMBL	CDS	3188383	3188892	.	+	0	ID=cds2903;Parent=gene2956;Dbxref=EnsemblGenomes-Gn:azo2906,EnsemblGenomes-Tr:CAL95522,UniProtKB/TrEMBL:A1K9L7,NCBI_GP:CAL95522.1;Name=CAL95522.1;Note=Conserved hypothetical protein. Homology to ebA7176 of Azoarcus sp. EbN1 of 44%25 (gnl|keqq|eba:ebA7176(KEGG)). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95522.1;transl_table=11
AM406670.1	EMBL	gene	3188987	3191983	.	+	.	ID=gene2957;Name=valS;gbkey=Gene;gene=valS;gene_biotype=protein_coding;locus_tag=azo2907
AM406670.1	EMBL	CDS	3188987	3191983	.	+	0	ID=cds2904;Parent=gene2957;Dbxref=EnsemblGenomes-Gn:azo2907,EnsemblGenomes-Tr:CAL95523,GOA:A1K9L8,InterPro:IPR001412,InterPro:IPR002300,InterPro:IPR002303,InterPro:IPR009008,InterPro:IPR009080,InterPro:IPR010978,InterPro:IPR013155,InterPro:IPR014729,InterPro:IPR019499,NCBI_GP:CAL95523.1;Name=CAL95523.1;Note=Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS).%3B~High confidence in function and specificity;gbkey=CDS;gene=valS;product=ValS protein;protein_id=CAL95523.1;transl_table=11
AM406670.1	EMBL	gene	3192016	3192657	.	-	.	ID=gene2958;Name=azo2908;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2908
AM406670.1	EMBL	CDS	3192016	3192657	.	-	0	ID=cds2905;Parent=gene2958;Dbxref=EnsemblGenomes-Gn:azo2908,EnsemblGenomes-Tr:CAL95524,GOA:A1K9L9,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR011075,InterPro:IPR015292,InterPro:IPR015893,UniProtKB/TrEMBL:A1K9L9,NCBI_GP:CAL95524.1;Name=CAL95524.1;Note=Putative TetR family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative TetR family transcriptional regulator;protein_id=CAL95524.1;transl_table=11
AM406670.1	EMBL	gene	3192663	3193847	.	-	.	ID=gene2959;Name=azo2909;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2909
AM406670.1	EMBL	CDS	3192663	3193847	.	-	0	ID=cds2906;Parent=gene2959;Dbxref=EnsemblGenomes-Gn:azo2909,EnsemblGenomes-Tr:CAL95525,GOA:A1K9M0,InterPro:IPR000412,UniProtKB/TrEMBL:A1K9M0,NCBI_GP:CAL95525.1;Name=CAL95525.1;Note=Similar to TREMBL:Q82VH0 (64%25 identity)%3B TREMBL:Q9HTW0 (63%25 identity)%3B TREMBL:Q8FZX1 (64%25 identity). TMHMM predicting seven transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease;protein_id=CAL95525.1;transl_table=11
AM406670.1	EMBL	gene	3193878	3196646	.	-	.	ID=gene2960;Name=azo2910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2910
AM406670.1	EMBL	CDS	3193878	3196646	.	-	0	ID=cds2907;Parent=gene2960;Dbxref=EnsemblGenomes-Gn:azo2910,EnsemblGenomes-Tr:CAL95526,GOA:A1K9M1,InterPro:IPR000412,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K9M1,NCBI_GP:CAL95526.1;Name=CAL95526.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:Q8FZX0 (58%25 identity)%3B TREMBL:Q8U6Y9 (59%25 identity). InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003439): ABC transporter. Pfam (PF00005): ABC transporter. TMHMM predicting five transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~High confidence in function and specificity;gbkey=CDS;product=ABC transporter permease and ATP-binding protein;protein_id=CAL95526.1;transl_table=11
AM406670.1	EMBL	gene	3196643	3197716	.	-	.	ID=gene2961;Name=azo2911;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2911
AM406670.1	EMBL	CDS	3196643	3197716	.	-	0	ID=cds2908;Parent=gene2961;Dbxref=EnsemblGenomes-Gn:azo2911,EnsemblGenomes-Tr:CAL95527,GOA:A1K9M2,InterPro:IPR006143,UniProtKB/TrEMBL:A1K9M2,NCBI_GP:CAL95527.1;Name=CAL95527.1;Note=HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C TREMBL:Q8ZLD9 (56%25 identity)%3B TREMBL:Q8VR08 (56%25 identity). Pfam (PF00529): HlyD family secretion protein. SignalP reporting signal peptide. TC (8.A.1): The Membrane Fusion Protein (MFP) Family.%3B~Family membership;gbkey=CDS;product=membrane fusion protein;protein_id=CAL95527.1;transl_table=11
AM406670.1	EMBL	gene	3197732	3199141	.	-	.	ID=gene2962;Name=oprM3;gbkey=Gene;gene=oprM3;gene_biotype=protein_coding;locus_tag=azo2912
AM406670.1	EMBL	CDS	3197732	3199141	.	-	0	ID=cds2909;Parent=gene2962;Dbxref=EnsemblGenomes-Gn:azo2912,EnsemblGenomes-Tr:CAL95528,GOA:A1K9M3,InterPro:IPR003423,InterPro:IPR010131,UniProtKB/TrEMBL:A1K9M3,NCBI_GP:CAL95528.1;Name=CAL95528.1;Note=Probable outer membrane efflux protein. Homology to oprM of P. aeruginosa of 47%25. Component of an efflux system that confers multidrug or multible antibiotic resistence. InterPro: Outer membrane efflux protein Pfam: Outer membrane efflux protein signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=oprM3;product=probable outer membrane efflux protein;protein_id=CAL95528.1;transl_table=11
AM406670.1	EMBL	gene	3199640	3200071	.	+	.	ID=gene2963;Name=fimT;gbkey=Gene;gene=fimT;gene_biotype=protein_coding;locus_tag=azo2913
AM406670.1	EMBL	CDS	3199640	3200071	.	+	0	ID=cds2910;Parent=gene2963;Dbxref=EnsemblGenomes-Gn:azo2913,EnsemblGenomes-Tr:CAL95529,GOA:A1K9M4,InterPro:IPR022346,UniProtKB/TrEMBL:A1K9M4,NCBI_GP:CAL95529.1;Name=CAL95529.1;Note=In P. aeruginosa fimT and fimU genes contain prepilin-like leader sequences. FimT plays probable a role in fimbrial biogenesis. Similar to trembl|Q87FA9 (30%25). Pfam (PF00114): Pilin (bacterial filament) TMHMM reporting one TMH. SignalP reporting Signal peptide.%3B~Function unclear;gbkey=CDS;gene=fimT;product=putative pre-pilin like protein;protein_id=CAL95529.1;transl_table=11
AM406670.1	EMBL	gene	3200061	3200528	.	+	.	ID=gene2964;Name=pilV;gbkey=Gene;gene=pilV;gene_biotype=protein_coding;locus_tag=azo2914
AM406670.1	EMBL	CDS	3200061	3200528	.	+	0	ID=cds2911;Parent=gene2964;Dbxref=EnsemblGenomes-Gn:azo2914,EnsemblGenomes-Tr:CAL95530,InterPro:IPR012902,InterPro:IPR013362,UniProtKB/TrEMBL:A1K9M5,NCBI_GP:CAL95530.1;Name=CAL95530.1;Note=In P. aeruginosa the genes pilV and pilE encode prepilin-like proteins involved in type 4 fimbrial biogenesis. Similar to trembl|Q8PJ74 (46%25). SignalP reporting Signal Peptide.%3B~Function unclear;gbkey=CDS;gene=pilV;product=putative prepilin-like protein;protein_id=CAL95530.1;transl_table=11
AM406670.1	EMBL	gene	3200534	3201547	.	+	.	ID=gene2965;Name=azo2915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2915
AM406670.1	EMBL	CDS	3200534	3201547	.	+	0	ID=cds2912;Parent=gene2965;Dbxref=EnsemblGenomes-Gn:azo2915,EnsemblGenomes-Tr:CAL95531,InterPro:IPR012902,UniProtKB/TrEMBL:A1K9M6,NCBI_GP:CAL95531.1;Name=CAL95531.1;Note=Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95531.1;transl_table=11
AM406670.1	EMBL	gene	3201544	3202113	.	+	.	ID=gene2966;Name=pilX;gbkey=Gene;gene=pilX;gene_biotype=protein_coding;locus_tag=azo2916
AM406670.1	EMBL	CDS	3201544	3202113	.	+	0	ID=cds2913;Parent=gene2966;Dbxref=EnsemblGenomes-Gn:azo2916,EnsemblGenomes-Tr:CAL95532,InterPro:IPR025746,UniProtKB/TrEMBL:A1K9M7,NCBI_GP:CAL95532.1;Name=CAL95532.1;Note=In P. aeruginosa the PilW and PilX proteins are membrane located%2C possess the hydrophobic N-terminus characteristic of prepilin-like proteins%2C and appear to belong to the GspJ and GspK group of proteins that are required for protein secretion in a wide range of Gram-negative bacteria. These genes are involved in the assembly of type 4 fimbriae. Similar to trembl|Q8PJ76 (34%25). TMHMM reporting one TMH. SignalP reporting Signal peptide.%3B~Function unclear;gbkey=CDS;gene=pilX;product=putative Tfp pilus assembly protein;protein_id=CAL95532.1;transl_table=11
AM406670.1	EMBL	gene	3202121	3206329	.	+	.	ID=gene2967;Name=pilY1B;gbkey=Gene;gene=pilY1B;gene_biotype=protein_coding;locus_tag=azo2917
AM406670.1	EMBL	CDS	3202121	3206329	.	+	0	ID=cds2914;Parent=gene2967;Dbxref=EnsemblGenomes-Gn:azo2917,EnsemblGenomes-Tr:CAL95533,InterPro:IPR008707,InterPro:IPR011047,UniProtKB/TrEMBL:A1K9M8,NCBI_GP:CAL95533.1;Name=CAL95533.1;Note=PilY1 is a large protein with C-terminal homology to the PilC2 protein of Neisseria gonorrhoeae%2C thought to be a fimbrial tip-associated adhesin%2C and which%2C like PilY1%2C is involved in fimbrial assembly. PilY1 appears to be located in both the membrane and the external fimbrial fractions. Similar to pir|H82802 (39%25). SignalP reporting Signal peptide%3B~Function unclear;gbkey=CDS;gene=pilY1B;product=putative Tfp pilus assembly protein;protein_id=CAL95533.1;transl_table=11
AM406670.1	EMBL	gene	3206332	3206736	.	+	.	ID=gene2968;Name=pilE;gbkey=Gene;gene=pilE;gene_biotype=protein_coding;locus_tag=azo2918
AM406670.1	EMBL	CDS	3206332	3206736	.	+	0	ID=cds2915;Parent=gene2968;Dbxref=EnsemblGenomes-Gn:azo2918,EnsemblGenomes-Tr:CAL95534,InterPro:IPR012902,UniProtKB/TrEMBL:A1K9M9,NCBI_GP:CAL95534.1;Name=CAL95534.1;Note=In P. aeruginosa PilE is probable involved in pilus biogenesis and in twitching motility. Similar to trembl|Q82TX3 (50%25) and to pir|G82857 (43%25). Pfam (PF00114): Pilin (bacterial filament) SignalP reporting Signal peptide. TMHMM reporting one Tmhelix%3B~Function unclear;gbkey=CDS;gene=pilE;product=putative prepilin like protein;protein_id=CAL95534.1;transl_table=11
AM406670.1	EMBL	gene	3206799	3207029	.	-	.	ID=gene2969;Name=azo2919;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2919
AM406670.1	EMBL	CDS	3206799	3207029	.	-	0	ID=cds2916;Parent=gene2969;Dbxref=EnsemblGenomes-Gn:azo2919,EnsemblGenomes-Tr:CAL95535,InterPro:IPR001455,UniProtKB/TrEMBL:A1K9N0,NCBI_GP:CAL95535.1;Name=CAL95535.1;Note=Conserved hypothetical protein. Homology to rsc0810 of R. solanacearum of 71%25 (trembl|Q8Y180). InterPro: Uncharacterized protein family UPF0033 (IPR001455). Pfam: Uncharacterized protein family UPF0033. no signal peptide. no TMH%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95535.1;transl_table=11
AM406670.1	EMBL	gene	3207107	3208546	.	-	.	ID=gene2970;Name=azo2920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2920
AM406670.1	EMBL	CDS	3207107	3208546	.	-	0	ID=cds2917;Parent=gene2970;Dbxref=EnsemblGenomes-Gn:azo2920,EnsemblGenomes-Tr:CAL95536,GOA:A1K9N1,InterPro:IPR001915,InterPro:IPR011990,UniProtKB/TrEMBL:A1K9N1,NCBI_GP:CAL95536.1;Name=CAL95536.1;Note=Conserved hypothetical protein. Homology to cv0524 C. violaceum of 42%25 (trembl|Q7P0P2). Pfam: Peptidase family M48. signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical peptidase;protein_id=CAL95536.1;transl_table=11
AM406670.1	EMBL	gene	3208627	3209139	.	+	.	ID=gene2971;Name=moaC;gbkey=Gene;gene=moaC;gene_biotype=protein_coding;locus_tag=azo2921
AM406670.1	EMBL	CDS	3208627	3209139	.	+	0	ID=cds2918;Parent=gene2971;Dbxref=EnsemblGenomes-Gn:azo2921,EnsemblGenomes-Tr:CAL95537,GOA:A1K9N2,InterPro:IPR002820,InterPro:IPR023045,InterPro:IPR023046,UniProtKB/TrEMBL:A1K9N2,NCBI_GP:CAL95537.1;Name=CAL95537.1;Note=Molybdenum cofactor biosynthesis protein C. Together with moaA is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z (By similarity). InterPro: MoaC family moaC: molybdenum cofactor biosynthesis protein C.%3B~High confidence in function and specificity;gbkey=CDS;gene=moaC;product=molybdenum cofactor biosynthesis protein C;protein_id=CAL95537.1;transl_table=11
AM406670.1	EMBL	gene	3209384	3209602	.	+	.	ID=gene2972;Name=azo2922;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2922
AM406670.1	EMBL	CDS	3209384	3209602	.	+	0	ID=cds2919;Parent=gene2972;Dbxref=EnsemblGenomes-Gn:azo2922,EnsemblGenomes-Tr:CAL95538,InterPro:IPR012903,InterPro:IPR022516,UniProtKB/TrEMBL:A1K9N3,NCBI_GP:CAL95538.1;Name=CAL95538.1;Note=Conserved hypothetical protein. Homology to orf11 of A. vinelandii of 63%25 (trembl|Q44537). no domains predicted. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95538.1;transl_table=11
AM406670.1	EMBL	gene	3209702	3210415	.	-	.	ID=gene2973;Name=tupC;gbkey=Gene;gene=tupC;gene_biotype=protein_coding;locus_tag=azo2923
AM406670.1	EMBL	CDS	3209702	3210415	.	-	0	ID=cds2920;Parent=gene2973;Dbxref=EnsemblGenomes-Gn:azo2923,EnsemblGenomes-Tr:CAL95539,GOA:A1K9N4,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1K9N4,NCBI_GP:CAL95539.1;Name=CAL95539.1;Note=Probable ATP-binding component of tungstate ABC transporter. Homology to tupC of E. acidaminophilum of 40%25 (tremble: Q93KD4). PROBABLY PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR tungstate. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT SYSTEM. Pfam: ABC transporter Interpo: ABC-transporter (IPR003439)%2C AAA-ATPase (IPR003593)%2C ATP/GTP-binding site motif A (loopP) (IPR001687) no signal peptide no TMHS%3B~Family membership;gbkey=CDS;gene=tupC;product=probable tungstate ATP-binding protein;protein_id=CAL95539.1;transl_table=11
AM406670.1	EMBL	gene	3210426	3211130	.	-	.	ID=gene2974;Name=tupB;gbkey=Gene;gene=tupB;gene_biotype=protein_coding;locus_tag=azo2924
AM406670.1	EMBL	CDS	3210426	3211130	.	-	0	ID=cds2921;Parent=gene2974;Dbxref=EnsemblGenomes-Gn:azo2924,EnsemblGenomes-Tr:CAL95540,GOA:A1K9N5,InterPro:IPR000515,UniProtKB/TrEMBL:A1K9N5,NCBI_GP:CAL95540.1;Name=CAL95540.1;Note=Probable tungstate permease protein. Homology to tupB of E. acidaminophilum of 40%25 (tremble: Q93KD5) Permase of an abc-transport system involved in transport of oxyanions. no signal peptide probable 5 TMHs%3B~Family membership;gbkey=CDS;gene=tupB;product=probable tungstate permease protein;protein_id=CAL95540.1;transl_table=11
AM406670.1	EMBL	gene	3211273	3211878	.	+	.	ID=gene2975;Name=azo2925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2925
AM406670.1	EMBL	CDS	3211273	3211878	.	+	0	ID=cds2922;Parent=gene2975;Dbxref=EnsemblGenomes-Gn:azo2925,EnsemblGenomes-Tr:CAL95541,InterPro:IPR025693,UniProtKB/TrEMBL:A1K9N6,NCBI_GP:CAL95541.1;Name=CAL95541.1;Note=Hypothetical secredted protein. no homology of the entire protein to the data bank. no domains predicted signal peptide no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95541.1;transl_table=11
AM406670.1	EMBL	gene	3211901	3212554	.	+	.	ID=gene2976;Name=azo2926;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2926
AM406670.1	EMBL	CDS	3211901	3212554	.	+	0	ID=cds2923;Parent=gene2976;Dbxref=EnsemblGenomes-Gn:azo2926,EnsemblGenomes-Tr:CAL95542,UniProtKB/TrEMBL:A1K9N7,NCBI_GP:CAL95542.1;Name=CAL95542.1;Note=Conserved hypothetical secreted protein. Homology to orf of P.aeruginosa of 30%25 (ZP_00137401). No domains predicted. Signal peptide reported present. No TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95542.1;transl_table=11
AM406670.1	EMBL	gene	3212572	3212877	.	-	.	ID=gene2977;Name=azo2927;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2927
AM406670.1	EMBL	CDS	3212572	3212877	.	-	0	ID=cds2924;Parent=gene2977;Dbxref=EnsemblGenomes-Gn:azo2927,EnsemblGenomes-Tr:CAL95543,UniProtKB/TrEMBL:A1K9N8,NCBI_GP:CAL95543.1;Name=CAL95543.1;Note=Conserved hypothetical protein. Homology to ebA5010 of Azoarcus sp. EbN1 of 40%25 (gnl|keqq|eba:ebA5010(KEGG)). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95543.1;transl_table=11
AM406670.1	EMBL	gene	3212888	3213139	.	-	.	ID=gene2978;Name=azo2928;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2928
AM406670.1	EMBL	CDS	3212888	3213139	.	-	0	ID=cds2925;Parent=gene2978;Dbxref=EnsemblGenomes-Gn:azo2928,EnsemblGenomes-Tr:CAL95544,InterPro:IPR003749,InterPro:IPR012675,InterPro:IPR016155,UniProtKB/TrEMBL:A1K9N9,NCBI_GP:CAL95544.1;Name=CAL95544.1;Note=Conserved hypothetical protein. Homology to Rgel02003612 of Rubrivivax gelatinosus PM1 of 51%25 (gi|47572157|ref|ZP_00242203.1|(NBCI ENTREZ)). Pfam: This family ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. This family of proteins have two conserved Glycines at the COOH terminus. MoaD%2C a protein involved sulphur transfer in molybdopterin synthesis%2C is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95544.1;transl_table=11
AM406670.1	EMBL	gene	3213150	3214418	.	-	.	ID=gene2979;Name=azo2929;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2929
AM406670.1	EMBL	CDS	3213150	3214418	.	-	0	ID=cds2926;Parent=gene2979;Dbxref=EnsemblGenomes-Gn:azo2929,EnsemblGenomes-Tr:CAL95545,GOA:A1K9P0,InterPro:IPR001327,InterPro:IPR013027,InterPro:IPR023753,UniProtKB/TrEMBL:A1K9P0,NCBI_GP:CAL95545.1;Name=CAL95545.1;Note=Putative oxidoreductase. Homology to narC of C. perfringens of 27%25 (trembl|Q9WX91) InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR001327) Pfam: Pyridine nucleotide-disulfide oxidoreductase no signal peptide no TMHs purD: phosphoribosylamine--glycine lig%3B~Family membership;gbkey=CDS;product=putative oxidoreductase;protein_id=CAL95545.1;transl_table=11
AM406670.1	EMBL	gene	3214510	3216357	.	-	.	ID=gene2980;Name=aorA;gbkey=Gene;gene=aorA;gene_biotype=protein_coding;locus_tag=azo2930
AM406670.1	EMBL	CDS	3214510	3216357	.	-	0	ID=cds2927;Parent=gene2980;Dbxref=EnsemblGenomes-Gn:azo2930,EnsemblGenomes-Tr:CAL95546,GOA:A1K9P1,InterPro:IPR001203,InterPro:IPR013983,InterPro:IPR013985,UniProtKB/TrEMBL:A1K9P1,NCBI_GP:CAL95546.1;Name=CAL95546.1;Note=Probable aldehyde ferredoxin oxidoreductase. Homology to aorA of E. acidodaminophilum of 47%25 (trembl|Q93KC8) InterPro: Aldehyde ferredoxin oxidoreductase (IPR001203) Pfam: Aldehyde ferredoxin oxidoreductase%2C N-terminus%3B Aldeyhde ferredoxin oxidoreductase%2C damains 2%263 no TMHs no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=aorA;product=probable aldehyde ferredoxin oxidoreductase;protein_id=CAL95546.1;transl_table=11
AM406670.1	EMBL	gene	3216368	3216844	.	-	.	ID=gene2981;Name=azo2931;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2931
AM406670.1	EMBL	CDS	3216368	3216844	.	-	0	ID=cds2928;Parent=gene2981;Dbxref=EnsemblGenomes-Gn:azo2931,EnsemblGenomes-Tr:CAL95547,GOA:A1K9P2,InterPro:IPR001450,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K9P2,NCBI_GP:CAL95547.1;Name=CAL95547.1;Note=Conserved hypothetical protein. Homology to gsu0911 of G. sulfurreducens of 38%25 (tremblnew|AAR34238). Pfam: 4Fe-4S binding domain. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95547.1;transl_table=11
AM406670.1	EMBL	gene	3216979	3219003	.	-	.	ID=gene2982;Name=azo2932;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2932
AM406670.1	EMBL	CDS	3216979	3219003	.	-	0	ID=cds2929;Parent=gene2982;Dbxref=EnsemblGenomes-Gn:azo2932,EnsemblGenomes-Tr:CAL95548,GOA:A1K9P3,InterPro:IPR000014,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003018,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K9P3,NCBI_GP:CAL95548.1;Name=CAL95548.1;Note=Similar to TREMBL:Q8XUQ7 (42%25 identity)%3B TREMBL:Q8PPN1 (40%25 identity)%3B SWISSPROT:P28614 (37%25 identity). Pfam (PF02954): Bacterial regulatory protein%2CFis family. Pfam (PF00158): Sigma-54 interaction domain. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;product=Sigma-54 dependent transcriptional regulator;protein_id=CAL95548.1;transl_table=11
AM406670.1	EMBL	gene	3219326	3219763	.	+	.	ID=gene2983;Name=exaB1;gbkey=Gene;gene=exaB1;gene_biotype=protein_coding;locus_tag=azo2933
AM406670.1	EMBL	CDS	3219326	3219763	.	+	0	ID=cds2930;Parent=gene2983;Dbxref=EnsemblGenomes-Gn:azo2933,EnsemblGenomes-Tr:CAL95549,GOA:A1K9P4,InterPro:IPR009056,UniProtKB/TrEMBL:A1K9P4,NCBI_GP:CAL95549.1;Name=CAL95549.1;Note=Probable cytochrome c550. Homology to exaB of P. aeruginosa of 57%25 (trembl|Q9Z4P8) Cytochrome c550 is an essential component of the quinoprotein ethanol oxidation system InterPro: Cytochrome c class I ((IPR003088) Pfam: Cytochrome c signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=exaB1;product=probable cytochrome c550;protein_id=CAL95549.1;transl_table=11
AM406670.1	EMBL	gene	3219753	3220616	.	+	.	ID=gene2984;Name=azo2934;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2934
AM406670.1	EMBL	CDS	3219753	3220616	.	+	0	ID=cds2931;Parent=gene2984;Dbxref=EnsemblGenomes-Gn:azo2934,EnsemblGenomes-Tr:CAL95550,GOA:A1K9P5,InterPro:IPR001638,UniProtKB/TrEMBL:A1K9P5,NCBI_GP:CAL95550.1;Name=CAL95550.1;Note=Conserved hypothetical amino acid-binding protein. Homology to pp2676 of P. putida of 34%25 (trembl|Q88JH3). PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR amino acids. InterPro: Bacterial extracellular solute-binding proteins family 3 (IPR001638)%3B solute binding protein /glutamate receptor (IPR001311). Pfam: Bacterial extracellular solute-binding protein. singal peptide. no TMHs%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical amino acid-binding protein;protein_id=CAL95550.1;transl_table=11
AM406670.1	EMBL	gene	3220743	3221693	.	+	.	ID=gene2985;Name=azo2935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2935
AM406670.1	EMBL	CDS	3220743	3221693	.	+	0	ID=cds2932;Parent=gene2985;Dbxref=EnsemblGenomes-Gn:azo2935,EnsemblGenomes-Tr:CAL95551,InterPro:IPR001680,InterPro:IPR011045,InterPro:IPR011964,InterPro:IPR013658,InterPro:IPR015943,InterPro:IPR019405,UniProtKB/TrEMBL:A1K9P6,NCBI_GP:CAL95551.1;Name=CAL95551.1;Note=Conserved hypothetical protein TMHMM2 reporting the presence of 1 TMH's. No Signal peptide present. Has 2 WD40 repeats%3BSMART%3BSM00320%2C Beta-transducin (G-beta) is one of the three subunits (alpha%2C beta%2C and gamma) of the guanine nucleotide-binding proteins (G proteins) which act as intermediaries in the transduction of signals generated by transmembrane receptors (see IPR001632). The alpha subunit binds to and hydrolyzes GTP%3B the functions of the beta and gamma subunits are less clear but they seem to be required for the replacement of GDP by GTP as well as for membrane anchoring and receptor recognition.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95551.1;transl_table=11
AM406670.1	EMBL	gene	3221690	3222226	.	+	.	ID=gene2986;Name=azo2936;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2936
AM406670.1	EMBL	CDS	3221690	3222226	.	+	0	ID=cds2933;Parent=gene2986;Dbxref=EnsemblGenomes-Gn:azo2936,EnsemblGenomes-Tr:CAL95552,GOA:A1K9P7,InterPro:IPR011577,InterPro:IPR016174,UniProtKB/TrEMBL:A1K9P7,NCBI_GP:CAL95552.1;Name=CAL95552.1;Note=Conserved hypothetical cytochrome B561. Homology to cv3278 of C. violaceum of 41%25. Involved in electronen transfer. no domains. no signal peptide. 4 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical cytochrome B561;protein_id=CAL95552.1;transl_table=11
AM406670.1	EMBL	gene	3222295	3222618	.	-	.	ID=gene2987;Name=cyt1;gbkey=Gene;gene=cyt1;gene_biotype=protein_coding;locus_tag=azo2937
AM406670.1	EMBL	CDS	3222295	3222618	.	-	0	ID=cds2934;Parent=gene2987;Dbxref=EnsemblGenomes-Gn:azo2937,EnsemblGenomes-Tr:CAL95553,GOA:A1K9P8,InterPro:IPR002324,InterPro:IPR003088,InterPro:IPR009056,UniProtKB/TrEMBL:A1K9P8,NCBI_GP:CAL95553.1;Name=CAL95553.1;Note=Probable cytochrome c-552 precursor. Homology to cyt of N. europaea of 50%25 (sprot|C552_NITEU). ELECTRON DONOR FOR CYTOCHROME CD1 IN NITRITE AND NITRATE RESPIRATION. InterPro: Cytochrome c class I (IPR003088)%3B Cytochrome c%2C class ID (IPR002324)%3B cytochrome c%2C class IC (IPR008168) Pfam: cytochrome c signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=cyt1;product=probable cytochrome c-552 precourser;protein_id=CAL95553.1;transl_table=11
AM406670.1	EMBL	gene	3222672	3223040	.	-	.	ID=gene2988;Name=azo2938;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2938
AM406670.1	EMBL	CDS	3222672	3223040	.	-	0	ID=cds2935;Parent=gene2988;Dbxref=EnsemblGenomes-Gn:azo2938,EnsemblGenomes-Tr:CAL95554,InterPro:IPR008497,UniProtKB/TrEMBL:A1K9P9,NCBI_GP:CAL95554.1;Name=CAL95554.1;Note=Conserved hypothetical protein. Homology to OB2533 of O.iheyensis of 64%25 (trembl:Q8ENF0). Has PF05610%2CProtein of unknown function (DUF779)%3BIPR008497%3BThis family consists of several bacterial proteins of unknown function. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95554.1;transl_table=11
AM406670.1	EMBL	gene	3223255	3224775	.	-	.	ID=gene2989;Name=aldA;gbkey=Gene;gene=aldA;gene_biotype=protein_coding;locus_tag=azo2939
AM406670.1	EMBL	CDS	3223255	3224775	.	-	0	ID=cds2936;Parent=gene2989;Dbxref=EnsemblGenomes-Gn:azo2939,EnsemblGenomes-Tr:CAL95555,GOA:A1K9Q0,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR029510,UniProtKB/TrEMBL:A1K9Q0,NCBI_GP:CAL95555.1;Name=CAL95555.1;Note=Aldehyde dehydrogenase (NAD+). Homology to aldA of X. autotrophicus of 76%25 (trembl|O50203). Aldehyde dehydrogenases are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=aldA;product=aldehyde dehydrogenase (NAD+);protein_id=CAL95555.1;transl_table=11
AM406670.1	EMBL	gene	3225116	3226705	.	+	.	ID=gene2990;Name=azo2940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2940
AM406670.1	EMBL	CDS	3225116	3226705	.	+	0	ID=cds2937;Parent=gene2990;Dbxref=EnsemblGenomes-Gn:azo2940,EnsemblGenomes-Tr:CAL95556,GOA:A1K9Q1,InterPro:IPR000014,InterPro:IPR002078,InterPro:IPR025662,InterPro:IPR027417,UniProtKB/TrEMBL:A1K9Q1,NCBI_GP:CAL95556.1;Name=CAL95556.1;Note=Similar to TREMBL:Q7P122 (29%25 identity)%3B TREMBL:Q87YQ3 (29%25 identity)%3B SWISSPROT:P28614 (28%25 identity). Pfam (PF00158): Sigma-54 interaction domain.%3B~Specificity unclear;gbkey=CDS;product=Sigma-54 dependent transcriptional regulator;protein_id=CAL95556.1;transl_table=11
AM406670.1	EMBL	gene	3226773	3227456	.	-	.	ID=gene2991;Name=zitB;gbkey=Gene;gene=zitB;gene_biotype=protein_coding;locus_tag=azo2941
AM406670.1	EMBL	CDS	3226773	3227456	.	-	0	ID=cds2938;Parent=gene2991;Dbxref=EnsemblGenomes-Gn:azo2941,EnsemblGenomes-Tr:CAL95557,GOA:A1K9Q2,InterPro:IPR002524,InterPro:IPR027469,UniProtKB/TrEMBL:A1K9Q2,NCBI_GP:CAL95557.1;Name=CAL95557.1;Note=Zinc transporter zitB (formaly ybgR).Involved in zinc efflux across the cytoplasmic membrane thus reducing zinc accumulation in the cytoplasm and rendering bacteria more resistant to zinc. It may contribute to zinc homeostasis at low concentrations of zinc (By similarity).The E.coli zitB gene encodes a Zn(II) transporter belonging to the cation diffusion facilitator family.%3B~High confidence in function and specificity;gbkey=CDS;gene=zitB;product=putative zinc transport protein;protein_id=CAL95557.1;transl_table=11
AM406670.1	EMBL	gene	3227685	3229697	.	+	.	ID=gene2992;Name=azo2942;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2942
AM406670.1	EMBL	CDS	3227685	3229697	.	+	0	ID=cds2939;Parent=gene2992;Dbxref=EnsemblGenomes-Gn:azo2942,EnsemblGenomes-Tr:CAL95558,InterPro:IPR021692,InterPro:IPR029058,UniProtKB/TrEMBL:A1K9Q3,NCBI_GP:CAL95558.1;Name=CAL95558.1;Note=Conserved hypothetical protein. Homology to PSPTO5055 of P.syringae of 36%25 (trembl:Q87V84). No domains predicted. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95558.1;transl_table=11
AM406670.1	EMBL	gene	3230033	3231325	.	+	.	ID=gene2993;Name=azo2943;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2943
AM406670.1	EMBL	CDS	3230033	3231325	.	+	0	ID=cds2940;Parent=gene2993;Dbxref=EnsemblGenomes-Gn:azo2943,EnsemblGenomes-Tr:CAL95559,InterPro:IPR021531,UniProtKB/TrEMBL:A1K9Q4,NCBI_GP:CAL95559.1;Name=CAL95559.1;Note=Conserved hypothetical protein. Homology to PSPTO5054 of P.syringae of 35%25 (trembl:Q87V85). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95559.1;transl_table=11
AM406670.1	EMBL	gene	3231339	3231797	.	-	.	ID=gene2994;Name=azo2944;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2944
AM406670.1	EMBL	CDS	3231339	3231797	.	-	0	ID=cds2941;Parent=gene2994;Dbxref=EnsemblGenomes-Gn:azo2944,EnsemblGenomes-Tr:CAL95560,InterPro:IPR007332,UniProtKB/TrEMBL:A1K9Q5,NCBI_GP:CAL95560.1;Name=CAL95560.1;Note=Conserved hypothetical secreted protein. Homology to ws0556 of W. succinogenes of 51%25 (trembl|Q7MSD6). Pfam: DUF411. The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance. signal peptide. TMH in signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95560.1;transl_table=11
AM406670.1	EMBL	gene	3231842	3233239	.	-	.	ID=gene2995;Name=copS;gbkey=Gene;gene=copS;gene_biotype=protein_coding;locus_tag=azo2945
AM406670.1	EMBL	CDS	3231842	3233239	.	-	0	ID=cds2942;Parent=gene2995;Dbxref=EnsemblGenomes-Gn:azo2945,EnsemblGenomes-Tr:CAL95561,GOA:A1K9Q6,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR006290,InterPro:IPR009082,UniProtKB/TrEMBL:A1K9Q6,NCBI_GP:CAL95561.1;Name=CAL95561.1;Note=Two component sensor kinase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=copS;product=two component sensor kinase;protein_id=CAL95561.1;transl_table=11
AM406670.1	EMBL	gene	3233236	3233916	.	-	.	ID=gene2996;Name=copR;gbkey=Gene;gene=copR;gene_biotype=protein_coding;locus_tag=azo2946
AM406670.1	EMBL	CDS	3233236	3233916	.	-	0	ID=cds2943;Parent=gene2996;Dbxref=EnsemblGenomes-Gn:azo2946,EnsemblGenomes-Tr:CAL95562,GOA:A1K9Q7,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR006291,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:A1K9Q7,NCBI_GP:CAL95562.1;Name=CAL95562.1;Note=Transcriptional activator protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=copR;product=two component response regulator;protein_id=CAL95562.1;transl_table=11
AM406670.1	EMBL	gene	3234103	3234528	.	+	.	ID=gene2997;Name=azo2947;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2947
AM406670.1	EMBL	CDS	3234103	3234528	.	+	0	ID=cds2944;Parent=gene2997;Dbxref=EnsemblGenomes-Gn:azo2947,EnsemblGenomes-Tr:CAL95563,UniProtKB/TrEMBL:A1K9Q8,NCBI_GP:CAL95563.1;Name=CAL95563.1;Note=Conserved hypothetical secreted protein. Homology to pp5391 of P. putida of 31%25 (trembl|Q88BZ2). no domains predicted. signal peptide. no TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95563.1;transl_table=11
AM406670.1	EMBL	gene	3234590	3234883	.	+	.	ID=gene2998;Name=azo2948;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2948
AM406670.1	EMBL	CDS	3234590	3234883	.	+	0	ID=cds2945;Parent=gene2998;Dbxref=EnsemblGenomes-Gn:azo2948,EnsemblGenomes-Tr:CAL95564,GOA:A1K9Q9,UniProtKB/TrEMBL:A1K9Q9,NCBI_GP:CAL95564.1;Name=CAL95564.1;Note=AAH:63279: 42%25 identity%2C 55%25 similarity Anti-oncogene%3B SH3 domain%3B Repeat%3B Description:SAM and SH3 domains containing protein 1 (proline-glutamate repeat-containing protein). Gene name(s) sash1 or pepe1 contains 1 SH3 domain. similarity: contains 2 sterile alpha motif (SAM) domains May have a role in a signaling pathway. Could act as a tumor supressor. InterPro: IPR001660%3B SAM. IPR001452: SH3. Pfam:PF00536%3B SAM%3B 2. PF00018:SH3%3B 1. SMART:SM00454%3B SAM%3B~Function unclear;gbkey=CDS;product=putative hydrolase;protein_id=CAL95564.1;transl_table=11
AM406670.1	EMBL	gene	3234880	3236301	.	+	.	ID=gene2999;Name=czcC;gbkey=Gene;gene=czcC;gene_biotype=protein_coding;locus_tag=azo2949
AM406670.1	EMBL	CDS	3234880	3236301	.	+	0	ID=cds2946;Parent=gene2999;Dbxref=EnsemblGenomes-Gn:azo2949,EnsemblGenomes-Tr:CAL95565,UniProtKB/TrEMBL:A1K9R0,NCBI_GP:CAL95565.1;Name=CAL95565.1;Note=Putative outer membrane efflux protein involved in cobalt-zinc-cadmium resistance (Cation efflux system protein czcC). Homology to czcC of R. eutropha of 24%25. czcC protein appears to modify the specificity of the system perhaps by acting on the czcB protein. When the czcC protein is added to czcA and czcB the efflux systems gained specificity for Cd(2+)and Co(2+) signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=czcC;product=putativemetal ion efflux outer membrane protein;protein_id=CAL95565.1;transl_table=11
AM406670.1	EMBL	gene	3236323	3237729	.	+	.	ID=gene3000;Name=azo2950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2950
AM406670.1	EMBL	CDS	3236323	3237729	.	+	0	ID=cds2947;Parent=gene3000;Dbxref=EnsemblGenomes-Gn:azo2950,EnsemblGenomes-Tr:CAL95566,GOA:A1K9R1,InterPro:IPR002355,InterPro:IPR006311,InterPro:IPR008972,InterPro:IPR011706,InterPro:IPR011707,UniProtKB/TrEMBL:A1K9R1,NCBI_GP:CAL95566.1;Name=CAL95566.1;Note=Multicopper oxidases are enzymes that possess three spectroscopically differentcopper centers. Similar to TREMBL:Q7X4G1 (71%25 identity)%3B TREMBL:Q8U8U7 (71%25 identity)%3B TREMBL:Q92ZC7 (70%25 identity). InterPro (IPR001117): Multicopper oxidase type 1. Pfam (PF00394): Multicopper oxidase. SignalP reporting signal peptide.%3B~Function unclear;gbkey=CDS;product=multicopper oxidase;protein_id=CAL95566.1;transl_table=11
AM406670.1	EMBL	gene	3237804	3238304	.	+	.	ID=gene3001;Name=azo2951;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2951
AM406670.1	EMBL	CDS	3237804	3238304	.	+	0	ID=cds2948;Parent=gene3001;Dbxref=EnsemblGenomes-Gn:azo2951,EnsemblGenomes-Tr:CAL95567,GOA:A1K9R2,InterPro:IPR000923,InterPro:IPR002355,InterPro:IPR006311,InterPro:IPR008972,UniProtKB/TrEMBL:A1K9R2,NCBI_GP:CAL95567.1;Name=CAL95567.1;Note=CopC: copper tolerance protein.CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA%2C CopC mediates copper resistance by sequestration of copper in the periplasm. 43%25 Cu-oxidase. InterPro:IPR008972%3B Cupredoxin. Signal pepetide:present. TMhelix:1.%3B~Function unclear;gbkey=CDS;product=putative copper tolerance protein;protein_id=CAL95567.1;transl_table=11
AM406670.1	EMBL	gene	3238418	3238759	.	+	.	ID=gene3002;Name=azo2952;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2952
AM406670.1	EMBL	CDS	3238418	3238759	.	+	0	ID=cds2949;Parent=gene3002;Dbxref=EnsemblGenomes-Gn:azo2952,EnsemblGenomes-Tr:CAL95568,InterPro:IPR021647,UniProtKB/TrEMBL:A1K9R3,NCBI_GP:CAL95568.1;Name=CAL95568.1;Note=Conserved hypothetical secreted protein. Homology to SMc02284 of S. meliloti of 38%25 (trembl|Q92S41(SRS)). Has PF07076:IPR009780%3BProtein of unknown function (DUF1344):This family consists of several short%2Chypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium%2CAgrobacterium and Brucella species. The function of this family is unknown. Signal peptide predicted. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95568.1;transl_table=11
AM406670.1	EMBL	gene	3238999	3240282	.	+	.	ID=gene3003;Name=azo2953;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2953
AM406670.1	EMBL	CDS	3238999	3240282	.	+	0	ID=cds2950;Parent=gene3003;Dbxref=EnsemblGenomes-Gn:azo2953,EnsemblGenomes-Tr:CAL95569,GOA:A1K9R4,InterPro:IPR003423,UniProtKB/TrEMBL:A1K9R4,NCBI_GP:CAL95569.1;Name=CAL95569.1;Note=Conserved hypothetical outer membrane efflux. Homology to ebA2169 Azoarcus sp. EbN1 of 68%25 (gnl|keqq|eba:ebA2169(KEGG)). Pfam: Outer membrane efflux protein. signal peptide. probable 1 TMH in signal peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical outer membrane efflux protein;protein_id=CAL95569.1;transl_table=11
AM406670.1	EMBL	gene	3240279	3241874	.	+	.	ID=gene3004;Name=cusB;gbkey=Gene;gene=cusB;gene_biotype=protein_coding;locus_tag=azo2954
AM406670.1	EMBL	CDS	3240279	3241874	.	+	0	ID=cds2951;Parent=gene3004;Dbxref=EnsemblGenomes-Gn:azo2954,EnsemblGenomes-Tr:CAL95570,GOA:A1K9R5,InterPro:IPR006143,InterPro:IPR021647,UniProtKB/TrEMBL:A1K9R5,NCBI_GP:CAL95570.1;Name=CAL95570.1;Note=Putative membrane fusion protein silB precursor. COMPONENT OF THE SIL CATION-EFFLUX SYSTEM THAT CONFERS RESISTANCE TO SILVER. MAY BE PART OF A THREE-COMPONENT CATION/PROTON ANTIPORTER.%3B~High confidence in function and specificity;gbkey=CDS;gene=cusB;product=cation efflux transmembrane protein;protein_id=CAL95570.1;transl_table=11
AM406670.1	EMBL	gene	3242221	3246132	.	+	.	ID=gene3005;Name=azo2955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2955
AM406670.1	EMBL	CDS	3242221	3246132	.	+	0	ID=cds2952;Parent=gene3005;Dbxref=EnsemblGenomes-Gn:azo2955,EnsemblGenomes-Tr:CAL95571,GOA:A1K9R6,InterPro:IPR001036,InterPro:IPR004763,InterPro:IPR027463,UniProtKB/TrEMBL:A1K9R6,NCBI_GP:CAL95571.1;Name=CAL95571.1;Note=Region start changed from 3242195 to 3242423 (-228 bases);gbkey=CDS;product=putative cation efflux system protein;protein_id=CAL95571.1;transl_table=11
AM406670.1	EMBL	gene	3246273	3248684	.	+	.	ID=gene3006;Name=azo2956;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2956
AM406670.1	EMBL	CDS	3246273	3248684	.	+	0	ID=cds2953;Parent=gene3006;Dbxref=EnsemblGenomes-Gn:azo2956,EnsemblGenomes-Tr:CAL95572,GOA:A1K9R7,InterPro:IPR001757,InterPro:IPR007029,InterPro:IPR008250,InterPro:IPR009078,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023299,InterPro:IPR027256,UniProtKB/TrEMBL:A1K9R7,NCBI_GP:CAL95572.1;Name=CAL95572.1;Note=Similar to E.coli CopA: copper transporting P-type ATPase protein%2C involved in the uptake and metabolism of copper(EC 3.6.3.4).Involved in copper transport(By similarity). Putative cation transporting P-type ATPase (EC 3.6.3.-).%3B~High confidence in function and specificity;gbkey=CDS;product=putative cooper-transporting ATPase protein;protein_id=CAL95572.1;transl_table=11
AM406670.1	EMBL	gene	3248752	3249315	.	+	.	ID=gene3007;Name=azo2957;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2957
AM406670.1	EMBL	CDS	3248752	3249315	.	+	0	ID=cds2954;Parent=gene3007;Dbxref=EnsemblGenomes-Gn:azo2957,EnsemblGenomes-Tr:CAL95573,UniProtKB/TrEMBL:A1K9R8,NCBI_GP:CAL95573.1;Name=CAL95573.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs. HTH predicted;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95573.1;transl_table=11
AM406670.1	EMBL	gene	3249338	3249823	.	-	.	ID=gene3008;Name=azo2958;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2958
AM406670.1	EMBL	CDS	3249338	3249823	.	-	0	ID=cds2955;Parent=gene3008;Dbxref=EnsemblGenomes-Gn:azo2958,EnsemblGenomes-Tr:CAL95574,UniProtKB/TrEMBL:A1K9R9,NCBI_GP:CAL95574.1;Name=CAL95574.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95574.1;transl_table=11
AM406670.1	EMBL	gene	3250037	3250312	.	+	.	ID=gene3009;Name=azo2959;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2959
AM406670.1	EMBL	CDS	3250037	3250312	.	+	0	ID=cds2956;Parent=gene3009;Dbxref=EnsemblGenomes-Gn:azo2959,EnsemblGenomes-Tr:CAL95575,GOA:A1K9S0,InterPro:IPR003779,InterPro:IPR004675,InterPro:IPR029032,UniProtKB/TrEMBL:A1K9S0,NCBI_GP:CAL95575.1;Name=CAL95575.1;Note=Carboxymuconolactone decarboxylase family protein%2C33%25 identity to TrEMBL%3BQ88K69. Has PF02627%2CCarboxymuconolactone decarboxylase family%3B Carboxymuconolactone decarboxylase (CMD)is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins (e.g. O67982) CMD represents the C-terminal domain%2CAbhydrolase_1 represents the N-terminal domain.%3B~Function unclear;gbkey=CDS;product=4-carboxymuconolactone decarboxylase;protein_id=CAL95575.1;transl_table=11
AM406670.1	EMBL	gene	3250526	3251743	.	+	.	ID=gene3010;Name=azo2960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2960
AM406670.1	EMBL	CDS	3250526	3251743	.	+	0	ID=cds2957;Parent=gene3010;Dbxref=EnsemblGenomes-Gn:azo2960,EnsemblGenomes-Tr:CAL95576,GOA:A1K9S1,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1K9S1,NCBI_GP:CAL95576.1;Name=CAL95576.1;Note=27%25 similarity to Hypothetical protein ycxA (ORF5)of Bacillus subtilis. 12 predicted transmembrane helices with signal peptide. 54%25 identity%2C 69%25 similarity to Pseudomonas putida membrane protein. InterPro: General substrate transporters 2A0111: Oxalate/Formate Antiporter%3B~Function unclear;gbkey=CDS;product=conserved hypothetical transporter;protein_id=CAL95576.1;transl_table=11
AM406670.1	EMBL	gene	3251743	3251892	.	+	.	ID=gene3011;Name=azo2961;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2961
AM406670.1	EMBL	CDS	3251743	3251892	.	+	0	ID=cds2958;Parent=gene3011;Dbxref=EnsemblGenomes-Gn:azo2961,EnsemblGenomes-Tr:CAL95577,UniProtKB/TrEMBL:A1K9S2,NCBI_GP:CAL95577.1;Name=CAL95577.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Has Signal peptide;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95577.1;transl_table=11
AM406670.1	EMBL	gene	3251919	3252485	.	+	.	ID=gene3012;Name=sigZ;gbkey=Gene;gene=sigZ;gene_biotype=protein_coding;locus_tag=azo2962
AM406670.1	EMBL	CDS	3251919	3252485	.	+	0	ID=cds2959;Parent=gene3012;Dbxref=EnsemblGenomes-Gn:azo2962,EnsemblGenomes-Tr:CAL95578,GOA:A1K9S3,InterPro:IPR007627,InterPro:IPR011991,InterPro:IPR013249,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:A1K9S3,NCBI_GP:CAL95578.1;Name=CAL95578.1;Note=Putative RNA polymerase sigma factor sigZ. The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. Similar to SWISSPROT: sprot|SIGZ_BACSU (23%25 Bacillus subtilis%2C RNA polymerase sigma factor SigZ) / sprot|RPSH_PSEAE (28%25 Pseudomonas aeruginosa%2C RNA polymerase sigma-h factor (sigma-30)%2C AlgU or AlgT) InterPro: IPR000838 Sigma70_ECF. Pfam: PF07638 ECF sigma factor.%3B~High confidence in function and specificity;gbkey=CDS;gene=sigZ;product=putative RNA polymerase sigma factor SigZ;protein_id=CAL95578.1;transl_table=11
AM406670.1	EMBL	gene	3252493	3253860	.	-	.	ID=gene3013;Name=chrA;gbkey=Gene;gene=chrA;gene_biotype=protein_coding;locus_tag=azo2963
AM406670.1	EMBL	CDS	3252493	3253860	.	-	0	ID=cds2960;Parent=gene3013;Dbxref=EnsemblGenomes-Gn:azo2963,EnsemblGenomes-Tr:CAL95579,GOA:A1K9S4,InterPro:IPR003370,InterPro:IPR014047,UniProtKB/TrEMBL:A1K9S4,NCBI_GP:CAL95579.1;Name=CAL95579.1;Note=Probable chromate transport protein.This protein reduces chromate accumulation and is essential for chromate resistance.Integral membrane protein.Induced by chromate. 27%25 Chromate_transpt. Pfam:PF02417%3B Chromate_transp%3B 2. TIGRFAMs:TIGR00937%3B 2A51%3B 1. TMHelix: 11. InterPro: Chromat transporter 2A51: Chromate Ion Transporter%3B~High confidence in function and specificity;gbkey=CDS;gene=chrA;product=putative chromate transport protein;protein_id=CAL95579.1;transl_table=11
AM406670.1	EMBL	gene	3253862	3254782	.	-	.	ID=gene3014;Name=chrB;gbkey=Gene;gene=chrB;gene_biotype=protein_coding;locus_tag=azo2964
AM406670.1	EMBL	CDS	3253862	3254782	.	-	0	ID=cds2961;Parent=gene3014;Dbxref=EnsemblGenomes-Gn:azo2964,EnsemblGenomes-Tr:CAL95580,InterPro:IPR018634,UniProtKB/TrEMBL:A1K9S5,NCBI_GP:CAL95580.1;Name=CAL95580.1;Note=Probable Chromate resistance signal peptide protein%2C 49%25 Identity to TrEMBL%3B Q7NZK1%2C Q8XSC4. Has Signal Pepride.;gbkey=CDS;gene=chrB;product=probable Chromate resistance signal peptide protein;protein_id=CAL95580.1;transl_table=11
AM406670.1	EMBL	gene	3254885	3255571	.	-	.	ID=gene3015;Name=azo2965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2965
AM406670.1	EMBL	CDS	3254885	3255571	.	-	0	ID=cds2962;Parent=gene3015;Dbxref=EnsemblGenomes-Gn:azo2965,EnsemblGenomes-Tr:CAL95581,InterPro:IPR003829,InterPro:IPR011051,InterPro:IPR012093,InterPro:IPR014710,UniProtKB/TrEMBL:A1K9S6,NCBI_GP:CAL95581.1;Name=CAL95581.1;Note=Protein yhhW. SPROT:P46852: 51%25 identity%2C 69%25 similarity entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body InterPro%3B IPR007113%3B Cupin_sup. InterPro%3B IPR003829%3B Pirin_N. Pfam%3B PF02678%3B Pirin%3B TIGR00292: thiazole biosynthesis enzyme Absence of transmembrane helices (TMHMM predicted).%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95581.1;transl_table=11
AM406670.1	EMBL	gene	3255634	3256128	.	-	.	ID=gene3016;Name=azo2966;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2966
AM406670.1	EMBL	CDS	3255634	3256128	.	-	0	ID=cds2963;Parent=gene3016;Dbxref=EnsemblGenomes-Gn:azo2966,EnsemblGenomes-Tr:CAL95582,InterPro:IPR011637,UniProtKB/TrEMBL:A1K9S7,NCBI_GP:CAL95582.1;Name=CAL95582.1;Note=Conserved hypothetical membrane protein. Homology to VPA0043 of Vibrio parahaemolyticus of 64%25 (trembl|Q87K55). Pfam: TQO small subunit DoxD. DoxD is a subunit of the terminal quinol oxidase present in the plasma membrane of Acidianus ambivalens%2C with calculated molecular mass of 20.4 kDa. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide. Signal peptide. 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95582.1;transl_table=11
AM406670.1	EMBL	gene	3256251	3257171	.	+	.	ID=gene3017;Name=hupR;gbkey=Gene;gene=hupR;gene_biotype=protein_coding;locus_tag=azo2967
AM406670.1	EMBL	CDS	3256251	3257171	.	+	0	ID=cds2964;Parent=gene3017;Dbxref=EnsemblGenomes-Gn:azo2967,EnsemblGenomes-Tr:CAL95583,GOA:A1K9S8,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K9S8,NCBI_GP:CAL95583.1;Name=CAL95583.1;Note=Transcriptional regulator%2C LysR family%2C%3B~Family membership;gbkey=CDS;gene=hupR;product=transcriptional regulator%2C LysR family;protein_id=CAL95583.1;transl_table=11
AM406670.1	EMBL	gene	3257288	3257887	.	+	.	ID=gene3018;Name=wrbA1;gbkey=Gene;gene=wrbA1;gene_biotype=protein_coding;locus_tag=azo2968
AM406670.1	EMBL	CDS	3257288	3257887	.	+	0	ID=cds2965;Parent=gene3018;Dbxref=EnsemblGenomes-Gn:azo2968,EnsemblGenomes-Tr:CAL95584,GOA:A1K9S9,InterPro:IPR005025,InterPro:IPR008254,InterPro:IPR010089,InterPro:IPR029039,NCBI_GP:CAL95584.1;Name=CAL95584.1;Note=SPROT:Q92PU3: 71%25 identity%3B 82%25 similarity Flavoprotein wrbA1. cofactor:binds 1 fmn per monomer (by similarity). similarity:belongs to the wrba family%3B contains 1 flavodoxin-like domain. InterPro:IPR008254%3B Flav_nitox_synth. IPR001226%3B Flavodoxin. Pfam: PF00258%3B flavodoxin%3B 1. Absence of signal peptide (Signal P predicted) and transmembrane helices (TMHMM predicted) met_pdase_I: methionine aminopeptidase t%3B~High confidence in function and specificity;gbkey=CDS;gene=wrbA1;product=probable trp repressor binding protein (flavodoxin);protein_id=CAL95584.1;transl_table=11
AM406670.1	EMBL	gene	3258728	3259585	.	-	.	ID=gene3019;Name=azo2969;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2969
AM406670.1	EMBL	CDS	3258728	3259585	.	-	0	ID=cds2966;Parent=gene3019;Dbxref=EnsemblGenomes-Gn:azo2969,EnsemblGenomes-Tr:CAL95585,InterPro:IPR004010,UniProtKB/TrEMBL:A1K9T0,NCBI_GP:CAL95585.1;Name=CAL95585.1;Note=Conserved hypothetical secreted protein. Homology to ebA582 of Azoarcus sp. EbN1 of 37%25 (gnl|keqq|eba:ebA582(KEGG)). No domains predicted. Signal P reporting signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95585.1;transl_table=11
AM406670.1	EMBL	gene	3259643	3260290	.	-	.	ID=gene3020;Name=uvrY;gbkey=Gene;gene=uvrY;gene_biotype=protein_coding;locus_tag=azo2970
AM406670.1	EMBL	CDS	3259643	3260290	.	-	0	ID=cds2967;Parent=gene3020;Dbxref=EnsemblGenomes-Gn:azo2970,EnsemblGenomes-Tr:CAL95586,GOA:A1K9T1,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K9T1,NCBI_GP:CAL95586.1;Name=CAL95586.1;Note=Probable two-component response regulator%2C%3B~Family membership;gbkey=CDS;gene=uvrY;product=probable two-component response regulator;protein_id=CAL95586.1;transl_table=11
AM406670.1	EMBL	gene	3260287	3261633	.	-	.	ID=gene3021;Name=azo2971;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2971
AM406670.1	EMBL	CDS	3260287	3261633	.	-	0	ID=cds2968;Parent=gene3021;Dbxref=EnsemblGenomes-Gn:azo2971,EnsemblGenomes-Tr:CAL95587,GOA:A1K9T2,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR005467,InterPro:IPR011712,UniProtKB/TrEMBL:A1K9T2,NCBI_GP:CAL95587.1;Name=CAL95587.1;Note=Putative two-component sensor histidine kinase%2Conly very low similarity to SWISSPROT: sprot|DEGS_BACBR (13%25 Bacillus brevis%2C DegS) InterPro: IPR003661 His_kinA_N. Pfam: PF00672 HAMP domain. PF02518 Histidine kinase-%2C DNA gyrase B-%2C phytochrome-like ATPase TMHMM reporting 2 transmembrane helices. Sensor protein degS (EC 2.7.3.-). INVOLVED IN A SENSORY TRANSDUCTION PATHWAY THAT AFFECT THE PRODUCTION OF ENZYMES THAT DEGRADE POLYMERIC CARBON AND NITROGEN SOURCES. DEGS PROBABLY ACTS AS A KINASE THAT PHOSPHORYLATES DEGU.%3B~Function unclear;gbkey=CDS;product=putative two-component sensor histidine kinase;protein_id=CAL95587.1;transl_table=11
AM406670.1	EMBL	gene	3261821	3263698	.	+	.	ID=gene3022;Name=exaA2;gbkey=Gene;gene=exaA2;gene_biotype=protein_coding;locus_tag=azo2972
AM406670.1	EMBL	CDS	3261821	3263698	.	+	0	ID=cds2969;Parent=gene3022;Dbxref=EnsemblGenomes-Gn:azo2972,EnsemblGenomes-Tr:CAL95588,GOA:A1K9T3,InterPro:IPR001479,InterPro:IPR011047,InterPro:IPR017512,InterPro:IPR018391,InterPro:IPR027295,UniProtKB/TrEMBL:A1K9T3,NCBI_GP:CAL95588.1;Name=CAL95588.1;Note=Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol%2C but not highly active on methanol. 73%25 Bac_PQQ.IPR002372%3B Bac_PQQ_repeat. Pfam:PF01011%3B PQQ%3B 2. Signal peptide:present.%3B~High confidence in function and specificity;gbkey=CDS;gene=exaA2;product=ExaA2 protein;protein_id=CAL95588.1;transl_table=11
AM406670.1	EMBL	gene	3263828	3264388	.	+	.	ID=gene3023;Name=azo2973;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2973
AM406670.1	EMBL	CDS	3263828	3264388	.	+	0	ID=cds2970;Parent=gene3023;Dbxref=EnsemblGenomes-Gn:azo2973,EnsemblGenomes-Tr:CAL95589,InterPro:IPR001646,UniProtKB/TrEMBL:A1K9T4,NCBI_GP:CAL95589.1;Name=CAL95589.1;Note=Pentapeptide repeat family protein%2C 36%25 identity(46%25 similarity) to TrEMBL%3BQ88JH6. Signal P reporting Signal Peptide present. Has 3 copies of PF00805%2CPentapeptide repeats%3BIPR001646%2C 5peptide_repeat%3BThese repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix . The repeat can be approximately described as A(D/N)LXX%2C where X can be any amino acid.%3B~Conserved hypothetical protein;gbkey=CDS;product=pentapeptide repeat family protein;protein_id=CAL95589.1;transl_table=11
AM406670.1	EMBL	gene	3264394	3264876	.	+	.	ID=gene3024;Name=exaB2;gbkey=Gene;gene=exaB2;gene_biotype=protein_coding;locus_tag=azo2974
AM406670.1	EMBL	CDS	3264394	3264876	.	+	0	ID=cds2971;Parent=gene3024;Dbxref=EnsemblGenomes-Gn:azo2974,EnsemblGenomes-Tr:CAL95590,GOA:A1K9T5,InterPro:IPR006311,InterPro:IPR009056,UniProtKB/TrEMBL:A1K9T5,NCBI_GP:CAL95590.1;Name=CAL95590.1;Note=Putative cytochrome c550. Homology to exaB of P. aeruginosa of 37%25 (trembl|Q9Z4P8). Cytochrome c550 is an essential component of the quinoprotein ethanol oxidation. InterPro: Cytochrome c class I (IPR003088) Pfam: cytochrome c signal peptide no TMHs%3B~Function unclear;gbkey=CDS;gene=exaB2;product=putative cytochrome c550;protein_id=CAL95590.1;transl_table=11
AM406670.1	EMBL	gene	3265163	3266950	.	-	.	ID=gene3025;Name=exaA3;gbkey=Gene;gene=exaA3;gene_biotype=protein_coding;locus_tag=azo2975
AM406670.1	EMBL	CDS	3265163	3266950	.	-	0	ID=cds2972;Parent=gene3025;Dbxref=EnsemblGenomes-Gn:azo2975,EnsemblGenomes-Tr:CAL95591,GOA:A1K9T6,InterPro:IPR002372,InterPro:IPR011047,InterPro:IPR017512,InterPro:IPR018391,InterPro:IPR027295,UniProtKB/TrEMBL:A1K9T6,NCBI_GP:CAL95591.1;Name=CAL95591.1;Note=Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol%2C but not highly active on methanol. 53%25 Bac_PQQ.IPR002372%3B Bac_PQQ_repeat. Pfam:PF01011%3B PQQ%3B 2. Signal peptide:present. TMhelix:1%3B~High confidence in function and specificity;gbkey=CDS;gene=exaA3;product=putative quinoprotein ethanol dehydrogenase;protein_id=CAL95591.1;transl_table=11
AM406670.1	EMBL	gene	3267279	3268091	.	+	.	ID=gene3026;Name=azo2976;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2976
AM406670.1	EMBL	CDS	3267279	3268091	.	+	0	ID=cds2973;Parent=gene3026;Dbxref=EnsemblGenomes-Gn:azo2976,EnsemblGenomes-Tr:CAL95592,InterPro:IPR013783,InterPro:IPR014756,InterPro:IPR014880,UniProtKB/TrEMBL:A1K9T7,NCBI_GP:CAL95592.1;Name=CAL95592.1;Note=Conserved hypothetical secreted protein. Homology to PP2677 of P. putida of 35%25 (trembl|Q88JH2(SRS)). No domains predicted. Signal peptide present. No TMH detected.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95592.1;transl_table=11
AM406670.1	EMBL	gene	3268088	3269080	.	+	.	ID=gene3027;Name=cphA;gbkey=Gene;gene=cphA;gene_biotype=protein_coding;locus_tag=azo2977
AM406670.1	EMBL	CDS	3268088	3269080	.	+	0	ID=cds2974;Parent=gene3027;Dbxref=EnsemblGenomes-Gn:azo2977,EnsemblGenomes-Tr:CAL95593,GOA:A1K9T8,InterPro:IPR001279,UniProtKB/TrEMBL:A1K9T8,NCBI_GP:CAL95593.1;Name=CAL95593.1;Note=Conserved Hypothetical protein (pir:H95862%3B 47%25 identity )%2C putative hydrolase (TREMBL: Q88JH1%3B 54%25 identity%2C 66%25 similarity) putative cyclase (TREMBL: Q93IZ0) putative alkylsufatase/betalactamase (rba:RB11502) Metallo beta lactamase superfamily (Pfam) Signal P%3B TMHMM reporting transmembrane helices S18: ribosomal protein S18%3B~High confidence in function and specificity;gbkey=CDS;gene=cphA;product=putative beta lactamase precursor;protein_id=CAL95593.1;transl_table=11
AM406670.1	EMBL	gene	3269103	3271517	.	+	.	ID=gene3028;Name=azo2978;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2978
AM406670.1	EMBL	CDS	3269103	3271517	.	+	0	ID=cds2975;Parent=gene3028;Dbxref=EnsemblGenomes-Gn:azo2978,EnsemblGenomes-Tr:CAL95594,GOA:A1K9T9,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1K9T9,NCBI_GP:CAL95594.1;Name=CAL95594.1;Note=Similar to FepA%2C an iron regulated outer membrane protein. FepA is a receptor for the siderophore complex ferric enterobactin and for colcins B and D. INVOLVED IN THE INITIAL STEP OF IRON UPTAKE BY BINDING FERRIC ENTEROBACTIN THAT ALLOWS E. COLI TO EXTRACT IRON FROM THE ENVIRONMENT. Probable tonB-dependent receptor yncD precursor. InterPro: TonB-dependent receptor protein.%3B~High confidence in function and specificity;gbkey=CDS;product=putative TonB-dependent receptor;protein_id=CAL95594.1;transl_table=11
AM406670.1	EMBL	gene	3271523	3272992	.	+	.	ID=gene3029;Name=elmS;gbkey=Gene;gene=elmS;gene_biotype=protein_coding;locus_tag=azo2979
AM406670.1	EMBL	CDS	3271523	3272992	.	+	0	ID=cds2976;Parent=gene3029;Dbxref=EnsemblGenomes-Gn:azo2979,EnsemblGenomes-Tr:CAL95595,GOA:A1K9U0,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR011712,UniProtKB/TrEMBL:A1K9U0,NCBI_GP:CAL95595.1;Name=CAL95595.1;Note=Putative two-component sensor histidine kinase%2C%3B~Specificity unclear;gbkey=CDS;gene=elmS;product=putative two-component sensor histidine kinase;protein_id=CAL95595.1;transl_table=11
AM406670.1	EMBL	gene	3273206	3273850	.	+	.	ID=gene3030;Name=gacA;gbkey=Gene;gene=gacA;gene_biotype=protein_coding;locus_tag=azo2980
AM406670.1	EMBL	CDS	3273206	3273850	.	+	0	ID=cds2977;Parent=gene3030;Dbxref=EnsemblGenomes-Gn:azo2980,EnsemblGenomes-Tr:CAL95596,GOA:A1K9U1,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1K9U1,NCBI_GP:CAL95596.1;Name=CAL95596.1;Note=Probable transcriptional regulator%2C LuxR family%2C%3B~Specificity unclear;gbkey=CDS;gene=gacA;product=probable transcriptional regulator%2C LuxR family;protein_id=CAL95596.1;transl_table=11
AM406670.1	EMBL	gene	3274283	3276310	.	+	.	ID=gene3031;Name=azo2981;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2981
AM406670.1	EMBL	CDS	3274283	3276310	.	+	0	ID=cds2978;Parent=gene3031;Dbxref=EnsemblGenomes-Gn:azo2981,EnsemblGenomes-Tr:CAL95597,GOA:A1K9U2,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR013702,InterPro:IPR019494,UniProtKB/TrEMBL:A1K9U2,NCBI_GP:CAL95597.1;Name=CAL95597.1;Note=Putative methyl-accepting chemotaxis protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative methyl-accepting chemotaxis protein;protein_id=CAL95597.1;transl_table=11
AM406670.1	EMBL	gene	3276637	3276912	.	-	.	ID=gene3032;Name=azo2982;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2982
AM406670.1	EMBL	CDS	3276637	3276912	.	-	0	ID=cds2979;Parent=gene3032;Dbxref=EnsemblGenomes-Gn:azo2982,EnsemblGenomes-Tr:CAL95598,InterPro:IPR025354,UniProtKB/TrEMBL:A1K9U3,NCBI_GP:CAL95598.1;Name=CAL95598.1;Note=Conserved hypothetical protein. Homology to an orf of M. magnetotacticum of 33%25 (ZP_00053175). No domains predicted. No TMHs. No signal peptide;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95598.1;transl_table=11
AM406670.1	EMBL	gene	3277196	3278320	.	-	.	ID=gene3033;Name=azo2983;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2983
AM406670.1	EMBL	CDS	3277196	3278320	.	-	0	ID=cds2980;Parent=gene3033;Dbxref=EnsemblGenomes-Gn:azo2983,EnsemblGenomes-Tr:CAL95599,GOA:A1K762,InterPro:IPR002559,UniProtKB/TrEMBL:A1K762,NCBI_GP:CAL95599.1;Name=CAL95599.1;Note=Putative Transposase%2C38%25 identity(55%25 similarity)to TrEMBL%3BQ877R1%2C Putative receptor protein (Transposase) [BT1893] [Bacteroides thetaiotaomicron VPI-5482]. Has PF01609:Transposase DDE domain%3BTransposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily%2C which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4 P03835%2C IS421 P11901%2C IS5377 Q45620%2C IS427 %2C IS402%2C IS1355 O69604%2C IS5%2Cwhich was original isolated in bacteriophage lambda. IPR002559:Transposase_11. GO:0004872%3BMolecular function: receptor activity. Signal peptide present. NO TMH reported present.%3B~Family membership;gbkey=CDS;product=putative Transposase;protein_id=CAL95599.1;transl_table=11
AM406670.1	EMBL	gene	3278702	3279538	.	+	.	ID=gene3034;Name=azo2984;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2984
AM406670.1	EMBL	CDS	3278702	3279538	.	+	0	ID=cds2981;Parent=gene3034;Dbxref=EnsemblGenomes-Gn:azo2984,EnsemblGenomes-Tr:CAL95600,InterPro:IPR013424,UniProtKB/TrEMBL:A1K9U5,NCBI_GP:CAL95600.1;Name=CAL95600.1;Note=Hypothetical secreted protein. no homology to the data bank. Pfam: DUF1555. signal peptide. TMH in signal peptide;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95600.1;transl_table=11
AM406670.1	EMBL	gene	3279788	3280681	.	+	.	ID=gene3035;Name=tnkS;gbkey=Gene;gene=tnkS;gene_biotype=protein_coding;locus_tag=azo2985
AM406670.1	EMBL	CDS	3279788	3280681	.	+	0	ID=cds2982;Parent=gene3035;Dbxref=EnsemblGenomes-Gn:azo2985,EnsemblGenomes-Tr:CAL95601,GOA:A1K9U6,InterPro:IPR002110,InterPro:IPR020683,UniProtKB/TrEMBL:A1K9U6,NCBI_GP:CAL95601.1;Name=CAL95601.1;Note=Tankyrase 2 (EC 2.4.2.30) (TANK2) (Tankyrase II) (TNKS-2) (TRF1- interacting ankyrin-related ADP-ribose polymerase 2) (Tankyrase-like protein) (Tankyrase-related protein). May regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles. Has PARP activity and can modify TRF1 and thereby contribute to the regulation of telomere length. TREMBL:Q800E0:34%25%3B Q8YTG9:36%25 identity. InterPro: Ankyrin-repeat Mop: molybdenum-pterin binding domain Presence of signal peptide (SignalP) but absence of transmembrane helices%3B~Function unclear;gbkey=CDS;gene=tnkS;product=putative tankyrase type protein;protein_id=CAL95601.1;transl_table=11
AM406670.1	EMBL	gene	3280842	3281492	.	-	.	ID=gene3036;Name=azo2986;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2986
AM406670.1	EMBL	CDS	3280842	3281492	.	-	0	ID=cds2983;Parent=gene3036;Dbxref=EnsemblGenomes-Gn:azo2986,EnsemblGenomes-Tr:CAL95602,GOA:A1K9U7,InterPro:IPR029063,UniProtKB/TrEMBL:A1K9U7,NCBI_GP:CAL95602.1;Name=CAL95602.1;Note=Similar to TREMBL:Q82SQ0 (50%25 identity %2C67%25 similarity).%3B~Function unclear;gbkey=CDS;product=putative methyltransferase;protein_id=CAL95602.1;transl_table=11
AM406670.1	EMBL	gene	3281489	3282034	.	-	.	ID=gene3037;Name=azo2987;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2987
AM406670.1	EMBL	CDS	3281489	3282034	.	-	0	ID=cds2984;Parent=gene3037;Dbxref=EnsemblGenomes-Gn:azo2987,EnsemblGenomes-Tr:CAL95603,GOA:A1K9U8,InterPro:IPR002734,InterPro:IPR024072,UniProtKB/TrEMBL:A1K9U8,NCBI_GP:CAL95603.1;Name=CAL95603.1;Note=Putative Dihydrofolate reductase.%3B~Function unclear;gbkey=CDS;product=dihydrofolate reductase%2C putative;protein_id=CAL95603.1;transl_table=11
AM406670.1	EMBL	gene	3282330	3282890	.	-	.	ID=gene3038;Name=chrR;gbkey=Gene;gene=chrR;gene_biotype=protein_coding;locus_tag=azo2988
AM406670.1	EMBL	CDS	3282330	3282890	.	-	0	ID=cds2985;Parent=gene3038;Dbxref=EnsemblGenomes-Gn:azo2988,EnsemblGenomes-Tr:CAL95604,GOA:A1K9U9,InterPro:IPR005025,InterPro:IPR029039,UniProtKB/TrEMBL:A1K9U9,NCBI_GP:CAL95604.1;Name=CAL95604.1;Note=Probable chromate reductase. Homology to chrR of E. coli of 49%25 (tremblnew|AAK62985). Reduction of chromate (Cr(VI)) to Cr(III).no no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=chrR;product=probable chromate reductase;protein_id=CAL95604.1;transl_table=11
AM406670.1	EMBL	gene	3283201	3285402	.	+	.	ID=gene3039;Name=katG;gbkey=Gene;gene=katG;gene_biotype=protein_coding;locus_tag=azo2989
AM406670.1	EMBL	CDS	3283201	3285402	.	+	0	ID=cds2986;Parent=gene3039;Dbxref=EnsemblGenomes-Gn:azo2989,EnsemblGenomes-Tr:CAL95605,GOA:A1K9V0,InterPro:IPR000763,InterPro:IPR002016,InterPro:IPR010255,InterPro:IPR019793,InterPro:IPR019794,NCBI_GP:CAL95605.1;Name=CAL95605.1;Note=Peroxidase/catalase (EC 1.11.1.6). Bifunctional exhibiting both a catalase and broad- spectrum peroxidase activities.Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions.Bacterial catalase-peroxidases are approximately twice the size of plant and fungal haem peroxidases. Sequence analysis suggests that this doubling in length can be ascribed to gene duplication%2C whereby each half is%3B~High confidence in function and specificity;gbkey=CDS;gene=katG;product=putative catalase/peroxidase;protein_id=CAL95605.1;transl_table=11
AM406670.1	EMBL	gene	3285452	3286078	.	-	.	ID=gene3040;Name=azo2990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2990
AM406670.1	EMBL	CDS	3285452	3286078	.	-	0	ID=cds2987;Parent=gene3040;Dbxref=EnsemblGenomes-Gn:azo2990,EnsemblGenomes-Tr:CAL95606,GOA:A1K9V1,InterPro:IPR000868,UniProtKB/TrEMBL:A1K9V1,NCBI_GP:CAL95606.1;Name=CAL95606.1;Note=Similar to TREMBL:Q88PY7 (90%25 identity)%3B SWISSPROT:P21367 (87%25 identity)%3B TREMBL:Q7W0U0 (85%25 identity). InterPro (IPR000868): Isochorismatase hydrolase. Pfam (PF00857): Isochorismatase family.%3B~Specificity unclear;gbkey=CDS;product=putative isochorismatase;protein_id=CAL95606.1;transl_table=11
AM406670.1	EMBL	gene	3286186	3287082	.	-	.	ID=gene3041;Name=azo2991;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2991
AM406670.1	EMBL	CDS	3286186	3287082	.	-	0	ID=cds2988;Parent=gene3041;Dbxref=EnsemblGenomes-Gn:azo2991,EnsemblGenomes-Tr:CAL95607,InterPro:IPR003829,InterPro:IPR008778,InterPro:IPR011051,InterPro:IPR012093,InterPro:IPR014710,UniProtKB/TrEMBL:A1K9V2,NCBI_GP:CAL95607.1;Name=CAL95607.1;Note=Hypothetical protein PA2418. Pirin related protein of unknown function. TREMBL:Q7VUX8: 69%25 identity%2C 81%25 similarity. InterPro:IPR008778%3B Pirin_C. IPR003829%3B Pirin_N. Pfam: PF02678%3B Pirin%3B 1. PF05726%3B Pirin_C InterPro: DUF209 No signal peptide present (Signal P predicted). No transmembrane helices present (TMHMM predicted). hypD: hydrogenase expression/formation pr%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95607.1;transl_table=11
AM406670.1	EMBL	gene	3287206	3288111	.	+	.	ID=gene3042;Name=azo2992;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2992
AM406670.1	EMBL	CDS	3287206	3288111	.	+	0	ID=cds2989;Parent=gene3042;Dbxref=EnsemblGenomes-Gn:azo2992,EnsemblGenomes-Tr:CAL95608,GOA:A1K9V3,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K9V3,NCBI_GP:CAL95608.1;Name=CAL95608.1;Note=Probable transcriptional regulator%2C LysR family%2C%3B~Family membership;gbkey=CDS;product=probable transcriptional regulator%2C LysR family;protein_id=CAL95608.1;transl_table=11
AM406670.1	EMBL	gene	3288180	3288830	.	+	.	ID=gene3043;Name=azo2993;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2993
AM406670.1	EMBL	CDS	3288180	3288830	.	+	0	ID=cds2990;Parent=gene3043;Dbxref=EnsemblGenomes-Gn:azo2993,EnsemblGenomes-Tr:CAL95609,GOA:A1K9V4,InterPro:IPR002734,InterPro:IPR024072,UniProtKB/TrEMBL:A1K9V4,NCBI_GP:CAL95609.1;Name=CAL95609.1;Note=DNA-binding protein or Dihydrofolat-Reductase ???%3B~Function unclear;gbkey=CDS;product=DNA-binding protein;protein_id=CAL95609.1;transl_table=11
AM406670.1	EMBL	gene	3288843	3291056	.	-	.	ID=gene3044;Name=fpvA2;gbkey=Gene;gene=fpvA2;gene_biotype=protein_coding;locus_tag=azo2994
AM406670.1	EMBL	CDS	3288843	3291056	.	-	0	ID=cds2991;Parent=gene3044;Dbxref=EnsemblGenomes-Gn:azo2994,EnsemblGenomes-Tr:CAL95610,GOA:A1K9V5,InterPro:IPR000531,InterPro:IPR010105,InterPro:IPR010917,InterPro:IPR012910,UniProtKB/TrEMBL:A1K9V5,NCBI_GP:CAL95610.1;Name=CAL95610.1;Note=Iron-regulated outer membrane protein. TonB-dependent receptor protein. Homolog to fpvA%2C a ferripyoverdine receptor precursor in P. aeruginosa. Similar to PupA protein of P. putida WCS%2Cthis protein is a receptor for the iron-bound form of pesudobactin%2C a compound structurally very%3B~High confidence in function and specificity;gbkey=CDS;gene=fpvA2;product=probable TonB-dependent receptor;protein_id=CAL95610.1;transl_table=11
AM406670.1	EMBL	gene	3291403	3291858	.	-	.	ID=gene3045;Name=azo2995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2995
AM406670.1	EMBL	CDS	3291403	3291858	.	-	0	ID=cds2992;Parent=gene3045;Dbxref=EnsemblGenomes-Gn:azo2995,EnsemblGenomes-Tr:CAL95611,UniProtKB/TrEMBL:A1K9V6,NCBI_GP:CAL95611.1;Name=CAL95611.1;Note=Conserved hypothetical membrane protein. Homology to IL2513 of Idiomarina loihiensis of 37%25 (gnl|keqq|ilo:IL2513(KEGG)). no domains predicted. no signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95611.1;transl_table=11
AM406670.1	EMBL	gene	3291855	3293027	.	-	.	ID=gene3046;Name=azo2996;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2996
AM406670.1	EMBL	CDS	3291855	3293027	.	-	0	ID=cds2993;Parent=gene3046;Dbxref=EnsemblGenomes-Gn:azo2996,EnsemblGenomes-Tr:CAL95612,UniProtKB/TrEMBL:A1K9V7,NCBI_GP:CAL95612.1;Name=CAL95612.1;Note=Conserved hypothetical membrane protein. Homology to PA2403 of Pseudomonas aeruginosa of 38%25 (trembl|Q8G8F6). Has 3 copies of PF03929%2C PepSY-associated TM helix%3BIPR005625 pEPsy_tm%3B This domain represents a conserved TM helix found in bacterial proteins. Has PF03413%2C Peptidase propeptide and YPEB domain%3B IPR005075%2CPropep_PepSY:This region is likely to have an protease inhibitory function (personal obs:C Yeats). This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase %26 Bacillus subtilis YPEB. no signal peptide. 4TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95612.1;transl_table=11
AM406670.1	EMBL	gene	3293030	3295177	.	-	.	ID=gene3047;Name=fhuF;gbkey=Gene;gene=fhuF;gene_biotype=protein_coding;locus_tag=azo2997
AM406670.1	EMBL	CDS	3293030	3295177	.	-	0	ID=cds2994;Parent=gene3047;Dbxref=EnsemblGenomes-Gn:azo2997,EnsemblGenomes-Tr:CAL95613,GOA:A1K9V8,InterPro:IPR000531,InterPro:IPR010105,InterPro:IPR012910,UniProtKB/TrEMBL:A1K9V8,NCBI_GP:CAL95613.1;Name=CAL95613.1;Note=Ferrioxamine B receptor precursor%2C FhuF. Iron-regulated outer membrane protein that bind and uptake ferrioxamine in association with the TonB protein. Involved in the reduction of ferric iron in cytoplasmic ferrioxamine B. Binds 1 2Fe-2S cluster. In e.coli the fhuF gene reacts very sensitive to minor changes of Fe2+ and Fur(Ferric uptake regulator). SWISSPROT: FOXA_SALTY. Prim. accession #:Q56145 EMBL: AE008712%3B AAL19318.1%3B AF060876%3B AAC15464.1%3B U62282%3B AAB04552.1%3B InterPro:IPR000531%3B TonB_boxC. Pfam: PF00593%3B TonB_dep_Rec%3B 1. PROSITE: PS00430%3B TONB_DEPENDENT_REC_1%3B FALSE_NEG. PS01156%3B TONB_DEPENDENT_REC_2%3B FALSE_NEG.%3B~High confidence in function and specificity;gbkey=CDS;gene=fhuF;product=putative TonB-dependent receptor;protein_id=CAL95613.1;transl_table=11
AM406670.1	EMBL	gene	3295639	3296769	.	+	.	ID=gene3048;Name=azo2998;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2998
AM406670.1	EMBL	CDS	3295639	3296769	.	+	0	ID=cds2995;Parent=gene3048;Dbxref=EnsemblGenomes-Gn:azo2998,EnsemblGenomes-Tr:CAL95614,GOA:A1K9V9,InterPro:IPR000182,InterPro:IPR016181,InterPro:IPR029058,UniProtKB/TrEMBL:A1K9V9,NCBI_GP:CAL95614.1;Name=CAL95614.1;Note=Hypothetical protein predicted by Glimmer/Critica. InterPro: Esterase/lipase/thioesterase family active site (IPR000379)%2C GCN5-realted N-actetyltransferase (IPR000182). no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95614.1;transl_table=11
AM406670.1	EMBL	gene	3296777	3297358	.	-	.	ID=gene3049;Name=azo2999;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo2999
AM406670.1	EMBL	CDS	3296777	3297358	.	-	0	ID=cds2996;Parent=gene3049;Dbxref=EnsemblGenomes-Gn:azo2999,EnsemblGenomes-Tr:CAL95615,InterPro:IPR006311,InterPro:IPR009045,InterPro:IPR010275,UniProtKB/TrEMBL:A1K9W0,NCBI_GP:CAL95615.1;Name=CAL95615.1;Note=Conserved hypothetical secreted protein. Homology to NE2572 of N.europaea of 46%25 (tremble:Q82RZ3). Has PF05951%2C Bacterial protein of unknown function (DUF882)%3BIPR010275%3B This family consists of a series of hypothetical bacterial proteins of unknown function. Signal Peptide Present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95615.1;transl_table=11
AM406670.1	EMBL	gene	3297392	3299023	.	-	.	ID=gene3050;Name=ycbB;gbkey=Gene;gene=ycbB;gene_biotype=protein_coding;locus_tag=azo3000
AM406670.1	EMBL	CDS	3297392	3299023	.	-	0	ID=cds2997;Parent=gene3050;Dbxref=EnsemblGenomes-Gn:azo3000,EnsemblGenomes-Tr:CAL95616,GOA:A1K9W1,InterPro:IPR002477,InterPro:IPR005490,UniProtKB/TrEMBL:A1K9W1,NCBI_GP:CAL95616.1;Name=CAL95616.1;Note=Putative periplasmic protein [ycbB]%2C 39%25 identity(57%25 similarity) to TrEMBL%3BQ82RZ2.Q9A853(30%25 identity) Signal Peptide Present. Has PF01471%2C Putative peptidoglycan binding domain%3B IPR002477 PG_binding%3B This domain%2C peptidoglycan binding domain 1%2C may have a general peptidoglycan binding function. It is composed of three helices and is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. * Muramoyl-pentapeptide carboxypeptidase (EC:3.4.17.8) * N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall) hydrolase%2C autolysin%2C EC:3.5.1.28) * Autolytic lysozyme (1%2C4--N-acetylmuramidase%2C autolysin%2C EC:3.2.1.17) * Membrane-bound lytic murein transglycosylase B%3B~Family membership;gbkey=CDS;gene=ycbB;product=putative periplasmic protein;protein_id=CAL95616.1;transl_table=11
AM406670.1	EMBL	gene	3299083	3300033	.	-	.	ID=gene3051;Name=azo3001;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3001
AM406670.1	EMBL	CDS	3299083	3300033	.	-	0	ID=cds2998;Parent=gene3051;Dbxref=EnsemblGenomes-Gn:azo3001,EnsemblGenomes-Tr:CAL95617,InterPro:IPR001763,InterPro:IPR015414,UniProtKB/TrEMBL:A1K9W2,NCBI_GP:CAL95617.1;Name=CAL95617.1;Note=Conserved hypothetical membrane protein. Homology to XAC149 of X. axonopodis of 41%25 (trembl|Q8PLP4(SRS)). Pfam: DedA family. This family combines the DedA related proteins and YIAN/YGIK family. Members of this family are not functionally characterised. These proteins contain multiple predicted transmembrane regions. no signal peptide. 4 TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95617.1;transl_table=11
AM406670.1	EMBL	gene	3300159	3300980	.	-	.	ID=gene3052;Name=hutG;gbkey=Gene;gene=hutG;gene_biotype=protein_coding;locus_tag=azo3002
AM406670.1	EMBL	CDS	3300159	3300980	.	-	0	ID=cds2999;Parent=gene3052;Dbxref=EnsemblGenomes-Gn:azo3002,EnsemblGenomes-Tr:CAL95618,GOA:A1K9W3,InterPro:IPR002508,InterPro:IPR007709,InterPro:IPR010247,UniProtKB/TrEMBL:A1K9W3,NCBI_GP:CAL95618.1;Name=CAL95618.1;Note=Conserved hypothetical formylglutamte amindohyrolase. Homology to hutG of B. bronchiseptica of 53%25 (trembl|Q7WEA2). Catalyses the terminal reaction in the five-step pathway for histidine utilisation. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=hutG;product=conserved hypothetical formylglutamte amindohyrolase;protein_id=CAL95618.1;transl_table=11
AM406670.1	EMBL	gene	3300977	3302122	.	-	.	ID=gene3053;Name=azo3003;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3003
AM406670.1	EMBL	CDS	3300977	3302122	.	-	0	ID=cds3000;Parent=gene3053;Dbxref=EnsemblGenomes-Gn:azo3003,EnsemblGenomes-Tr:CAL95619,GOA:A1K9W4,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1K9W4,NCBI_GP:CAL95619.1;Name=CAL95619.1;Note=Conserved hypothetical transcriptional regulator%2CLysR family. Similar to SWISSPROT: sprot|NTCB_SYNP7 (18%25 Synechococcus sp. (strain PCC 7942) (Anacystis nidulans R2)%2C nitrogen assimilation transcriptional activator NtcB) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2C lysR family. HTH reporting nucleic acid binding motif.%3B~Family membership;gbkey=CDS;product=conserved hypothetical transcriptional regulator%2C LysR family;protein_id=CAL95619.1;transl_table=11
AM406670.1	EMBL	gene	3302210	3303394	.	+	.	ID=gene3054;Name=soxB;gbkey=Gene;gene=soxB;gene_biotype=protein_coding;locus_tag=azo3004
AM406670.1	EMBL	CDS	3302210	3303394	.	+	0	ID=cds3001;Parent=gene3054;Dbxref=EnsemblGenomes-Gn:azo3004,EnsemblGenomes-Tr:CAL95620,GOA:A1K9W5,InterPro:IPR006076,UniProtKB/TrEMBL:A1K9W5,NCBI_GP:CAL95620.1;Name=CAL95620.1;Note=Sarcosine oxidase%2C subunit beta counts to the FAD dependent oxidoreductases. Similar to trembl|Q82M71 (29%25) and to trembl|Q9V0K7 (26%25). Pfam (PF01266): D-amino acid oxidase ProSite (PS50205): NAD binding site ProSite (PS50204): UBA/THIF-type NAD/FAD binding fold%3B~Specificity unclear;gbkey=CDS;gene=soxB;product=putative sarcosine oxidase%2C subunit beta;protein_id=CAL95620.1;transl_table=11
AM406670.1	EMBL	gene	3303449	3304201	.	+	.	ID=gene3055;Name=etfB4;gbkey=Gene;gene=etfB4;gene_biotype=protein_coding;locus_tag=azo3005
AM406670.1	EMBL	CDS	3303449	3304201	.	+	0	ID=cds3002;Parent=gene3055;Dbxref=EnsemblGenomes-Gn:azo3005,EnsemblGenomes-Tr:CAL95621,GOA:A1K9W6,InterPro:IPR012255,InterPro:IPR014729,InterPro:IPR014730,UniProtKB/TrEMBL:A1K9W6,NCBI_GP:CAL95621.1;Name=CAL95621.1;Note=Probable electron transfer flavoprotein%2C beta subunit. Homology to etfB of B. japonicum of 54%25 (sprot|ETFB_BRAJA). The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein beta-subunit (IPR000049) Pfam: Electron transfer flavoprotein beta subunit no signal peptide no TMHS%3B~High confidence in function and specificity;gbkey=CDS;gene=etfB4;product=probable electron transfer flavoprotein%2C beta subunit;protein_id=CAL95621.1;transl_table=11
AM406670.1	EMBL	gene	3304218	3305165	.	+	.	ID=gene3056;Name=etfA4;gbkey=Gene;gene=etfA4;gene_biotype=protein_coding;locus_tag=azo3006
AM406670.1	EMBL	CDS	3304218	3305165	.	+	0	ID=cds3003;Parent=gene3056;Dbxref=EnsemblGenomes-Gn:azo3006,EnsemblGenomes-Tr:CAL95622,GOA:A1K9W7,InterPro:IPR001308,InterPro:IPR014729,InterPro:IPR014730,InterPro:IPR014731,InterPro:IPR018206,InterPro:IPR029035,UniProtKB/TrEMBL:A1K9W7,NCBI_GP:CAL95622.1;Name=CAL95622.1;Note=Probable electron transfer flavoprotein%2C alpha subunit. Homology to etfA of B. japonicum of 49%25 (sprot|ETFA_BRAJA) The electron transfer flavoprotein serves as a specific electron acceptor for some dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase)(By similarity). InterPro: Electron transfer flavoprotein alpha-subunit (IPR001308) Pfam: Electron transfer flavoprotein alpha subunit no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=etfA4;product=probable electron transfer flavoprotein%2C alpha subunit;protein_id=CAL95622.1;transl_table=11
AM406670.1	EMBL	gene	3305177	3305785	.	+	.	ID=gene3057;Name=azo3007;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3007
AM406670.1	EMBL	CDS	3305177	3305785	.	+	0	ID=cds3004;Parent=gene3057;Dbxref=EnsemblGenomes-Gn:azo3007,EnsemblGenomes-Tr:CAL95623,InterPro:IPR010282,InterPro:IPR011051,InterPro:IPR014710,UniProtKB/TrEMBL:A1K9W8,NCBI_GP:CAL95623.1;Name=CAL95623.1;Note=Conserved hypothetical protein. Homology to BB1278 of B.bronchiseptica of 35%25 (trembl:Q7WMW2). Has PF05962%2CBacterial protein of unknown function (DUF886)%3BIPR010282%3B This family consists of several hypothetical bacterial proteins of unknown function. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95623.1;transl_table=11
AM406670.1	EMBL	gene	3305802	3307487	.	+	.	ID=gene3058;Name=etf2;gbkey=Gene;gene=etf2;gene_biotype=protein_coding;locus_tag=azo3008
AM406670.1	EMBL	CDS	3305802	3307487	.	+	0	ID=cds3005;Parent=gene3058;Dbxref=EnsemblGenomes-Gn:azo3008,EnsemblGenomes-Tr:CAL95624,GOA:A1K9W9,InterPro:IPR003042,InterPro:IPR007859,UniProtKB/TrEMBL:A1K9W9,NCBI_GP:CAL95624.1;Name=CAL95624.1;Note=Probable electron transfer flavoprotein-ubiquinone oxidoreductase. Homology to etfdh of H. sapiens of 53%25 (sprot|ETFD_HUMAN) Accepts electrons and reduces ubiquinone. Pfam: FAD_binding_3%3B ETF_QO no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=etf2;product=probable electron transfer flavoprotein-ubiquinone oxidoreductase;protein_id=CAL95624.1;transl_table=11
AM406670.1	EMBL	gene	3307684	3308286	.	-	.	ID=gene3059;Name=azo3009;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3009
AM406670.1	EMBL	CDS	3307684	3308286	.	-	0	ID=cds3006;Parent=gene3059;Dbxref=EnsemblGenomes-Gn:azo3009,EnsemblGenomes-Tr:CAL95625,GOA:A1K9X0,InterPro:IPR001387,InterPro:IPR010982,InterPro:IPR011051,InterPro:IPR013096,InterPro:IPR014710,UniProtKB/TrEMBL:A1K9X0,NCBI_GP:CAL95625.1;Name=CAL95625.1;Note=Putative DNA binding helix-turn helix protein%2C%3B~Family membership;gbkey=CDS;product=putative DNA binding helix-turn helix protein;protein_id=CAL95625.1;transl_table=11
AM406670.1	EMBL	gene	3308451	3309848	.	+	.	ID=gene3060;Name=glnT;gbkey=Gene;gene=glnT;gene_biotype=protein_coding;locus_tag=azo3010
AM406670.1	EMBL	CDS	3308451	3309848	.	+	0	ID=cds3007;Parent=gene3060;Dbxref=EnsemblGenomes-Gn:azo3010,EnsemblGenomes-Tr:CAL95626,GOA:A1K9X1,InterPro:IPR008146,InterPro:IPR008147,InterPro:IPR014746,InterPro:IPR017536,InterPro:IPR027303,UniProtKB/TrEMBL:A1K9X1,NCBI_GP:CAL95626.1;Name=CAL95626.1;Note=Glutamine synthetase III plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. Similar to trembl|Q98A06 (58%25) and to sprot|GLN3_RHILP (38%25). Pfam (PF03951): Glutamine synthetase%2C beta-Grasp domain Pfam(PF00120): Glutamine synthetase%2C catalytic domain%3B~High confidence in function and specificity;gbkey=CDS;gene=glnT;product=glutamine synthetase III;protein_id=CAL95626.1;transl_table=11
AM406670.1	EMBL	gene	3309864	3310772	.	+	.	ID=gene3061;Name=glxB;gbkey=Gene;gene=glxB;gene_biotype=protein_coding;locus_tag=azo3011
AM406670.1	EMBL	CDS	3309864	3310772	.	+	0	ID=cds3008;Parent=gene3061;Dbxref=EnsemblGenomes-Gn:azo3011,EnsemblGenomes-Tr:CAL95627,GOA:A1K9X2,InterPro:IPR017932,InterPro:IPR029055,UniProtKB/TrEMBL:A1K9X2,NCBI_GP:CAL95627.1;Name=CAL95627.1;Note=Glutamine amidotransferase%2C class-II protein%2C glxB (purF). Similar to sprot|GLXB_RHIME (46%25) and to trembl|Q882P3 (49%25). Glutamine amidotransferase catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase). On the basis of sequence similarities two classes of GATase domains have been identified class-I and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase%2C which catalyses the first step in purine biosynthesis. InterPro (PF00310): Glutamine amidotransferase class-II%3B~High confidence in function and specificity;gbkey=CDS;gene=glxB;product=amido phosphoribosyltransferase;protein_id=CAL95627.1;transl_table=11
AM406670.1	EMBL	gene	3310760	3311452	.	+	.	ID=gene3062;Name=glxC;gbkey=Gene;gene=glxC;gene_biotype=protein_coding;locus_tag=azo3012
AM406670.1	EMBL	CDS	3310760	3311452	.	+	0	ID=cds3009;Parent=gene3062;Dbxref=EnsemblGenomes-Gn:azo3012,EnsemblGenomes-Tr:CAL95628,GOA:A1K9X3,InterPro:IPR002489,InterPro:IPR012061,UniProtKB/TrEMBL:A1K9X3,NCBI_GP:CAL95628.1;Name=CAL95628.1;Note=Probable protein GlxC. Similar to sprot|GLXC_RHIME (59%25) and to pir|A96211 (51%25). Pfam (PF01493): GXGXG%3B~Family membership;gbkey=CDS;gene=glxC;product=probable protein GlxC;protein_id=CAL95628.1;transl_table=11
AM406670.1	EMBL	gene	3311454	3312797	.	+	.	ID=gene3063;Name=glxD;gbkey=Gene;gene=glxD;gene_biotype=protein_coding;locus_tag=azo3013
AM406670.1	EMBL	CDS	3311454	3312797	.	+	0	ID=cds3010;Parent=gene3063;Dbxref=EnsemblGenomes-Gn:azo3013,EnsemblGenomes-Tr:CAL95629,GOA:A1K9X4,InterPro:IPR002932,InterPro:IPR013785,InterPro:IPR024188,UniProtKB/TrEMBL:A1K9X4,NCBI_GP:CAL95629.1;Name=CAL95629.1;Note=Glutamate synthase%2C large subunit. Similar to sprot|GLXD_RHIME (87%25). Glutamate synthase (GltS) is a complex iron-sulphur flavoprotein that catalyses the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia%2C a reaction in the bacterial%2C yeast and plant pathways for ammonia assimilation. Pfam: Conserved region in glutamate synthase%3B~Specificity unclear;gbkey=CDS;gene=glxD;product=glutamate synthase%2C large subunit;protein_id=CAL95629.1;transl_table=11
AM406670.1	EMBL	gene	3312866	3313204	.	+	.	ID=gene3064;Name=glnY;gbkey=Gene;gene=glnY;gene_biotype=protein_coding;locus_tag=azo3014
AM406670.1	EMBL	CDS	3312866	3313204	.	+	0	ID=cds3011;Parent=gene3064;Dbxref=EnsemblGenomes-Gn:azo3014,EnsemblGenomes-Tr:CAL95630,GOA:Q9EZQ4,InterPro:IPR002187,InterPro:IPR002332,InterPro:IPR011322,InterPro:IPR015867,UniProtKB/TrEMBL:Q9EZQ4,NCBI_GP:CAL95630.1;Name=CAL95630.1;Note=PII-like signal transmitter proteins are involved in the regulation of ammonium assimilation and nitrogen fixation. The PII-like proteins differed from each other in details of N-sensing. They were covalently modified by uridylylation upon nitrogen limitation. Similar to trembl|Q9EZQ4 (100%25) and to trembl|Q9RBK0 (78%25). Pfam: Nitrogen regulatory protein P-II%3B~High confidence in function and specificity;gbkey=CDS;gene=glnY;product=PII-like signal transmitter protein GlnY;protein_id=CAL95630.1;transl_table=11
AM406670.1	EMBL	gene	3313222	3314586	.	+	.	ID=gene3065;Name=amtY;gbkey=Gene;gene=amtY;gene_biotype=protein_coding;locus_tag=azo3015
AM406670.1	EMBL	CDS	3313222	3314586	.	+	0	ID=cds3012;Parent=gene3065;Dbxref=EnsemblGenomes-Gn:azo3015,EnsemblGenomes-Tr:CAL95631,GOA:A1K9X6,InterPro:IPR001905,InterPro:IPR024041,InterPro:IPR029020,UniProtKB/TrEMBL:A1K9X6,NCBI_GP:CAL95631.1;Name=CAL95631.1;Note=Ammonium transporter 1 member 2 (LeAMT1%3B2). Involved in high affinity ammonium uptake. TREMBL:Q8RP88: 100%25 identity (published) InterPro: IPR001905%3B Ammonium_transpt. IPR010256%3B RH_like_transpt. Pfam: PF00909%3B Ammonium_transp amt: ammonium transporter SignalP predicted signal peptide (probability 0.999) TMHMM predicted 11 transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;gene=amtY;product=ammonium transporter;protein_id=CAL95631.1;transl_table=11
AM406670.1	EMBL	gene	3314644	3315441	.	-	.	ID=gene3066;Name=azo3016;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3016
AM406670.1	EMBL	CDS	3314644	3315441	.	-	0	ID=cds3013;Parent=gene3066;Dbxref=EnsemblGenomes-Gn:azo3016,EnsemblGenomes-Tr:CAL95632,InterPro:IPR022224,UniProtKB/TrEMBL:A1K9X7,NCBI_GP:CAL95632.1;Name=CAL95632.1;Note=Conserved hypothetical secreted protein. Homology to ECA3203 of Erwinia carotovora of 58%25 (tremble:Q6D293). No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95632.1;transl_table=11
AM406670.1	EMBL	gene	3315684	3316808	.	-	.	ID=gene3067;Name=azo3017;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3017
AM406670.1	EMBL	CDS	3315684	3316808	.	-	0	ID=cds3014;Parent=gene3067;Dbxref=EnsemblGenomes-Gn:azo3017,EnsemblGenomes-Tr:CAL95633,GOA:A1K9X8,InterPro:IPR001702,InterPro:IPR002299,InterPro:IPR023614,UniProtKB/TrEMBL:A1K9X8,NCBI_GP:CAL95633.1;Name=CAL95633.1;Note=Outer membrane porin protein 32 precursor (OMP32). Forms anion selective channels.%3B~Specificity unclear;gbkey=CDS;product=outer membrane porin protein precursor;protein_id=CAL95633.1;transl_table=11
AM406670.1	EMBL	gene	3316976	3317098	.	-	.	ID=gene3068;Name=azo3018;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3018
AM406670.1	EMBL	CDS	3316976	3317098	.	-	0	ID=cds3015;Parent=gene3068;Dbxref=EnsemblGenomes-Gn:azo3018,EnsemblGenomes-Tr:CAL95634,UniProtKB/TrEMBL:A1K9X9,NCBI_GP:CAL95634.1;Name=CAL95634.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted .no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95634.1;transl_table=11
AM406670.1	EMBL	gene	3317346	3318281	.	+	.	ID=gene3069;Name=azo3019;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3019
AM406670.1	EMBL	CDS	3317346	3318281	.	+	0	ID=cds3016;Parent=gene3069;Dbxref=EnsemblGenomes-Gn:azo3019,EnsemblGenomes-Tr:CAL95635,GOA:A1K9Y0,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,UniProtKB/TrEMBL:A1K9Y0,NCBI_GP:CAL95635.1;Name=CAL95635.1;Note=Putative AraC family%2Ctranscriptional regulator%2C 28%25 Identity to TrEMBL%3BQ62GH5%2CQ6QEJ0%2CQ9HWT4 Has SMART%3BSM00342%2CHTH_ARAC%2C helix_turn_helix%2C arabinose operon control protein%3BIPR000005%3B Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' (HTH) motif. One major subfamily of these proteins is related to the arabinose operon regulatory protein AraC. Except for celD all of these proteins seem to be positive transcriptional factors.Although the sequences belonging to this family differ somewhat in length%2C in nearly every case the HTH motif is situated towards the C-terminus in the third quarter of most of the sequences. The minimal DNA binding domain spans roughly 100 residues and comprises two HTH subdomains%3B the classical HTH domain and another HTH subdomain with similarity to the classical HTH domain but with an insertion of one residue in the turn-region. The N-terminal and central regions of these proteins are presumed to interact with effector molecules and may be involved in dimerization.%3B~Conserved hypothetical protein;gbkey=CDS;product=putative AraC-like transcriptional regulator;protein_id=CAL95635.1;transl_table=11
AM406670.1	EMBL	gene	3318463	3319443	.	+	.	ID=gene3070;Name=azo3020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3020
AM406670.1	EMBL	CDS	3318463	3319443	.	+	0	ID=cds3017;Parent=gene3070;Dbxref=EnsemblGenomes-Gn:azo3020,EnsemblGenomes-Tr:CAL95636,InterPro:IPR006311,InterPro:IPR025737,UniProtKB/TrEMBL:A1K9Y1,NCBI_GP:CAL95636.1;Name=CAL95636.1;Note=Conserved hypothetical secreted protein. Homology to aciad2673 of Acinetobacter sp. of 53%25 (trembl|Q6F937). no domains reported. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95636.1;transl_table=11
AM406670.1	EMBL	gene	3319525	3320985	.	+	.	ID=gene3071;Name=thmS2;gbkey=Gene;gene=thmS2;gene_biotype=protein_coding;locus_tag=azo3021
AM406670.1	EMBL	CDS	3319525	3320985	.	+	0	ID=cds3018;Parent=gene3071;Dbxref=EnsemblGenomes-Gn:azo3021,EnsemblGenomes-Tr:CAL95637,GOA:A1K9Y2,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR029510,UniProtKB/TrEMBL:A1K9Y2,NCBI_GP:CAL95637.1;Name=CAL95637.1;Note=Probable succinate semialdehyde dehydrogenase [NAD(P)+]. Homology to thmS of Pseudonocardia sp. K1 of 46%25 (trembl|Q9F3V7). Is capable of oxidizing substrates using NADP as cofactor. Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=thmS2;product=probable succinate semialdehyde dehydrogenase [NAD(P)+];protein_id=CAL95637.1;transl_table=11
AM406670.1	EMBL	gene	3321256	3323430	.	+	.	ID=gene3072;Name=exaA4;gbkey=Gene;gene=exaA4;gene_biotype=protein_coding;locus_tag=azo3022
AM406670.1	EMBL	CDS	3321256	3323430	.	+	0	ID=cds3019;Parent=gene3072;Dbxref=EnsemblGenomes-Gn:azo3022,EnsemblGenomes-Tr:CAL95638,GOA:A1K9Y3,InterPro:IPR002372,InterPro:IPR009056,InterPro:IPR011047,InterPro:IPR017512,InterPro:IPR018391,InterPro:IPR027295,UniProtKB/TrEMBL:A1K9Y3,NCBI_GP:CAL95638.1;Name=CAL95638.1;Note=Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol%2C but not highly active on methanol. 37%25 Bac_PQQ.IPR002372%3B Bac_PQQ_repeat. Pfam:PF01011%3B PQQ%3B 2. Signal peptide:present.%3B~High confidence in function and specificity;gbkey=CDS;gene=exaA4;product=putative quinoprotein ethanol dehydrogenase;protein_id=CAL95638.1;transl_table=11
AM406670.1	EMBL	gene	3323986	3326103	.	+	.	ID=gene3073;Name=azo3023;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3023
AM406670.1	EMBL	CDS	3323986	3326103	.	+	0	ID=cds3020;Parent=gene3073;Dbxref=EnsemblGenomes-Gn:azo3023,EnsemblGenomes-Tr:CAL95639,GOA:A1K9Y4,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1K9Y4,NCBI_GP:CAL95639.1;Name=CAL95639.1;Note=Probable outer membrane receptor TonB-dependent for iron transport. 41%25 AAC74533.1 InterPro: IPR000531 TonB_receptor.IPR010105%3B TonB_siderophor. Pfam: PF00593%3B TonB_dep_Rec%3B 1. TonB-box domain%3B~High confidence in function and specificity;gbkey=CDS;product=probable TonB-dependent receptor;protein_id=CAL95639.1;transl_table=11
AM406670.1	EMBL	gene	3326109	3326648	.	+	.	ID=gene3074;Name=azo3024;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3024
AM406670.1	EMBL	CDS	3326109	3326648	.	+	0	ID=cds3021;Parent=gene3074;Dbxref=EnsemblGenomes-Gn:azo3024,EnsemblGenomes-Tr:CAL95640,InterPro:IPR005180,UniProtKB/TrEMBL:A1K9Y5,NCBI_GP:CAL95640.1;Name=CAL95640.1;Note=Hypotheical secreted protein. No homology of the entire protein to the data bank. no domains predicted. no TMHs. signal peptide.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95640.1;transl_table=11
AM406670.1	EMBL	gene	3326814	3327098	.	+	.	ID=gene3075;Name=azo3025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3025
AM406670.1	EMBL	CDS	3326814	3327098	.	+	0	ID=cds3022;Parent=gene3075;Dbxref=EnsemblGenomes-Gn:azo3025,EnsemblGenomes-Tr:CAL95641,InterPro:IPR007138,InterPro:IPR011008,UniProtKB/TrEMBL:A1K9Y6,NCBI_GP:CAL95641.1;Name=CAL95641.1;Note=Conserved hypothetical protein. Homology to ra0176 of S. meliloti of 31%25 (trembl|Q930L9). Pfam: Uncharacterized ACR%2C YneC family. no signal peptide. no TMHS;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95641.1;transl_table=11
AM406670.1	EMBL	gene	3327420	3329078	.	+	.	ID=gene3076;Name=azo3026;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3026
AM406670.1	EMBL	CDS	3327420	3329078	.	+	0	ID=cds3023;Parent=gene3076;Dbxref=EnsemblGenomes-Gn:azo3026,EnsemblGenomes-Tr:CAL95642,UniProtKB/TrEMBL:A1K9Y7,NCBI_GP:CAL95642.1;Name=CAL95642.1;Note=Conserved hypothetical secreted protein. Homology to Reut02004453 of Ralstonia metallidurans of 38%25 (gi|48768314|ref|ZP_00272664.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95642.1;transl_table=11
AM406670.1	EMBL	gene	3329161	3329490	.	+	.	ID=gene3077;Name=azo3027;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3027
AM406670.1	EMBL	CDS	3329161	3329490	.	+	0	ID=cds3024;Parent=gene3077;Dbxref=EnsemblGenomes-Gn:azo3027,EnsemblGenomes-Tr:CAL95643,UniProtKB/TrEMBL:A1K9Y8,NCBI_GP:CAL95643.1;Name=CAL95643.1;Note=Conserved hypothetical secreted protein. Homology to RS04458 of Ralstonia solanacearum of 31%25 (tremble:Q8Y292). No domains predicted .Signal peptide reported. NO TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95643.1;transl_table=11
AM406670.1	EMBL	gene	3329491	3330198	.	+	.	ID=gene3078;Name=azo3028;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3028
AM406670.1	EMBL	CDS	3329491	3330198	.	+	0	ID=cds3025;Parent=gene3078;Dbxref=EnsemblGenomes-Gn:azo3028,EnsemblGenomes-Tr:CAL95644,GOA:A1K9Y9,InterPro:IPR005074,UniProtKB/TrEMBL:A1K9Y9,NCBI_GP:CAL95644.1;Name=CAL95644.1;Note=Conserved hypothetical peptidase. Homology to rsc0445 of R. solanacearum of 50%25 (trembl|Q8Y291). Pfam: Peptidas_C39. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites%2C suggesting that a different processing enzyme is involved. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical peptidase;protein_id=CAL95644.1;transl_table=11
AM406670.1	EMBL	gene	3330212	3331177	.	+	.	ID=gene3079;Name=azo3029;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3029
AM406670.1	EMBL	CDS	3330212	3331177	.	+	0	ID=cds3026;Parent=gene3079;Dbxref=EnsemblGenomes-Gn:azo3029,EnsemblGenomes-Tr:CAL95645,UniProtKB/TrEMBL:A1K9Z0,NCBI_GP:CAL95645.1;Name=CAL95645.1;Note=Hypothetical secreted protein. No good homology over the entire length in DB. No domains predicted. Signal Peptide present. No TMH present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95645.1;transl_table=11
AM406670.1	EMBL	gene	3331211	3332539	.	-	.	ID=gene3080;Name=azo3030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3030
AM406670.1	EMBL	CDS	3331211	3332539	.	-	0	ID=cds3027;Parent=gene3080;Dbxref=EnsemblGenomes-Gn:azo3030,EnsemblGenomes-Tr:CAL95646,UniProtKB/TrEMBL:A1K9Z1,NCBI_GP:CAL95646.1;Name=CAL95646.1;Note=Conserved hypothetical secreted protein. Homology to RS04455 of R.solanacearum of 50%25 (tremble:Q8Y289). No domains predicted. Signal P reporting signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95646.1;transl_table=11
AM406670.1	EMBL	gene	3332594	3333922	.	-	.	ID=gene3081;Name=azo3031;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3031
AM406670.1	EMBL	CDS	3332594	3333922	.	-	0	ID=cds3028;Parent=gene3081;Dbxref=EnsemblGenomes-Gn:azo3031,EnsemblGenomes-Tr:CAL95647,GOA:A1K9Z2,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1K9Z2,NCBI_GP:CAL95647.1;Name=CAL95647.1;Note=Probable transcriptional regulatory protein%2C%3B~Specificity unclear;gbkey=CDS;product=probable transcriptional regulatory protein;protein_id=CAL95647.1;transl_table=11
AM406670.1	EMBL	gene	3334477	3334860	.	+	.	ID=gene3082;Name=azo3032;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3032
AM406670.1	EMBL	CDS	3334477	3334860	.	+	0	ID=cds3029;Parent=gene3082;Dbxref=EnsemblGenomes-Gn:azo3032,EnsemblGenomes-Tr:CAL95648,UniProtKB/TrEMBL:A1K9Z3,NCBI_GP:CAL95648.1;Name=CAL95648.1;Note=Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. TMH in signal peptide.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95648.1;transl_table=11
AM406670.1	EMBL	gene	3334857	3334991	.	+	.	ID=gene3083;Name=azo3033;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3033
AM406670.1	EMBL	CDS	3334857	3334991	.	+	0	ID=cds3030;Parent=gene3083;Dbxref=EnsemblGenomes-Gn:azo3033,EnsemblGenomes-Tr:CAL95649,UniProtKB/TrEMBL:A1K9Z4,NCBI_GP:CAL95649.1;Name=CAL95649.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95649.1;transl_table=11
AM406670.1	EMBL	gene	3335002	3335409	.	+	.	ID=gene3084;Name=azo3034;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3034
AM406670.1	EMBL	CDS	3335002	3335409	.	+	0	ID=cds3031;Parent=gene3084;Dbxref=EnsemblGenomes-Gn:azo3034,EnsemblGenomes-Tr:CAL95650,UniProtKB/TrEMBL:A1K9Z5,NCBI_GP:CAL95650.1;Name=CAL95650.1;Note=Hypothetical membrane protein. no homology to the data bank. no domains predicted. no signal peptide. 3 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95650.1;transl_table=11
AM406670.1	EMBL	gene	3335418	3336713	.	+	.	ID=gene3085;Name=azo3035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3035
AM406670.1	EMBL	CDS	3335418	3336713	.	+	0	ID=cds3032;Parent=gene3085;Dbxref=EnsemblGenomes-Gn:azo3035,EnsemblGenomes-Tr:CAL95651,UniProtKB/TrEMBL:A1K9Z6,NCBI_GP:CAL95651.1;Name=CAL95651.1;Note=Hypothetical membrane protein. no homology to the data bank. no domains predicted. signal peptide. 2 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95651.1;transl_table=11
AM406670.1	EMBL	gene	3336852	3337970	.	-	.	ID=gene3086;Name=azo3036;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3036
AM406670.1	EMBL	CDS	3336852	3337970	.	-	0	ID=cds3033;Parent=gene3086;Dbxref=EnsemblGenomes-Gn:azo3036,EnsemblGenomes-Tr:CAL95652,UniProtKB/TrEMBL:A1K9Z7,NCBI_GP:CAL95652.1;Name=CAL95652.1;Note=Conserved hypothetical protein. Homology to Rgel02002356 of Rubrivivax gelatinosus of 47%25 (gi|47573226|ref|ZP_00243265.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95652.1;transl_table=11
AM406670.1	EMBL	gene	3337939	3338643	.	-	.	ID=gene3087;Name=azo3037;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3037
AM406670.1	EMBL	CDS	3337939	3338643	.	-	0	ID=cds3034;Parent=gene3087;Dbxref=EnsemblGenomes-Gn:azo3037,EnsemblGenomes-Tr:CAL95653,UniProtKB/TrEMBL:A1K9Z8,NCBI_GP:CAL95653.1;Name=CAL95653.1;Note=conserved hypothetical protein. Homology to Rgel02002355 of Rubrivivax gelatinosus of 41%25 (gi|47573225|ref|ZP_00243264.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95653.1;transl_table=11
AM406670.1	EMBL	gene	3339274	3342159	.	-	.	ID=gene3088;Name=fdhA1;gbkey=Gene;gene=fdhA1;gene_biotype=protein_coding;locus_tag=azo3038
AM406670.1	EMBL	CDS	3339274	3342159	.	-	0	ID=cds3035;Parent=gene3088;Dbxref=EnsemblGenomes-Gn:azo3038,EnsemblGenomes-Tr:CAL95654,GOA:A1K9Z9,InterPro:IPR000283,InterPro:IPR001041,InterPro:IPR006478,InterPro:IPR006655,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,InterPro:IPR012675,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1K9Z9,NCBI_GP:CAL95654.1;Name=CAL95654.1;Note=Probable formate dehydrogenase (NADP+)%2C alpha subunit. Homology to fdh1A of M. extorquens of 60%25 (trembl|Q8KTI7). InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655)%3B Respiratory-chain NADH dehydrogenase 75 kD subunit (IPR000283)%3B Ferredoxin (IPR001041)%3B 4Fe-4S ferredoxin%2C iron-sulfur binding domain (IPR001450) Pfam: 2Fe-2S iron-sulfur cluster binding domain%3B 4Fe-2S binding doami%3B Molybdopterin oxidase%3B Molybdopterin dinucloetide binding no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fdhA1;product=probable formate dehydrogenase%2C alpha subunit;protein_id=CAL95654.1;transl_table=11
AM406670.1	EMBL	gene	3342156	3343871	.	-	.	ID=gene3089;Name=fdh1B;gbkey=Gene;gene=fdh1B;gene_biotype=protein_coding;locus_tag=azo3039
AM406670.1	EMBL	CDS	3342156	3343871	.	-	0	ID=cds3036;Parent=gene3089;Dbxref=EnsemblGenomes-Gn:azo3039,EnsemblGenomes-Tr:CAL95655,GOA:A1KA00,InterPro:IPR001949,InterPro:IPR011538,InterPro:IPR012336,InterPro:IPR019554,InterPro:IPR019575,UniProtKB/TrEMBL:A1KA00,NCBI_GP:CAL95655.1;Name=CAL95655.1;Note=Probable formate dehydrogenase (NADP+)%2C beta subunit Homology to fdh1B of M. extorpuens of 55%25 (trembl|Q8KTI8) Pfam: Respiratory-chain NADH dehydrogenase 24 kD subunit%3B Respiratory-chain NADH dehydrogenase 51 kD subunit. no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fdh1B;product=probable formate dehydrogenase (NADP+)%2C beta subunit;protein_id=CAL95655.1;transl_table=11
AM406670.1	EMBL	gene	3344244	3345770	.	-	.	ID=gene3090;Name=paaH2;gbkey=Gene;gene=paaH2;gene_biotype=protein_coding;locus_tag=azo3040
AM406670.1	EMBL	CDS	3344244	3345770	.	-	0	ID=cds3037;Parent=gene3090;Dbxref=EnsemblGenomes-Gn:azo3040,EnsemblGenomes-Tr:CAL95656,GOA:A1KA01,InterPro:IPR006108,InterPro:IPR006176,InterPro:IPR008927,InterPro:IPR011967,InterPro:IPR013328,InterPro:IPR016040,UniProtKB/TrEMBL:A1KA01,NCBI_GP:CAL95656.1;Name=CAL95656.1;Note=Probable 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) (Beta- hydroxybutyryl-CoA dehydrogenase) (BHBD). Activity:- 3-acetoacetyl-CoA + NADPH %3D (S)-3-hydroxybutanoyl-CoA + NADP+ Entry name TREMBL:Q9F9V1 InterPro IPR006108%3B 3HCDH_C. IPR006176%3B 3HCDH_N. IPR008927%3B 6DGDH_C_like. IPR002110%3B ANK. IPR000205%3B NAD_BS. Pfam PF00725%3B 3HCDH%3B 2. PF02737%3B 3HCDH_N%3B 1. Identities %3D 319/502 (63%25) Prediction: Signal peptide Signal peptide probability: 0.906 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=paaH2;product=probable 3-hydroxybutyryl-CoA dehydrogenase;protein_id=CAL95656.1;transl_table=11
AM406670.1	EMBL	gene	3345835	3346002	.	-	.	ID=gene3091;Name=rubA;gbkey=Gene;gene=rubA;gene_biotype=protein_coding;locus_tag=azo3041
AM406670.1	EMBL	CDS	3345835	3346002	.	-	0	ID=cds3038;Parent=gene3091;Dbxref=EnsemblGenomes-Gn:azo3041,EnsemblGenomes-Tr:CAL95657,GOA:A1KA02,InterPro:IPR004039,InterPro:IPR024934,InterPro:IPR024935,UniProtKB/TrEMBL:A1KA02,NCBI_GP:CAL95657.1;Name=CAL95657.1;Note=Probable rubredoxin. Homology to ruba of A. calcoaceticus of 42%25 (sprot|RUBR_ACIAD). Involved in the hydrocarbon hydroxylating system to convert dodecane to lauric acid%2C which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase. Pfam: Rubredoxin no singal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=rubA;product=probable rubredoxin;protein_id=CAL95657.1;transl_table=11
AM406670.1	EMBL	gene	3346059	3347039	.	-	.	ID=gene3092;Name=azo3042;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3042
AM406670.1	EMBL	CDS	3346059	3347039	.	-	0	ID=cds3039;Parent=gene3092;Dbxref=EnsemblGenomes-Gn:azo3042,EnsemblGenomes-Tr:CAL95658,GOA:A1KA03,InterPro:IPR002085,InterPro:IPR002364,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR016040,UniProtKB/TrEMBL:A1KA03,NCBI_GP:CAL95658.1;Name=CAL95658.1;Note=ZP_00167050: 52%25 identity%3B 70%25 similarity. Quinone oxidoreductase (EC 1.6.5.5) (NADPH:quinone reductase) (Zeta- crystallin). DOES NOT HAVE ALCOHOL DEHYDROGENASE ACTIVITY. BINDS NADP AND ACTS THROUGH A ONE-ELECTRON TRANSFER PROCESS. ORTHOQUINONES ARE THE BEST SUBSTRATES. MAY ACT IN THE DETOXIFICATION OF XENOBIOTICS (BY SIMILARITY). InterPro: Zinc-containing alcohol dehydrogenase superfamily InterPro:IPR002085%3B Adh_zn_family. Pfam:PF00107%3B ADH_zinc_N TIGRFAM: 2A0302: arginine/ornithine antiporter tdh: L-threonine 3-dehydrogenase%3B~Function unclear;gbkey=CDS;product=NADPH quinone oxidoreductase%2C putative;protein_id=CAL95658.1;transl_table=11
AM406670.1	EMBL	gene	3347056	3347859	.	-	.	ID=gene3093;Name=paaG4;gbkey=Gene;gene=paaG4;gene_biotype=protein_coding;locus_tag=azo3043
AM406670.1	EMBL	CDS	3347056	3347859	.	-	0	ID=cds3040;Parent=gene3093;Dbxref=EnsemblGenomes-Gn:azo3043,EnsemblGenomes-Tr:CAL95660,GOA:A1KA04,InterPro:IPR001753,InterPro:IPR018376,InterPro:IPR029045,UniProtKB/TrEMBL:A1KA04,NCBI_GP:CAL95660.1;Name=CAL95660.1;Note=COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). catalytic activity:-(3s)-3-hydroxyacyl-coa %3D trans-2(or 3)-enoyl- coa + H(2)o. Entry name:- SWISSPROT:PAAG_ECOLI InterPro:-IPR001753%3B EnCoA_hydrtse. Pfam:- PF00378%3B ECH%3B 1. Identities %3D 72/262 (27%25) Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=paaG4;product=putative enoyl-CoA hydratase;protein_id=CAL95660.1;transl_table=11
AM406670.1	EMBL	gene	3347868	3348293	.	-	.	ID=gene3094;Name=ybgC;gbkey=Gene;gene=ybgC;gene_biotype=protein_coding;locus_tag=azo3044
AM406670.1	EMBL	CDS	3347868	3348293	.	-	0	ID=cds3041;Parent=gene3094;Dbxref=EnsemblGenomes-Gn:azo3044,EnsemblGenomes-Tr:CAL95661,GOA:A1KA05,InterPro:IPR006683,InterPro:IPR029069,UniProtKB/TrEMBL:A1KA05,NCBI_GP:CAL95661.1;Name=CAL95661.1;Note=Hypothetical protein HI0386. TREMBL:Q84HI6: 48%25 identity%2C 66%25 similarity 4-hydroxybenzoyl-CoA thioesterase is a protein of 141 amino-acid residues that assemble as an homotetramer. An aspartate in the N-terminal domain is thought to participate in the catalytic mechanism 4-hydroxybenzoyl-CoA + H2 O %3D 4-hydroxybenzoate + CoA IPR006683%3B Thioesterase superfamily IPR006684%3B 4-hydroxybenzoyl-CoA thioesterase Pfam:PF03061%3B 4HBT%3B No transmembrane helices (TMHMM predicted) TIGR00051: conserved hypothetical protein%3B~High confidence in function and specificity;gbkey=CDS;gene=ybgC;product=probable thioesterase;protein_id=CAL95661.1;transl_table=11
AM406670.1	EMBL	gene	3348797	3349570	.	-	.	ID=gene3095;Name=azo3045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3045
AM406670.1	EMBL	CDS	3348797	3349570	.	-	0	ID=cds3042;Parent=gene3095;Dbxref=EnsemblGenomes-Gn:azo3045,EnsemblGenomes-Tr:CAL95662,GOA:A1KA06,InterPro:IPR029058,UniProtKB/TrEMBL:A1KA06,NCBI_GP:CAL95662.1;Name=CAL95662.1;Note=TREMBL:Q84HI5: 83%25 identity%2C 89%25 similarity from Azoarcus evansii (gene name refereed as ORF2) Haloalkane dehalogenase (EC 3.8.1.5). Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds leading to the formation of the corresponding primary alcohols halide ions and protons. Has a broad substrate specificity which includes mono- and di- chlorinated and brominated alkanes. The highest activity was found with 12-dibromoethane whereas low activity was measured with the analog 12-dichloroethane. InterPro: Alpha/beta hydrolase fold Description:lactonase. InterPro:IPR000379%3B Ser_estrs Pfam:abhydrolase_2%2C Thioesterase aroC: chorismate synthase Signal P predicted nonsecretiory protein without transmembrane helices.%3B~High confidence in function and specificity;gbkey=CDS;product=probable lactonase;protein_id=CAL95662.1;transl_table=11
AM406670.1	EMBL	gene	3349583	3350377	.	-	.	ID=gene3096;Name=azo3046;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3046
AM406670.1	EMBL	CDS	3349583	3350377	.	-	0	ID=cds3043;Parent=gene3096;Dbxref=EnsemblGenomes-Gn:azo3046,EnsemblGenomes-Tr:CAL95663,GOA:A1KA07,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KA07,NCBI_GP:CAL95663.1;Name=CAL95663.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q84HI4 (80%25) and to trembl|Q89VH8 (45%25). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop)%3B~Specificity unclear;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL95663.1;transl_table=11
AM406670.1	EMBL	gene	3350370	3351176	.	-	.	ID=gene3097;Name=livG1;gbkey=Gene;gene=livG1;gene_biotype=protein_coding;locus_tag=azo3047
AM406670.1	EMBL	CDS	3350370	3351176	.	-	0	ID=cds3044;Parent=gene3097;Dbxref=EnsemblGenomes-Gn:azo3047,EnsemblGenomes-Tr:CAL95664,GOA:A1KA08,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1KA08,NCBI_GP:CAL95664.1;Name=CAL95664.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q84HI3 (79%25) and to sprot|LIVG_ECOLI (37%25). Pfam (PF00005): ABC transporter ProSite (PS50101): ATP/GTP-binding site motif A (P-loop) Smart (SM00382): AAA ATPase superfamily%3B~Specificity unclear;gbkey=CDS;gene=livG1;product=ABC transporter ATP-binding protein;protein_id=CAL95664.1;transl_table=11
AM406670.1	EMBL	gene	3351169	3352149	.	-	.	ID=gene3098;Name=livM3;gbkey=Gene;gene=livM3;gene_biotype=protein_coding;locus_tag=azo3048
AM406670.1	EMBL	CDS	3351169	3352149	.	-	0	ID=cds3045;Parent=gene3098;Dbxref=EnsemblGenomes-Gn:azo3048,EnsemblGenomes-Tr:CAL95665,GOA:A1KA09,InterPro:IPR001851,UniProtKB/TrEMBL:A1KA09,NCBI_GP:CAL95665.1;Name=CAL95665.1;Note=Putative branched-chain amino acid transport permease. Homology to livM of E. coli of 31%25 as well as genes coding for a new pathway of aerobic benzoate meabolisme in A. evansii (77%25). Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. Pfam: Branched-chain amino acid transport system. probable signal peptide probable 8 TMHs%3B~Specificity unclear;gbkey=CDS;gene=livM3;product=putative branched-chain amino acid transport permease;protein_id=CAL95665.1;transl_table=11
AM406670.1	EMBL	gene	3352156	3353022	.	-	.	ID=gene3099;Name=azo3049;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3049
AM406670.1	EMBL	CDS	3352156	3353022	.	-	0	ID=cds3046;Parent=gene3099;Dbxref=EnsemblGenomes-Gn:azo3049,EnsemblGenomes-Tr:CAL95666,GOA:A1KA10,InterPro:IPR001851,UniProtKB/TrEMBL:A1KA10,NCBI_GP:CAL95666.1;Name=CAL95666.1;Note=Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q84HI2 (91%25)%2C to trembl|Q89VI1 (47%25)%2C to sprot|LIVH_ECOLI (27%25) and to sprot|BRAD_PSEAE (30%25). Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) TMHMM reporting six Tmhelix.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease protein;protein_id=CAL95666.1;transl_table=11
AM406670.1	EMBL	gene	3353237	3354418	.	-	.	ID=gene3100;Name=livJ;gbkey=Gene;gene=livJ;gene_biotype=protein_coding;locus_tag=azo3050
AM406670.1	EMBL	CDS	3353237	3354418	.	-	0	ID=cds3047;Parent=gene3100;Dbxref=EnsemblGenomes-Gn:azo3050,EnsemblGenomes-Tr:CAL95667,GOA:A1KA11,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1KA11,NCBI_GP:CAL95667.1;Name=CAL95667.1;Note=In enteric bacteria such E. coli and Salmonella typhimurium%2C periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar trembl|Q93FB9 (84%25) and to sprot|LIVJ_ECOLI (21%25). Pfam (PF01094): Receptor family ligand binding region Pfam (PF04392): Protein of unknown function (DUF534) SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=livJ;product=putative leucine-specific binding protein;protein_id=CAL95667.1;transl_table=11
AM406670.1	EMBL	gene	3354486	3354983	.	-	.	ID=gene3101;Name=azo3051;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3051
AM406670.1	EMBL	CDS	3354486	3354983	.	-	0	ID=cds3048;Parent=gene3101;Dbxref=EnsemblGenomes-Gn:azo3051,EnsemblGenomes-Tr:CAL95668,InterPro:IPR012312,UniProtKB/TrEMBL:A1KA12,NCBI_GP:CAL95668.1;Name=CAL95668.1;Note=Conserved hypothetical protein. Homology Daro03002253 of Dechloromonas aromatica of 43%25 (gi|53730397|ref|ZP_00151095.2|(NBCI ENTREZ)). Pfam: Hemerythrin HHE cation binding domain. Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance%2C in Nereis diversicolor MP2_NERDI binds Cadmium so as to protect the organism from toxicity. However Hemerythrin is classically described as Oxygen-binding through two attached Fe2+ ions. And the bacterial Q7WX96_ALCEU is a regulator of response to NO%2C which suggests yet another set-up for its metal ligands. In Staphylococcus aureus P72360 has been noted to be important when the organism switches to living in environments with low oxygen concentrations%3B perhaps this protein acts as an oxygen store or scavenger. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95668.1;transl_table=11
AM406670.1	EMBL	gene	3354997	3356595	.	-	.	ID=gene3102;Name=bzdA;gbkey=Gene;gene=bzdA;gene_biotype=protein_coding;locus_tag=azo3052
AM406670.1	EMBL	CDS	3354997	3356595	.	-	0	ID=cds3049;Parent=gene3102;Dbxref=EnsemblGenomes-Gn:azo3052,EnsemblGenomes-Tr:CAL95669,GOA:A1KA13,InterPro:IPR000873,InterPro:IPR011957,InterPro:IPR025110,UniProtKB/TrEMBL:A1KA13,NCBI_GP:CAL95669.1;Name=CAL95669.1;Note=Entry name :- TREMBL:Q84HI0 Entry name :-TREMBL:Q8VUF1 InterPro IPR010071%3B AA_adenyl_dom. IPR000873%3B AMP-bind. IPR010192%3B MenE. Pfam PF00501%3B AMP-binding%3B 1 Identities %3D 414/532 (77%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=bzdA;product=probable benzoate-coa ligase.;protein_id=CAL95669.1;transl_table=11
AM406670.1	EMBL	gene	3356689	3357153	.	-	.	ID=gene3103;Name=azo3053;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3053
AM406670.1	EMBL	CDS	3356689	3357153	.	-	0	ID=cds3050;Parent=gene3103;Dbxref=EnsemblGenomes-Gn:azo3053,EnsemblGenomes-Tr:CAL95670,UniProtKB/TrEMBL:A1KA14,NCBI_GP:CAL95670.1;Name=CAL95670.1;Note=Conserved hypothetical protein. Homology to an orf of A. evnasii of 79%25 (trembl|Q84HH9). no domains predicted. no signal peptide. no TMHS;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95670.1;transl_table=11
AM406670.1	EMBL	gene	3357353	3358930	.	-	.	ID=gene3104;Name=azo3054;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3054
AM406670.1	EMBL	CDS	3357353	3358930	.	-	0	ID=cds3051;Parent=gene3104;Dbxref=EnsemblGenomes-Gn:azo3054,EnsemblGenomes-Tr:CAL95671,GOA:A1KA15,InterPro:IPR011966,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,UniProtKB/TrEMBL:A1KA15,NCBI_GP:CAL95671.1;Name=CAL95671.1;Note=Aldehyde dehydrogenase (NAD+). Homology to the aldehyce dehydrogenase of the of the benzoate gene cluster of A. evansii of 81%25 (trembl|Q84HH8). Aldehyde dehydrogenases are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. Here clustered with genes involved in the aerobic benzoate metabolism. InterPro: Aldehyde dehydrogenase family (IPR002086) Pfam: Aldehyde dehydrogenase family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;product=aldehyde dehydrogenase (NAD+);protein_id=CAL95671.1;transl_table=11
AM406670.1	EMBL	gene	3359261	3360175	.	+	.	ID=gene3105;Name=azo3055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3055
AM406670.1	EMBL	CDS	3359261	3360175	.	+	0	ID=cds3052;Parent=gene3105;Dbxref=EnsemblGenomes-Gn:azo3055,EnsemblGenomes-Tr:CAL95672,GOA:A1KA16,InterPro:IPR000623,InterPro:IPR001387,InterPro:IPR010982,InterPro:IPR023000,InterPro:IPR027417,UniProtKB/TrEMBL:A1KA16,NCBI_GP:CAL95672.1;Name=CAL95672.1;Note=Conserved hypothetical protein. Homology to a orf of T. aromatica of 82%25 (trembl|Q8GQN8). Fusion protein containing a domain Helix-turm-helix (IPR001387). Pfam: Shikimate kinase%3B Helix-turm-helix. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95672.1;transl_table=11
AM406670.1	EMBL	gene	3360200	3361864	.	+	.	ID=gene3106;Name=azo3056;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3056
AM406670.1	EMBL	CDS	3360200	3361864	.	+	0	ID=cds3053;Parent=gene3106;Dbxref=EnsemblGenomes-Gn:azo3056,EnsemblGenomes-Tr:CAL95673,GOA:A1KA17,InterPro:IPR001753,InterPro:IPR017633,InterPro:IPR029045,UniProtKB/TrEMBL:A1KA17,NCBI_GP:CAL95673.1;Name=CAL95673.1;Note=Activity:- (3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H2O Entry name :- TREMBL:Q84HH6 InterPro :-IPR001753%3B EnCoA_hydrtse. Pfam:- PF00378%3B ECH%3B 1. Number of predicted TMHs: 0 Identities %3D 452/553 (81%25)%3B~Family membership;gbkey=CDS;product=probable enoyl-coa-hydratase/isomerase.;protein_id=CAL95673.1;transl_table=11
AM406670.1	EMBL	gene	3362066	3363490	.	+	.	ID=gene3107;Name=boxB;gbkey=Gene;gene=boxB;gene_biotype=protein_coding;locus_tag=azo3057
AM406670.1	EMBL	CDS	3362066	3363490	.	+	0	ID=cds3054;Parent=gene3107;Dbxref=EnsemblGenomes-Gn:azo3057,EnsemblGenomes-Tr:CAL95674,InterPro:IPR007814,InterPro:IPR009078,InterPro:IPR012347,InterPro:IPR017635,UniProtKB/TrEMBL:A1KA18,NCBI_GP:CAL95674.1;Name=CAL95674.1;Note=Benzoyl-CoA oxygenase component B. 85%25%3B~Function unclear;gbkey=CDS;gene=boxB;product=Benzoyl-CoA oxygenase component B;protein_id=CAL95674.1;transl_table=11
AM406670.1	EMBL	gene	3363690	3364940	.	+	.	ID=gene3108;Name=boxA;gbkey=Gene;gene=boxA;gene_biotype=protein_coding;locus_tag=azo3058
AM406670.1	EMBL	CDS	3363690	3364940	.	+	0	ID=cds3055;Parent=gene3108;Dbxref=EnsemblGenomes-Gn:azo3058,EnsemblGenomes-Tr:CAL95675,GOA:A1KA19,InterPro:IPR001433,InterPro:IPR001450,InterPro:IPR001709,InterPro:IPR008333,InterPro:IPR015701,InterPro:IPR017634,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1KA19,NCBI_GP:CAL95675.1;Name=CAL95675.1;Note=Benzoyl-CoA oxygenase component A. 84%25 4Fe4S_ferredoxin. IPR001709%3B FPN_cyt_redctse. IPR001433%3B Oxred_FAD/NAD(P). Pfam:PF00037%3B Fer4%3B 2. PF00175%3B NAD_binding_1%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=boxA;product=putative Benzoyl-CoA oxygenase component A;protein_id=CAL95675.1;transl_table=11
AM406670.1	EMBL	gene	3365275	3366483	.	+	.	ID=gene3109;Name=azo3059;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3059
AM406670.1	EMBL	CDS	3365275	3366483	.	+	0	ID=cds3056;Parent=gene3109;Dbxref=EnsemblGenomes-Gn:azo3059,EnsemblGenomes-Tr:CAL95676,GOA:A1KA20,InterPro:IPR002155,InterPro:IPR012793,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR020610,InterPro:IPR020613,InterPro:IPR020615,InterPro:IPR020616,InterPro:IPR020617,UniProtKB/TrEMBL:A1KA20,NCBI_GP:CAL95676.1;Name=CAL95676.1;Note=Entry name TREMBL:Q84HH5 InterPro IPR002155%3B Thiolase. Pfam PF02803%3B Thiolase_C%3B 1. PF00108%3B Thiolase_N%3B 1. Identities %3D 309/402 (76%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;product=probable 3-ketoadipyl-coa thiolase.;protein_id=CAL95676.1;transl_table=11
AM406670.1	EMBL	gene	3366498	3367259	.	+	.	ID=gene3110;Name=azo3060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3060
AM406670.1	EMBL	CDS	3366498	3367259	.	+	0	ID=cds3057;Parent=gene3110;Dbxref=EnsemblGenomes-Gn:azo3060,EnsemblGenomes-Tr:CAL95677,InterPro:IPR012312,UniProtKB/TrEMBL:A1KA21,NCBI_GP:CAL95677.1;Name=CAL95677.1;Note=Conserved hypothetical protein. Homology to ebA2769 of Azoarcus sp. EbN1 of 56%25 (gnl|keqq|eba:ebA2769(KEGG)). Pfam: Hemerythrin HHE cation binding domain. Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance%2C in Nereis diversicolor MP2_NERDI binds Cadmium so as to protect the organism from toxicity. However Hemerythrin is classically described as Oxygen-binding through two attached Fe2+ ions. And the bacterial Q7WX96_ALCEU is a regulator of response to NO%2C which suggests yet another set-up for its metal ligands. In Staphylococcus aureus P72360 has been noted to be important when the organism switches to living in environments with low oxygen concentrations%3B perhaps this protein acts as an oxygen store or scavenger. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95677.1;transl_table=11
AM406670.1	EMBL	gene	3367800	3370820	.	-	.	ID=gene3111;Name=azo3061;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3061
AM406670.1	EMBL	CDS	3367800	3370820	.	-	0	ID=cds3058;Parent=gene3111;Dbxref=EnsemblGenomes-Gn:azo3061,EnsemblGenomes-Tr:CAL95678,GOA:A1KA22,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR003018,InterPro:IPR013656,InterPro:IPR013767,InterPro:IPR029016,InterPro:IPR029787,UniProtKB/TrEMBL:A1KA22,NCBI_GP:CAL95678.1;Name=CAL95678.1;Note=GGDEF/EAL/PAS/PAC/GAF-domain containing protein;gbkey=CDS;product=GGDEF/EAL/PAS/PAC/GAF-domain containing protein;protein_id=CAL95678.1;transl_table=11
AM406670.1	EMBL	gene	3371066	3372010	.	-	.	ID=gene3112;Name=brkB;gbkey=Gene;gene=brkB;gene_biotype=protein_coding;locus_tag=azo3062
AM406670.1	EMBL	CDS	3371066	3372010	.	-	0	ID=cds3059;Parent=gene3112;Dbxref=EnsemblGenomes-Gn:azo3062,EnsemblGenomes-Tr:CAL95679,GOA:A1KA23,InterPro:IPR017039,UniProtKB/TrEMBL:A1KA23,NCBI_GP:CAL95679.1;Name=CAL95679.1;Note=Putative Ribonuclease RNASE_BN Protein%2C 28%25 identity to TrEMBL%3BQ8XPH6. Has PF03631%2C Ribonuclease BN-like family%3BIPR004664%2C RNase_BN: This family contains integral membrane proteins with 5 to 6 predicted transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation P32146. This family of proteins does not seem to contain any completely conserved polar residues that would be expected in a nuclease enzyme%2C suggesting that many members of this family may not have this catalytic activity.%3B~Conserved hypothetical protein;gbkey=CDS;gene=brkB;product=exoribonuclease II;protein_id=CAL95679.1;transl_table=11
AM406670.1	EMBL	gene	3372179	3373117	.	-	.	ID=gene3113;Name=azo3063;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3063
AM406670.1	EMBL	CDS	3372179	3373117	.	-	0	ID=cds3060;Parent=gene3113;Dbxref=EnsemblGenomes-Gn:azo3063,EnsemblGenomes-Tr:CAL95680,GOA:A1KA24,InterPro:IPR000620,UniProtKB/TrEMBL:A1KA24,NCBI_GP:CAL95680.1;Name=CAL95680.1;Note=Conserved hypothetical membrane protein. Homology to CV2531 of C. violaceum of 37%25. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Tranporter. Pfam: Integral membrane protein DUF6. probable 10 TMHs. probable signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95680.1;transl_table=11
AM406670.1	EMBL	gene	3373359	3373826	.	+	.	ID=gene3114;Name=lrp1;gbkey=Gene;gene=lrp1;gene_biotype=protein_coding;locus_tag=azo3064
AM406670.1	EMBL	CDS	3373359	3373826	.	+	0	ID=cds3061;Parent=gene3114;Dbxref=EnsemblGenomes-Gn:azo3064,EnsemblGenomes-Tr:CAL95681,GOA:A1KA25,InterPro:IPR000485,InterPro:IPR011008,InterPro:IPR011991,InterPro:IPR019887,InterPro:IPR019888,UniProtKB/TrEMBL:A1KA25,NCBI_GP:CAL95681.1;Name=CAL95681.1;Note=Leucine-responsive regulatory protein. Mediates a global response to leucine. Exogenous leucine affects the expression of a number of different opreons%3B Lrp mediates this effect for at least some of these operons. For example it is regulator of the branched-chain amino acid transport genes. Similar to SWISSPROT: sprot|LRP_ECOLI (40%25 Escherichia coli%2C leucine-responsive regulatory protein Lrp) InterPro: IPR000485 HTH_AsnC_lrp. Pfam: PF01037 AsnC family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=lrp1;product=leucine-responsive regulatory protein;protein_id=CAL95681.1;transl_table=11
AM406670.1	EMBL	gene	3374096	3375016	.	-	.	ID=gene3115;Name=mvaB;gbkey=Gene;gene=mvaB;gene_biotype=protein_coding;locus_tag=azo3065
AM406670.1	EMBL	CDS	3374096	3375016	.	-	0	ID=cds3062;Parent=gene3115;Dbxref=EnsemblGenomes-Gn:azo3065,EnsemblGenomes-Tr:CAL95682,GOA:A1KA26,InterPro:IPR000891,InterPro:IPR013785,InterPro:IPR027167,UniProtKB/TrEMBL:A1KA26,NCBI_GP:CAL95682.1;Name=CAL95682.1;Note=Hydroxymethylglutaryl-CoA lyase%2C MvaB. It catalyses the conversion of (S)-3-hydroxy-3-methylglutaryl-CoA to acetyl-CoA and acetoacetate during the final step of ketogenesis and leucine catabolism. Similar to trembl|Q8QGJ4 (60%25) and to pir|H83394 (56%25). InterPro (PF00682): HMG-CoA Lyase-like family%3B~High confidence in function and specificity;gbkey=CDS;gene=mvaB;product=hydroxymethylglutaryl-CoA lyase;protein_id=CAL95682.1;transl_table=11
AM406670.1	EMBL	gene	3375027	3376715	.	-	.	ID=gene3116;Name=fadD3;gbkey=Gene;gene=fadD3;gene_biotype=protein_coding;locus_tag=azo3066
AM406670.1	EMBL	CDS	3375027	3376715	.	-	0	ID=cds3063;Parent=gene3116;Dbxref=EnsemblGenomes-Gn:azo3066,EnsemblGenomes-Tr:CAL95683,GOA:A1KA27,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:A1KA27,NCBI_GP:CAL95683.1;Name=CAL95683.1;Note=Esterification%2C concomitant with transport%2C of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids%2C TREMBL:Q9F9U4 (61%25 identity)%3B TREMBL:Q7NX49 (69%25 identity). Pfam (PF00501): AMP-binding enzyme.%3B~High confidence in function and specificity;gbkey=CDS;gene=fadD3;product=Long-chain fatty-acid-CoA ligase;protein_id=CAL95683.1;transl_table=11
AM406670.1	EMBL	gene	3376848	3377219	.	-	.	ID=gene3117;Name=ycjD;gbkey=Gene;gene=ycjD;gene_biotype=protein_coding;locus_tag=azo3067
AM406670.1	EMBL	CDS	3376848	3377219	.	-	0	ID=cds3064;Parent=gene3117;Dbxref=EnsemblGenomes-Gn:azo3067,EnsemblGenomes-Tr:CAL95684,InterPro:IPR007569,InterPro:IPR011335,UniProtKB/TrEMBL:A1KA28,NCBI_GP:CAL95684.1;Name=CAL95684.1;Note=Hypothetical protein ycjD%2C50%25 identity(65%25 similarity) to SwissProt%3BP45736. Has PF04480%2C Protein of unknown function (DUF559)%3BIPR007569%3B No SIgnal Peptide or TMH present. vsr: DNA mismatch endonuclease (vsr);gbkey=CDS;gene=ycjD;product=conserved hypothetical protein;protein_id=CAL95684.1;transl_table=11
AM406670.1	EMBL	gene	3377487	3379487	.	-	.	ID=gene3118;Name=accC2;gbkey=Gene;gene=accC2;gene_biotype=protein_coding;locus_tag=azo3068
AM406670.1	EMBL	CDS	3377487	3379487	.	-	0	ID=cds3065;Parent=gene3118;Dbxref=EnsemblGenomes-Gn:azo3068,EnsemblGenomes-Tr:CAL95685,GOA:A1KA29,InterPro:IPR000089,InterPro:IPR005479,InterPro:IPR005481,InterPro:IPR005482,InterPro:IPR011053,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR011764,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,UniProtKB/TrEMBL:A1KA29,NCBI_GP:CAL95685.1;Name=CAL95685.1;Note=This protein is a component of the acetyl coenzyme a carboxylase complex%3B first%2C biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coa. Entry name TREMBL:Q8PDU1 InterPro IPR001882%3B Biotin_BS. IPR005482%3B Biotin_carb_C. IPR000089%3B Biotin_lipoyl. IPR005479%3B CPase_L_D2. IPR005481%3B CPase_L_N. Pfam PF02785%3B Biotin_carb_C%3B 1. PF00364%3B Biotin_lipoyl%3B 1. PF00289%3B CPSase_L_chain%3B 1. PF02786%3B CPSase_L_D2%3B 1. Identities %3D 382/661 (57%25) Preediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=accC2;product=probable biotin carboxylase subunit of acetyl-CoA carboxylase;protein_id=CAL95685.1;transl_table=11
AM406670.1	EMBL	gene	3379877	3380665	.	-	.	ID=gene3119;Name=paaG5;gbkey=Gene;gene=paaG5;gene_biotype=protein_coding;locus_tag=azo3069
AM406670.1	EMBL	CDS	3379877	3380665	.	-	0	ID=cds3066;Parent=gene3119;Dbxref=EnsemblGenomes-Gn:azo3069,EnsemblGenomes-Tr:CAL95686,GOA:A1KA30,InterPro:IPR001753,InterPro:IPR014748,InterPro:IPR018376,InterPro:IPR029045,UniProtKB/TrEMBL:A1KA30,NCBI_GP:CAL95686.1;Name=CAL95686.1;Note=Probable enoyl-CoA hydratase :- COULD POSSIBLY OXIDIZES FATTY ACIDS USING SPECIFIC COMPONENTS (BY SIMILARITY). Entry name :- SWISSPROT:PAAG_ECOLI InterPro :-IPR001753%3B EnCoA_hydrtse. Pfam:- PF00378%3B ECH%3B 1. Identities %3D 75/247 (30%25) Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=paaG5;product=probable enoyl-CoA hydratase/isomerase;protein_id=CAL95686.1;transl_table=11
AM406670.1	EMBL	gene	3380677	3382284	.	-	.	ID=gene3120;Name=azo3070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3070
AM406670.1	EMBL	CDS	3380677	3382284	.	-	0	ID=cds3067;Parent=gene3120;Dbxref=EnsemblGenomes-Gn:azo3070,EnsemblGenomes-Tr:CAL95687,GOA:A1KA31,InterPro:IPR000022,InterPro:IPR011762,InterPro:IPR011763,InterPro:IPR029045,UniProtKB/TrEMBL:A1KA31,NCBI_GP:CAL95687.1;Name=CAL95687.1;Note=Activity:- ATP + 3-methylcrotonoyl-CoA + HCO3- %3D ADP + phosphate + 3-methylglutaconyl-CoA Entry name:-TREMBL:Q7WDP0 InterPro:- IPR000022%3B Carboxyl_trans. Pfam:-PF01039%3B Carboxyl_trans%3B 1. Identities %3D 413/535 (77%25) Number of predicted TMHs: 0 Prediction: Non-secretory protein Signal peptide probability: 0.098%3B~Family membership;gbkey=CDS;product=probable carboxyltransferase subunit of acetyl-CoA carboxylase;protein_id=CAL95687.1;transl_table=11
AM406670.1	EMBL	gene	3382372	3382614	.	-	.	ID=gene3121;Name=azo3071;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3071
AM406670.1	EMBL	CDS	3382372	3382614	.	-	0	ID=cds3068;Parent=gene3121;Dbxref=EnsemblGenomes-Gn:azo3071,EnsemblGenomes-Tr:CAL95688,UniProtKB/TrEMBL:A1KA32,NCBI_GP:CAL95688.1;Name=CAL95688.1;Note=Region start changed from 3382650 to 3382614 (-36 bases)%2C %2C Changed start codon from att to next gtg;gbkey=CDS;inference=nucleotide motif:Gismo;product=hypothetical protein;protein_id=CAL95688.1;transl_table=11
AM406670.1	EMBL	gene	3382666	3383205	.	-	.	ID=gene3122;Name=azo3072;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3072
AM406670.1	EMBL	CDS	3382666	3383205	.	-	0	ID=cds3069;Parent=gene3122;Dbxref=EnsemblGenomes-Gn:azo3072,EnsemblGenomes-Tr:CAL95689,UniProtKB/TrEMBL:A1KA33,NCBI_GP:CAL95689.1;Name=CAL95689.1;gbkey=CDS;inference=nucleotide motif:Gismo;product=hypothetical protein;protein_id=CAL95689.1;transl_table=11
AM406670.1	EMBL	gene	3383307	3384761	.	-	.	ID=gene3123;Name=azo3073;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3073
AM406670.1	EMBL	CDS	3383307	3384761	.	-	0	ID=cds3070;Parent=gene3123;Dbxref=EnsemblGenomes-Gn:azo3073,EnsemblGenomes-Tr:CAL95690,GOA:A1KA34,InterPro:IPR000719,InterPro:IPR011009,InterPro:IPR017441,UniProtKB/TrEMBL:A1KA34,NCBI_GP:CAL95690.1;Name=CAL95690.1;Note=Hypothetical protein. No homology to the data base. Pfam: Protein tyrosine kinase%2C Protein kinase domain. Interpro: IPR000719 Protein kinase%2C IPR002290 Serine/threonine protein kinase%2C IPR001245 Tyrosine protein kinase%2C IPR011009 Protein kinase-like. No signal peptide. No TMHs;gbkey=CDS;product=hypothetical protein;protein_id=CAL95690.1;transl_table=11
AM406670.1	EMBL	gene	3384762	3385667	.	-	.	ID=gene3124;Name=azo3074;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3074
AM406670.1	EMBL	CDS	3384762	3385667	.	-	0	ID=cds3071;Parent=gene3124;Dbxref=EnsemblGenomes-Gn:azo3074,EnsemblGenomes-Tr:CAL95691,UniProtKB/TrEMBL:A1KA35,NCBI_GP:CAL95691.1;Name=CAL95691.1;gbkey=CDS;inference=nucleotide motif:Gismo;product=hypothetical protein;protein_id=CAL95691.1;transl_table=11
AM406670.1	EMBL	gene	3385767	3386345	.	-	.	ID=gene3125;Name=azo3075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3075
AM406670.1	EMBL	CDS	3385767	3386345	.	-	0	ID=cds3072;Parent=gene3125;Dbxref=EnsemblGenomes-Gn:azo3075,EnsemblGenomes-Tr:CAL95692,UniProtKB/TrEMBL:A1KA36,NCBI_GP:CAL95692.1;Name=CAL95692.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. signal peptide. 3 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95692.1;transl_table=11
AM406670.1	EMBL	gene	3387069	3387359	.	+	.	ID=gene3126;Name=azo3076;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3076
AM406670.1	EMBL	CDS	3387069	3387359	.	+	0	ID=cds3073;Parent=gene3126;Dbxref=EnsemblGenomes-Gn:azo3076,EnsemblGenomes-Tr:CAL95693,GOA:A1KA37,InterPro:IPR002145,InterPro:IPR010985,InterPro:IPR013321,UniProtKB/TrEMBL:A1KA37,NCBI_GP:CAL95693.1;Name=CAL95693.1;Note=Conserved hypothetical protein. Homology to TdenA01001814 of Thiobacillus denitrificans of 40%25 (gi|52006871|ref|ZP_00334250.1|(NBCI ENTREZ)). Has PF01402%2C Ribbon-helix-helix protein%2C copG family%3B IPR002145 HTH_CopG%3B The structure of this protein repressor%2C which is the shortest reported to date and the first isolated from a plasmid%2C has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerisation and not DNA binding as might have been expected. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95693.1;transl_table=11
AM406670.1	EMBL	gene	3387356	3387649	.	+	.	ID=gene3127;Name=azo3077;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3077
AM406670.1	EMBL	CDS	3387356	3387649	.	+	0	ID=cds3074;Parent=gene3127;Dbxref=EnsemblGenomes-Gn:azo3077,EnsemblGenomes-Tr:CAL95694,InterPro:IPR007712,UniProtKB/TrEMBL:A1KA38,NCBI_GP:CAL95694.1;Name=CAL95694.1;Note=Conserved hypothetical protein. Homology to xcc3092 of X. campestris of 51%25 (trembl|Q8P678). Pfam: Plasmid stabilisation system protein. Members of this family are involved in plasmid stabilisation. The exact molecular function of this protein is not known. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95694.1;transl_table=11
AM406670.1	EMBL	gene	3387664	3388353	.	-	.	ID=gene3128;Name=azo3078;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3078
AM406670.1	EMBL	CDS	3387664	3388353	.	-	0	ID=cds3075;Parent=gene3128;Dbxref=EnsemblGenomes-Gn:azo3078,EnsemblGenomes-Tr:CAL95695,GOA:A1KA39,InterPro:IPR001034,InterPro:IPR011991,InterPro:IPR013196,InterPro:IPR026881,UniProtKB/TrEMBL:A1KA39,NCBI_GP:CAL95695.1;Name=CAL95695.1;Note=Putative transcriptional regulator%2C deoR-family;gbkey=CDS;product=putative transcriptional regulator%2C deoR-family;protein_id=CAL95695.1;transl_table=11
AM406670.1	EMBL	gene	3388508	3388876	.	+	.	ID=gene3129;Name=azo3079;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3079
AM406670.1	EMBL	CDS	3388508	3388876	.	+	0	ID=cds3076;Parent=gene3129;Dbxref=EnsemblGenomes-Gn:azo3079,EnsemblGenomes-Tr:CAL95696,InterPro:IPR025870,InterPro:IPR029068,UniProtKB/TrEMBL:A1KA40,NCBI_GP:CAL95696.1;Name=CAL95696.1;Note=Conserved hypothetical protein. Homology to stm0409 of S. typhimurium of 46%25 (tremble:Q7CR38). InterPro: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. Pfam: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95696.1;transl_table=11
AM406670.1	EMBL	gene	3389559	3389756	.	+	.	ID=gene3130;Name=azo3080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3080
AM406670.1	EMBL	CDS	3389559	3389756	.	+	0	ID=cds3077;Parent=gene3130;Dbxref=EnsemblGenomes-Gn:azo3080,EnsemblGenomes-Tr:CAL95697,UniProtKB/TrEMBL:A1KA41,NCBI_GP:CAL95697.1;Name=CAL95697.1;Note=Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95697.1;transl_table=11
AM406670.1	EMBL	gene	3389852	3391024	.	-	.	ID=gene3131;Name=azo3081;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3081
AM406670.1	EMBL	CDS	3389852	3391024	.	-	0	ID=cds3078;Parent=gene3131;Dbxref=EnsemblGenomes-Gn:azo3081,EnsemblGenomes-Tr:CAL95698,GOA:A1KA42,InterPro:IPR006089,InterPro:IPR006091,InterPro:IPR009075,InterPro:IPR009100,InterPro:IPR013786,UniProtKB/TrEMBL:A1KA42,NCBI_GP:CAL95698.1;Name=CAL95698.1;Note=Entry name:- TREMBL:Q89LX4 Identities %3D 310/374 (82%25) InterPro IPR006089%3B Acyl-CoA_dh. IPR006090%3B Acyl-CoA_dh_C. IPR006091%3B Acyl-CoA_dh_M. IPR006092%3B Acyl-CoA_dh_N. IPR009075%3B AcylCoADH_C_like. IPR009100%3B AcylCoA_dehyd_NM. Pfam PF00441%3B Acyl-CoA_dh%3B 1. PF02770%3B Acyl-CoA_dh_M%3B 1. PF02771%3B Acyl-CoA_dh_N%3B~Family membership;gbkey=CDS;product=probable acyl-coa dehydrogenase;protein_id=CAL95698.1;transl_table=11
AM406670.1	EMBL	gene	3391123	3392256	.	+	.	ID=gene3132;Name=oruR2;gbkey=Gene;gene=oruR2;gene_biotype=protein_coding;locus_tag=azo3082
AM406670.1	EMBL	CDS	3391123	3392256	.	+	0	ID=cds3079;Parent=gene3132;Dbxref=EnsemblGenomes-Gn:azo3082,EnsemblGenomes-Tr:CAL95699,GOA:A1KA43,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR020449,UniProtKB/TrEMBL:A1KA43,NCBI_GP:CAL95699.1;Name=CAL95699.1;Note=Putative ornithine utilization regulator%2C%3B~Specificity unclear;gbkey=CDS;gene=oruR2;product=putative ornithine utilization regulator;protein_id=CAL95699.1;transl_table=11
AM406670.1	EMBL	gene	3392619	3393011	.	-	.	ID=gene3133;Name=azo3083;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3083
AM406670.1	EMBL	CDS	3392619	3393011	.	-	0	ID=cds3080;Parent=gene3133;Dbxref=EnsemblGenomes-Gn:azo3083,EnsemblGenomes-Tr:CAL95700,InterPro:IPR007360,UniProtKB/TrEMBL:A1KA44,NCBI_GP:CAL95700.1;Name=CAL95700.1;Note=Conserved hypothetical membrane protein%2C 44%25 identity to TrEMBL%3BQ82UI6. Has PF04247%3BInvasion gene expression up-regulator%2C SirB%3BIPR007360%3BSirB up-regulates Salmonella typhimurium invasion gene transcription. It is%2Chowever%2C not essential for the expression of these genes. Its function is unknown. No signal peptide. 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95700.1;transl_table=11
AM406670.1	EMBL	gene	3393105	3393806	.	+	.	ID=gene3134;Name=flp;gbkey=Gene;gene=flp;gene_biotype=protein_coding;locus_tag=azo3084
AM406670.1	EMBL	CDS	3393105	3393806	.	+	0	ID=cds3081;Parent=gene3134;Dbxref=EnsemblGenomes-Gn:azo3084,EnsemblGenomes-Tr:CAL95701,GOA:A1KA45,InterPro:IPR000595,InterPro:IPR001808,InterPro:IPR011991,InterPro:IPR012318,InterPro:IPR014710,InterPro:IPR018490,UniProtKB/TrEMBL:A1KA45,NCBI_GP:CAL95701.1;Name=CAL95701.1;Note=Putative transcriptional regulator%2C%3B~Family membership;gbkey=CDS;gene=flp;product=putative transcriptional regulator;protein_id=CAL95701.1;transl_table=11
AM406670.1	EMBL	gene	3393825	3395108	.	-	.	ID=gene3135;Name=azo3085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3085
AM406670.1	EMBL	CDS	3393825	3395108	.	-	0	ID=cds3082;Parent=gene3135;Dbxref=EnsemblGenomes-Gn:azo3085,EnsemblGenomes-Tr:CAL95702,UniProtKB/TrEMBL:A1KA46,NCBI_GP:CAL95702.1;Name=CAL95702.1;Note=Conserved hypothetical membrane protein. Homology to CV2709 of Chromobacterium violaceum of 40%25 (trembl|Q7NUI9). Has PF04550%3BPhage holin family 2:Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the buildup of a holin oligomer which causes the lysis. IPR007633%3BPhage_holin_2. TMHMM2 reporting 12 TMH's Present. no signal peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95702.1;transl_table=11
AM406670.1	EMBL	gene	3395119	3395355	.	-	.	ID=gene3136;Name=azo3086;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3086
AM406670.1	EMBL	CDS	3395119	3395355	.	-	0	ID=cds3083;Parent=gene3136;Dbxref=EnsemblGenomes-Gn:azo3086,EnsemblGenomes-Tr:CAL95703,InterPro:IPR001455,InterPro:IPR018720,UniProtKB/TrEMBL:A1KA47,NCBI_GP:CAL95703.1;Name=CAL95703.1;Note=Conserved hypothetical protein. Homology to ws1191 of W. succinogenes of 36%25 (trembl|Q7MRM8). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95703.1;transl_table=11
AM406670.1	EMBL	gene	3395348	3395812	.	-	.	ID=gene3137;Name=azo3087;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3087
AM406670.1	EMBL	CDS	3395348	3395812	.	-	0	ID=cds3084;Parent=gene3137;Dbxref=EnsemblGenomes-Gn:azo3087,EnsemblGenomes-Tr:CAL95704,InterPro:IPR012312,UniProtKB/TrEMBL:A1KA48,NCBI_GP:CAL95704.1;Name=CAL95704.1;Note=Conserved hypothetical protein. Homology to CV2710 of C.violaceum of 41%25 (trembl:Q7NUI8). Pfam: Hemerythrin HHE cation binding domain Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance%2C in Nereis diversicolor MP2_NERDI binds Cadmium so as to protect the organism from toxicity. However Hemerythrin is classically described as Oxygen-binding through two attached Fe2+ ions. And the bacterial Q7WX96_ALCEU is a regulator of response to NO%2C which suggests yet another set-up for its metal ligands. In Staphylococcus aureus P72360 has been noted to be important when the organism switches to living in environments with low oxygen concentrations%3B perhaps this protein acts as an oxygen store or scavenger. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95704.1;transl_table=11
AM406670.1	EMBL	gene	3396033	3396458	.	+	.	ID=gene3138;Name=norC;gbkey=Gene;gene=norC;gene_biotype=protein_coding;locus_tag=azo3088
AM406670.1	EMBL	CDS	3396033	3396458	.	+	0	ID=cds3085;Parent=gene3138;Dbxref=EnsemblGenomes-Gn:azo3088,EnsemblGenomes-Tr:CAL95705,GOA:A1KA49,InterPro:IPR003088,InterPro:IPR009056,UniProtKB/TrEMBL:A1KA49,NCBI_GP:CAL95705.1;Name=CAL95705.1;Note=Nitric-oxide reductase subunit C (EC 1.7.99.7) (Nitric oxide reductase cytochrome c subunit) (NOR small subunit).COMPONENT OF THE ANAEROBIC RESPIRATORY CHAIN THAT TRANSFORMS NITRATE TO DINITROGEN (DENITRIFICATION).54%25 IPR000345%3B CytC_heme_BS. Pfam%3B PF00034%3B Cytochrom_C%3B 1. SignalP: present TMHelix:1%3B~High confidence in function and specificity;gbkey=CDS;gene=norC;product=putative nitric-oxide reductase subunit C;protein_id=CAL95705.1;transl_table=11
AM406670.1	EMBL	gene	3396487	3397866	.	+	.	ID=gene3139;Name=norB;gbkey=Gene;gene=norB;gene_biotype=protein_coding;locus_tag=azo3089
AM406670.1	EMBL	CDS	3396487	3397866	.	+	0	ID=cds3086;Parent=gene3139;Dbxref=EnsemblGenomes-Gn:azo3089,EnsemblGenomes-Tr:CAL95706,GOA:A1KA50,InterPro:IPR000883,InterPro:IPR023615,InterPro:IPR023616,UniProtKB/TrEMBL:A1KA50,NCBI_GP:CAL95706.1;Name=CAL95706.1;Note=Nitric-oxide reductase subunit B (EC 1.7.99.7) (Nitric oxide reductase cytochrome b subunit). 69%25 similarity to the P.stutzeri NorB protein. COMPONENT OF THE ANAEROBIC RESPIRATORY CHAIN THAT TRANSFORMS NITRATE TO DINITROGEN (DENITRIFICATION). NorB IS THE CATALYTIC SUBUNIT OF THE ENZYME COMPLEX. SHOWS PROTON PUMP ACTIVITY ACROSS THE MEMBRANE IN DENITRIFYING BACTERIAL CELLS. THE MONONITROGEN REDUCTION IS PROBABLY COUPLED TO ELECTRON TRANSPORT PHOSPHORYLATION.Belongs to the heme-copper respiratory oxidase family. Swiss Prot: Q59647. IPR000883%3B COX1. PF00115%3B COX1%3B 1. TMHMM:predicted transmembrane helix present. SignalP: present ccoN: cytochrome c oxidase cbb3-type%3B~High confidence in function and specificity;gbkey=CDS;gene=norB;product=putative nitric-oxide reductase subunit B;protein_id=CAL95706.1;transl_table=11
AM406670.1	EMBL	gene	3397938	3398141	.	+	.	ID=gene3140;Name=azo3090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3090
AM406670.1	EMBL	CDS	3397938	3398141	.	+	0	ID=cds3087;Parent=gene3140;Dbxref=EnsemblGenomes-Gn:azo3090,EnsemblGenomes-Tr:CAL95707,InterPro:IPR021430,UniProtKB/TrEMBL:A1KA51,NCBI_GP:CAL95707.1;Name=CAL95707.1;Note=Conserved hypothetical protein. Homology to RS05091 of R.solanacearum of 76%25 (trembl:Q8Y1C8). No domains present. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95707.1;transl_table=11
AM406670.1	EMBL	gene	3398151	3398831	.	-	.	ID=gene3141;Name=trkA1;gbkey=Gene;gene=trkA1;gene_biotype=protein_coding;locus_tag=azo3091
AM406670.1	EMBL	CDS	3398151	3398831	.	-	0	ID=cds3088;Parent=gene3141;Dbxref=EnsemblGenomes-Gn:azo3091,EnsemblGenomes-Tr:CAL95708,GOA:A1KA52,InterPro:IPR003148,InterPro:IPR006037,InterPro:IPR016040,UniProtKB/TrEMBL:A1KA52,NCBI_GP:CAL95708.1;Name=CAL95708.1;Note=Potassium uptake protein. Part of the constitutive potassium transport systems trkG and trkH. May regulate the transport activity of trkG and trkH systems. Binds to NAD+ and NADH.Peripherally bound to the inner side of the inner membrane via the trkG and trkH proteins. 41%25 NAD_BS. IPR006037%3B TrkAC. IPR003148%3B TrkA_N. Pfam:PF02080%3B TrkA_C%3B 1. PF02254%3B TrkA_N%3B 1. Pfam:KTN: NAD-binding domain.%3B~Specificity unclear;gbkey=CDS;gene=trkA1;product=putative potassium uptake protein;protein_id=CAL95708.1;transl_table=11
AM406670.1	EMBL	gene	3398833	3400161	.	-	.	ID=gene3142;Name=trkH1;gbkey=Gene;gene=trkH1;gene_biotype=protein_coding;locus_tag=azo3092
AM406670.1	EMBL	CDS	3398833	3400161	.	-	0	ID=cds3089;Parent=gene3142;Dbxref=EnsemblGenomes-Gn:azo3092,EnsemblGenomes-Tr:CAL95709,GOA:A1KA53,InterPro:IPR003445,UniProtKB/TrEMBL:A1KA53,NCBI_GP:CAL95709.1;Name=CAL95709.1;Note=Membrane component of the potassium uptake system. 38%25 Cat_transpt. IPR004772%3B K_transptTrk. Pfam: PF02386%3B TrkH%3B 1. SignalP.present. TMHelix:9.%3B~High confidence in function and specificity;gbkey=CDS;gene=trkH1;product=putative potassium uptake protein%2C membrane component.;protein_id=CAL95709.1;transl_table=11
AM406670.1	EMBL	gene	3400221	3400913	.	-	.	ID=gene3143;Name=azo3093;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3093
AM406670.1	EMBL	CDS	3400221	3400913	.	-	0	ID=cds3090;Parent=gene3143;Dbxref=EnsemblGenomes-Gn:azo3093,EnsemblGenomes-Tr:CAL95710,GOA:A1KA54,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:A1KA54,NCBI_GP:CAL95710.1;Name=CAL95710.1;Note=Two component system transcriptional regulatory protein%2C 53%25 Identity to TrEMBL%3BQ7W532%2CQ8XUU6. Has SMART%3BSM00448%2CREC%2C cheY-homologous receiver domain%3BIPR001789%3BCheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues. Has OmpR%2C Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Has PF00486%2C Transcriptional regulatory protein%2C C terminal%3BIPR001867 Trans_reg_C%3B This domain is almost always found associated with the response regulator receiver domain (see INTERPRO:IPR001789). It may play a role in DNA binding;gbkey=CDS;product=two component system transcriptional regulatory protein;protein_id=CAL95710.1;transl_table=11
AM406670.1	EMBL	gene	3400910	3402439	.	-	.	ID=gene3144;Name=kdpD2;gbkey=Gene;gene=kdpD2;gene_biotype=protein_coding;locus_tag=azo3094
AM406670.1	EMBL	CDS	3400910	3402439	.	-	0	ID=cds3091;Parent=gene3144;Dbxref=EnsemblGenomes-Gn:azo3094,EnsemblGenomes-Tr:CAL95711,GOA:A1KA55,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR025201,UniProtKB/TrEMBL:A1KA55,NCBI_GP:CAL95711.1;Name=CAL95711.1;Note=Probable sensor for high-affinity potassium transport system%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=kdpD2;product=probable sensor for high-affinity potassium transport system;protein_id=CAL95711.1;transl_table=11
AM406670.1	EMBL	gene	3402633	3403433	.	+	.	ID=gene3145;Name=norQ;gbkey=Gene;gene=norQ;gene_biotype=protein_coding;locus_tag=azo3095
AM406670.1	EMBL	CDS	3402633	3403433	.	+	0	ID=cds3092;Parent=gene3145;Dbxref=EnsemblGenomes-Gn:azo3095,EnsemblGenomes-Tr:CAL95712,GOA:A1KA56,InterPro:IPR011704,InterPro:IPR013615,InterPro:IPR027417,UniProtKB/TrEMBL:A1KA56,NCBI_GP:CAL95712.1;Name=CAL95712.1;Note=Nitric-oxide reductase ATP/GTP binding component%2CNorQ. 68%25 FGGY_kin. TMHMM:present SignalP: present.%3B~High confidence in function and specificity;gbkey=CDS;gene=norQ;product=nitric-oxide reductase;protein_id=CAL95712.1;transl_table=11
AM406670.1	EMBL	gene	3403553	3404569	.	+	.	ID=gene3146;Name=azo3096;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3096
AM406670.1	EMBL	CDS	3403553	3404569	.	+	0	ID=cds3093;Parent=gene3146;Dbxref=EnsemblGenomes-Gn:azo3096,EnsemblGenomes-Tr:CAL95713,GOA:A1KA57,InterPro:IPR001450,InterPro:IPR017900,UniProtKB/TrEMBL:A1KA57,NCBI_GP:CAL95713.1;Name=CAL95713.1;Note=Conserved hypothetical iron-sulfur 4Fe-4S ferredoxin transmembrane protein. Homology to pbprb0648 of P. profundum (tremblnew|CAG22521). Involved in a membrane generated redox signal. Pfam: 4Fe-4S binding domain no signal peptide 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical iron-sulfur 4Fe-4S ferredoxin transmembrane protein;protein_id=CAL95713.1;transl_table=11
AM406670.1	EMBL	gene	3404573	3406684	.	+	.	ID=gene3147;Name=norD;gbkey=Gene;gene=norD;gene_biotype=protein_coding;locus_tag=azo3097
AM406670.1	EMBL	CDS	3404573	3406684	.	+	0	ID=cds3094;Parent=gene3147;Dbxref=EnsemblGenomes-Gn:azo3097,EnsemblGenomes-Tr:CAL95714,InterPro:IPR002035,UniProtKB/TrEMBL:A1KA58,NCBI_GP:CAL95714.1;Name=CAL95714.1;Note=Nitric oxide reductase NorD protein. COMPONENT OF THE ANAEROBIC RESPIRATORY CHAIN THAT TRANSFORMS NITRATE TO DINITROGEN (DENITRIFICATION). FUNCTION UNKNOWN BUT ESSENTIAL FOR THE DENITRIFICATION PROCESS. 35%25 similarity to B. japonicum NorD. TREMBL:Q89QB3 InterPro:IPR002035%3B VWF_A. Pfam:PF00092%3B VWA%3B 1. InterPro:SM00327:von Willebrand factor type A domain SignalP:present. TMHMM: presence of TMHhelix.%3B~High confidence in function and specificity;gbkey=CDS;gene=norD;product=nitric-oxide reductase accessory cytoplasmic protein;protein_id=CAL95714.1;transl_table=11
AM406670.1	EMBL	gene	3406687	3407451	.	+	.	ID=gene3148;Name=azo3098;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3098
AM406670.1	EMBL	CDS	3406687	3407451	.	+	0	ID=cds3095;Parent=gene3148;Dbxref=EnsemblGenomes-Gn:azo3098,EnsemblGenomes-Tr:CAL95715,GOA:A1KA59,InterPro:IPR000595,InterPro:IPR011991,InterPro:IPR012318,InterPro:IPR014710,InterPro:IPR018490,UniProtKB/TrEMBL:A1KA59,NCBI_GP:CAL95715.1;Name=CAL95715.1;Note=Putative Fnr-like transcriptional activator%2C%3B~Function unclear;gbkey=CDS;product=putative Fnr-like transcriptional activator;protein_id=CAL95715.1;transl_table=11
AM406670.1	EMBL	gene	3407478	3408710	.	-	.	ID=gene3149;Name=serA;gbkey=Gene;gene=serA;gene_biotype=protein_coding;locus_tag=azo3099
AM406670.1	EMBL	CDS	3407478	3408710	.	-	0	ID=cds3096;Parent=gene3149;Dbxref=EnsemblGenomes-Gn:azo3099,EnsemblGenomes-Tr:CAL95716,GOA:A1KA60,InterPro:IPR002912,InterPro:IPR006139,InterPro:IPR006140,InterPro:IPR016040,InterPro:IPR029015,InterPro:IPR029752,InterPro:IPR029753,UniProtKB/TrEMBL:A1KA60,NCBI_GP:CAL95716.1;Name=CAL95716.1;Note=D-3-phosphoglycerate dehydrogenase%2C SerA%2C is involved in the pathway of serine biosynthesis. Similar to sprot|SERA_ECOLI (61%25). InterPro (PF00389): D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain InterPro (PF01842): ACT domain InterPro (PF02826): D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain%3B~High confidence in function and specificity;gbkey=CDS;gene=serA;product=D-3-phosphoglycerate dehydrogenase;protein_id=CAL95716.1;transl_table=11
AM406670.1	EMBL	gene	3408745	3410151	.	-	.	ID=gene3150;Name=rdxB;gbkey=Gene;gene=rdxB;gene_biotype=protein_coding;locus_tag=azo3100
AM406670.1	EMBL	CDS	3408745	3410151	.	-	0	ID=cds3097;Parent=gene3150;Dbxref=EnsemblGenomes-Gn:azo3100,EnsemblGenomes-Tr:CAL95717,GOA:A1KA61,InterPro:IPR001450,InterPro:IPR013783,InterPro:IPR014116,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1KA61,NCBI_GP:CAL95717.1;Name=CAL95717.1;Note=Putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein. Homology to rdxB of R. sphaeroides of 39%25 (sprot|RDXB_RHOSH). Involved in a membrane generated redox signal%3B required to maintain repression of photosynthesis gene expression in the presence of oxygen. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding doamin no signal peptide probable 5 TMHs%3B~Family membership;gbkey=CDS;gene=rdxB;product=putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein;protein_id=CAL95717.1;transl_table=11
AM406670.1	EMBL	gene	3410296	3410757	.	+	.	ID=gene3151;Name=aau3;gbkey=Gene;gene=aau3;gene_biotype=protein_coding;locus_tag=azo3101
AM406670.1	EMBL	CDS	3410296	3410757	.	+	0	ID=cds3098;Parent=gene3151;Dbxref=EnsemblGenomes-Gn:azo3101,EnsemblGenomes-Tr:CAL95718,InterPro:IPR000944,InterPro:IPR011991,UniProtKB/TrEMBL:A1KA62,NCBI_GP:CAL95718.1;Name=CAL95718.1;Note=AAU3 protein precursor%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=aau3;product=AAU3 protein precursor;protein_id=CAL95718.1;transl_table=11
AM406670.1	EMBL	gene	3410759	3411988	.	-	.	ID=gene3152;Name=azo3102;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3102
AM406670.1	EMBL	CDS	3410759	3411988	.	-	0	ID=cds3099;Parent=gene3152;Dbxref=EnsemblGenomes-Gn:azo3102,EnsemblGenomes-Tr:CAL95719,GOA:A1KA63,InterPro:IPR000644,InterPro:IPR007065,UniProtKB/TrEMBL:A1KA63,NCBI_GP:CAL95719.1;Name=CAL95719.1;Note=Conserved hypothetical membrane protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95719.1;transl_table=11
AM406670.1	EMBL	gene	3412240	3412638	.	+	.	ID=gene3153;Name=nosC;gbkey=Gene;gene=nosC;gene_biotype=protein_coding;locus_tag=azo3103
AM406670.1	EMBL	CDS	3412240	3412638	.	+	0	ID=cds3100;Parent=gene3153;Dbxref=EnsemblGenomes-Gn:azo3103,EnsemblGenomes-Tr:CAL95720,GOA:A1KA64,InterPro:IPR002323,InterPro:IPR009056,UniProtKB/TrEMBL:A1KA64,NCBI_GP:CAL95720.1;Name=CAL95720.1;Note=Conserved hypothetical cytochrome c5. Homology to nosC of A. eutrophus of 62%25 (trembl|Q7WX89). This basic c-type monoheme cytochrome has an unusually low redox potential compared with mitochondrial cytochrome c. It is reactive with cytochrome c oxidases but not with reductases. InterPro: Cytochrome c class I (IPR003088) Pfam: Cytorchrome C. signal peptide. no TMHs%3B~Family membership;gbkey=CDS;gene=nosC;product=conserved hypothetical cytochrome c5;protein_id=CAL95720.1;transl_table=11
AM406670.1	EMBL	gene	3412697	3412969	.	-	.	ID=gene3154;Name=azo3104;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3104
AM406670.1	EMBL	CDS	3412697	3412969	.	-	0	ID=cds3101;Parent=gene3154;Dbxref=EnsemblGenomes-Gn:azo3104,EnsemblGenomes-Tr:CAL95721,UniProtKB/TrEMBL:A1KA65,NCBI_GP:CAL95721.1;Name=CAL95721.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95721.1;transl_table=11
AM406670.1	EMBL	gene	3413017	3413235	.	-	.	ID=gene3155;Name=azo3105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3105
AM406670.1	EMBL	CDS	3413017	3413235	.	-	0	ID=cds3102;Parent=gene3155;Dbxref=EnsemblGenomes-Gn:azo3105,EnsemblGenomes-Tr:CAL95722,InterPro:IPR021948,UniProtKB/TrEMBL:A1KA66,NCBI_GP:CAL95722.1;Name=CAL95722.1;Note=Conserved hypothetical protein. Homology to Rgel02003456 of Rubrivivax gelatinosus of 68%25 (gi|47572283|ref|ZP_00242328.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95722.1;transl_table=11
AM406670.1	EMBL	gene	3413290	3413937	.	-	.	ID=gene3156;Name=azo3106;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3106
AM406670.1	EMBL	CDS	3413290	3413937	.	-	0	ID=cds3103;Parent=gene3156;Dbxref=EnsemblGenomes-Gn:azo3106,EnsemblGenomes-Tr:CAL95723,InterPro:IPR008719,UniProtKB/TrEMBL:A1KA67,NCBI_GP:CAL95723.1;Name=CAL95723.1;Note=conserved hypothetical secreted protein. Homology to TdenA01000391 of Thiobacillus denitrificans of 42%25 (gi|52008094|ref|ZP_00335471.1|(NBCI ENTREZ)). no domians predicted. signal peptide. TMH in signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95723.1;transl_table=11
AM406670.1	EMBL	gene	3413940	3414467	.	-	.	ID=gene3157;Name=nosL;gbkey=Gene;gene=nosL;gene_biotype=protein_coding;locus_tag=azo3107
AM406670.1	EMBL	CDS	3413940	3414467	.	-	0	ID=cds3104;Parent=gene3157;Dbxref=EnsemblGenomes-Gn:azo3107,EnsemblGenomes-Tr:CAL95724,InterPro:IPR008719,UniProtKB/TrEMBL:A1KA68,NCBI_GP:CAL95724.1;Name=CAL95724.1;Note=Putative NosL protein. Homology to nosL of S. meliloti of 38%25 (trembl|O07331). NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18%2C540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue%2C and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocenter assembly. probable signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=nosL;product=putative NosL protein;protein_id=CAL95724.1;transl_table=11
AM406670.1	EMBL	gene	3414476	3415291	.	-	.	ID=gene3158;Name=nosY;gbkey=Gene;gene=nosY;gene_biotype=protein_coding;locus_tag=azo3108
AM406670.1	EMBL	CDS	3414476	3415291	.	-	0	ID=cds3105;Parent=gene3158;Dbxref=EnsemblGenomes-Gn:azo3108,EnsemblGenomes-Tr:CAL95725,UniProtKB/TrEMBL:A1KA69,NCBI_GP:CAL95725.1;Name=CAL95725.1;Note=Membrane protein nosY precursor.INVOLVED IN COPPER PROCESSING. Part of the ABC transporter complex nosDFY involved in copper import. Probably responsible for the translocation of the substrate across the membrane. 43%25 Similar to the copper permease protein%2C nosY in P.stutzeri. TREMBL:Q9F0W1 InterPro:IPR001117%3B Cu-oxidase. SignalP: present. Number of predicted TMHs:6%3B~High confidence in function and specificity;gbkey=CDS;gene=nosY;product=putative copper transport system%2C permease protein;protein_id=CAL95725.1;transl_table=11
AM406670.1	EMBL	gene	3415299	3416243	.	-	.	ID=gene3159;Name=nosF;gbkey=Gene;gene=nosF;gene_biotype=protein_coding;locus_tag=azo3109
AM406670.1	EMBL	CDS	3415299	3416243	.	-	0	ID=cds3106;Parent=gene3159;Dbxref=EnsemblGenomes-Gn:azo3109,EnsemblGenomes-Tr:CAL95726,GOA:A1KA70,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KA70,NCBI_GP:CAL95726.1;Name=CAL95726.1;Note=Copper transport ATP-binding protein nosF.INVOLVED IN COPPER PROCESSING/TRANSPORT.Part of the ABC transporter complex nosDFY involved in copper import. 3%25 ABC_tran%3B 1. InterPro:IPR003593%3B AAA_ATPase. IPR003439%3B ABC_transporter. InterPro:PS50101:ATP/GTP-binding site motif A (P-loop). InterPro:SM00382:AAA ATPase superfamily.%3B~High confidence in function and specificity;gbkey=CDS;gene=nosF;product=putative copper transport system%2C ATP-binding protein;protein_id=CAL95726.1;transl_table=11
AM406670.1	EMBL	gene	3416272	3417549	.	-	.	ID=gene3160;Name=nosD;gbkey=Gene;gene=nosD;gene_biotype=protein_coding;locus_tag=azo3110
AM406670.1	EMBL	CDS	3416272	3417549	.	-	0	ID=cds3107;Parent=gene3160;Dbxref=EnsemblGenomes-Gn:azo3110,EnsemblGenomes-Tr:CAL95727,InterPro:IPR006626,InterPro:IPR006633,InterPro:IPR007742,InterPro:IPR011050,InterPro:IPR012334,InterPro:IPR022441,InterPro:IPR026464,UniProtKB/TrEMBL:A1KA71,NCBI_GP:CAL95727.1;Name=CAL95727.1;Note=Copper-binding periplasmic protein precursor. INVOLVED IN COPPER PROCESSING AND TRANSPORT%3B IN THE ASSEMBLY OF THE COPPER CHROMOPHORES OF NITROUS OXIDE REDUCTASE.Part of the ABC transporter complex nosDFY involved in copper import. Similar to the putative periplasmic-binding protein nosD precursor from: P.fluorescens (36%25)TREMBL:Q9F0W3 InterPro:IPR006633%3B CASH. IPR007742%3B NosD.IPR006626%3B PbH1. Pfam:PF05048%3B NosD%3B 1. Signal peptide: present.%3B~High confidence in function and specificity;gbkey=CDS;gene=nosD;product=putative copper transport system%2C periplasmic-binding protein;protein_id=CAL95727.1;transl_table=11
AM406670.1	EMBL	gene	3417557	3417988	.	-	.	ID=gene3161;Name=nosRb;gbkey=Gene;gene=nosRb;gene_biotype=protein_coding;locus_tag=azo3111
AM406670.1	EMBL	CDS	3417557	3417988	.	-	0	ID=cds3108;Parent=gene3161;Dbxref=EnsemblGenomes-Gn:azo3111,EnsemblGenomes-Tr:CAL95728,UniProtKB/TrEMBL:A1KA72,NCBI_GP:CAL95728.1;Name=CAL95728.1;Note=Conserved hypothetical transcriptional activator for nitrous-oxide reductase%2C C-termial domain. Homology to nosr (C-terminal domain) of Azoarcus sp. EbN1 of 74%25 (gnl|keqq|eba:ebB224(KEGG)). no domains predicted. no signal peptide. probable 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=nosRb;product=conserved hypothetical transcriptional activator for nitrous-oxide reductase%2C C-termial domain;protein_id=CAL95728.1;transl_table=11
AM406670.1	EMBL	gene	3418003	3420174	.	-	.	ID=gene3162;Name=nosRa;gbkey=Gene;gene=nosRa;gene_biotype=protein_coding;locus_tag=azo3112
AM406670.1	EMBL	CDS	3418003	3420174	.	-	0	ID=cds3109;Parent=gene3162;Dbxref=EnsemblGenomes-Gn:azo3112,EnsemblGenomes-Tr:CAL95729,GOA:A1KA73,InterPro:IPR001450,InterPro:IPR007329,InterPro:IPR011399,InterPro:IPR017900,UniProtKB/TrEMBL:A1KA73,NCBI_GP:CAL95729.1;Name=CAL95729.1;Note=Regulatory protein nosR. Transcriptional activation of the nitrous-oxide reductase gene nosZ. Similar to SWISSPROT: sprot|NOSR_PSEST (37%25 Pseudomonas stutzeri (Pseudomonas perfectomarina)%2C regulatory protein NosR). TMHMM reporting 5 transmembrane helices. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=nosRa;product=transcriptional activator for nitrous-oxide reductase%2C N-terminal domain;protein_id=CAL95729.1;transl_table=11
AM406670.1	EMBL	gene	3420337	3422271	.	-	.	ID=gene3163;Name=nosZ;gbkey=Gene;gene=nosZ;gene_biotype=protein_coding;locus_tag=azo3113
AM406670.1	EMBL	CDS	3420337	3422271	.	-	0	ID=cds3110;Parent=gene3163;Dbxref=EnsemblGenomes-Gn:azo3113,EnsemblGenomes-Tr:CAL95730,GOA:A1KA74,InterPro:IPR002429,InterPro:IPR006311,InterPro:IPR008972,InterPro:IPR011045,InterPro:IPR015943,InterPro:IPR023644,UniProtKB/TrEMBL:A1KA74,NCBI_GP:CAL95730.1;Name=CAL95730.1;Note=Nitrous-oxide reductase. Homology to nosZ of a. eutrophus of 78%25 (sprot|NOSZ_ALCEU) Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide (By similarity). no domains probable signal peptide no TMHs met_pdase_I: methionine aminopeptidas%3B~High confidence in function and specificity;gbkey=CDS;gene=nosZ;product=nitrous-oxide reductase;protein_id=CAL95730.1;transl_table=11
AM406670.1	EMBL	gene	3422454	3422729	.	-	.	ID=gene3164;Name=azo3114;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3114
AM406670.1	EMBL	CDS	3422454	3422729	.	-	0	ID=cds3111;Parent=gene3164;Dbxref=EnsemblGenomes-Gn:azo3114,EnsemblGenomes-Tr:CAL95731,UniProtKB/TrEMBL:A1KA75,NCBI_GP:CAL95731.1;Name=CAL95731.1;Note=Hypothetical secreted protein. no homology to the data bank. no domains predicted. signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95731.1;transl_table=11
AM406670.1	EMBL	gene	3423041	3423134	.	-	.	ID=gene3165;Name=tRNA-Ser;gbkey=Gene;gene=tRNA-Ser;gene_biotype=tRNA;locus_tag=azo_tRNA_0047
AM406670.1	EMBL	tRNA	3423041	3423134	.	-	.	ID=rna53;Parent=gene3165;anticodon=(pos:complement(3423098..3423100));gbkey=tRNA;gene=tRNA-Ser;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ser
AM406670.1	EMBL	exon	3423041	3423134	.	-	.	ID=id54;Parent=rna53;anticodon=(pos:complement(3423098..3423100));gbkey=tRNA;gene=tRNA-Ser;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ser
AM406670.1	EMBL	gene	3423208	3424434	.	-	.	ID=gene3166;Name=lysC;gbkey=Gene;gene=lysC;gene_biotype=protein_coding;locus_tag=azo3115
AM406670.1	EMBL	CDS	3423208	3424434	.	-	0	ID=cds3112;Parent=gene3166;Dbxref=EnsemblGenomes-Gn:azo3115,EnsemblGenomes-Tr:CAL95732,GOA:A1KA76,InterPro:IPR001048,InterPro:IPR001057,InterPro:IPR001341,InterPro:IPR002912,InterPro:IPR005260,InterPro:IPR018042,InterPro:IPR027795,UniProtKB/TrEMBL:A1KA76,NCBI_GP:CAL95732.1;Name=CAL95732.1;Note=Aspartate kinase (AK) catalyzes the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine%2C which participates in the biosynthesis of threonine%2C isoleucine and methionine. Similar to trembl|Q8RU02 (80%25) and to pir|C83531 (74%25). Pfam (PF00696): Amino acid kinase family Pfam (PF01842): two ACT domain%3B~High confidence in function and specificity;gbkey=CDS;gene=lysC;product=aspartate kinase;protein_id=CAL95732.1;transl_table=11
AM406670.1	EMBL	gene	3424699	3424995	.	+	.	ID=gene3167;Name=azo3116;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3116
AM406670.1	EMBL	CDS	3424699	3424995	.	+	0	ID=cds3113;Parent=gene3167;Dbxref=EnsemblGenomes-Gn:azo3116,EnsemblGenomes-Tr:CAL95733,GOA:A1KA77,InterPro:IPR001387,InterPro:IPR010982,UniProtKB/TrEMBL:A1KA77,NCBI_GP:CAL95733.1;Name=CAL95733.1;Note=Conserved hypothetical protein. Homology to NMA0336 of N.meningitidis of 59%25 (trembl:Q9JRG4) Has PF01381 Helix-turn-helix:IPR001387:HTH_3%3BThis is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein%2C bacterial methylases%2Cvarious bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95733.1;transl_table=11
AM406670.1	EMBL	gene	3425017	3425976	.	-	.	ID=gene3168;Name=azo3117;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3117
AM406670.1	EMBL	CDS	3425017	3425976	.	-	0	ID=cds3114;Parent=gene3168;Dbxref=EnsemblGenomes-Gn:azo3117,EnsemblGenomes-Tr:CAL95734,GOA:A1KA78,InterPro:IPR013785,UniProtKB/TrEMBL:A1KA78,NCBI_GP:CAL95734.1;Name=CAL95734.1;Note=Conserved hypothetical protein. Homology to ne1518 of N. europaea of 43%25 (trembl|Q82UG8). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95734.1;transl_table=11
AM406670.1	EMBL	gene	3425991	3426446	.	+	.	ID=gene3169;Name=azo3118;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3118
AM406670.1	EMBL	CDS	3425991	3426446	.	+	0	ID=cds3115;Parent=gene3169;Dbxref=EnsemblGenomes-Gn:azo3118,EnsemblGenomes-Tr:CAL95735,GOA:A1KA79,InterPro:IPR007115,UniProtKB/TrEMBL:A1KA79,NCBI_GP:CAL95735.1;Name=CAL95735.1;Note=Lyase%2C putative 6-pyruvoyl tetrahydrobiopterin synthase protein InterPro: 6-pyruvoyl tetrahydropterin synthase TIGRFAM: 6PTHBS: 6-pyruvoyl tetrahydrobiopterin synthase%3B~Specificity unclear;gbkey=CDS;product=6-pyruvoyltetrahydropterin synthase;protein_id=CAL95735.1;transl_table=11
AM406670.1	EMBL	gene	3426502	3427671	.	-	.	ID=gene3170;Name=azo3119;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3119
AM406670.1	EMBL	CDS	3426502	3427671	.	-	0	ID=cds3116;Parent=gene3170;Dbxref=EnsemblGenomes-Gn:azo3119,EnsemblGenomes-Tr:CAL95736,GOA:A1KA80,InterPro:IPR002560,InterPro:IPR005804,UniProtKB/TrEMBL:A1KA80,NCBI_GP:CAL95736.1;Name=CAL95736.1;Note=Entry name:- TREMBL:Q8XWM4 InterPro:- IPR001522%3B Desaturase. IPR005804%3B Fa_desat. Pfam:- PF00487%3B FA_desaturase%3B 1. Identities %3D 244/390 (62%25) Prediction: Non-secretory protein Signal peptide probability: 0.008 Number of predicted TMHs: 3%3B~Family membership;gbkey=CDS;product=probable fatty acid desaturase;protein_id=CAL95736.1;transl_table=11
AM406670.1	EMBL	gene	3427710	3429119	.	-	.	ID=gene3171;Name=azo3120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3120
AM406670.1	EMBL	CDS	3427710	3429119	.	-	0	ID=cds3117;Parent=gene3171;Dbxref=EnsemblGenomes-Gn:azo3120,EnsemblGenomes-Tr:CAL95737,GOA:A1KA81,InterPro:IPR006685,InterPro:IPR010920,InterPro:IPR011014,InterPro:IPR011066,UniProtKB/TrEMBL:A1KA81,NCBI_GP:CAL95737.1;Name=CAL95737.1;Note=Region start changed from 3429549 to 3429093 (-456 bases);gbkey=CDS;product=mechanosensitive ion channel;protein_id=CAL95737.1;transl_table=11
AM406670.1	EMBL	gene	3429122	3429700	.	-	.	ID=gene3172;Name=azo3121;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3121
AM406670.1	EMBL	CDS	3429122	3429700	.	-	0	ID=cds3118;Parent=gene3172;Dbxref=EnsemblGenomes-Gn:azo3121,EnsemblGenomes-Tr:CAL95738,GOA:A1KA82,InterPro:IPR001736,InterPro:IPR006311,InterPro:IPR025202,UniProtKB/TrEMBL:A1KA82,NCBI_GP:CAL95738.1;Name=CAL95738.1;Note=Putative endonuclease%2C42%25 Identity to TrEMBL%3BQ8XWM2%2C 33%25 Identity to TrEMBL%3BQ8VMF9. Has Signal peptide. Has PLDc%2C Phospholipase D. Active site motifs%3B The PLD superfamily includes enzymes involved in signal transduction%2C lipid biosynthesis%2C endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety%2C and that most of these enzymes are active as bi-lobed monomers or dimers.;gbkey=CDS;product=putative endonuclease;protein_id=CAL95738.1;transl_table=11
AM406670.1	EMBL	gene	3429690	3430982	.	-	.	ID=gene3173;Name=azo3122;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3122
AM406670.1	EMBL	CDS	3429690	3430982	.	-	0	ID=cds3119;Parent=gene3173;Dbxref=EnsemblGenomes-Gn:azo3122,EnsemblGenomes-Tr:CAL95739,InterPro:IPR001678,InterPro:IPR023267,InterPro:IPR029063,UniProtKB/TrEMBL:A1KA83,NCBI_GP:CAL95739.1;Name=CAL95739.1;Note=SUN protein%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95739.1;transl_table=11
AM406670.1	EMBL	gene	3430991	3432181	.	-	.	ID=gene3174;Name=azo3123;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3123
AM406670.1	EMBL	CDS	3430991	3432181	.	-	0	ID=cds3120;Parent=gene3174;Dbxref=EnsemblGenomes-Gn:azo3123,EnsemblGenomes-Tr:CAL95740,InterPro:IPR021457,UniProtKB/TrEMBL:A1KA84,NCBI_GP:CAL95740.1;Name=CAL95740.1;Note=Conserved hypothetical secreted protein. Homology to ebA651 of Azoarcus sp. EbN1 of 37%25 (gnl|keqq|eba:ebA651(KEGG)). InterproterPro (IPR000694): Proline-rich region. SignalP reporting signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95740.1;transl_table=11
AM406670.1	EMBL	gene	3432188	3432829	.	-	.	ID=gene3175;Name=azo3124;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3124
AM406670.1	EMBL	CDS	3432188	3432829	.	-	0	ID=cds3121;Parent=gene3175;Dbxref=EnsemblGenomes-Gn:azo3124,EnsemblGenomes-Tr:CAL95741,GOA:A1KA85,InterPro:IPR001555,InterPro:IPR002376,InterPro:IPR004607,UniProtKB/TrEMBL:A1KA85,NCBI_GP:CAL95741.1;Name=CAL95741.1;Note=Phosphoribosylglycinamide formyltransferase (5'-phosphoribosylglycinamide transformylase) (GAR transformylase) (GART) (2-amino-N-ribosylacetamide 5'-phosphate transformylase) (GAR formyltransferase) (Glycinamide ribonucleotide transformylase) (GAR TFase) (5%2C10-methenyltetrahydrofolate:2-amino-N-ribosylacetamide ribonucleotide transformylase) InterPro: Phosphoribosylglycinamide formyltransferase%3B~High confidence in function and specificity;gbkey=CDS;product=phosphoribosylglycinamide formyltransferase;protein_id=CAL95741.1;transl_table=11
AM406670.1	EMBL	gene	3432869	3433585	.	-	.	ID=gene3176;Name=azo3125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3125
AM406670.1	EMBL	CDS	3432869	3433585	.	-	0	ID=cds3122;Parent=gene3176;Dbxref=EnsemblGenomes-Gn:azo3125,EnsemblGenomes-Tr:CAL95742,UniProtKB/TrEMBL:A1KA86,NCBI_GP:CAL95742.1;Name=CAL95742.1;Note=Conserved hypothetical secreted protein. Homology to orf58 of Pseudomonas sp. of 42%25 (trembl|Q937A2(SRS)). No domains predicted. Signal P predicts signal peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95742.1;transl_table=11
AM406670.1	EMBL	gene	3433752	3435617	.	+	.	ID=gene3177;Name=mutL;gbkey=Gene;gene=mutL;gene_biotype=protein_coding;locus_tag=azo3126
AM406670.1	EMBL	CDS	3433752	3435617	.	+	0	ID=cds3123;Parent=gene3177;Dbxref=EnsemblGenomes-Gn:azo3126,EnsemblGenomes-Tr:CAL95743,GOA:A1KA87,InterPro:IPR002099,InterPro:IPR003594,InterPro:IPR011186,InterPro:IPR013507,InterPro:IPR014721,InterPro:IPR014762,InterPro:IPR014790,InterPro:IPR020568,InterPro:IPR020667,UniProtKB/TrEMBL:A1KA87,NCBI_GP:CAL95743.1;Name=CAL95743.1;Note=DNA mismatch repair protein mutL. This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity). InterPro: DNA mismatch repair proteins mutL/hexB/PMS1 mutl: DNA mismatch repair protein MutL%3B~High confidence in function and specificity;gbkey=CDS;gene=mutL;product=DNA mismatch repair protein;protein_id=CAL95743.1;transl_table=11
AM406670.1	EMBL	gene	3435648	3436235	.	-	.	ID=gene3178;Name=azo3127;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3127
AM406670.1	EMBL	CDS	3435648	3436235	.	-	0	ID=cds3124;Parent=gene3178;Dbxref=EnsemblGenomes-Gn:azo3127,EnsemblGenomes-Tr:CAL95744,InterPro:IPR025392,UniProtKB/TrEMBL:A1KA88,NCBI_GP:CAL95744.1;Name=CAL95744.1;Note=Hypothetical secreted protein no homology of the entire protein to a protein of similar lengt in the data bank no domains predicted signal peptide no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95744.1;transl_table=11
AM406670.1	EMBL	gene	3436442	3436924	.	+	.	ID=gene3179;Name=nikR;gbkey=Gene;gene=nikR;gene_biotype=protein_coding;locus_tag=azo3128
AM406670.1	EMBL	CDS	3436442	3436924	.	+	0	ID=cds3125;Parent=gene3179;Dbxref=EnsemblGenomes-Gn:azo3128,EnsemblGenomes-Tr:CAL95745,GOA:A1KA89,InterPro:IPR002145,InterPro:IPR010985,InterPro:IPR013321,InterPro:IPR014864,InterPro:IPR022988,UniProtKB/TrEMBL:A1KA89,NCBI_GP:CAL95745.1;Name=CAL95745.1;Note=Nickel responsive regulator protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=nikR;product=nickel responsive regulator protein;protein_id=CAL95745.1;transl_table=11
AM406670.1	EMBL	gene	3437106	3437372	.	+	.	ID=gene3180;Name=azo3129;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3129
AM406670.1	EMBL	CDS	3437106	3437372	.	+	0	ID=cds3126;Parent=gene3180;Dbxref=EnsemblGenomes-Gn:azo3129,EnsemblGenomes-Tr:CAL95746,UniProtKB/TrEMBL:A1KA90,NCBI_GP:CAL95746.1;Name=CAL95746.1;Note=Conserved hypothetical protein. Homology to orfJ of E. coli of 33%25 (trembl|O70046). no domains predicted .no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95746.1;transl_table=11
AM406670.1	EMBL	gene	3437383	3438279	.	-	.	ID=gene3181;Name=dnaL;gbkey=Gene;gene=dnaL;gene_biotype=protein_coding;locus_tag=azo3130
AM406670.1	EMBL	CDS	3437383	3438279	.	-	0	ID=cds3127;Parent=gene3181;Dbxref=EnsemblGenomes-Gn:azo3130,EnsemblGenomes-Tr:CAL95747,GOA:A1KA91,InterPro:IPR012310,InterPro:IPR012340,InterPro:IPR029319,UniProtKB/TrEMBL:A1KA91,NCBI_GP:CAL95747.1;Name=CAL95747.1;Note=DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]). CATALYZES EFFICIENT STRAND JOINING ON A SINGLE NICKED DNA. InterPro: ATP-dependent DNA ligase%3B~Specificity unclear;gbkey=CDS;gene=dnaL;product=DNA ligase;protein_id=CAL95747.1;transl_table=11
AM406670.1	EMBL	gene	3438489	3439451	.	+	.	ID=gene3182;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=azo3131
AM406670.1	EMBL	CDS	3438489	3439451	.	+	0	ID=cds3128;Parent=gene3182;Dbxref=EnsemblGenomes-Gn:azo3131,EnsemblGenomes-Tr:CAL95748,GOA:A1KA92,InterPro:IPR002627,InterPro:IPR018022,InterPro:IPR027417,NCBI_GP:CAL95748.1;Name=CAL95748.1;Note=tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT). Catalyzes the first step in the biosynthesis of 2-methylthio-N6-(delta(2)-isopentenyl)-adenosine (MS[2]I[6]A]) adjacent to the anticodon of several tRNA species.%3B~High confidence in function and specificity;gbkey=CDS;gene=miaA;product=MiaA protein;protein_id=CAL95748.1;transl_table=11
AM406670.1	EMBL	gene	3439484	3440029	.	+	.	ID=gene3183;Name=azo3132;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3132
AM406670.1	EMBL	CDS	3439484	3440029	.	+	0	ID=cds3129;Parent=gene3183;Dbxref=EnsemblGenomes-Gn:azo3132,EnsemblGenomes-Tr:CAL95749,InterPro:IPR009858,UniProtKB/TrEMBL:A1KA93,NCBI_GP:CAL95749.1;Name=CAL95749.1;Note=Hypothetical protein%2C 56%25 identity(71%25 similarity) with TrEMBL%3BQ6LK82 Has PF07209%2C Protein of unknown function (DUF1415)%3BIPR009858%3B This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown. Signal peptide or TMH not present. EIIA-man: PTS system fructose subfamily;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95749.1;transl_table=11
AM406670.1	EMBL	gene	3440085	3440531	.	-	.	ID=gene3184;Name=azo3133;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3133
AM406670.1	EMBL	CDS	3440085	3440531	.	-	0	ID=cds3130;Parent=gene3184;Dbxref=EnsemblGenomes-Gn:azo3133,EnsemblGenomes-Tr:CAL95750,UniProtKB/TrEMBL:A1KA94,NCBI_GP:CAL95750.1;Name=CAL95750.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology of the protein to a protein of similar size. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95750.1;transl_table=11
AM406670.1	EMBL	gene	3440553	3443636	.	-	.	ID=gene3185;Name=azo3134;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3134
AM406670.1	EMBL	CDS	3440553	3443636	.	-	0	ID=cds3131;Parent=gene3185;Dbxref=EnsemblGenomes-Gn:azo3134,EnsemblGenomes-Tr:CAL95751,GOA:A1KA95,InterPro:IPR001036,InterPro:IPR027463,UniProtKB/TrEMBL:A1KA95,NCBI_GP:CAL95751.1;Name=CAL95751.1;Note=AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q9HW27 (38%25 identity)%3B SWISSPROT:Q57124 (33%25 identity). InterPro (IPR001036): Acriflavin resistance protein. Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TMHMM predicting 12 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear;gbkey=CDS;product=RND efflux transporter%2C permease protein;protein_id=CAL95751.1;transl_table=11
AM406670.1	EMBL	gene	3443646	3444743	.	-	.	ID=gene3186;Name=azo3135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3135
AM406670.1	EMBL	CDS	3443646	3444743	.	-	0	ID=cds3132;Parent=gene3186;Dbxref=EnsemblGenomes-Gn:azo3135,EnsemblGenomes-Tr:CAL95752,GOA:A1KA96,InterPro:IPR006143,UniProtKB/TrEMBL:A1KA96,NCBI_GP:CAL95752.1;Name=CAL95752.1;Note=HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family%2C TREMBL:Q7W437 (52%25 identity)%3B TREMBL:Q8EFT5 (32%25 identity). InterPro (IPR006143): Secretion protein HlyD. Pfam (PF00529): HlyD family secretion protein. TMHMM reporting one transmembrane helix. TC (8.A.1): The Membrane Fusion Protein (MFP) Family.%3B~Family membership;gbkey=CDS;product=membrane fusion protein;protein_id=CAL95752.1;transl_table=11
AM406670.1	EMBL	gene	3444879	3445937	.	-	.	ID=gene3187;Name=purM;gbkey=Gene;gene=purM;gene_biotype=protein_coding;locus_tag=azo3136
AM406670.1	EMBL	CDS	3444879	3445937	.	-	0	ID=cds3133;Parent=gene3187;Dbxref=EnsemblGenomes-Gn:azo3136,EnsemblGenomes-Tr:CAL95753,GOA:A1KA97,InterPro:IPR000728,InterPro:IPR004733,InterPro:IPR010918,InterPro:IPR016188,NCBI_GP:CAL95753.1;Name=CAL95753.1;Note=Phosphoribosylformylglycinamidine cyclo-ligase (Phosphoribosyl-aminoimidazole synthetase) (Phosphoribosylaminoimidazole synthetase) (AIR synthase) (AIR synthetase) (AIRS) InterPro: Phosphoribosylformylglycinamidine cyclo-ligase%3B~High confidence in function and specificity;gbkey=CDS;gene=purM;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=CAL95753.1;transl_table=11
AM406670.1	EMBL	gene	3446157	3447275	.	+	.	ID=gene3188;Name=azo3137;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3137
AM406670.1	EMBL	CDS	3446157	3447275	.	+	0	ID=cds3134;Parent=gene3188;Dbxref=EnsemblGenomes-Gn:azo3137,EnsemblGenomes-Tr:CAL95754,InterPro:IPR002549,UniProtKB/TrEMBL:A1KA98,NCBI_GP:CAL95754.1;Name=CAL95754.1;Note=Conserved hypothetical membrane protein. This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases.It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution. TREMBL:Q82Y01: 39%25 identity%3B 58%25 similarity. TREMBL:Q8XW51: 37%25 identity%3B 53%25 similarity. InterPro:IPR002549 Pfam: PF01594:Protein of unknown function DUF70 Signal P predicted signal peptide and TMHMM predicted transmembrane helices%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95754.1;transl_table=11
AM406670.1	EMBL	gene	3447272	3447961	.	+	.	ID=gene3189;Name=azo3138;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3138
AM406670.1	EMBL	CDS	3447272	3447961	.	+	0	ID=cds3135;Parent=gene3189;Dbxref=EnsemblGenomes-Gn:azo3138,EnsemblGenomes-Tr:CAL95755,GOA:A1KA99,InterPro:IPR013317,InterPro:IPR017788,InterPro:IPR027417,UniProtKB/TrEMBL:A1KA99,NCBI_GP:CAL95755.1;Name=CAL95755.1;Note=Region start changed from 3447165 to 3447246 (-81 bases);gbkey=CDS;product=putative chromosomal replication initiator protein;protein_id=CAL95755.1;transl_table=11
AM406670.1	EMBL	gene	3447999	3448661	.	+	.	ID=gene3190;Name=azo3139;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3139
AM406670.1	EMBL	CDS	3447999	3448661	.	+	0	ID=cds3136;Parent=gene3190;Dbxref=EnsemblGenomes-Gn:azo3139,EnsemblGenomes-Tr:CAL95756,GOA:A1KAA0,InterPro:IPR006383,InterPro:IPR006385,InterPro:IPR023214,UniProtKB/TrEMBL:A1KAA0,NCBI_GP:CAL95756.1;Name=CAL95756.1;Note=Haloacid dehalogenase-like hydrolase family is structurally different from the alpha/beta hydrolase family (abhydrolase). This family includes L-2-haloacid dehalogenase%2C epoxide hydrolases and phosphatases. Similar to trembl|Q82XZ3 (63%25) and to pir|B83604 (47%25). Pfam (PF00702): haloacid dehalogenase-like hydrolase%3B~Family membership;gbkey=CDS;product=haloacid dehalogenase-like hydrolase family protein;protein_id=CAL95756.1;transl_table=11
AM406670.1	EMBL	gene	3448752	3450110	.	+	.	ID=gene3191;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=azo3140
AM406670.1	EMBL	CDS	3448752	3450110	.	+	0	ID=cds3137;Parent=gene3191;Dbxref=EnsemblGenomes-Gn:azo3140,EnsemblGenomes-Tr:CAL95757,GOA:A1KAA1,InterPro:IPR002646,InterPro:IPR010206,InterPro:IPR025866,UniProtKB/TrEMBL:A1KAA1,NCBI_GP:CAL95757.1;Name=CAL95757.1;Note=Probable Poly(A) polymerase. Homology to pcnB of E. coli of 41%25 (sprot|PCNB_ECOLI) POLYMERASE THAT CREATES THE 3POLY(A) TAIL FOUND IN SOME MRNAS. SEEMS TO BE INVOLVED IN PLASMID COPY NUMBER CONTROL. Pfam: Poly A polymerase family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=pcnB;product=probable poly(A) polymerase;protein_id=CAL95757.1;transl_table=11
AM406670.1	EMBL	gene	3450110	3450607	.	+	.	ID=gene3192;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=azo3141
AM406670.1	EMBL	CDS	3450110	3450607	.	+	0	ID=cds3138;Parent=gene3192;Dbxref=EnsemblGenomes-Gn:azo3141,EnsemblGenomes-Tr:CAL95758,GOA:A1KAA2,InterPro:IPR000550,UniProtKB/TrEMBL:A1KAA2,NCBI_GP:CAL95758.1;Name=CAL95758.1;Note=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase (7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase) (HPPK) (6-hydroxymethyl-7%2C8-dihydropterin pyrophosphokinase) (PPPK). InterPro: 7%2C8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase Pfam:7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase%3B~High confidence in function and specificity;gbkey=CDS;gene=folK;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridinediphosphokinase;protein_id=CAL95758.1;transl_table=11
AM406670.1	EMBL	gene	3450614	3450997	.	+	.	ID=gene3193;Name=azo3142;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3142
AM406670.1	EMBL	CDS	3450614	3450997	.	+	0	ID=cds3139;Parent=gene3193;Dbxref=EnsemblGenomes-Gn:azo3142,EnsemblGenomes-Tr:CAL95759,InterPro:IPR007437,UniProtKB/TrEMBL:A1KAA3,NCBI_GP:CAL95759.1;Name=CAL95759.1;Note=Conserved hypothetical membrane protein. Homology to PA1577 of Pseudomonas aeruginosa of 69%25 (trembl|Q9I3E0). Has PF04342%2C IPR007437%3BProtein of unknown function%2C DUF486%3BThis family contains several proteins of uncharacterised function. No signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95759.1;transl_table=11
AM406670.1	EMBL	gene	3451005	3451646	.	+	.	ID=gene3194;Name=azo3143;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3143
AM406670.1	EMBL	CDS	3451005	3451646	.	+	0	ID=cds3140;Parent=gene3194;Dbxref=EnsemblGenomes-Gn:azo3143,EnsemblGenomes-Tr:CAL95760,GOA:A1KAA4,InterPro:IPR002624,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAA4,NCBI_GP:CAL95760.1;Name=CAL95760.1;Note=Deoxyguanosine kinase%2C probable (2.7.1.113) InterPro: Thymidylate kinase DTMP_kinase: thymidylate kinase%3B~Family membership;gbkey=CDS;product=putative deoxyguanosine kinase;protein_id=CAL95760.1;transl_table=11
AM406670.1	EMBL	gene	3451731	3452546	.	+	.	ID=gene3195;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=azo3144
AM406670.1	EMBL	CDS	3451731	3452546	.	+	0	ID=cds3141;Parent=gene3195;Dbxref=EnsemblGenomes-Gn:azo3144,EnsemblGenomes-Tr:CAL95761,GOA:A1KAA5,InterPro:IPR003700,InterPro:IPR015813,NCBI_GP:CAL95761.1;Name=CAL95761.1;Note=3-methyl-2-oxobutanoate hydroxymethyltransferase . InterPro: Ketopantoate hydroxymethyltransferase TIGRFAM: panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=panB;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=CAL95761.1;transl_table=11
AM406670.1	EMBL	gene	3452563	3453390	.	+	.	ID=gene3196;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=azo3145
AM406670.1	EMBL	CDS	3452563	3453390	.	+	0	ID=cds3142;Parent=gene3196;Dbxref=EnsemblGenomes-Gn:azo3145,EnsemblGenomes-Tr:CAL95762,GOA:A1KAA6,InterPro:IPR003721,InterPro:IPR014729,NCBI_GP:CAL95762.1;Name=CAL95762.1;Note=Pantothenate synthetase (Pantoate activating enzyme). catalytic activity: atp + (r)-pantoate + beta-alanine %3D amp + diphosphate + (r)-pantothenate. pathway: pantothenate biosynthesis%3B last step%2C by similarity. similarity: belongs to the pantothenate synthetase family. InterPro: Pantoate-beta-alanine ligase panC: pantoate--beta-alanine ligase%3B~High confidence in function and specificity;gbkey=CDS;gene=panC;product=Pantoate--beta-alanine ligase;protein_id=CAL95762.1;transl_table=11
AM406670.1	EMBL	gene	3453480	3453968	.	+	.	ID=gene3197;Name=azo3146;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3146
AM406670.1	EMBL	CDS	3453480	3453968	.	+	0	ID=cds3143;Parent=gene3197;Dbxref=EnsemblGenomes-Gn:azo3146,EnsemblGenomes-Tr:CAL95763,GOA:A1KAA7,InterPro:IPR000644,UniProtKB/TrEMBL:A1KAA7,NCBI_GP:CAL95763.1;Name=CAL95763.1;Note=Region start changed from 3453406 to 3453454 (-48 bases);gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95763.1;transl_table=11
AM406670.1	EMBL	gene	3454036	3456720	.	-	.	ID=gene3198;Name=pepN;gbkey=Gene;gene=pepN;gene_biotype=protein_coding;locus_tag=azo3147
AM406670.1	EMBL	CDS	3454036	3456720	.	-	0	ID=cds3144;Parent=gene3198;Dbxref=EnsemblGenomes-Gn:azo3147,EnsemblGenomes-Tr:CAL95764,GOA:A1KAA8,InterPro:IPR001930,InterPro:IPR012779,InterPro:IPR014782,InterPro:IPR024601,UniProtKB/TrEMBL:A1KAA8,NCBI_GP:CAL95764.1;Name=CAL95764.1;Note=Aminopeptidase catalyzes the removal of single amino acids from the amino terminus of small peptides and probable plays a role in their final digestion. Similar to trembl|Q8XXI8 (50%25) and to sprot|AMPN_ECOLI (47%25). Pfam (PF01433): Aminopeptidase N%2C APN (CD13)%3B~Specificity unclear;gbkey=CDS;gene=pepN;product=PepN protein;protein_id=CAL95764.1;transl_table=11
AM406670.1	EMBL	gene	3456803	3457705	.	-	.	ID=gene3199;Name=uspA;gbkey=Gene;gene=uspA;gene_biotype=protein_coding;locus_tag=azo3148
AM406670.1	EMBL	CDS	3456803	3457705	.	-	0	ID=cds3145;Parent=gene3199;Dbxref=EnsemblGenomes-Gn:azo3148,EnsemblGenomes-Tr:CAL95765,GOA:A1KAA9,InterPro:IPR006015,InterPro:IPR006016,InterPro:IPR014729,UniProtKB/TrEMBL:A1KAA9,NCBI_GP:CAL95765.1;Name=CAL95765.1;gbkey=CDS;gene=uspA;product=universal stress protein family;protein_id=CAL95765.1;transl_table=11
AM406670.1	EMBL	gene	3457702	3460452	.	-	.	ID=gene3200;Name=pma1;gbkey=Gene;gene=pma1;gene_biotype=protein_coding;locus_tag=azo3149
AM406670.1	EMBL	CDS	3457702	3460452	.	-	0	ID=cds3146;Parent=gene3200;Dbxref=EnsemblGenomes-Gn:azo3149,EnsemblGenomes-Tr:CAL95766,GOA:A1KAB0,InterPro:IPR001757,InterPro:IPR004014,InterPro:IPR006068,InterPro:IPR008250,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023298,InterPro:IPR023299,UniProtKB/TrEMBL:A1KAB0,NCBI_GP:CAL95766.1;Name=CAL95766.1;Note=Probable cation-transporting ATPase protein (EC 3.6.3.-).Could mediate calcium influx.Integral membrane protein.Belongs to the cation transport ATPases family (P-type ATPases). Subfamily IIA. 47%25 similarity to the cyanobacterium Synechocystis sp. PCC 6803%2C pma1. protein. SWISSPROT:ATA1_SYNY3.P37367 InterPro:IPR001757%3B ATPase_E1-E2.IPR006068%3B Cation_ATPase_C.IPR004014%3B Cation_ATPase_N.IPR008250%3B E1-E2_ATPase_reg.IPR000695%3B H_ATPase.IPR005834%3B Hydrolase. Pfam:PF00689: Cation_ATPase_C%3B1. PF00690: Cation_ATPase_N%3B1. PF00122: E1-E2_ATPase%3B1. PF00702: Hydrolase%3B 1. SignalP: present. InterPro:PF00702:Haloacid dehalogenase/epoxide hydrolase family.%3B~High confidence in function and specificity;gbkey=CDS;gene=pma1;product=putative cation-transporting P-type ATPase;protein_id=CAL95766.1;transl_table=11
AM406670.1	EMBL	gene	3460566	3461057	.	-	.	ID=gene3201;Name=azo3150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3150
AM406670.1	EMBL	CDS	3460566	3461057	.	-	0	ID=cds3147;Parent=gene3201;Dbxref=EnsemblGenomes-Gn:azo3150,EnsemblGenomes-Tr:CAL95767,InterPro:IPR010432,UniProtKB/TrEMBL:A1KAB1,NCBI_GP:CAL95767.1;Name=CAL95767.1;Note=Conserved hypothetical RDD family protein. Homology to ne0432 of N. europaea of 42%25 (trembl|Q82X63(SRS)). Pfam: (by Smart) RDD family This family of proteins contain three highly conserved amino acids: one arginine and two aspartates%2C hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands. signal peptide. 3 TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical RDD family protein;protein_id=CAL95767.1;transl_table=11
AM406670.1	EMBL	gene	3461066	3461431	.	-	.	ID=gene3202;Name=azo3151;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3151
AM406670.1	EMBL	CDS	3461066	3461431	.	-	0	ID=cds3148;Parent=gene3202;Dbxref=EnsemblGenomes-Gn:azo3151,EnsemblGenomes-Tr:CAL95768,InterPro:IPR021455,UniProtKB/TrEMBL:A1KAB2,NCBI_GP:CAL95768.1;Name=CAL95768.1;Note=Conserved hypothetical protein. Homology to ebA7126 of Azoarcus sp. EbN1 of 45%25 (gnl|keqq|eba:ebA7126(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95768.1;transl_table=11
AM406670.1	EMBL	gene	3461470	3461880	.	-	.	ID=gene3203;Name=azo3152;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3152
AM406670.1	EMBL	CDS	3461470	3461880	.	-	0	ID=cds3149;Parent=gene3203;Dbxref=EnsemblGenomes-Gn:azo3152,EnsemblGenomes-Tr:CAL95769,InterPro:IPR022064,UniProtKB/TrEMBL:A1KAB3,NCBI_GP:CAL95769.1;Name=CAL95769.1;Note=Conserved hypothetical protein. Homology to Daro03002551 of Dechloromonas aromatica of 31%25 (gi|41723955|ref|ZP_00150845.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95769.1;transl_table=11
AM406670.1	EMBL	gene	3461877	3462467	.	-	.	ID=gene3204;Name=azo3153;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3153
AM406670.1	EMBL	CDS	3461877	3462467	.	-	0	ID=cds3150;Parent=gene3204;Dbxref=EnsemblGenomes-Gn:azo3153,EnsemblGenomes-Tr:CAL95770,GOA:A1KAB4,InterPro:IPR011991,InterPro:IPR013249,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:A1KAB4,NCBI_GP:CAL95770.1;Name=CAL95770.1;Note=Probable RNA polymerase sigma factor%2C 62%25 Identity to TrEMBL%3BQ8XXN5%2C Q7P0I2. Has PF04542%2C Sigma-70 region 2%3BIPR007627%2C Sigma70_r2%3B Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix%2Cinteracts with the clamp domain of the largest polymerase subunit%2C beta prime. The aromatic residues of the recognition helix%2C found at the C-terminus of this domain are though to mediate strand separation%2C thereby allowing transcription initiation. Has PF04545%2C Sigma-70%2C region 4%3BIPR007630%2C Sigma70_r4%3B Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works%2C the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives. PF00196%2CBacterial regulatory proteins%2C luxR family%3B The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies which includes proteins with sizes ranging from 74 (gerE) to 901 amino acids (malT)%2C can be further subdivided into two classes on the basis of the mechanism by which they are activated. The first is a class of regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation%2C generally on an aspartate residue%2Cby a transmembrane kinase. The proteins that belong to this class include bvgA%2C comA%2C dctR%3B degU%2C evgA%2C fimZ%2CfixJ%2C gacA%2C glpR%2C narL%2C narP%2C nodW%2C rcsB and uhpA. The second is a class of regulators which is activated when bound to autoinducer molecules such as N-(3-oxohexanoyl)-L-homoserine lactone (OHHL. The proteins that belong to this class are carR%2C echR%2C esaR%2C expR%2C lasR%2C luxR%2C phzR%2C rhlR%2CtraR and yenR. The 'helix-turn-helix' DNA-binding motif of these proteins is located in the C-terminal section of the sequence.;gbkey=CDS;product=probable RNA polymerase sigma factor;protein_id=CAL95770.1;transl_table=11
AM406670.1	EMBL	gene	3462564	3464276	.	+	.	ID=gene3205;Name=ilvI;gbkey=Gene;gene=ilvI;gene_biotype=protein_coding;locus_tag=azo3154
AM406670.1	EMBL	CDS	3462564	3464276	.	+	0	ID=cds3151;Parent=gene3205;Dbxref=EnsemblGenomes-Gn:azo3154,EnsemblGenomes-Tr:CAL95771,GOA:A1KAB5,InterPro:IPR011766,InterPro:IPR012000,InterPro:IPR012001,InterPro:IPR012846,InterPro:IPR029035,InterPro:IPR029061,UniProtKB/TrEMBL:A1KAB5,NCBI_GP:CAL95771.1;Name=CAL95771.1;Note=Acetolactate synthase isozyme III large subunit (AHAS- III) (Acetohydroxy-acid synthase III large subunit) (ALS-III). InterPro: Acetolactate synthase large subunit biosynthetic type TIGRFAM: acolac_lg: acetolactate synthase large subunit%2C biosynthetic type%3B~High confidence in function and specificity;gbkey=CDS;gene=ilvI;product=acetolactate synthase;protein_id=CAL95771.1;transl_table=11
AM406670.1	EMBL	gene	3464331	3464822	.	+	.	ID=gene3206;Name=ilvH;gbkey=Gene;gene=ilvH;gene_biotype=protein_coding;locus_tag=azo3155
AM406670.1	EMBL	CDS	3464331	3464822	.	+	0	ID=cds3152;Parent=gene3206;Dbxref=EnsemblGenomes-Gn:azo3155,EnsemblGenomes-Tr:CAL95772,GOA:A1KAB6,InterPro:IPR002912,InterPro:IPR004789,InterPro:IPR019455,UniProtKB/TrEMBL:A1KAB6,NCBI_GP:CAL95772.1;Name=CAL95772.1;Note=Acetolactate synthase small subunit (AHAS) (Acetohydroxy-acid synthase small subunit) (ALS). InterPro: Acetolactate synthase small subunit TIGRFAM: acolac_sm: acetolactate synthase small subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=ilvH;product=acetolactate synthase;protein_id=CAL95772.1;transl_table=11
AM406670.1	EMBL	gene	3464912	3465928	.	+	.	ID=gene3207;Name=ilvC;gbkey=Gene;gene=ilvC;gene_biotype=protein_coding;locus_tag=azo3156
AM406670.1	EMBL	CDS	3464912	3465928	.	+	0	ID=cds3153;Parent=gene3207;Dbxref=EnsemblGenomes-Gn:azo3156,EnsemblGenomes-Tr:CAL95773,GOA:A1KAB7,InterPro:IPR000506,InterPro:IPR008927,InterPro:IPR013023,InterPro:IPR013116,InterPro:IPR013328,NCBI_GP:CAL95773.1;Name=CAL95773.1;Note=Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase). InterPro: Acetohydroxy acid isomeroreductase TIGRFAM: ilvC: ketol-acid reductoisomerase%3B~High confidence in function and specificity;gbkey=CDS;gene=ilvC;product=IlvC protein;protein_id=CAL95773.1;transl_table=11
AM406670.1	EMBL	gene	3466062	3466856	.	+	.	ID=gene3208;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=azo3157
AM406670.1	EMBL	CDS	3466062	3466856	.	+	0	ID=cds3154;Parent=gene3208;Dbxref=EnsemblGenomes-Gn:azo3157,EnsemblGenomes-Tr:CAL95774,GOA:A1KAB8,InterPro:IPR000462,InterPro:IPR004533,UniProtKB/TrEMBL:A1KAB8,NCBI_GP:CAL95774.1;Name=CAL95774.1;Note=This enzyme%2C CDP-diacylglycerol--serine O-phosphatidyltransferase%2C is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine %3D CMP + L-1-phosphatidylserine. Entry name:-SWISSPROT:PSS_HELPY identity:- 34%25 InterPro:-IPR000462%3B CDP-OH_P_trans. IPR004533%3B PssA. Pfam:- PF01066%3B CDP-OH_P_transf%3B 1. Number of predicted TMHs: 6 Prediction: Non-secretory protein Signal peptide probability: 0.047(YES)%3B~Family membership;gbkey=CDS;gene=pssA;product=putative CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=CAL95774.1;transl_table=11
AM406670.1	EMBL	gene	3466884	3467567	.	+	.	ID=gene3209;Name=colR;gbkey=Gene;gene=colR;gene_biotype=protein_coding;locus_tag=azo3158
AM406670.1	EMBL	CDS	3466884	3467567	.	+	0	ID=cds3155;Parent=gene3209;Dbxref=EnsemblGenomes-Gn:azo3158,EnsemblGenomes-Tr:CAL95775,GOA:A1KAB9,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:A1KAB9,NCBI_GP:CAL95775.1;Name=CAL95775.1;Note=Two-component system regulatory protein ColR%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=colR;product=two-component system regulatory protein;protein_id=CAL95775.1;transl_table=11
AM406670.1	EMBL	gene	3467557	3468843	.	+	.	ID=gene3210;Name=colS;gbkey=Gene;gene=colS;gene_biotype=protein_coding;locus_tag=azo3159
AM406670.1	EMBL	CDS	3467557	3468843	.	+	0	ID=cds3156;Parent=gene3210;Dbxref=EnsemblGenomes-Gn:azo3159,EnsemblGenomes-Tr:CAL95776,GOA:A1KAC0,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1KAC0,NCBI_GP:CAL95776.1;Name=CAL95776.1;Note=Two-component system sensor protein ColS%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=colS;product=two-component system sensor protein;protein_id=CAL95776.1;transl_table=11
AM406670.1	EMBL	gene	3468913	3469608	.	+	.	ID=gene3211;Name=azo3160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3160
AM406670.1	EMBL	CDS	3468913	3469608	.	+	0	ID=cds3157;Parent=gene3211;Dbxref=EnsemblGenomes-Gn:azo3160,EnsemblGenomes-Tr:CAL95777,GOA:A1KAC1,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:A1KAC1,NCBI_GP:CAL95777.1;Name=CAL95777.1;Note=Similar to TREMBL:P95473 (66%25 identity)%3B TREMBL:Q87X18 (66%25 identity)%3B TREMBL:Q87TV0 (61%25 identity).;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95777.1;transl_table=11
AM406670.1	EMBL	gene	3469605	3470279	.	+	.	ID=gene3212;Name=inaA;gbkey=Gene;gene=inaA;gene_biotype=protein_coding;locus_tag=azo3161
AM406670.1	EMBL	CDS	3469605	3470279	.	+	0	ID=cds3158;Parent=gene3212;Dbxref=EnsemblGenomes-Gn:azo3161,EnsemblGenomes-Tr:CAL95778,GOA:A1KAC2,InterPro:IPR010440,InterPro:IPR011009,InterPro:IPR027023,UniProtKB/TrEMBL:A1KAC2,NCBI_GP:CAL95778.1;Name=CAL95778.1;Note=Conserved hypothetical InaA protein. Homology to inaA of P. putida of 39%25 (gnl|keqq|ppu:PP0904(KEGG)). Pfam: Lipopolysaccharide kinase (Kdo/WaaP) family. These lipopolysaccharide kinases are related to protein kinases Pkinase. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. enterica. No signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=inaA;product=conserved hypothetical InaA protein;protein_id=CAL95778.1;transl_table=11
AM406670.1	EMBL	gene	3470652	3472187	.	+	.	ID=gene3213;Name=leuA1;gbkey=Gene;gene=leuA1;gene_biotype=protein_coding;locus_tag=azo3162
AM406670.1	EMBL	CDS	3470652	3472187	.	+	0	ID=cds3159;Parent=gene3213;Dbxref=EnsemblGenomes-Gn:azo3162,EnsemblGenomes-Tr:CAL95779,GOA:A1KAC3,InterPro:IPR000891,InterPro:IPR002034,InterPro:IPR005671,InterPro:IPR013709,InterPro:IPR013785,UniProtKB/TrEMBL:A1KAC3,NCBI_GP:CAL95779.1;Name=CAL95779.1;Note=2-isopropylmalate synthase%2C LeuA%2C is part of the leucine biosynthesis pathway.Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate). Similar to sprot|LEU1_NEIMB (70%25) and to sprot|LEU1_ECOLI (51%25). Pfam: HMGL-like%3B~High confidence in function and specificity;gbkey=CDS;gene=leuA1;product=2-isopropylmalate synthase;protein_id=CAL95779.1;transl_table=11
AM406670.1	EMBL	gene	3472263	3472613	.	-	.	ID=gene3214;Name=azo3163;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3163
AM406670.1	EMBL	CDS	3472263	3472613	.	-	0	ID=cds3160;Parent=gene3214;Dbxref=EnsemblGenomes-Gn:azo3163,EnsemblGenomes-Tr:CAL95780,InterPro:IPR018643,UniProtKB/TrEMBL:A1KAC4,NCBI_GP:CAL95780.1;Name=CAL95780.1;Note=Conserved hypothetical membrane protein. Homology to bb2106 of B. bronchispetica of 55%25 (trembl|Q7WKK0(SRS)). No domains predicted. signal peptide. 2 TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95780.1;transl_table=11
AM406670.1	EMBL	gene	3472610	3473209	.	-	.	ID=gene3215;Name=wrbA2;gbkey=Gene;gene=wrbA2;gene_biotype=protein_coding;locus_tag=azo3164
AM406670.1	EMBL	CDS	3472610	3473209	.	-	0	ID=cds3161;Parent=gene3215;Dbxref=EnsemblGenomes-Gn:azo3164,EnsemblGenomes-Tr:CAL95781,GOA:A1KAC5,InterPro:IPR008254,InterPro:IPR010089,InterPro:IPR029039,UniProtKB/TrEMBL:A1KAC5,NCBI_GP:CAL95781.1;Name=CAL95781.1;Note=Flavoprotein wrbA. TREMBL:Q8XZ48:63%25 identity%2C 73%25 similarity%3B Q7NZW0: 61%25%2C 72%25 WrbA%2C related to and slightly larger than flavodoxin. In Escherichia coli%2C this protein is produced during stationary phase%2C binds to the trp repressor%2C and makes trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Three copies are found in Sinorhizobium meliloti InterPro: IPR008254%3B Flav_nitox_synth. IPR001226%3B Flavodoxin. Pfam PF00258: flavodoxin Absence of signal peptide (Signal P predicted) and Transmembrane helices (TMHMM predicted). wrbA2 identical to wrbA1 and wrbA3 by 37%25 and 23%25 respectively.%3B~High confidence in function and specificity;gbkey=CDS;gene=wrbA2;product=probable tryptophan repressor binding protein (flavodoxin);protein_id=CAL95781.1;transl_table=11
AM406670.1	EMBL	gene	3473290	3474516	.	+	.	ID=gene3216;Name=azo3165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3165
AM406670.1	EMBL	CDS	3473290	3474516	.	+	0	ID=cds3162;Parent=gene3216;Dbxref=EnsemblGenomes-Gn:azo3165,EnsemblGenomes-Tr:CAL95782,GOA:A1KAC6,InterPro:IPR000944,InterPro:IPR017039,InterPro:IPR023679,NCBI_GP:CAL95782.1;Name=CAL95782.1;Note=Putative membrane protein(Ribonuclease BN)36%25 identity to TrEMBL%3B Q7NZV9.TrEMBL%3BQ8XZ47(27%25 identity). Has PF03631%2C Ribonuclease BN-like family%3BIPR004664%2CRNase_BN%3BThis family contains integral membrane proteins with 5 to 6 predicted transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation P32146. This family of proteins does not seem to contain any completely conserved polar residues that would be expected in a nuclease enzyme%2C suggesting that many members of this family may not have this catalytic activity.%3B~High confidence in function and specificity;gbkey=CDS;product=exoribonuclease II;protein_id=CAL95782.1;transl_table=11
AM406670.1	EMBL	gene	3474504	3476027	.	-	.	ID=gene3217;Name=azo3166;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3166
AM406670.1	EMBL	CDS	3474504	3476027	.	-	0	ID=cds3163;Parent=gene3217;Dbxref=EnsemblGenomes-Gn:azo3166,EnsemblGenomes-Tr:CAL95783,UniProtKB/TrEMBL:A1KAC7,NCBI_GP:CAL95783.1;Name=CAL95783.1;Note=Hypothetical Protein%2C20%25 identity to TrEMBL%3BQ9HUK7. Very Bad homology with the hits in the DB over entire length of protein. No substantial good hits available. No signal peptide or TMH reported present.;gbkey=CDS;product=Hypothetical Protein;protein_id=CAL95783.1;transl_table=11
AM406670.1	EMBL	gene	3476239	3476550	.	+	.	ID=gene3218;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=azo3167
AM406670.1	EMBL	CDS	3476239	3476550	.	+	0	ID=cds3164;Parent=gene3218;Dbxref=EnsemblGenomes-Gn:azo3167,EnsemblGenomes-Tr:CAL95784,GOA:A1KAC8,InterPro:IPR001787,InterPro:IPR018258,InterPro:IPR028909,NCBI_GP:CAL95784.1;Name=CAL95784.1;Note=50S ribosomal protein L21%2C 83%25 Identity to TrEMBL%3BQ7WQL6%2CQ7W1P0%2C Q8XVK8. Has PF00829%2C Ribosomal prokaryotic L21 protein%3BIPR001787 Ribosomal_L21p%3B Ribosomes are the particles that catalyze mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain%2C situated in the P site as peptidyl-tRNA%2C is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA%2C extended by one residue%2C is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites MEDLINE:11297922%2CMEDLINE:11290319. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.;gbkey=CDS;gene=rplU;product=50S ribosomal protein L21;protein_id=CAL95784.1;transl_table=11
AM406670.1	EMBL	gene	3476566	3476841	.	+	.	ID=gene3219;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=azo3168
AM406670.1	EMBL	CDS	3476566	3476841	.	+	0	ID=cds3165;Parent=gene3219;Dbxref=EnsemblGenomes-Gn:azo3168,EnsemblGenomes-Tr:CAL95785,GOA:A1KAC9,InterPro:IPR001684,InterPro:IPR018261,NCBI_GP:CAL95785.1;Name=CAL95785.1;Note=50S ribosomal protein L27.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpmA;product=50S ribosomal protein L27;protein_id=CAL95785.1;transl_table=11
AM406670.1	EMBL	gene	3476915	3478141	.	+	.	ID=gene3220;Name=azo3169;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3169
AM406670.1	EMBL	CDS	3476915	3478141	.	+	0	ID=cds3166;Parent=gene3220;Dbxref=EnsemblGenomes-Gn:azo3169,EnsemblGenomes-Tr:CAL95786,GOA:A1KAD0,InterPro:IPR006073,InterPro:IPR006074,InterPro:IPR006169,InterPro:IPR014100,InterPro:IPR027417,NCBI_GP:CAL95786.1;Name=CAL95786.1;Note=Hypothetical GTP-binding protein BU389. TREMBL:Q7NZS1: 67%25 identity%3B 79%25 similarity. InterPro: GTP1/OBG family InterPro:IPR006074%3B GTP1/OBG_dom. IPR006073: GTP1_OBG. IPR006169: GTP1_OBG_sub. Pfam:PF01018%3B GTP1_OBG%3B Pfam:arf:ADP-ribosylation factor family. TIGR00092: conserved hypothetical protein TIGRFAM bcpB: phosphonopyruvate decarboxylase-re%3B~Specificity unclear;gbkey=CDS;product=probable GTP-binding protein;protein_id=CAL95786.1;transl_table=11
AM406670.1	EMBL	gene	3478164	3479279	.	+	.	ID=gene3221;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;locus_tag=azo3170
AM406670.1	EMBL	CDS	3478164	3479279	.	+	0	ID=cds3167;Parent=gene3221;Dbxref=EnsemblGenomes-Gn:azo3170,EnsemblGenomes-Tr:CAL95787,GOA:A1KAD1,InterPro:IPR001048,InterPro:IPR001057,InterPro:IPR002478,InterPro:IPR005715,InterPro:IPR011529,InterPro:IPR015947,InterPro:IPR019797,NCBI_GP:CAL95787.1;Name=CAL95787.1;Note=Glutamate 5-kinase catalyses the first step in the biosynthesis of proline%2C the ATP-dependent phosphorylation of glutamate to glutamate 5-phosphate. It belongs to the larger family of aspartokinases. Similar to sprot|PROB_PSEAE (63%25)%2C to sprot|PROB_RALSO (63%25) and to sprot|PROB_ECOLI (39%25). Pfam (PF00696): Aspartokinase superfamily Pfam (PF01472): PUA domain InterPro (IPR001057): Glutamate 5-kinase%3B~High confidence in function and specificity;gbkey=CDS;gene=proB;product=prob protein;protein_id=CAL95787.1;transl_table=11
AM406670.1	EMBL	gene	3479458	3480543	.	+	.	ID=gene3222;Name=azo3171;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3171
AM406670.1	EMBL	CDS	3479458	3480543	.	+	0	ID=cds3168;Parent=gene3222;Dbxref=EnsemblGenomes-Gn:azo3171,EnsemblGenomes-Tr:CAL95788,InterPro:IPR014729,UniProtKB/TrEMBL:A1KAD2,NCBI_GP:CAL95788.1;Name=CAL95788.1;Note=Conserved hypothetical protein. Homology to ne2236 of N. europaea of 58%25 (trembl:Q82SS1). No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95788.1;transl_table=11
AM406670.1	EMBL	gene	3480540	3482300	.	+	.	ID=gene3223;Name=azo3172;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3172
AM406670.1	EMBL	CDS	3480540	3482300	.	+	0	ID=cds3169;Parent=gene3223;Dbxref=EnsemblGenomes-Gn:azo3172,EnsemblGenomes-Tr:CAL95789,GOA:A1KAD3,InterPro:IPR000873,InterPro:IPR020845,UniProtKB/TrEMBL:A1KAD3,NCBI_GP:CAL95789.1;Name=CAL95789.1;Note=It belongs to the ATP-dependent AMP-binding enzyme family. Entry name Q9X7Y5 Primary accession number Q9X7Y5 Identities %3D 193/609 (31%25) InterPro IPR000873%3B AMP-bind. Pfam PF00501%3B AMP-binding%3B 2 Signal peptide probability: 0.006 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;product=putative long chain fatty acid coA ligase;protein_id=CAL95789.1;transl_table=11
AM406670.1	EMBL	gene	3482297	3483427	.	+	.	ID=gene3224;Name=galE1;gbkey=Gene;gene=galE1;gene_biotype=protein_coding;locus_tag=azo3173
AM406670.1	EMBL	CDS	3482297	3483427	.	+	0	ID=cds3170;Parent=gene3224;Dbxref=EnsemblGenomes-Gn:azo3173,EnsemblGenomes-Tr:CAL95790,GOA:A1KAD4,InterPro:IPR013120,InterPro:IPR016040,UniProtKB/TrEMBL:A1KAD4,NCBI_GP:CAL95790.1;Name=CAL95790.1;Note=UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP- galactose 4-epimerase). PLAYS AN ESSENTIAL ROLE IN THE INCORPORATION OF GALACTOSE INTO MENINGOCOCCAL LIPOPOLYSACCHARIDE SURFACE MOLECULES WHICH ARE IMPORTANT FOR PATHOGENESIS. hemL: glutamate-1-semialdehyde-21-amin%3B~High confidence in function and specificity;gbkey=CDS;gene=galE1;product=UDP-glucose 4-epimerase;protein_id=CAL95790.1;transl_table=11
AM406670.1	EMBL	gene	3483441	3484316	.	-	.	ID=gene3225;Name=azo3174;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3174
AM406670.1	EMBL	CDS	3483441	3484316	.	-	0	ID=cds3171;Parent=gene3225;Dbxref=EnsemblGenomes-Gn:azo3174,EnsemblGenomes-Tr:CAL95791,GOA:A1KAD5,InterPro:IPR023576,InterPro:IPR025714,InterPro:IPR029063,UniProtKB/TrEMBL:A1KAD5,NCBI_GP:CAL95791.1;Name=CAL95791.1;Note=InterPro (IPR000051): SAM (and some other nucleotide) binding motif. InterPro (IPR001601): Generic methyltransferase. Pfam (PF01209): ubiE/COQ5 methyltransferase family.%3B~Function unclear;gbkey=CDS;product=putative methyltransferase;protein_id=CAL95791.1;transl_table=11
AM406670.1	EMBL	gene	3484397	3485239	.	-	.	ID=gene3226;Name=azo3175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3175
AM406670.1	EMBL	CDS	3484397	3485239	.	-	0	ID=cds3172;Parent=gene3226;Dbxref=EnsemblGenomes-Gn:azo3175,EnsemblGenomes-Tr:CAL95792,InterPro:IPR013424,UniProtKB/TrEMBL:A1KAD6,NCBI_GP:CAL95792.1;Name=CAL95792.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. Signal Peptide present. No TMH present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95792.1;transl_table=11
AM406670.1	EMBL	gene	3485581	3486774	.	+	.	ID=gene3227;Name=azo3176;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3176
AM406670.1	EMBL	CDS	3485581	3486774	.	+	0	ID=cds3173;Parent=gene3227;Dbxref=EnsemblGenomes-Gn:azo3176,EnsemblGenomes-Tr:CAL95793,GOA:A1KAD7,InterPro:IPR003838,InterPro:IPR025857,UniProtKB/TrEMBL:A1KAD7,NCBI_GP:CAL95793.1;Name=CAL95793.1;Note=Region start changed from 3485680 to 3485581 (99 bases);gbkey=CDS;product=permease component of an ABC-transporter system;protein_id=CAL95793.1;transl_table=11
AM406670.1	EMBL	gene	3486774	3487988	.	+	.	ID=gene3228;Name=lolE3;gbkey=Gene;gene=lolE3;gene_biotype=protein_coding;locus_tag=azo3177
AM406670.1	EMBL	CDS	3486774	3487988	.	+	0	ID=cds3174;Parent=gene3228;Dbxref=EnsemblGenomes-Gn:azo3177,EnsemblGenomes-Tr:CAL95794,GOA:A1KAD8,InterPro:IPR003838,InterPro:IPR025857,UniProtKB/TrEMBL:A1KAD8,NCBI_GP:CAL95794.1;Name=CAL95794.1;Note=part of a lipoprotein translocation system (translocates lipoproteins from the inner membrane to periplasmic chaperone%2C LolA%2C which transfers the lipoproteins to an outer membrane receptor%2C LolB%2C which anchors the lipoprotein to the outer membrane of the Gram-negative bacterial cell envelope)%3B~Specificity unclear;gbkey=CDS;gene=lolE3;product=permease component of an ABC transporter system;protein_id=CAL95794.1;transl_table=11
AM406670.1	EMBL	gene	3488167	3488946	.	+	.	ID=gene3229;Name=azo3178;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3178
AM406670.1	EMBL	CDS	3488167	3488946	.	+	0	ID=cds3175;Parent=gene3229;Dbxref=EnsemblGenomes-Gn:azo3178,EnsemblGenomes-Tr:CAL95795,InterPro:IPR016181,InterPro:IPR022484,UniProtKB/TrEMBL:A1KAD9,NCBI_GP:CAL95795.1;Name=CAL95795.1;Note=Similar to TREMBL:Q82SR1 (47%25 identity).;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95795.1;transl_table=11
AM406670.1	EMBL	gene	3489012	3490904	.	-	.	ID=gene3230;Name=prpE;gbkey=Gene;gene=prpE;gene_biotype=protein_coding;locus_tag=azo3179
AM406670.1	EMBL	CDS	3489012	3490904	.	-	0	ID=cds3176;Parent=gene3230;Dbxref=EnsemblGenomes-Gn:azo3179,EnsemblGenomes-Tr:CAL95796,GOA:A1KAE0,InterPro:IPR000873,InterPro:IPR012694,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:A1KAE0,NCBI_GP:CAL95796.1;Name=CAL95796.1;Note=Catalysis the synthesis of propionyl-CoA from propionate and CoA. Also converts acetate to acetyl-CoA but with a lower specific activity (By similarity). Catalysis of the reaction:- ATP + propanoate + CoA %3D AMP + diphosphate + propanoyl-CoA Entry name SWISSPROT:PRPE_SALTY InterPro IPR000873%3B AMP-bind. Pfam PF00501%3B AMP-binding%3B 1. Identities %3D 372/627 (59%25) Number of predicted TMHs: 1%3B~High confidence in function and specificity;gbkey=CDS;gene=prpE;product=probable propionyl-CoA synthetase;protein_id=CAL95796.1;transl_table=11
AM406670.1	EMBL	gene	3491000	3492196	.	-	.	ID=gene3231;Name=azo3180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3180
AM406670.1	EMBL	CDS	3491000	3492196	.	-	0	ID=cds3177;Parent=gene3231;Dbxref=EnsemblGenomes-Gn:azo3180,EnsemblGenomes-Tr:CAL95797,GOA:A1KAE1,InterPro:IPR000160,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR029787,UniProtKB/TrEMBL:A1KAE1,NCBI_GP:CAL95797.1;Name=CAL95797.1;Note=Putative response regulator protein%2C%3B~Family membership;gbkey=CDS;product=putative response regulator protein;protein_id=CAL95797.1;transl_table=11
AM406670.1	EMBL	gene	3492225	3493199	.	-	.	ID=gene3232;Name=azo3181;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3181
AM406670.1	EMBL	CDS	3492225	3493199	.	-	0	ID=cds3178;Parent=gene3232;Dbxref=EnsemblGenomes-Gn:azo3181,EnsemblGenomes-Tr:CAL95798,GOA:A1KAE2,InterPro:IPR002085,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR014188,InterPro:IPR016040,UniProtKB/TrEMBL:A1KAE2,NCBI_GP:CAL95798.1;Name=CAL95798.1;Note=Region start changed from 3493365 to 3493173 (-192 bases);gbkey=CDS;product=probable dehydrogenase protein;protein_id=CAL95798.1;transl_table=11
AM406670.1	EMBL	gene	3493390	3494259	.	+	.	ID=gene3233;Name=azo3182;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3182
AM406670.1	EMBL	CDS	3493390	3494259	.	+	0	ID=cds3179;Parent=gene3233;Dbxref=EnsemblGenomes-Gn:azo3182,EnsemblGenomes-Tr:CAL95799,InterPro:IPR013976,UniProtKB/TrEMBL:A1KAE3,NCBI_GP:CAL95799.1;Name=CAL95799.1;Note=Conserved hypothetical protein. Homology to Daro03003801 of Dechloromonas aromatica of 44%25 (gi|41722610|ref|ZP_00149605.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95799.1;transl_table=11
AM406670.1	EMBL	gene	3494332	3494907	.	+	.	ID=gene3234;Name=lemA2;gbkey=Gene;gene=lemA2;gene_biotype=protein_coding;locus_tag=azo3183
AM406670.1	EMBL	CDS	3494332	3494907	.	+	0	ID=cds3180;Parent=gene3234;Dbxref=EnsemblGenomes-Gn:azo3183,EnsemblGenomes-Tr:CAL95800,InterPro:IPR007156,InterPro:IPR023353,UniProtKB/TrEMBL:A1KAE4,NCBI_GP:CAL95800.1;Name=CAL95800.1;Note=Putative cytoplasmic membrane protein%2C lemA%2C 41%25 identity(63%25 similarity) to TrEMBL%3BQ9FA50.TrEMBL%3BQ7CNK7(37%25 identity). Has PF04011%2CLemA family%3BIPR007156%3BThe members of this family are related to the LemA protein P71452. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.%3B~Conserved hypothetical protein;gbkey=CDS;gene=lemA2;product=conserved hypothetical lemA family protein;protein_id=CAL95800.1;transl_table=11
AM406670.1	EMBL	gene	3494927	3495829	.	+	.	ID=gene3235;Name=azo3184;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3184
AM406670.1	EMBL	CDS	3494927	3495829	.	+	0	ID=cds3181;Parent=gene3235;Dbxref=EnsemblGenomes-Gn:azo3184,EnsemblGenomes-Tr:CAL95801,GOA:A1KAE5,InterPro:IPR002048,InterPro:IPR018247,UniProtKB/TrEMBL:A1KAE5,NCBI_GP:CAL95801.1;Name=CAL95801.1;Note=Conserved hypothetical membrane protein. Homology to NE0281 of Nitrosomonas europaea of 34%25 (trembl|Q82XI9(SRS)). No domains predicted. no signal peptide. 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95801.1;transl_table=11
AM406670.1	EMBL	gene	3495834	3497804	.	-	.	ID=gene3236;Name=abcZ;gbkey=Gene;gene=abcZ;gene_biotype=protein_coding;locus_tag=azo3185
AM406670.1	EMBL	CDS	3495834	3497804	.	-	0	ID=cds3182;Parent=gene3236;Dbxref=EnsemblGenomes-Gn:azo3185,EnsemblGenomes-Tr:CAL95802,GOA:A1KAE6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAE6,NCBI_GP:CAL95802.1;Name=CAL95802.1;Note=ABC transporter ATP-binding protein uup-1. InterPro: AAA ATPase superfamily Presence of SMC domain at N-terminal. Occurence of HypB/UreG nucleotide binding domain. FERM and yrdC domains are also present. Presence of uncharacterized P-loop hydralase domain. Presence of signal peptide and transmembrane helices. 61%25 identity and 76%25 similarity to Chromobacterium ABC transporter.%3B~Family membership;gbkey=CDS;gene=abcZ;product=probable ABC transporter ATP-binding protein;protein_id=CAL95802.1;transl_table=11
AM406670.1	EMBL	gene	3497849	3499915	.	+	.	ID=gene3237;Name=azo3186;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3186
AM406670.1	EMBL	CDS	3497849	3499915	.	+	0	ID=cds3183;Parent=gene3237;Dbxref=EnsemblGenomes-Gn:azo3186,EnsemblGenomes-Tr:CAL95803,InterPro:IPR011385,UniProtKB/TrEMBL:A1KAE7,NCBI_GP:CAL95803.1;Name=CAL95803.1;Note=Probable site-specific recombinase.%3B~Function unclear%3B~ORF7;gbkey=CDS;product=hypothetical protein;protein_id=CAL95803.1;transl_table=11
AM406670.1	EMBL	gene	3499971	3500045	.	+	.	ID=gene3238;Name=tRNA-Arg;gbkey=Gene;gene=tRNA-Arg;gene_biotype=tRNA;locus_tag=azo_tRNA_0048
AM406670.1	EMBL	tRNA	3499971	3500045	.	+	.	ID=rna54;Parent=gene3238;anticodon=(pos:3500004..3500006);gbkey=tRNA;gene=tRNA-Arg;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Arg
AM406670.1	EMBL	exon	3499971	3500045	.	+	.	ID=id55;Parent=rna54;anticodon=(pos:3500004..3500006);gbkey=tRNA;gene=tRNA-Arg;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Arg
AM406670.1	EMBL	gene	3500067	3500861	.	-	.	ID=gene3239;Name=azo3187;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3187
AM406670.1	EMBL	CDS	3500067	3500861	.	-	0	ID=cds3184;Parent=gene3239;Dbxref=EnsemblGenomes-Gn:azo3187,EnsemblGenomes-Tr:CAL95804,GOA:A1KAE8,InterPro:IPR009003,UniProtKB/TrEMBL:A1KAE8,NCBI_GP:CAL95804.1;Name=CAL95804.1;Note=Conserved hypothetical serine protease. Homology to mucD of N. europaea of 50%25 (trembl|Q82XA8). InterPro: Serine proteases trypsin family (IPR001254)%3B Chymotrypsin serin protease family (S1) (IPR001314). Pfam: Trypsin. signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical serine protease;protein_id=CAL95804.1;transl_table=11
AM406670.1	EMBL	gene	3500858	3501787	.	-	.	ID=gene3240;Name=azo3188;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3188
AM406670.1	EMBL	CDS	3500858	3501787	.	-	0	ID=cds3185;Parent=gene3240;Dbxref=EnsemblGenomes-Gn:azo3188,EnsemblGenomes-Tr:CAL95805,GOA:A1KAE9,InterPro:IPR000189,InterPro:IPR006311,InterPro:IPR006597,InterPro:IPR008258,InterPro:IPR011990,InterPro:IPR023346,UniProtKB/TrEMBL:A1KAE9,NCBI_GP:CAL95805.1;Name=CAL95805.1;Note=Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) (Slt70). Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division (By similarity). InterPro: SLT domain%3B~Family membership;gbkey=CDS;product=soluble lytic murein transglycosylase precursor;protein_id=CAL95805.1;transl_table=11
AM406670.1	EMBL	gene	3501801	3503081	.	-	.	ID=gene3241;Name=azo3189;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3189
AM406670.1	EMBL	CDS	3501801	3503081	.	-	0	ID=cds3186;Parent=gene3241;Dbxref=EnsemblGenomes-Gn:azo3189,EnsemblGenomes-Tr:CAL95806,GOA:A1KAF0,InterPro:IPR001732,InterPro:IPR008927,InterPro:IPR014026,InterPro:IPR014027,InterPro:IPR016040,InterPro:IPR017476,InterPro:IPR028359,UniProtKB/TrEMBL:A1KAF0,NCBI_GP:CAL95806.1;Name=CAL95806.1;Note=CapL protein. Required for the biosynthesis of type 1 capsular polysaccharide. InterPro: UDP-glucose/GDP-mannose dehydrogenase family gutA: pts system glucitol/sorbitol-s%3B~Specificity unclear;gbkey=CDS;product=NDPsugar dehydrogenase;protein_id=CAL95806.1;transl_table=11
AM406670.1	EMBL	gene	3503118	3505919	.	-	.	ID=gene3242;Name=azo3190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3190
AM406670.1	EMBL	CDS	3503118	3505919	.	-	0	ID=cds3187;Parent=gene3242;Dbxref=EnsemblGenomes-Gn:azo3190,EnsemblGenomes-Tr:CAL95807,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR013105,InterPro:IPR014266,InterPro:IPR019734,UniProtKB/TrEMBL:A1KAF1,NCBI_GP:CAL95807.1;Name=CAL95807.1;Note=In part%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95807.1;transl_table=11
AM406670.1	EMBL	gene	3505919	3507280	.	-	.	ID=gene3243;Name=atoC;gbkey=Gene;gene=atoC;gene_biotype=protein_coding;locus_tag=azo3191
AM406670.1	EMBL	CDS	3505919	3507280	.	-	0	ID=cds3188;Parent=gene3243;Dbxref=EnsemblGenomes-Gn:azo3191,EnsemblGenomes-Tr:CAL95808,GOA:A1KAF2,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR014264,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAF2,NCBI_GP:CAL95808.1;Name=CAL95808.1;Note=Probable acetoacetate metabolism regulatory protein%2C%3B~Specificity unclear;gbkey=CDS;gene=atoC;product=probable acetoacetate metabolism regulatory protein;protein_id=CAL95808.1;transl_table=11
AM406670.1	EMBL	gene	3507270	3509348	.	-	.	ID=gene3244;Name=azo3192;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3192
AM406670.1	EMBL	CDS	3507270	3509348	.	-	0	ID=cds3189;Parent=gene3244;Dbxref=EnsemblGenomes-Gn:azo3192,EnsemblGenomes-Tr:CAL95809,GOA:A1KAF3,InterPro:IPR003018,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR014265,InterPro:IPR029016,UniProtKB/TrEMBL:A1KAF3,NCBI_GP:CAL95809.1;Name=CAL95809.1;Note=Putative two component sensor histidine kinase%2C%3B~Family membership;gbkey=CDS;product=putative two component sensor histidine kinase;protein_id=CAL95809.1;transl_table=11
AM406670.1	EMBL	gene	3509439	3510821	.	-	.	ID=gene3245;Name=azo3193;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3193
AM406670.1	EMBL	CDS	3509439	3510821	.	-	0	ID=cds3190;Parent=gene3245;Dbxref=EnsemblGenomes-Gn:azo3193,EnsemblGenomes-Tr:CAL95810,GOA:A1KAF4,InterPro:IPR003362,InterPro:IPR017464,InterPro:IPR017475,UniProtKB/TrEMBL:A1KAF4,NCBI_GP:CAL95810.1;Name=CAL95810.1;Note=Might transfer a sugar moiety directly to a lipd acceptor. Putative colanic biosynthesis UDP-glucose lipid carrier transferase. InterPro: Bacterial sugar transferase%3B~Family membership;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95810.1;transl_table=11
AM406670.1	EMBL	gene	3511072	3511518	.	+	.	ID=gene3246;Name=azo3194;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3194
AM406670.1	EMBL	CDS	3511072	3511518	.	+	0	ID=cds3191;Parent=gene3246;Dbxref=EnsemblGenomes-Gn:azo3194,EnsemblGenomes-Tr:CAL95811,GOA:A1KAF5,InterPro:IPR002539,InterPro:IPR003965,InterPro:IPR029069,UniProtKB/TrEMBL:A1KAF5,NCBI_GP:CAL95811.1;Name=CAL95811.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95811.1;transl_table=11
AM406670.1	EMBL	gene	3511974	3514860	.	-	.	ID=gene3247;Name=azo_rrn4;gbkey=Gene;gene_biotype=rRNA;locus_tag=azo_rrn4
AM406670.1	EMBL	rRNA	3511974	3514860	.	-	.	ID=rna55;Parent=gene3247;gbkey=rRNA
AM406670.1	EMBL	exon	3511974	3514860	.	-	.	ID=id56;Parent=rna55;gbkey=rRNA
AM406670.1	EMBL	gene	3515151	3515226	.	-	.	ID=gene3248;Name=tRNA-Ala;gbkey=Gene;gene=tRNA-Ala;gene_biotype=tRNA;locus_tag=azo_tRNA_0049
AM406670.1	EMBL	tRNA	3515151	3515226	.	-	.	ID=rna56;Parent=gene3248;anticodon=(pos:complement(3515191..3515193));gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	exon	3515151	3515226	.	-	.	ID=id57;Parent=rna56;anticodon=(pos:complement(3515191..3515193));gbkey=tRNA;gene=tRNA-Ala;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ala
AM406670.1	EMBL	gene	3515254	3515330	.	-	.	ID=gene3249;Name=tRNA-Ile;gbkey=Gene;gene=tRNA-Ile;gene_biotype=tRNA;locus_tag=azo_tRNA_0050
AM406670.1	EMBL	tRNA	3515254	3515330	.	-	.	ID=rna57;Parent=gene3249;anticodon=(pos:complement(3515294..3515296));gbkey=tRNA;gene=tRNA-Ile;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ile
AM406670.1	EMBL	exon	3515254	3515330	.	-	.	ID=id58;Parent=rna57;anticodon=(pos:complement(3515294..3515296));gbkey=tRNA;gene=tRNA-Ile;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Ile
AM406670.1	EMBL	gene	3515378	3516911	.	-	.	ID=gene3250;Name=azo_rrn3;gbkey=Gene;gene_biotype=rRNA;locus_tag=azo_rrn3
AM406670.1	EMBL	rRNA	3515378	3516911	.	-	.	ID=rna58;Parent=gene3250;gbkey=rRNA
AM406670.1	EMBL	exon	3515378	3516911	.	-	.	ID=id59;Parent=rna58;gbkey=rRNA
AM406670.1	EMBL	gene	3517200	3518531	.	-	.	ID=gene3251;Name=azo3195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3195
AM406670.1	EMBL	CDS	3517200	3518531	.	-	0	ID=cds3192;Parent=gene3251;Dbxref=EnsemblGenomes-Gn:azo3195,EnsemblGenomes-Tr:CAL95812,UniProtKB/TrEMBL:A1KAF6,NCBI_GP:CAL95812.1;Name=CAL95812.1;Note=Hypothetical protein. No known Domains/Features/Signal Peptide or TMH present. Weak Homology with hits in the database.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL95812.1;transl_table=11
AM406670.1	EMBL	gene	3518714	3519508	.	+	.	ID=gene3252;Name=thyA;gbkey=Gene;gene=thyA;gene_biotype=protein_coding;locus_tag=azo3197
AM406670.1	EMBL	CDS	3518714	3519508	.	+	0	ID=cds3193;Parent=gene3252;Dbxref=EnsemblGenomes-Gn:azo3197,EnsemblGenomes-Tr:CAL95813,GOA:A1KAF7,InterPro:IPR000398,InterPro:IPR020940,InterPro:IPR023451,NCBI_GP:CAL95813.1;Name=CAL95813.1;Note=Thymidylate synthase [thyA]%2C 79%25 identity to TrEMBL%3BQ5P233. Has PF00303%2C Thymidylate synthase.Thymidylate synthase catalyzes the reductive methylation of dUMP to dTMP with concomitant conversion of 5%2C10-methylenetetrahydrofolate to dihydrofolate. IPR000398%2CThymidylat_synth%3B~High confidence in function and specificity;gbkey=CDS;gene=thyA;product=thymidylate synthase;protein_id=CAL95813.1;transl_table=11
AM406670.1	EMBL	gene	3519505	3519999	.	+	.	ID=gene3253;Name=folA;gbkey=Gene;gene=folA;gene_biotype=protein_coding;locus_tag=azo3198
AM406670.1	EMBL	CDS	3519505	3519999	.	+	0	ID=cds3194;Parent=gene3253;Dbxref=EnsemblGenomes-Gn:azo3198,EnsemblGenomes-Tr:CAL95814,GOA:A1KAF8,InterPro:IPR001796,InterPro:IPR012259,InterPro:IPR017925,InterPro:IPR024072,UniProtKB/TrEMBL:A1KAF8,NCBI_GP:CAL95814.1;Name=CAL95814.1;Note=Dihydrofolate reductase. catalytic activity: 5%2C6%2C7%2C8-tetrahydrofolate + nadp(+) %3D 7%2C8- dihydrofolate + nadph. pathway: essential step for de novo glycine and purine synthesis%2C dna precursor synthesis%2C and for the conversion of dump to dtmp. Pfam: Dihydrofolate reductase%3B~High confidence in function and specificity;gbkey=CDS;gene=folA;product=FolA protein;protein_id=CAL95814.1;transl_table=11
AM406670.1	EMBL	gene	3520046	3522289	.	-	.	ID=gene3254;Name=adiA;gbkey=Gene;gene=adiA;gene_biotype=protein_coding;locus_tag=azo3199
AM406670.1	EMBL	CDS	3520046	3522289	.	-	0	ID=cds3195;Parent=gene3254;Dbxref=EnsemblGenomes-Gn:azo3199,EnsemblGenomes-Tr:CAL95815,GOA:A1KAF9,InterPro:IPR000310,InterPro:IPR005308,InterPro:IPR008286,InterPro:IPR011193,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1KAF9,NCBI_GP:CAL95815.1;Name=CAL95815.1;Note=Putative orn/arg/lys decarboxylase. Homology to adiA of E. coli of 37%25 (sprot|ADIA_ECOLI). This family is composed of ornithine decarboxylases (ODC)%2C arginine decarboxylases (ADC) and lysine decarboxylases (LDC)%2C and belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase domain superfamily (fold I). These enzymes catalyse the decarboxylation of ornithine%2Carginine%2C or lysine%2C respectively using PLP as a co-factor. Pfam: Orn/Lys/Arg decarboxylase no signal peptide no TMHs%3B~Specificity unclear;gbkey=CDS;gene=adiA;product=putative orn/arg/lys decarboxylase;protein_id=CAL95815.1;transl_table=11
AM406670.1	EMBL	gene	3522456	3523022	.	-	.	ID=gene3255;Name=dcd;gbkey=Gene;gene=dcd;gene_biotype=protein_coding;locus_tag=azo3200
AM406670.1	EMBL	CDS	3522456	3523022	.	-	0	ID=cds3196;Parent=gene3255;Dbxref=EnsemblGenomes-Gn:azo3200,EnsemblGenomes-Tr:CAL95816,GOA:A1KAG0,InterPro:IPR008180,InterPro:IPR011962,InterPro:IPR029054,NCBI_GP:CAL95816.1;Name=CAL95816.1;Note=dCTP deaminase (Deoxycytidine triphosphate deaminase) InterPro: dUTPase%3B~High confidence in function and specificity;gbkey=CDS;gene=dcd;product=dCTP deaminase;protein_id=CAL95816.1;transl_table=11
AM406670.1	EMBL	gene	3523125	3524216	.	-	.	ID=gene3256;Name=azo3201;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3201
AM406670.1	EMBL	CDS	3523125	3524216	.	-	0	ID=cds3197;Parent=gene3256;Dbxref=EnsemblGenomes-Gn:azo3201,EnsemblGenomes-Tr:CAL95817,GOA:A1KAG1,InterPro:IPR000808,InterPro:IPR002744,InterPro:IPR019591,InterPro:IPR025669,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAG1,NCBI_GP:CAL95817.1;Name=CAL95817.1;Note=Mrp protein homolog InterPro: Domain of unknown function DUF59 desulf_FeS4: desulfoferrodoxin FeS4 iron%3B~Function unclear;gbkey=CDS;product=putative iron sulfur binding protein;protein_id=CAL95817.1;transl_table=11
AM406670.1	EMBL	gene	3524441	3525022	.	+	.	ID=gene3257;Name=azo3202;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3202
AM406670.1	EMBL	CDS	3524441	3525022	.	+	0	ID=cds3198;Parent=gene3257;Dbxref=EnsemblGenomes-Gn:azo3202,EnsemblGenomes-Tr:CAL95818,GOA:A1KAG2,InterPro:IPR006664,InterPro:IPR006665,UniProtKB/TrEMBL:A1KAG2,NCBI_GP:CAL95818.1;Name=CAL95818.1;Note=Belongs to the ompa family. InterPro: Bacterial outer membrane protein%3B~Function unclear;gbkey=CDS;product=lipoprotein attached to the membrane by a lipid anchor;protein_id=CAL95818.1;transl_table=11
AM406670.1	EMBL	gene	3525107	3527278	.	+	.	ID=gene3258;Name=azo3203;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3203
AM406670.1	EMBL	CDS	3525107	3527278	.	+	0	ID=cds3199;Parent=gene3258;Dbxref=EnsemblGenomes-Gn:azo3203,EnsemblGenomes-Tr:CAL95819,GOA:A1KAG3,InterPro:IPR001412,InterPro:IPR002547,InterPro:IPR004495,InterPro:IPR009080,InterPro:IPR012340,InterPro:IPR014729,InterPro:IPR014758,InterPro:IPR015413,InterPro:IPR023458,InterPro:IPR029038,NCBI_GP:CAL95819.1;Name=CAL95819.1;Note=Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA ligase) (MetRS).%3B~High confidence in function and specificity;gbkey=CDS;product=MetG protein;protein_id=CAL95819.1;transl_table=11
AM406670.1	EMBL	gene	3527498	3529189	.	+	.	ID=gene3259;Name=sulP2;gbkey=Gene;gene=sulP2;gene_biotype=protein_coding;locus_tag=azo3204
AM406670.1	EMBL	CDS	3527498	3529189	.	+	0	ID=cds3200;Parent=gene3259;Dbxref=EnsemblGenomes-Gn:azo3204,EnsemblGenomes-Tr:CAL95820,GOA:A1KAG4,InterPro:IPR002645,InterPro:IPR011547,UniProtKB/TrEMBL:A1KAG4,NCBI_GP:CAL95820.1;Name=CAL95820.1;Note=Sulfate permease%2C SulP. Permease member of the MFS superfamily%2C involved in the transport of sulfate. Putative sulfate transporter ychM. InterPro: IPR002645%3B STAS. IPR001902%3B Sulph_transpt. Pfam: PF01740%3B STAS%3B 1. PF00916%3B Sulfate_transp%3B 1. SignalP: present.%3B~High confidence in function and specificity;gbkey=CDS;gene=sulP2;product=putative sulfate transporter;protein_id=CAL95820.1;transl_table=11
AM406670.1	EMBL	gene	3529182	3529478	.	+	.	ID=gene3260;Name=azo3205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3205
AM406670.1	EMBL	CDS	3529182	3529478	.	+	0	ID=cds3201;Parent=gene3260;Dbxref=EnsemblGenomes-Gn:azo3205,EnsemblGenomes-Tr:CAL95821,GOA:A1KAG5,InterPro:IPR001792,InterPro:IPR017968,InterPro:IPR020456,NCBI_GP:CAL95821.1;Name=CAL95821.1;Note=Conserved hypothetical acylphosphatase. Homology to pf0283 of P. furiosus of 56%25 (trembl|Q8U414). Acylphosphatase specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates%2C its substrates including 1%2C3-diphosphoglycerate and carbamyl phosphate. Although its physiological role is as yet unknown it may%2C however%2C play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis. InterPro: Acylphosphatase (IPR001792). Pfam: Acylphosphatase. no signal peptide. no TMHs.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical acylphosphatase;protein_id=CAL95821.1;transl_table=11
AM406670.1	EMBL	gene	3529488	3531545	.	-	.	ID=gene3261;Name=azo3206;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3206
AM406670.1	EMBL	CDS	3529488	3531545	.	-	0	ID=cds3202;Parent=gene3261;Dbxref=EnsemblGenomes-Gn:azo3206,EnsemblGenomes-Tr:CAL95822,GOA:A1KAG6,InterPro:IPR000917,InterPro:IPR012160,InterPro:IPR017849,InterPro:IPR017850,UniProtKB/TrEMBL:A1KAG6,NCBI_GP:CAL95822.1;Name=CAL95822.1;gbkey=CDS;product=membrane protein%2C alkaline phosphatase superfamily;protein_id=CAL95822.1;transl_table=11
AM406670.1	EMBL	gene	3531569	3532429	.	-	.	ID=gene3262;Name=azo3207;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3207
AM406670.1	EMBL	CDS	3531569	3532429	.	-	0	ID=cds3203;Parent=gene3262;Dbxref=EnsemblGenomes-Gn:azo3207,EnsemblGenomes-Tr:CAL95823,GOA:A1KAG7,InterPro:IPR006311,InterPro:IPR011042,InterPro:IPR018119,UniProtKB/TrEMBL:A1KAG7,NCBI_GP:CAL95823.1;Name=CAL95823.1;Note=Conserved hypothetical secreted protein. Homology to PA1688 of Pseudomonas aeruginosa of 54%25 (trembl|Q9X6R1(SRS)). No domains predicted. Signal p reporting signal peptide present. NO TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95823.1;transl_table=11
AM406670.1	EMBL	gene	3532537	3536055	.	-	.	ID=gene3263;Name=dnaE1;gbkey=Gene;gene=dnaE1;gene_biotype=protein_coding;locus_tag=azo3208
AM406670.1	EMBL	CDS	3532537	3536055	.	-	0	ID=cds3204;Parent=gene3263;Dbxref=EnsemblGenomes-Gn:azo3208,EnsemblGenomes-Tr:CAL95824,GOA:A1KAG8,InterPro:IPR003141,InterPro:IPR004013,InterPro:IPR004365,InterPro:IPR004805,InterPro:IPR011708,InterPro:IPR012340,InterPro:IPR016195,InterPro:IPR029460,UniProtKB/TrEMBL:A1KAG8,NCBI_GP:CAL95824.1;Name=CAL95824.1;Note=DNA polymerase III alpha subunit. DNA POLYMERASE III IS A COMPLEX MULTICHAIN ENZYME RESPONSIBLE FOR MOST OF THE REPLICATIVE SYNTHESIS IN BACTERIA. THIS DNA POLYMERASE ALSO EXHIBITS 3 TO 5 EXONUCLEASE ACTIVITY. THE ALPHA CHAIN IS THE DNA POLYMERASE (BY SIMILARITY). InterPro: DNA polymerase III alpha subunit TIGRFAM: polc: DNA polymerase III alpha subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=dnaE1;product=DNA-directed DNA polymerase.;protein_id=CAL95824.1;transl_table=11
AM406670.1	EMBL	gene	3536117	3537091	.	-	.	ID=gene3264;Name=qor;gbkey=Gene;gene=qor;gene_biotype=protein_coding;locus_tag=azo3209
AM406670.1	EMBL	CDS	3536117	3537091	.	-	0	ID=cds3205;Parent=gene3264;Dbxref=EnsemblGenomes-Gn:azo3209,EnsemblGenomes-Tr:CAL95825,GOA:A1KAG9,InterPro:IPR002085,InterPro:IPR002364,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR016040,UniProtKB/TrEMBL:A1KAG9,NCBI_GP:CAL95825.1;Name=CAL95825.1;Note=TREMBL:Q8XXD1: 69%25 identity%2C 76%25 similarity. Quinone oxidoreductase (EC 1.6.5.5) . qor%2C RSc2184%3B probable NADPH:quinone reductase%2C zeta-crystallin homolog oxidoreductase protein [EC:1.6.5.5] InterPro: Zinc-containing alcohol dehydrogenase superfamily InterPro:IPR002085%3B Adh_zn_family. IPR002364:QOR_zeta_crystal. Pfam:PF00107%3B ADH_zinc_N%3B 1 tdh: L-threonine 3-dehydrogenase%3B~High confidence in function and specificity;gbkey=CDS;gene=qor;product=NADPH:quinone reductase;protein_id=CAL95825.1;transl_table=11
AM406670.1	EMBL	gene	3537116	3538288	.	-	.	ID=gene3265;Name=azo3210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3210
AM406670.1	EMBL	CDS	3537116	3538288	.	-	0	ID=cds3206;Parent=gene3265;Dbxref=EnsemblGenomes-Gn:azo3210,EnsemblGenomes-Tr:CAL95826,GOA:A1KAH0,InterPro:IPR003187,UniProtKB/TrEMBL:A1KAH0,NCBI_GP:CAL95826.1;Name=CAL95826.1;Note=Exported protein with C-terminal domain%3B~Function unclear;gbkey=CDS;product=exported protein similar to outer membrane phospholipases;protein_id=CAL95826.1;transl_table=11
AM406670.1	EMBL	gene	3538418	3540706	.	-	.	ID=gene3266;Name=maeB2;gbkey=Gene;gene=maeB2;gene_biotype=protein_coding;locus_tag=azo3211
AM406670.1	EMBL	CDS	3538418	3540706	.	-	0	ID=cds3207;Parent=gene3266;Dbxref=EnsemblGenomes-Gn:azo3211,EnsemblGenomes-Tr:CAL95827,GOA:A1KAH1,InterPro:IPR001891,InterPro:IPR002505,InterPro:IPR012188,InterPro:IPR012301,InterPro:IPR012302,InterPro:IPR015884,InterPro:IPR016040,UniProtKB/TrEMBL:A1KAH1,NCBI_GP:CAL95827.1;Name=CAL95827.1;Note=Probable malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+). Homology to dme of S. meliloti of 61%25 (sprot|MAO1_RHIME). Required for symbiotic nitrogen fixation. Plays a key role in the conversion of malate to acetyl-CoA for efficient tricarboxylic acid cycle function in nitrogen-fixating bacteria. InterPro: Phosphate acetyl/butaryl transferase (IPR002505)%3B Malic enzyme (IPR001891) Pfam: Malic enzyme%3B Phosphate acetyl/butaryl transferase Tigrfam: pta: phosphotransacetylase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=maeB2;product=probable malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+);protein_id=CAL95827.1;transl_table=11
AM406670.1	EMBL	gene	3541054	3541833	.	+	.	ID=gene3267;Name=parA3;gbkey=Gene;gene=parA3;gene_biotype=protein_coding;locus_tag=azo3212
AM406670.1	EMBL	CDS	3541054	3541833	.	+	0	ID=cds3208;Parent=gene3267;Dbxref=EnsemblGenomes-Gn:azo3212,EnsemblGenomes-Tr:CAL95828,InterPro:IPR002586,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAH2,NCBI_GP:CAL95828.1;Name=CAL95828.1;Note=Sporulation initiation inhibitor protein soj. INHIBITS THE INITIATION OF SPORULATION SPO0J ANTAGONIZES THIS INHIBITION. SOJ ULTIMATELY INHIBITS THE ACTIVATION (PHOSPHORYLATION) OF SPO0A. IT IS NOT REQUIRED FOR CHROMOSOME PARTITIONING. InterPro: ParA family ATPase%3B~Function unclear;gbkey=CDS;gene=parA3;product=ParA family protein;protein_id=CAL95828.1;transl_table=11
AM406670.1	EMBL	gene	3541853	3544072	.	-	.	ID=gene3268;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;locus_tag=azo3213
AM406670.1	EMBL	CDS	3541853	3544072	.	-	0	ID=cds3209;Parent=gene3268;Dbxref=EnsemblGenomes-Gn:azo3213,EnsemblGenomes-Tr:CAL95829,GOA:A1KAH3,InterPro:IPR000212,InterPro:IPR013986,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAH3,NCBI_GP:CAL95829.1;Name=CAL95829.1;Note=DNA helicase II (EC 3.6.1.-). HAS BOTH ATPASE AND HELICASE ACTIVITIES. UNWINDS DNA DUPLEXES WITH 3 TO 5 POLARITY WITH RESPECT TO THE BOUND STRAND AND INITIATES UNWINDING MOST EFFECTIVELY WHEN A SINGLE-STRANDED REGION IS PRESENT. INVOLVED IN THE POSTINCISION EVENTS OF NUCLEOTIDE EXCISION REPAIR AND METHYL-DIRECTED MISMATCH REPAIR. InterPro: UvrD/REP helicase.%3B~High confidence in function and specificity;gbkey=CDS;gene=uvrD;product=DNA helicase II;protein_id=CAL95829.1;transl_table=11
AM406670.1	EMBL	gene	3544402	3544728	.	+	.	ID=gene3269;Name=azo3214;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3214
AM406670.1	EMBL	CDS	3544402	3544728	.	+	0	ID=cds3210;Parent=gene3269;Dbxref=EnsemblGenomes-Gn:azo3214,EnsemblGenomes-Tr:CAL95830,UniProtKB/TrEMBL:A1KAH4,NCBI_GP:CAL95830.1;Name=CAL95830.1;Note=Conserved hypothetical. Homology to Daro03003519 of Dechloromonas aromatica of 32%25 (gi|41722969|ref|ZP_00149935.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95830.1;transl_table=11
AM406670.1	EMBL	gene	3544948	3547569	.	+	.	ID=gene3270;Name=azo3215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3215
AM406670.1	EMBL	CDS	3544948	3547569	.	+	0	ID=cds3211;Parent=gene3270;Dbxref=EnsemblGenomes-Gn:azo3215,EnsemblGenomes-Tr:CAL95831,GOA:A1KAH5,InterPro:IPR001412,InterPro:IPR002300,InterPro:IPR002302,InterPro:IPR009008,InterPro:IPR009080,InterPro:IPR013155,InterPro:IPR014729,InterPro:IPR015413,InterPro:IPR025709,NCBI_GP:CAL95831.1;Name=CAL95831.1;Note=Region start changed from 3544790 to 3544922 (-132 bases);gbkey=CDS;product=CAL95831.1;protein_id=CAL95831.1;transl_table=11
AM406670.1	EMBL	gene	3547581	3548096	.	+	.	ID=gene3271;Name=rlpB;gbkey=Gene;gene=rlpB;gene_biotype=protein_coding;locus_tag=azo3216
AM406670.1	EMBL	CDS	3547581	3548096	.	+	0	ID=cds3212;Parent=gene3271;Dbxref=EnsemblGenomes-Gn:azo3216,EnsemblGenomes-Tr:CAL95832,GOA:A1KAH6,InterPro:IPR006311,InterPro:IPR007485,UniProtKB/TrEMBL:A1KAH6,NCBI_GP:CAL95832.1;Name=CAL95832.1;Note=rare lipoprotein B precursor;gbkey=CDS;gene=rlpB;product=putative lipoprotein;protein_id=CAL95832.1;transl_table=11
AM406670.1	EMBL	gene	3548093	3549103	.	+	.	ID=gene3272;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=azo3217
AM406670.1	EMBL	CDS	3548093	3549103	.	+	0	ID=cds3213;Parent=gene3272;Dbxref=EnsemblGenomes-Gn:azo3217,EnsemblGenomes-Tr:CAL95833,GOA:A1KAH7,InterPro:IPR005790,InterPro:IPR008921,InterPro:IPR010372,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAH7,NCBI_GP:CAL95833.1;Name=CAL95833.1;Note=DNA polymerase III delta subunit. DNA polymerase III is a complex multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3 to 5 exonuclease activity. The delta subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA.%3B~High confidence in function and specificity;gbkey=CDS;gene=holA;product=DNA-directed DNA polymerase;protein_id=CAL95833.1;transl_table=11
AM406670.1	EMBL	gene	3549209	3550468	.	+	.	ID=gene3273;Name=proA;gbkey=Gene;gene=proA;gene_biotype=protein_coding;locus_tag=azo3218
AM406670.1	EMBL	CDS	3549209	3550468	.	+	0	ID=cds3214;Parent=gene3273;Dbxref=EnsemblGenomes-Gn:azo3218,EnsemblGenomes-Tr:CAL95834,GOA:A1KAH8,InterPro:IPR000965,InterPro:IPR012134,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR020593,NCBI_GP:CAL95834.1;Name=CAL95834.1;Note=Gamma-glutamyl phosphate reductase%2C ProA. Similar to sprot|PROA_ECOLI (45%25) and to sprot|PROA_RALSO (62%25). Gamma-glutamyl phosphate reductase (GPR) is the enzyme that catalyzes the second step in the biosynthesis of proline from glutamate%2C the NADP-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. TIGRFAM proA : gamma-glutamyl phosphate reducta%3B~High confidence in function and specificity;gbkey=CDS;gene=proA;product=ProA protein;protein_id=CAL95834.1;transl_table=11
AM406670.1	EMBL	gene	3550691	3551608	.	+	.	ID=gene3274;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=azo3219
AM406670.1	EMBL	CDS	3550691	3551608	.	+	0	ID=cds3215;Parent=gene3274;Dbxref=EnsemblGenomes-Gn:azo3219,EnsemblGenomes-Tr:CAL95835,GOA:A1KAH9,InterPro:IPR002104,InterPro:IPR004107,InterPro:IPR010998,InterPro:IPR011010,InterPro:IPR011932,InterPro:IPR013762,InterPro:IPR023009,InterPro:IPR023109,UniProtKB/TrEMBL:A1KAH9,NCBI_GP:CAL95835.1;Name=CAL95835.1;Note=Tyrosine recombinase xerD. Site-specific tyrosine recombinase which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids (By similarity). InterPro: Phage integrase.%3B~High confidence in function and specificity;gbkey=CDS;gene=xerD;product=integrase/recombinase;protein_id=CAL95835.1;transl_table=11
AM406670.1	EMBL	gene	3551633	3552124	.	+	.	ID=gene3275;Name=ybaK;gbkey=Gene;gene=ybaK;gene_biotype=protein_coding;locus_tag=azo3220
AM406670.1	EMBL	CDS	3551633	3552124	.	+	0	ID=cds3216;Parent=gene3275;Dbxref=EnsemblGenomes-Gn:azo3220,EnsemblGenomes-Tr:CAL95836,GOA:A1KAI0,InterPro:IPR004369,InterPro:IPR007214,UniProtKB/TrEMBL:A1KAI0,NCBI_GP:CAL95836.1;Name=CAL95836.1;Note=Putative DNA-dependent transcriptional regulator%2CYbaK.68%25 identity (75%25 similarity) to TrEMBL%3BQ748B9. TrEMBL%3B Q8FK79(29%25 identity to E.coli%2CybaK).SwissProt%3BP37175 Has PF04073%2C YbaK / prolyl-tRNA synthetases associated domain%3BIPR007214%3B This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus%2C the domain is thought to be involved in oligo-nucleotide binding%2C with possible roles in recognition/discrimination or editing of prolyl-tRNA. TIGR00011%3B YbaK_EbsC%3B 1%3B~High confidence in function and specificity;gbkey=CDS;gene=ybaK;product=putative transcriptional regulator protein;protein_id=CAL95836.1;transl_table=11
AM406670.1	EMBL	gene	3552261	3552620	.	+	.	ID=gene3276;Name=hvrA2;gbkey=Gene;gene=hvrA2;gene_biotype=protein_coding;locus_tag=azo3221
AM406670.1	EMBL	CDS	3552261	3552620	.	+	0	ID=cds3217;Parent=gene3276;Dbxref=EnsemblGenomes-Gn:azo3221,EnsemblGenomes-Tr:CAL95837,GOA:A1KAI1,InterPro:IPR001801,InterPro:IPR027444,UniProtKB/TrEMBL:A1KAI1,NCBI_GP:CAL95837.1;Name=CAL95837.1;Note=Putative trans-acting regulatory protein HvrA. Homology to hvrA of R. capsulatus of 28%25 (sprot|HVRA_RHOCA) IT IS A DIM-LIGHT TRANS-ACTING ACTIVATOR OF PUF AND PUH EXPRESSION BUT HAS NO EFFECT ON THE EXPRESSION OF THE PUC OPERON. IT IS RESPONSIBLE FOR REGULATING LIGHT-HARVESTING-I AND REACTION CENTER STRUCTURAL GENE EXPRESSION DIFFERENTIALLY FROM THAT OF LIGHT-HARVESTING-II EXPRESSION IN RESPONSE TO ALTERATIONS IN LIGHT. PROPER LIGHT REGULATION OF LIGHT-HARVESTING AND REACTION CENTER POLYPEPTIDE SYNTHESIS IS INDEED AN IMPORTANT PHYSIOLOGICAL TRAIT THAT ENABLES CELLS TO ADAPT TO EVER-CHANGING ENVIRONMENTAL CONDITIONS OF LIGHT INTENSITY. InterPro: H-NS histone family (IPR001801) Pfam: H-NS histone family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=hvrA2;product=putative trans-acting regulatory protein HvrA;protein_id=CAL95837.1;transl_table=11
AM406670.1	EMBL	gene	3552711	3553088	.	-	.	ID=gene3277;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=azo3222
AM406670.1	EMBL	CDS	3552711	3553088	.	-	0	ID=cds3218;Parent=gene3277;Dbxref=EnsemblGenomes-Gn:azo3222,EnsemblGenomes-Tr:CAL95838,GOA:A1KAI2,InterPro:IPR006157,UniProtKB/TrEMBL:A1KAI2,NCBI_GP:CAL95838.1;Name=CAL95838.1;Note=Dihydroneopterin aldolase (DHNA). CATALYZES THE CONVERSION OF 78-DIHYDRONEOPTERIN TO 6-HYDROXYMETHYL-78-DIHYDROPTERIN. InterPro: Dihydroneopterin aldolase TIGRFAM: folB_dom: FolB domain%3B~High confidence in function and specificity;gbkey=CDS;gene=folB;product=FolB protein;protein_id=CAL95838.1;transl_table=11
AM406670.1	EMBL	gene	3553201	3553797	.	+	.	ID=gene3278;Name=azo3223;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3223
AM406670.1	EMBL	CDS	3553201	3553797	.	+	0	ID=cds3219;Parent=gene3278;Dbxref=EnsemblGenomes-Gn:azo3223,EnsemblGenomes-Tr:CAL95839,GOA:A1KAI3,InterPro:IPR003811,UniProtKB/TrEMBL:A1KAI3,NCBI_GP:CAL95839.1;Name=CAL95839.1;Note=Conserved hypothetical membrane protein.51%25 identity to TrEMBL%3BQ6D157. Has PF02660%2C Domain of unknown function DUF%3BIPR003811%3B This family consists of hypothetical transmembrane proteins none of which have any known function%2C the aligned region is around 200 amino acids long. TMHMM2 predicts 4 TMH's. Signal peptide present%2C but is overlapping with the DYF%2CPF02660 domain. SO is the TMH's.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95839.1;transl_table=11
AM406670.1	EMBL	gene	3553798	3554829	.	-	.	ID=gene3279;Name=gcp;gbkey=Gene;gene=gcp;gene_biotype=protein_coding;locus_tag=azo3224
AM406670.1	EMBL	CDS	3553798	3554829	.	-	0	ID=cds3220;Parent=gene3279;Dbxref=EnsemblGenomes-Gn:azo3224,EnsemblGenomes-Tr:CAL95840,GOA:A1KAI4,InterPro:IPR000905,InterPro:IPR017861,InterPro:IPR022450,NCBI_GP:CAL95840.1;Name=CAL95840.1;Note=Probable O-sialoglycoprotein endopeptidase(Glycoprotease). Hydrolysis of o-sialoglycoproteins%3B cleaves 31-arg-|-asp-32 bond in glycophorin a. Does not cleave unglycosylated proteins%2Cdesialylated glycoproteins or glycoproteins that are only n-glycosylated. Could be a metalloprotease. InterPro: Glycoprotease (M22) metallo-protease family (IPR000905) Pfam: Glycoprotease family Tigrfam: gcp: metalloendopeptidase putative%2C glycoprotease family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=gcp;product=probable O-sialoglycoprotein endopeptidase;protein_id=CAL95840.1;transl_table=11
AM406670.1	EMBL	gene	3554961	3555173	.	+	.	ID=gene3280;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=azo3225
AM406670.1	EMBL	CDS	3554961	3555173	.	+	0	ID=cds3221;Parent=gene3280;Dbxref=EnsemblGenomes-Gn:azo3225,EnsemblGenomes-Tr:CAL95841,GOA:A1KAI5,InterPro:IPR001911,InterPro:IPR018278,NCBI_GP:CAL95841.1;Name=CAL95841.1;Note=30S ribosomal protein S21.%3B~Function unclear;gbkey=CDS;gene=rpsU;product=30S ribosomal protein S21;protein_id=CAL95841.1;transl_table=11
AM406670.1	EMBL	gene	3555250	3557070	.	+	.	ID=gene3281;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=azo3226
AM406670.1	EMBL	CDS	3555250	3557070	.	+	0	ID=cds3222;Parent=gene3281;Dbxref=EnsemblGenomes-Gn:azo3226,EnsemblGenomes-Tr:CAL95842,GOA:A1KAI6,InterPro:IPR002694,InterPro:IPR006171,InterPro:IPR006295,InterPro:IPR013173,InterPro:IPR013264,InterPro:IPR016136,InterPro:IPR019475,UniProtKB/TrEMBL:A1KAI6,NCBI_GP:CAL95842.1;Name=CAL95842.1;Note=DNA primase (EC 2.7.7.-). DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis. MG010: DNA primase-related protein.%3B~High confidence in function and specificity;gbkey=CDS;gene=dnaG;product=DNA primase;protein_id=CAL95842.1;transl_table=11
AM406670.1	EMBL	gene	3557120	3559108	.	+	.	ID=gene3282;Name=rpoD;gbkey=Gene;gene=rpoD;gene_biotype=protein_coding;locus_tag=azo3227
AM406670.1	EMBL	CDS	3557120	3559108	.	+	0	ID=cds3223;Parent=gene3282;Dbxref=EnsemblGenomes-Gn:azo3227,EnsemblGenomes-Tr:CAL95843,GOA:A1KAI7,InterPro:IPR000943,InterPro:IPR007127,InterPro:IPR007624,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR007631,InterPro:IPR009042,InterPro:IPR011991,InterPro:IPR012760,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,InterPro:IPR028630,UniProtKB/TrEMBL:A1KAI7,NCBI_GP:CAL95843.1;Name=CAL95843.1;Note=RNA polymerase sigma factor rpoD (Sigma-70). The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. This is the primary sigma-factor of this bacteria. Similar to SWISSPROT: sprot|RPOD_ECOLI (54%25 Escherichia coli%2C RNA polymerase sigma factor rpoD) / sprot|RPOD_PSEAE (53%25 Pseudomonas aeruginosa%2C RNA polymerase sigma factor rpoD (sigma-70)) InterPro: IPR009043 RNA polymerase%2C sigma subunit. Pfam: PF00140 Sigma-70 factor. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpoD;product=RNA polymerase sigma factor;protein_id=CAL95843.1;transl_table=11
AM406670.1	EMBL	gene	3559218	3559501	.	+	.	ID=gene3283;Name=azo_tRNA_0051;gbkey=Gene;gene_biotype=tRNA;locus_tag=azo_tRNA_0051
AM406670.1	EMBL	tRNA	3559218	3559501	.	+	.	ID=rna59;Parent=gene3283;gbkey=tRNA
AM406670.1	EMBL	exon	3559218	3559501	.	+	.	ID=id60;Parent=rna59;gbkey=tRNA
AM406670.1	EMBL	gene	3559582	3559950	.	-	.	ID=gene3284;Name=gloA2;gbkey=Gene;gene=gloA2;gene_biotype=protein_coding;locus_tag=azo3228
AM406670.1	EMBL	CDS	3559582	3559950	.	-	0	ID=cds3224;Parent=gene3284;Dbxref=EnsemblGenomes-Gn:azo3228,EnsemblGenomes-Tr:CAL95844,GOA:A1KAI8,InterPro:IPR004360,InterPro:IPR004361,InterPro:IPR018146,InterPro:IPR029068,UniProtKB/TrEMBL:A1KAI8,NCBI_GP:CAL95844.1;Name=CAL95844.1;Note=Glyoxalase I catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid. Similar to trembl|Q9HY85 (74%25) and to sprot|LGUL_NEIMA (70%25). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ProDom (PD002334): Glyoxalase I%3B~High confidence in function and specificity;gbkey=CDS;gene=gloA2;product=lactoylglutathione lyase;protein_id=CAL95844.1;transl_table=11
AM406670.1	EMBL	gene	3559972	3560691	.	-	.	ID=gene3285;Name=azo3229;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3229
AM406670.1	EMBL	CDS	3559972	3560691	.	-	0	ID=cds3225;Parent=gene3285;Dbxref=EnsemblGenomes-Gn:azo3229,EnsemblGenomes-Tr:CAL95845,GOA:A1KAI9,InterPro:IPR002725,UniProtKB/TrEMBL:A1KAI9,NCBI_GP:CAL95845.1;Name=CAL95845.1;Note=Probable Hydrogenase expression/formation protein hupH. SIMILARITY:Belongs to the hupH/hyaF family SPROT:P48340: 37%25 identity%2C 54%25 similarity InterPro: IPR002725%3B DUF45. Pfam: PF01863%3B DUF45 Nonsecretory protein (Signal P predicted) No transmembrane helices (TMHMM predicted)%3B~High confidence in function and specificity;gbkey=CDS;product=putative hydrolase;protein_id=CAL95845.1;transl_table=11
AM406670.1	EMBL	gene	3560730	3561479	.	-	.	ID=gene3286;Name=azo3230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3230
AM406670.1	EMBL	CDS	3560730	3561479	.	-	0	ID=cds3226;Parent=gene3286;Dbxref=EnsemblGenomes-Gn:azo3230,EnsemblGenomes-Tr:CAL95846,GOA:A1KAJ0,InterPro:IPR001453,UniProtKB/TrEMBL:A1KAJ0,NCBI_GP:CAL95846.1;Name=CAL95846.1;Note=Probable Hypothetical protein Ta0487. trembl:Q7W4W1:50%25 identity%2C 62%25 similarity InterPro:IPR001453%3B MoCF_biosynth. Pfam: PF00994%3B MoCF_biosynth%3B 1. Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon molyb_syn: molybdenum cofactor synthe No signal peptide. No transmembrane helices%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95846.1;transl_table=11
AM406670.1	EMBL	gene	3561476	3562246	.	-	.	ID=gene3287;Name=azo3231;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3231
AM406670.1	EMBL	CDS	3561476	3562246	.	-	0	ID=cds3227;Parent=gene3287;Dbxref=EnsemblGenomes-Gn:azo3231,EnsemblGenomes-Tr:CAL95847,UniProtKB/TrEMBL:A1KAJ1,NCBI_GP:CAL95847.1;Name=CAL95847.1;Note=Conserved hypothetical membrane protein. Homology to ebA4352 of Azoarcus sp. EbN1 of 31%25 (gnl|keqq|eba:ebA4352(KEGG)). Has PF04401%2C Protein of unknown function (DUF540)%3B IPR007496 DUF540%3B Uncharacterised bacterial integral membrane protein%2Cpossibly involved in cysteine biosynthesis. Speculated to be involved in sulphate transport. no signal peptide. 6 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95847.1;transl_table=11
AM406670.1	EMBL	gene	3562254	3563612	.	-	.	ID=gene3288;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=azo3232
AM406670.1	EMBL	CDS	3562254	3563612	.	-	0	ID=cds3228;Parent=gene3288;Dbxref=EnsemblGenomes-Gn:azo3232,EnsemblGenomes-Tr:CAL95848,GOA:A1KAJ2,InterPro:IPR000897,InterPro:IPR003593,InterPro:IPR004125,InterPro:IPR004780,InterPro:IPR013822,InterPro:IPR022941,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAJ2,NCBI_GP:CAL95848.1;Name=CAL95848.1;Note=Signal recognition particle protein (Fifty-four homolog) (P48). NECESSARY FOR EFFICIENT EXPORT OF EXTRA-CYTOPLASMIC PROTEINS. BINDS TO THE SIGNAL SEQUENCE WHEN IT EMERGES FROM THE RIBOSOMES.The protein has a two domain structure: the G-domain binds GTP%3B the M-domain binds the RNA and also binds the signal sequence. It belongs to the GTP-binding SRP family. InterPro: Signal recognition particle protein 3a0501s01: signal recognition particl Pfam: SRP54-type protein (GTPase domain)%3B signal peptide binding domain no TMHs and signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=ffh;product=signal recognition particle protein;protein_id=CAL95848.1;transl_table=11
AM406670.1	EMBL	gene	3563665	3564489	.	+	.	ID=gene3289;Name=azo3233;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3233
AM406670.1	EMBL	CDS	3563665	3564489	.	+	0	ID=cds3229;Parent=gene3289;Dbxref=EnsemblGenomes-Gn:azo3233,EnsemblGenomes-Tr:CAL95849,GOA:A1KAJ3,InterPro:IPR002541,UniProtKB/TrEMBL:A1KAJ3,NCBI_GP:CAL95849.1;Name=CAL95849.1;Note=Conserved hypothetical membrane protein. Homology to ne1459 of N. europaea of 49%25 (trembl|Q82UM4). Pfam: Cytochrome C assembly protein. no signal peptide. 8 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95849.1;transl_table=11
AM406670.1	EMBL	gene	3564593	3566311	.	+	.	ID=gene3290;Name=pilB2;gbkey=Gene;gene=pilB2;gene_biotype=protein_coding;locus_tag=azo3234
AM406670.1	EMBL	CDS	3564593	3566311	.	+	0	ID=cds3230;Parent=gene3290;Dbxref=EnsemblGenomes-Gn:azo3234,EnsemblGenomes-Tr:CAL95850,GOA:A1KAJ4,InterPro:IPR001482,InterPro:IPR003593,InterPro:IPR007831,InterPro:IPR013374,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAJ4,NCBI_GP:CAL95850.1;Name=CAL95850.1;Note=Pilus assembly protein PilB is a component of the pilus biogenesis apparatus%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=pilB2;product=pilus biogenesis protein;protein_id=CAL95850.1;transl_table=11
AM406670.1	EMBL	gene	3566331	3567566	.	+	.	ID=gene3291;Name=pilC;gbkey=Gene;gene=pilC;gene_biotype=protein_coding;locus_tag=azo3235
AM406670.1	EMBL	CDS	3566331	3567566	.	+	0	ID=cds3231;Parent=gene3291;Dbxref=EnsemblGenomes-Gn:azo3235,EnsemblGenomes-Tr:CAL95851,GOA:A1KAJ5,InterPro:IPR001992,InterPro:IPR003004,InterPro:IPR018076,UniProtKB/TrEMBL:A1KAJ5,NCBI_GP:CAL95851.1;Name=CAL95851.1;Note=Pilus assembly protein PilC is a component of the pilus biogenesis apparatus%2C similarity to pir|B35384 (50%25). This apparatus is responsible for the stabilization%2C translocation and assembly of the monomeric pilin subunits into the pilus organelle. InterPro (IPR001992): Bacterial type II secretion system protein. InterPro (IPR003004): Bacterial general secretion pathway protein F Pfam (PF00482): Bacterial type II secretion system protein TMHMM reporting three TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=pilC;product=type 4 pilus biogenesis protein;protein_id=CAL95851.1;transl_table=11
AM406670.1	EMBL	gene	3567612	3568463	.	+	.	ID=gene3292;Name=pilD;gbkey=Gene;gene=pilD;gene_biotype=protein_coding;locus_tag=azo3236
AM406670.1	EMBL	CDS	3567612	3568463	.	+	0	ID=cds3232;Parent=gene3292;Dbxref=EnsemblGenomes-Gn:azo3236,EnsemblGenomes-Tr:CAL95852,GOA:A1KAJ6,InterPro:IPR000045,InterPro:IPR010627,InterPro:IPR014032,UniProtKB/TrEMBL:A1KAJ6,NCBI_GP:CAL95852.1;Name=CAL95852.1;Note=PilD is a prepilin peptidase processes the N-terminus of the prepilins. The processing is essential for the correct formation of the pseudopili of type IV bacterial protein secretion. Similar to pir|A39131 (58%25). InterPro(PF01478): Prepilin cysteine protease (C20)%2C type IV InterPro (PR00864): Prepilin cysteine protease (C20)%2Ctype IV TMHMM reporting six TMH.%3B~High confidence in function and specificity;gbkey=CDS;gene=pilD;product=prepilin peptidase;protein_id=CAL95852.1;transl_table=11
AM406670.1	EMBL	gene	3568611	3568871	.	+	.	ID=gene3293;Name=azo3237;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3237
AM406670.1	EMBL	CDS	3568611	3568871	.	+	0	ID=cds3233;Parent=gene3293;Dbxref=EnsemblGenomes-Gn:azo3237,EnsemblGenomes-Tr:CAL95853,InterPro:IPR013429,UniProtKB/TrEMBL:A1KAJ7,NCBI_GP:CAL95853.1;Name=CAL95853.1;Note=Conserved hypothetical protein. Homology to BB0113 of B.bronchiseptica of 56%25 (trembl:Q7WR44). No domas predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95853.1;transl_table=11
AM406670.1	EMBL	gene	3568884	3569510	.	+	.	ID=gene3294;Name=azo3238;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3238
AM406670.1	EMBL	CDS	3568884	3569510	.	+	0	ID=cds3234;Parent=gene3294;Dbxref=EnsemblGenomes-Gn:azo3238,EnsemblGenomes-Tr:CAL95854,InterPro:IPR007462,UniProtKB/TrEMBL:A1KAJ8,NCBI_GP:CAL95854.1;Name=CAL95854.1;Note=Conserved hypothetical membrane protein%2C 57%25 identity to TrEMBL%3BQ7W002. Has PF04367%2C Protein of unknown function (DUF502)%3BIPR007462%3B Predicted to be an integral membrane protein. Signal Peptide present. 1 TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95854.1;transl_table=11
AM406670.1	EMBL	gene	3569566	3571365	.	+	.	ID=gene3295;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;locus_tag=azo3239
AM406670.1	EMBL	CDS	3569566	3571365	.	+	0	ID=cds3235;Parent=gene3295;Dbxref=EnsemblGenomes-Gn:azo3239,EnsemblGenomes-Tr:CAL95855,GOA:A1KAJ9,InterPro:IPR002312,InterPro:IPR004115,InterPro:IPR004364,InterPro:IPR004365,InterPro:IPR004524,InterPro:IPR006195,InterPro:IPR012340,InterPro:IPR018150,InterPro:IPR029351,NCBI_GP:CAL95855.1;Name=CAL95855.1;Note=Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS).%3B~High confidence in function and specificity;gbkey=CDS;gene=aspS;product=AspS protein;protein_id=CAL95855.1;transl_table=11
AM406670.1	EMBL	gene	3571506	3573158	.	+	.	ID=gene3296;Name=azo3240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3240
AM406670.1	EMBL	CDS	3571506	3573158	.	+	0	ID=cds3236;Parent=gene3296;Dbxref=EnsemblGenomes-Gn:azo3240,EnsemblGenomes-Tr:CAL95856,GOA:A1KAK0,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011990,InterPro:IPR013026,UniProtKB/TrEMBL:A1KAK0,NCBI_GP:CAL95856.1;Name=CAL95856.1;Note=Putative response regulator%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative response regulator containing a tpr-domain;protein_id=CAL95856.1;transl_table=11
AM406670.1	EMBL	gene	3573175	3573540	.	+	.	ID=gene3297;Name=azo3241;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3241
AM406670.1	EMBL	CDS	3573175	3573540	.	+	0	ID=cds3237;Parent=gene3297;Dbxref=EnsemblGenomes-Gn:azo3241,EnsemblGenomes-Tr:CAL95857,GOA:A1KAK1,InterPro:IPR000026,InterPro:IPR016191,UniProtKB/TrEMBL:A1KAK1,NCBI_GP:CAL95857.1;Name=CAL95857.1;Note=InterPro: Guanine-specific ribonuclease N1 and T1%3B~Family membership;gbkey=CDS;product=ribonuclease;protein_id=CAL95857.1;transl_table=11
AM406670.1	EMBL	gene	3573537	3573992	.	+	.	ID=gene3298;Name=azo3242;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3242
AM406670.1	EMBL	CDS	3573537	3573992	.	+	0	ID=cds3238;Parent=gene3298;Dbxref=EnsemblGenomes-Gn:azo3242,EnsemblGenomes-Tr:CAL95858,InterPro:IPR000468,UniProtKB/TrEMBL:A1KAK2,NCBI_GP:CAL95858.1;Name=CAL95858.1;Note=Conserved hypothetical protein. Homology to XCC2280 of X.campestris of 33%25 (trembl:Q8P8G2). No domains predicted. No signal Peptide present. No TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95858.1;transl_table=11
AM406670.1	EMBL	gene	3574142	3574567	.	+	.	ID=gene3299;Name=hsp18;gbkey=Gene;gene=hsp18;gene_biotype=protein_coding;locus_tag=azo3243
AM406670.1	EMBL	CDS	3574142	3574567	.	+	0	ID=cds3239;Parent=gene3299;Dbxref=EnsemblGenomes-Gn:azo3243,EnsemblGenomes-Tr:CAL95859,InterPro:IPR002068,InterPro:IPR008978,UniProtKB/TrEMBL:A1KAK3,NCBI_GP:CAL95859.1;Name=CAL95859.1;Note=Putative small heat shock protein. Homology to hsp18 of C. acetobutylicum of 35%25 (sprot|HS18_CLOAB) InterPro: Heat shock hsp20 (alpha crystallin) proteins family (IPR002068) Pfam: Hsp20/alpa cystallin family no signal peptide no TMHs%3B~Function unclear;gbkey=CDS;gene=hsp18;product=putative small heat shock protein;protein_id=CAL95859.1;transl_table=11
AM406670.1	EMBL	gene	3574680	3575582	.	+	.	ID=gene3300;Name=argB;gbkey=Gene;gene=argB;gene_biotype=protein_coding;locus_tag=azo3244
AM406670.1	EMBL	CDS	3574680	3575582	.	+	0	ID=cds3240;Parent=gene3300;Dbxref=EnsemblGenomes-Gn:azo3244,EnsemblGenomes-Tr:CAL95860,GOA:A1KAK4,InterPro:IPR001048,InterPro:IPR001057,InterPro:IPR004662,NCBI_GP:CAL95860.1;Name=CAL95860.1;Note=Acetylglutamate kinase (NAG kinase) is part of the pathway that leads from glutamate to arginine. In lower organisms this pathway employs eight steps%2C starting with the acetylation of glutamate to form NAG. Similar to sprot|ARGB_CHRVO (71%25) and to sprot|ARGB_PSEAE (61%25). TIGRfam (TIGR00761): Acetylglutamate kinase%2C argB Pfam (PF00696): Aspartokinase superfamily%3B~High confidence in function and specificity;gbkey=CDS;gene=argB;product=ArgB protein;protein_id=CAL95860.1;transl_table=11
AM406670.1	EMBL	gene	3575587	3576747	.	+	.	ID=gene3301;Name=azo3245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3245
AM406670.1	EMBL	CDS	3575587	3576747	.	+	0	ID=cds3241;Parent=gene3301;Dbxref=EnsemblGenomes-Gn:azo3245,EnsemblGenomes-Tr:CAL95861,InterPro:IPR011050,InterPro:IPR012334,UniProtKB/TrEMBL:A1KAK5,NCBI_GP:CAL95861.1;Name=CAL95861.1;Note=Conserved hypothetical secreted protein. Homology to ebA4328 of Azoarcus sp. EbN1 of 59%25 (gnl|keqq|eba:ebA4328(KEGG)). no domains predicted. signal peptide. TMH in signal peptide;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95861.1;transl_table=11
AM406670.1	EMBL	gene	3576895	3578475	.	+	.	ID=gene3302;Name=fadD4;gbkey=Gene;gene=fadD4;gene_biotype=protein_coding;locus_tag=azo3246
AM406670.1	EMBL	CDS	3576895	3578475	.	+	0	ID=cds3242;Parent=gene3302;Dbxref=EnsemblGenomes-Gn:azo3246,EnsemblGenomes-Tr:CAL95862,GOA:A1KAK6,InterPro:IPR000873,InterPro:IPR017529,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:A1KAK6,NCBI_GP:CAL95862.1;Name=CAL95862.1;Note=Esterification%2C concomitant with transport%2C of exogenous long-chain fatty acids into metabolically active coa thioesters for subsequent degradation or incorporation into phospholipids%2C TREMBL:Q8UET3 (39%25 identity)%3B TREMBL:Q988H2 (38%25 identity). InterPro (IPR000873): AMP-dependent synthetase and ligase Pfam (PF00501): AMP-binding enzyme.%3B~High confidence in function and specificity;gbkey=CDS;gene=fadD4;product=Long-chain-fatty-acid-CoA ligase;protein_id=CAL95862.1;transl_table=11
AM406670.1	EMBL	gene	3578572	3580368	.	+	.	ID=gene3303;Name=asn;gbkey=Gene;gene=asn;gene_biotype=protein_coding;locus_tag=azo3247
AM406670.1	EMBL	CDS	3578572	3580368	.	+	0	ID=cds3243;Parent=gene3303;Dbxref=EnsemblGenomes-Gn:azo3247,EnsemblGenomes-Tr:CAL95863,GOA:A1KAK7,InterPro:IPR000583,InterPro:IPR001962,InterPro:IPR014729,InterPro:IPR029055,UniProtKB/TrEMBL:A1KAK7,NCBI_GP:CAL95863.1;Name=CAL95863.1;Note=Asparagine synthase catalyze the conversion of aspartate to asparagine. Similar to trembl|Q82VG1 (45%25) and to trembl|Q7USD1 (27%25). Pfam (PF00733): Asparagine synthase%3B~Family membership;gbkey=CDS;gene=asn;product=probable asparagine synthase;protein_id=CAL95863.1;transl_table=11
AM406670.1	EMBL	gene	3580380	3581663	.	+	.	ID=gene3304;Name=lysA1;gbkey=Gene;gene=lysA1;gene_biotype=protein_coding;locus_tag=azo3248
AM406670.1	EMBL	CDS	3580380	3581663	.	+	0	ID=cds3244;Parent=gene3304;Dbxref=EnsemblGenomes-Gn:azo3248,EnsemblGenomes-Tr:CAL95864,GOA:A1KAK8,InterPro:IPR000183,InterPro:IPR009006,InterPro:IPR017530,InterPro:IPR022643,InterPro:IPR022644,InterPro:IPR022657,InterPro:IPR029066,UniProtKB/TrEMBL:A1KAK8,NCBI_GP:CAL95864.1;Name=CAL95864.1;Note=Diaminopimelate decarboxylase%2C%3B~Specificity unclear;gbkey=CDS;gene=lysA1;product=probable diaminopimelate decarboxylase;protein_id=CAL95864.1;transl_table=11
AM406670.1	EMBL	gene	3581684	3582433	.	-	.	ID=gene3305;Name=azo3249;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3249
AM406670.1	EMBL	CDS	3581684	3582433	.	-	0	ID=cds3245;Parent=gene3305;Dbxref=EnsemblGenomes-Gn:azo3249,EnsemblGenomes-Tr:CAL95865,InterPro:IPR011990,InterPro:IPR013026,UniProtKB/TrEMBL:A1KAK9,NCBI_GP:CAL95865.1;Name=CAL95865.1;Note=Conserved hypothetical secreted protein. Homolgy to ne2159 of N. europaea of 33%25 (trembl|Q82SY7). InterPro: TPR repeat (IPR001440). Pfam: TPR domain signal peptide. TMH in signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95865.1;transl_table=11
AM406670.1	EMBL	gene	3582430	3583287	.	-	.	ID=gene3306;Name=azo3250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3250
AM406670.1	EMBL	CDS	3582430	3583287	.	-	0	ID=cds3246;Parent=gene3306;Dbxref=EnsemblGenomes-Gn:azo3250,EnsemblGenomes-Tr:CAL95866,InterPro:IPR017531,InterPro:IPR029058,UniProtKB/TrEMBL:A1KAL0,NCBI_GP:CAL95866.1;Name=CAL95866.1;Note=Conserved hypothetical protein. Homology to ne2161 of N. europaea of 45%25 (trembl|Q82SY5). Interpro: Esterase/lipase/thioesterase family. no damians predicted. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95866.1;transl_table=11
AM406670.1	EMBL	gene	3583284	3584120	.	-	.	ID=gene3307;Name=azo3251;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3251
AM406670.1	EMBL	CDS	3583284	3584120	.	-	0	ID=cds3247;Parent=gene3307;Dbxref=EnsemblGenomes-Gn:azo3251,EnsemblGenomes-Tr:CAL95867,GOA:A1KAL1,InterPro:IPR017532,InterPro:IPR029058,UniProtKB/TrEMBL:A1KAL1,NCBI_GP:CAL95867.1;Name=CAL95867.1;Note=Probable Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase) (Adenylyl cyclase). TREMBL:Q82SY4:40%25 identity%2C 57%25 similarity. InterPro:IPR000379%3B Ser_estrs Pfam:UPF0007:Uncharacterized protein family UPF000 thiE: thiamine-phosphate pyrophosphorylas No transmembrane helices%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95867.1;transl_table=11
AM406670.1	EMBL	gene	3584127	3584411	.	-	.	ID=gene3308;Name=azo3252;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3252
AM406670.1	EMBL	CDS	3584127	3584411	.	-	0	ID=cds3248;Parent=gene3308;Dbxref=EnsemblGenomes-Gn:azo3252,EnsemblGenomes-Tr:CAL95868,InterPro:IPR009081,UniProtKB/TrEMBL:A1KAL2,NCBI_GP:CAL95868.1;Name=CAL95868.1;Note=Conserved hypothetical protein. Homology to ne2163 of N. europaea of 42%25 (trembl|Q82SY3). Pfam: Poshpopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. no signal peptide. no TMHS;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95868.1;transl_table=11
AM406670.1	EMBL	gene	3584536	3585771	.	+	.	ID=gene3309;Name=azo3253;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3253
AM406670.1	EMBL	CDS	3584536	3585771	.	+	0	ID=cds3249;Parent=gene3309;Dbxref=EnsemblGenomes-Gn:azo3253,EnsemblGenomes-Tr:CAL95869,UniProtKB/TrEMBL:A1KAL3,NCBI_GP:CAL95869.1;Name=CAL95869.1;Note=Conserved hypothetical protein. Homology to Mmc102002678 of Magnetococcus sp. MC-1 of 44%25 (gi|48831833|ref|ZP_00288884.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95869.1;transl_table=11
AM406670.1	EMBL	gene	3585774	3586460	.	+	.	ID=gene3310;Name=azo3254;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3254
AM406670.1	EMBL	CDS	3585774	3586460	.	+	0	ID=cds3250;Parent=gene3310;Dbxref=EnsemblGenomes-Gn:azo3254,EnsemblGenomes-Tr:CAL95870,InterPro:IPR016181,UniProtKB/TrEMBL:A1KAL4,NCBI_GP:CAL95870.1;Name=CAL95870.1;Note=May be related to biosynthesos of cell surface carbohydrates / polysaccharides.;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95870.1;transl_table=11
AM406670.1	EMBL	gene	3586547	3588568	.	+	.	ID=gene3311;Name=azo3255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3255
AM406670.1	EMBL	CDS	3586547	3588568	.	+	0	ID=cds3251;Parent=gene3311;Dbxref=EnsemblGenomes-Gn:azo3255,EnsemblGenomes-Tr:CAL95871,GOA:A1KAL5,InterPro:IPR002656,UniProtKB/TrEMBL:A1KAL5,NCBI_GP:CAL95871.1;Name=CAL95871.1;Note=Specificity unclear;gbkey=CDS;product=acyltransferase;protein_id=CAL95871.1;transl_table=11
AM406670.1	EMBL	gene	3588679	3590055	.	+	.	ID=gene3312;Name=azo3256;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3256
AM406670.1	EMBL	CDS	3588679	3590055	.	+	0	ID=cds3252;Parent=gene3312;Dbxref=EnsemblGenomes-Gn:azo3256,EnsemblGenomes-Tr:CAL95872,UniProtKB/TrEMBL:A1KAL6,NCBI_GP:CAL95872.1;Name=CAL95872.1;Note=Conserved hypothetical polysaccharide biosynthesis protein%2C related to GumJ. Homology to ebA4295 of Azoarcus sp. EbN1 of 42%25. Pfam: Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis SP5B_BACSU%2C which is involved in spore cortex biosynthesis. No signal peptide. 10 TMHs.%3B~Family membership;gbkey=CDS;product=conserved hypotheitcal polysaccharide biosynthesis protein;protein_id=CAL95872.1;transl_table=11
AM406670.1	EMBL	gene	3590109	3591152	.	+	.	ID=gene3313;Name=azo3257;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3257
AM406670.1	EMBL	CDS	3590109	3591152	.	+	0	ID=cds3253;Parent=gene3313;Dbxref=EnsemblGenomes-Gn:azo3257,EnsemblGenomes-Tr:CAL95873,InterPro:IPR007345,UniProtKB/TrEMBL:A1KAL7,NCBI_GP:CAL95873.1;Name=CAL95873.1;Note=Similar to putative exopolysaccharide polymerization protein PssK%3B~Family membership;gbkey=CDS;product=polysaccharide polymerase;protein_id=CAL95873.1;transl_table=11
AM406670.1	EMBL	gene	3591156	3592049	.	+	.	ID=gene3314;Name=azo3258;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3258
AM406670.1	EMBL	CDS	3591156	3592049	.	+	0	ID=cds3254;Parent=gene3314;Dbxref=EnsemblGenomes-Gn:azo3258,EnsemblGenomes-Tr:CAL95874,GOA:A1KAL8,InterPro:IPR029044,UniProtKB/TrEMBL:A1KAL8,NCBI_GP:CAL95874.1;Name=CAL95874.1;Note=InterPro: Glycosyl transferase family 2%3B~Function unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95874.1;transl_table=11
AM406670.1	EMBL	gene	3592004	3592930	.	-	.	ID=gene3315;Name=azo3259;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3259
AM406670.1	EMBL	CDS	3592004	3592930	.	-	0	ID=cds3255;Parent=gene3315;Dbxref=EnsemblGenomes-Gn:azo3259,EnsemblGenomes-Tr:CAL95875,GOA:A1KAL9,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:A1KAL9,NCBI_GP:CAL95875.1;Name=CAL95875.1;Note=InterPro: Glycosyl transferase family 2%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95875.1;transl_table=11
AM406670.1	EMBL	gene	3593146	3594084	.	+	.	ID=gene3316;Name=azo3260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3260
AM406670.1	EMBL	CDS	3593146	3594084	.	+	0	ID=cds3256;Parent=gene3316;Dbxref=EnsemblGenomes-Gn:azo3260,EnsemblGenomes-Tr:CAL95876,GOA:A1KAM0,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:A1KAM0,NCBI_GP:CAL95876.1;Name=CAL95876.1;Note=InterPro: Glycosyl transferase family 2%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95876.1;transl_table=11
AM406670.1	EMBL	gene	3594077	3595309	.	+	.	ID=gene3317;Name=azo3261;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3261
AM406670.1	EMBL	CDS	3594077	3595309	.	+	0	ID=cds3257;Parent=gene3317;Dbxref=EnsemblGenomes-Gn:azo3261,EnsemblGenomes-Tr:CAL95877,GOA:A1KAM1,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:A1KAM1,NCBI_GP:CAL95877.1;Name=CAL95877.1;Note=Putative glycosyl transferase ypjH (EC 2.-.-.-). TIGR00022: conserved hypothetical pro%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95877.1;transl_table=11
AM406670.1	EMBL	gene	3595306	3596340	.	+	.	ID=gene3318;Name=azo3262;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3262
AM406670.1	EMBL	CDS	3595306	3596340	.	+	0	ID=cds3258;Parent=gene3318;Dbxref=EnsemblGenomes-Gn:azo3262,EnsemblGenomes-Tr:CAL95878,GOA:A1KAM2,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:A1KAM2,NCBI_GP:CAL95878.1;Name=CAL95878.1;Note=Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-). InterPro: Glycosyl transferases group 1%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95878.1;transl_table=11
AM406670.1	EMBL	gene	3596367	3597584	.	+	.	ID=gene3319;Name=azo3263;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3263
AM406670.1	EMBL	CDS	3596367	3597584	.	+	0	ID=cds3259;Parent=gene3319;Dbxref=EnsemblGenomes-Gn:azo3263,EnsemblGenomes-Tr:CAL95879,InterPro:IPR015915,UniProtKB/TrEMBL:A1KAM3,NCBI_GP:CAL95879.1;Name=CAL95879.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95879.1;transl_table=11
AM406670.1	EMBL	gene	3597597	3599087	.	-	.	ID=gene3320;Name=azo3264;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3264
AM406670.1	EMBL	CDS	3597597	3599087	.	-	0	ID=cds3260;Parent=gene3320;Dbxref=EnsemblGenomes-Gn:azo3264,EnsemblGenomes-Tr:CAL95880,UniProtKB/TrEMBL:A1KAM4,NCBI_GP:CAL95880.1;Name=CAL95880.1;Note=Conserved hypothetical secreted protein. Homology RB4730 of Rhodopirellula baltica of 36%25 (trembl|Q7US36). No domains predicted. Signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95880.1;transl_table=11
AM406670.1	EMBL	gene	3599098	3600003	.	-	.	ID=gene3321;Name=azo3265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3265
AM406670.1	EMBL	CDS	3599098	3600003	.	-	0	ID=cds3261;Parent=gene3321;Dbxref=EnsemblGenomes-Gn:azo3265,EnsemblGenomes-Tr:CAL95881,GOA:A1KAM5,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:A1KAM5,NCBI_GP:CAL95881.1;Name=CAL95881.1;Note=Similar to a gene annotaed to encode a dolichol-phosphate mannosyltransferase%2C a glycosyltransferase that transfers a suga directly to a lipid carrier. InterPro: Glycosyl transferase family 2%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95881.1;transl_table=11
AM406670.1	EMBL	gene	3600066	3601037	.	-	.	ID=gene3322;Name=azo3266;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3266
AM406670.1	EMBL	CDS	3600066	3601037	.	-	0	ID=cds3262;Parent=gene3322;Dbxref=EnsemblGenomes-Gn:azo3266,EnsemblGenomes-Tr:CAL95882,GOA:A1KAM6,InterPro:IPR002509,InterPro:IPR011330,UniProtKB/TrEMBL:A1KAM6,NCBI_GP:CAL95882.1;Name=CAL95882.1;Note=Conserved hypothetical polysacchacride deacetylase. Homology to N. europaea of N. europaea of 54%25 (trembl|Q82W49(SRS)). This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast%2C and endoxylanases which hydrolyses glucosidic bonds in xylan. InterPro:IPR002509%3B Polysac_deacet. Pfam:PF01522%3B Polysacc_deac_1%3B 1. no TMHs no signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical polysaccharide deacetylase;protein_id=CAL95882.1;transl_table=11
AM406670.1	EMBL	gene	3601034	3602380	.	-	.	ID=gene3323;Name=azo3267;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3267
AM406670.1	EMBL	CDS	3601034	3602380	.	-	0	ID=cds3263;Parent=gene3323;Dbxref=EnsemblGenomes-Gn:azo3267,EnsemblGenomes-Tr:CAL95883,InterPro:IPR017528,UniProtKB/TrEMBL:A1KAM7,NCBI_GP:CAL95883.1;Name=CAL95883.1;Note=Conserved hypothetical membrane protein. Homology to RferDRAFT_3275 of Rhodoferax ferrireducens of 46%25. Pfam: O-Antigen Polymerase. This group of bacterial proteins is involved in the synthesis of O-antigen%2C a lipopolysaccharide found in the outer membrane in gram-negative bacteria. The enzyme is coded for by the gene wzy which is part of the O-antigen gene cluster. No signal peptide. 9 TMHs.%3B~Family membership;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95883.1;transl_table=11
AM406670.1	EMBL	gene	3602380	3603606	.	-	.	ID=gene3324;Name=azo3268;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3268
AM406670.1	EMBL	CDS	3602380	3603606	.	-	0	ID=cds3264;Parent=gene3324;Dbxref=EnsemblGenomes-Gn:azo3268,EnsemblGenomes-Tr:CAL95884,GOA:A1KAM8,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:A1KAM8,NCBI_GP:CAL95884.1;Name=CAL95884.1;Note=InterPro: Glycosyl transferases group 1%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95884.1;transl_table=11
AM406670.1	EMBL	gene	3603654	3604970	.	-	.	ID=gene3325;Name=algD;gbkey=Gene;gene=algD;gene_biotype=protein_coding;locus_tag=azo3269
AM406670.1	EMBL	CDS	3603654	3604970	.	-	0	ID=cds3265;Parent=gene3325;Dbxref=EnsemblGenomes-Gn:azo3269,EnsemblGenomes-Tr:CAL95885,GOA:A1KAM9,InterPro:IPR001732,InterPro:IPR008927,InterPro:IPR014026,InterPro:IPR014027,InterPro:IPR016040,InterPro:IPR017476,InterPro:IPR028357,UniProtKB/TrEMBL:A1KAM9,NCBI_GP:CAL95885.1;Name=CAL95885.1;Note=[EC:1.1.1.132] %2C UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH).%2CUDP-glucose/GDP-mannose dehydrogenase%2C UDP-glucose/GDP-mannose dehydrogenase family%2C NAD binding domain%3B~High confidence in function and specificity;gbkey=CDS;gene=algD;product=GDP-mannose 6-dehydrogenase;protein_id=CAL95885.1;transl_table=11
AM406670.1	EMBL	gene	3604967	3606178	.	-	.	ID=gene3326;Name=azo3270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3270
AM406670.1	EMBL	CDS	3604967	3606178	.	-	0	ID=cds3266;Parent=gene3326;Dbxref=EnsemblGenomes-Gn:azo3270,EnsemblGenomes-Tr:CAL95886,GOA:A1KAN0,InterPro:IPR017521,InterPro:IPR028098,UniProtKB/TrEMBL:A1KAN0,NCBI_GP:CAL95886.1;Name=CAL95886.1;Note=InterPro: Glycosyl transferases group 1%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95886.1;transl_table=11
AM406670.1	EMBL	gene	3606175	3608103	.	-	.	ID=gene3327;Name=asnB1;gbkey=Gene;gene=asnB1;gene_biotype=protein_coding;locus_tag=azo3271
AM406670.1	EMBL	CDS	3606175	3608103	.	-	0	ID=cds3267;Parent=gene3327;Dbxref=EnsemblGenomes-Gn:azo3271,EnsemblGenomes-Tr:CAL95887,GOA:A1KAN1,InterPro:IPR000583,InterPro:IPR001962,InterPro:IPR006426,InterPro:IPR014729,InterPro:IPR017932,InterPro:IPR029055,UniProtKB/TrEMBL:A1KAN1,NCBI_GP:CAL95887.1;Name=CAL95887.1;Note=Asparagine synthetase B catalyzes the assembly of asparagine from aspartate%2C Mg(2+)ATP%2C and glutamine. Similar to trembl|Q7USD1 (35%25) and to sprot|ASNB_BACSU (30%25). Pfam (PF00310): Glutamine amidotransferase class-II Pfam (PF00733): Asparagine synthase%3B~Specificity unclear;gbkey=CDS;gene=asnB1;product=probable asparagine synthetase;protein_id=CAL95887.1;transl_table=11
AM406670.1	EMBL	gene	3608105	3609364	.	-	.	ID=gene3328;Name=azo3272;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3272
AM406670.1	EMBL	CDS	3608105	3609364	.	-	0	ID=cds3268;Parent=gene3328;Dbxref=EnsemblGenomes-Gn:azo3272,EnsemblGenomes-Tr:CAL95888,GOA:A1KAN2,InterPro:IPR001296,InterPro:IPR024004,InterPro:IPR028098,UniProtKB/TrEMBL:A1KAN2,NCBI_GP:CAL95888.1;Name=CAL95888.1;Note=InterPro: Glycosyl transferases group 1%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95888.1;transl_table=11
AM406670.1	EMBL	gene	3609333	3611267	.	-	.	ID=gene3329;Name=asnB2;gbkey=Gene;gene=asnB2;gene_biotype=protein_coding;locus_tag=azo3273
AM406670.1	EMBL	CDS	3609333	3611267	.	-	0	ID=cds3269;Parent=gene3329;Dbxref=EnsemblGenomes-Gn:azo3273,EnsemblGenomes-Tr:CAL95889,GOA:A1KAN3,InterPro:IPR000583,InterPro:IPR001962,InterPro:IPR006426,InterPro:IPR014729,InterPro:IPR017539,InterPro:IPR017932,InterPro:IPR029055,UniProtKB/TrEMBL:A1KAN3,NCBI_GP:CAL95889.1;Name=CAL95889.1;Note=Asparagine synthetase B catalyzes the assembly of asparagine from aspartate%2C Mg(2+)ATP%2C and glutamine. Similar to trembl|Q81ZU7 (64%25) and to trembl|Q7USD1 (37%25). Pfam (PF00310): Glutamine amidotransferase class-II Pfam (PF00733): Asparagine synthase%3B~Specificity unclear;gbkey=CDS;gene=asnB2;product=probable asparagine synthetase;protein_id=CAL95889.1;transl_table=11
AM406670.1	EMBL	gene	3611287	3612462	.	-	.	ID=gene3330;Name=azo3274;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3274
AM406670.1	EMBL	CDS	3611287	3612462	.	-	0	ID=cds3270;Parent=gene3330;Dbxref=EnsemblGenomes-Gn:azo3274,EnsemblGenomes-Tr:CAL95890,GOA:A1KAN4,InterPro:IPR001296,InterPro:IPR017522,InterPro:IPR028098,UniProtKB/TrEMBL:A1KAN4,NCBI_GP:CAL95890.1;Name=CAL95890.1;Note=InterPro: Glycosyl transferases group 1%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL95890.1;transl_table=11
AM406670.1	EMBL	gene	3612459	3614009	.	-	.	ID=gene3331;Name=azo3275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3275
AM406670.1	EMBL	CDS	3612459	3614009	.	-	0	ID=cds3271;Parent=gene3331;Dbxref=EnsemblGenomes-Gn:azo3275,EnsemblGenomes-Tr:CAL95891,InterPro:IPR013426,InterPro:IPR014263,InterPro:IPR017540,InterPro:IPR019127,InterPro:IPR026392,UniProtKB/TrEMBL:A1KAN5,NCBI_GP:CAL95891.1;Name=CAL95891.1;Note=Conserved hypothetical membrane protein. Homology to NE1797 of Nitrosomonas europaea of 33%25 (trembl|Q82TS7(SRS)). no domains predicted. signal peptide. 7 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95891.1;transl_table=11
AM406670.1	EMBL	gene	3614065	3615168	.	-	.	ID=gene3332;Name=azo3276;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3276
AM406670.1	EMBL	CDS	3614065	3615168	.	-	0	ID=cds3272;Parent=gene3332;Dbxref=EnsemblGenomes-Gn:azo3276,EnsemblGenomes-Tr:CAL95892,InterPro:IPR016181,InterPro:IPR017469,UniProtKB/TrEMBL:A1KAN6,NCBI_GP:CAL95892.1;Name=CAL95892.1;Note=Possibly related to cell surface polysaccharide biosynthesis%2C due to the presence of the gene in a polysaccharide synthesis gene cluster.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95892.1;transl_table=11
AM406670.1	EMBL	gene	3615137	3615997	.	-	.	ID=gene3333;Name=azo3277;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3277
AM406670.1	EMBL	CDS	3615137	3615997	.	-	0	ID=cds3273;Parent=gene3333;Dbxref=EnsemblGenomes-Gn:azo3277,EnsemblGenomes-Tr:CAL95893,GOA:A1KAN7,InterPro:IPR002509,InterPro:IPR011330,InterPro:IPR014344,InterPro:IPR022560,UniProtKB/TrEMBL:A1KAN7,NCBI_GP:CAL95893.1;Name=CAL95893.1;Note=62%25 Myb_DNA_binding.IPR002509%3B Polysac_deacet. Pfam:PF01522%3B Polysacc_deac_1%3B 1.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95893.1;transl_table=11
AM406670.1	EMBL	gene	3615997	3617154	.	-	.	ID=gene3334;Name=mnaA;gbkey=Gene;gene=mnaA;gene_biotype=protein_coding;locus_tag=azo3278
AM406670.1	EMBL	CDS	3615997	3617154	.	-	0	ID=cds3274;Parent=gene3334;Dbxref=EnsemblGenomes-Gn:azo3278,EnsemblGenomes-Tr:CAL95894,GOA:A1KAN8,InterPro:IPR003331,InterPro:IPR029767,UniProtKB/TrEMBL:A1KAN8,NCBI_GP:CAL95894.1;Name=CAL95894.1;Note=UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) (UDP-GlcNAc-2- epimerase). Catalyzes the reversible epimerization at C-2 of UDP-N- acetylglucosamine (UDP-GlcNAc) and thereby provides bacteria with UDP-N-acetylmannosamine (UDP-ManNAc) the activated donor of ManNAc residues (By similarity). InterPro: UDP-N-acetylglucosamine 2-epimerase%3B~High confidence in function and specificity;gbkey=CDS;gene=mnaA;product=UDP-N-acetylglucosamine 2-epimerase;protein_id=CAL95894.1;transl_table=11
AM406670.1	EMBL	gene	3617151	3618224	.	-	.	ID=gene3335;Name=gspA;gbkey=Gene;gene=gspA;gene_biotype=protein_coding;locus_tag=azo3279
AM406670.1	EMBL	CDS	3617151	3618224	.	-	0	ID=cds3275;Parent=gene3335;Dbxref=EnsemblGenomes-Gn:azo3279,EnsemblGenomes-Tr:CAL95895,InterPro:IPR003593,InterPro:IPR017466,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAN9,NCBI_GP:CAL95895.1;Name=CAL95895.1;Note=General secretion pathway protein A. Involved in a general secretion pathway (GSP) for the export of proteins. InterPro: AAA ATPase superfamily POssibly related to the biosynthesis of cell surface polysaccharide due to the presence of the gene in a polysaccharide synthesis gene cluster.%3B~High confidence in function and specificity;gbkey=CDS;gene=gspA;product=MSHA biogenesis protein MshM;protein_id=CAL95895.1;transl_table=11
AM406670.1	EMBL	gene	3618237	3619733	.	-	.	ID=gene3336;Name=azo3280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3280
AM406670.1	EMBL	CDS	3618237	3619733	.	-	0	ID=cds3276;Parent=gene3336;Dbxref=EnsemblGenomes-Gn:azo3280,EnsemblGenomes-Tr:CAL95896,InterPro:IPR017467,InterPro:IPR018759,UniProtKB/TrEMBL:A1KAP0,NCBI_GP:CAL95896.1;Name=CAL95896.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95896.1;transl_table=11
AM406670.1	EMBL	gene	3619774	3620715	.	-	.	ID=gene3337;Name=wzc2;gbkey=Gene;gene=wzc2;gene_biotype=protein_coding;locus_tag=azo3281
AM406670.1	EMBL	CDS	3619774	3620715	.	-	0	ID=cds3277;Parent=gene3337;Dbxref=EnsemblGenomes-Gn:azo3281,EnsemblGenomes-Tr:CAL95897,GOA:A1KAP1,InterPro:IPR025669,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAP1,NCBI_GP:CAL95897.1;Name=CAL95897.1;Note=Putative tyrosine-protein kinase (EC 2.7.10.1).%3B~High confidence in function and specificity;gbkey=CDS;gene=wzc2;product=protein-tyrosine kinase;protein_id=CAL95897.1;transl_table=11
AM406670.1	EMBL	gene	3620729	3622273	.	-	.	ID=gene3338;Name=azo3282;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3282
AM406670.1	EMBL	CDS	3620729	3622273	.	-	0	ID=cds3278;Parent=gene3338;Dbxref=EnsemblGenomes-Gn:azo3282,EnsemblGenomes-Tr:CAL95898,GOA:A1KAP2,InterPro:IPR003856,InterPro:IPR014345,UniProtKB/TrEMBL:A1KAP2,NCBI_GP:CAL95898.1;Name=CAL95898.1;Note=Conserved hypothetical polysaccharide chain length determinant protein. Homology to ebA4249 of Azoarcus sp. EbN1 of 66%25. No signal peptide. 3 TMHS. Pfam: Wzz %3D Chain length determinant protein. This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases such as ETK_ECOLI.%3B~Family membership;gbkey=CDS;product=conserved hypothetical polysaccharide chain length determinant protein;protein_id=CAL95898.1;transl_table=11
AM406670.1	EMBL	gene	3622352	3622981	.	-	.	ID=gene3339;Name=wza;gbkey=Gene;gene=wza;gene_biotype=protein_coding;locus_tag=azo3283
AM406670.1	EMBL	CDS	3622352	3622981	.	-	0	ID=cds3279;Parent=gene3339;Dbxref=EnsemblGenomes-Gn:azo3283,EnsemblGenomes-Tr:CAL95899,GOA:A1KAP3,InterPro:IPR003715,InterPro:IPR017477,InterPro:IPR019554,UniProtKB/TrEMBL:A1KAP3,NCBI_GP:CAL95899.1;Name=CAL95899.1;Note=Conserved hypothetical polysaccharid export protein. Homology to wza of Azoarcus sp. EbN1 of 80%25. Pfam: Polysaccharide biosynthesis/export protein. This is a family of periplasmic proteins involved in polysaccharide biosynthesis and/or export. No TMHs. Signal peptide present.%2C %2C%3B~Family membership;gbkey=CDS;gene=wza;product=conserved hypothetical polysaccharide export protein;protein_id=CAL95899.1;transl_table=11
AM406670.1	EMBL	gene	3623219	3623971	.	+	.	ID=gene3340;Name=azo3284;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3284
AM406670.1	EMBL	CDS	3623219	3623971	.	+	0	ID=cds3280;Parent=gene3340;Dbxref=EnsemblGenomes-Gn:azo3284,EnsemblGenomes-Tr:CAL95900,InterPro:IPR016181,UniProtKB/TrEMBL:A1KAP4,NCBI_GP:CAL95900.1;Name=CAL95900.1;Note=Conserved hypothetical protein. Homology to ne2229 of N. europaea of 38%25 (trembl|Q82SS7). no domains predicted. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95900.1;transl_table=11
AM406670.1	EMBL	gene	3623979	3625292	.	-	.	ID=gene3341;Name=azo3285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3285
AM406670.1	EMBL	CDS	3623979	3625292	.	-	0	ID=cds3281;Parent=gene3341;Dbxref=EnsemblGenomes-Gn:azo3285,EnsemblGenomes-Tr:CAL95901,InterPro:IPR023614,UniProtKB/TrEMBL:A1KAP5,NCBI_GP:CAL95901.1;Name=CAL95901.1;Note=Conserved hypothetical secreted protein. Homology to NE2243 of Nitrosomonas europaea of 43%25 (trembl|Q82SR4(SRS). No domains predicted. Signal peptide present. No TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95901.1;transl_table=11
AM406670.1	EMBL	gene	3625296	3626045	.	-	.	ID=gene3342;Name=azo3286;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3286
AM406670.1	EMBL	CDS	3625296	3626045	.	-	0	ID=cds3282;Parent=gene3342;Dbxref=EnsemblGenomes-Gn:azo3286,EnsemblGenomes-Tr:CAL95902,GOA:A1KAP6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAP6,NCBI_GP:CAL95902.1;Name=CAL95902.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Similar to TREMBL:Q82SR3 (67%25 identity)%3B TREMBL:Q92NU9 (48%25 identity)%3B SWISSPROT:Q58206 (45%25 identity). InterPro (IPR003439): ABC transporter. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR003593): AAA ATPase. Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~Family membership;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL95902.1;transl_table=11
AM406670.1	EMBL	gene	3626090	3626872	.	+	.	ID=gene3343;Name=azo3287;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3287
AM406670.1	EMBL	CDS	3626090	3626872	.	+	0	ID=cds3283;Parent=gene3343;Dbxref=EnsemblGenomes-Gn:azo3287,EnsemblGenomes-Tr:CAL95903,InterPro:IPR006311,InterPro:IPR011220,UniProtKB/TrEMBL:A1KAP7,NCBI_GP:CAL95903.1;Name=CAL95903.1;Note=Conserved hypothetical secreted protein. Homology to NE2245 of Nitrosomonas europaea of 51%25 (tremble:Q82SR2). No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95903.1;transl_table=11
AM406670.1	EMBL	gene	3626917	3627633	.	+	.	ID=gene3344;Name=azo3288;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3288
AM406670.1	EMBL	CDS	3626917	3627633	.	+	0	ID=cds3284;Parent=gene3344;Dbxref=EnsemblGenomes-Gn:azo3288,EnsemblGenomes-Tr:CAL95904,GOA:A1KAP8,InterPro:IPR001279,UniProtKB/TrEMBL:A1KAP8,NCBI_GP:CAL95904.1;Name=CAL95904.1;Note=Putative exonuclease of the beta-lactamase fold involved in RNA processing%2C N-terminal fragment.%3B~Family membership;gbkey=CDS;product=exonuclease of the beta-lactamase fold involved in RNA processing;protein_id=CAL95904.1;transl_table=11
AM406670.1	EMBL	gene	3627672	3628322	.	+	.	ID=gene3345;Name=azo3289;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3289
AM406670.1	EMBL	CDS	3627672	3628322	.	+	0	ID=cds3285;Parent=gene3345;Dbxref=EnsemblGenomes-Gn:azo3289,EnsemblGenomes-Tr:CAL95905,GOA:A1KAP9,InterPro:IPR001279,InterPro:IPR011108,InterPro:IPR022712,UniProtKB/TrEMBL:A1KAP9,NCBI_GP:CAL95905.1;Name=CAL95905.1;Note=Putative exonuclease of the beta-lactamase fold involved in RNA processing%2C C-terminal fragment%3B~Family membership;gbkey=CDS;product=exonuclease of the beta-lactamase fold involved in RNA processing;protein_id=CAL95905.1;transl_table=11
AM406670.1	EMBL	gene	3628428	3629525	.	-	.	ID=gene3346;Name=azo3290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3290
AM406670.1	EMBL	CDS	3628428	3629525	.	-	0	ID=cds3286;Parent=gene3346;Dbxref=EnsemblGenomes-Gn:azo3290,EnsemblGenomes-Tr:CAL95906,GOA:A1KAQ0,InterPro:IPR001702,InterPro:IPR002299,InterPro:IPR023614,UniProtKB/TrEMBL:A1KAQ0,NCBI_GP:CAL95906.1;Name=CAL95906.1;Note=Major outer membrane protein P.IB precursor (Protein IB) (PIB) (Porin). Serves as a slightly cation selective porin. InterPro: General diffusion Gram-negative porins L12: ribosomal protein L7/L12%3B~Function unclear;gbkey=CDS;product=outer membrane porin protein precursor;protein_id=CAL95906.1;transl_table=11
AM406670.1	EMBL	gene	3629820	3630890	.	-	.	ID=gene3347;Name=azo3291;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3291
AM406670.1	EMBL	CDS	3629820	3630890	.	-	0	ID=cds3287;Parent=gene3347;Dbxref=EnsemblGenomes-Gn:azo3291,EnsemblGenomes-Tr:CAL95907,GOA:A1KAQ1,InterPro:IPR001702,InterPro:IPR002299,InterPro:IPR023614,UniProtKB/TrEMBL:A1KAQ1,NCBI_GP:CAL95907.1;Name=CAL95907.1;Note=Outer membrane porin protein 32 precursor (OMP32). Forms anion selective channels. InterPro: General diffusion Gram-negative porins 2A0310: amino acid permease (yeast)%3B~Function unclear;gbkey=CDS;product=outer membrane porin protein precursor;protein_id=CAL95907.1;transl_table=11
AM406670.1	EMBL	gene	3631171	3632025	.	+	.	ID=gene3348;Name=rpoH;gbkey=Gene;gene=rpoH;gene_biotype=protein_coding;locus_tag=azo3292
AM406670.1	EMBL	CDS	3631171	3632025	.	+	0	ID=cds3288;Parent=gene3348;Dbxref=EnsemblGenomes-Gn:azo3292,EnsemblGenomes-Tr:CAL95908,GOA:A1KAQ2,InterPro:IPR000943,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR009042,InterPro:IPR011991,InterPro:IPR012759,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:A1KAQ2,NCBI_GP:CAL95908.1;Name=CAL95908.1;Note=RNA polymerase sigma-32 factor. THE SIGMA FACTOR IS AN INITIATION FACTOR THAT PROMOTES ATTACHMENT OF THE RNA POLYMERASE TO SPECIFIC INITIATION SITES AND THEN IS RELEASED. THIS SIGMA FACTOR IS RESPONSIBLE FOR THE EXPRESSION OF HEAT SHOCK PROMOTERS. Similar to SWISSPROT: sprot|RP32_PSEAE (54%25 Pseudomonas aeruginosa%2C RNA polymerase sigma-32 factor) / sprot|RP32_ECOLI (51%25 Escherichia coli%2C RNA polymerase sigma-32 factor (heat shock regulatory protein f33.4)) InterPro: IPR009043 RNA polymerase%2C sigma subunit. Pfam: PF00140 Sigma-70 factor. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpoH;product=RNA polymerase sigma-32 factor;protein_id=CAL95908.1;transl_table=11
AM406670.1	EMBL	gene	3632080	3632682	.	-	.	ID=gene3349;Name=senC;gbkey=Gene;gene=senC;gene_biotype=protein_coding;locus_tag=azo3293
AM406670.1	EMBL	CDS	3632080	3632682	.	-	0	ID=cds3289;Parent=gene3349;Dbxref=EnsemblGenomes-Gn:azo3293,EnsemblGenomes-Tr:CAL95909,InterPro:IPR003782,InterPro:IPR012336,UniProtKB/TrEMBL:A1KAQ3,NCBI_GP:CAL95909.1;Name=CAL95909.1;Note=SCO2 protein homolog mitochondrial precursor. Acts as a copper chaperone transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2). InterPro: SCO1/SenC TREMBL:Q8Y2G3: 56%25 identity%2C 74%25 similarity InterPro:IPR003782%3B SCO1_SenC. Pfam: PF02630%3B SCO1-SenC dsbE: periplasmic protein thiol:disulf Presence of signal peptide (SignalP predicted) No TMH's present%3B~Family membership;gbkey=CDS;gene=senC;product=SCO1/SenC family protein;protein_id=CAL95909.1;transl_table=11
AM406670.1	EMBL	gene	3632697	3633596	.	-	.	ID=gene3350;Name=coxD;gbkey=Gene;gene=coxD;gene_biotype=protein_coding;locus_tag=azo3294
AM406670.1	EMBL	CDS	3632697	3633596	.	-	0	ID=cds3290;Parent=gene3350;Dbxref=EnsemblGenomes-Gn:azo3294,EnsemblGenomes-Tr:CAL95910,GOA:A1KAQ4,InterPro:IPR000537,InterPro:IPR006369,NCBI_GP:CAL95910.1;Name=CAL95910.1;Note=Putative protoheme IX farnesyltransferase (EC 2.5.1.-). Homology to coxD of Synechocystis sp of 39%25 (trembl|Q55207) Converts protoheme IX and farnesyl diphosphate to heme O (By similarity). InterPro: UbiA prenyltransferase (IPR000537) Pfam: UbiA prenyltransferase family no signalpeptide 9 TMHS%3B~High confidence in function and specificity;gbkey=CDS;gene=coxD;product=putative protoheme IX farnesyltransferase;protein_id=CAL95910.1;transl_table=11
AM406670.1	EMBL	gene	3633593	3634636	.	-	.	ID=gene3351;Name=azo3295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3295
AM406670.1	EMBL	CDS	3633593	3634636	.	-	0	ID=cds3291;Parent=gene3351;Dbxref=EnsemblGenomes-Gn:azo3295,EnsemblGenomes-Tr:CAL95911,GOA:A1KAQ5,InterPro:IPR003780,UniProtKB/TrEMBL:A1KAQ5,NCBI_GP:CAL95911.1;Name=CAL95911.1;Note=Putative Cytochrome aa3 oxidase assembly protein%2C42%25 Identity to TrEMBL%3BQ7P0G1%2C Q62F60. Has PF02628%2CCytochrome oxidase assembly protein%3B IPR003780%2CCOX15_CtaA%3B This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast (P40086).;gbkey=CDS;product=putative Cytochrome aa3 oxidase assembly protein;protein_id=CAL95911.1;transl_table=11
AM406670.1	EMBL	gene	3634633	3635286	.	-	.	ID=gene3352;Name=azo3296;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3296
AM406670.1	EMBL	CDS	3634633	3635286	.	-	0	ID=cds3292;Parent=gene3352;Dbxref=EnsemblGenomes-Gn:azo3296,EnsemblGenomes-Tr:CAL95912,UniProtKB/TrEMBL:A1KAQ6,NCBI_GP:CAL95912.1;Name=CAL95912.1;Note=Conserved hypothetical membrane protein. Homology to RS03338 of Ralstonia solanacearum of 36%25 (trembl|Q8Y2G6(SRS)). No domains predicted. No signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95912.1;transl_table=11
AM406670.1	EMBL	gene	3635261	3635983	.	-	.	ID=gene3353;Name=azo3297;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3297
AM406670.1	EMBL	CDS	3635261	3635983	.	-	0	ID=cds3293;Parent=gene3353;Dbxref=EnsemblGenomes-Gn:azo3297,EnsemblGenomes-Tr:CAL95913,GOA:A1KAQ7,InterPro:IPR002994,UniProtKB/TrEMBL:A1KAQ7,NCBI_GP:CAL95913.1;Name=CAL95913.1;Note=Conserved hypothetical secreted protein. Homology to NE1012 of N.europaea of 31%25 (tremble:Q82VQ4). No domains predicted. Signal peptide present. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95913.1;transl_table=11
AM406670.1	EMBL	gene	3636032	3636226	.	+	.	ID=gene3354;Name=azo3298;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3298
AM406670.1	EMBL	CDS	3636032	3636226	.	+	0	ID=cds3294;Parent=gene3354;Dbxref=EnsemblGenomes-Gn:azo3298,EnsemblGenomes-Tr:CAL95914,InterPro:IPR021313,UniProtKB/TrEMBL:A1KAQ8,NCBI_GP:CAL95914.1;Name=CAL95914.1;Note=Conserved hypothetical membrane protein. Homology to rs0336 of R. solanacearum of 53%25 (trembl|Q8Y2G8(SRS)). no domains predicted. signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95914.1;transl_table=11
AM406670.1	EMBL	gene	3636240	3637091	.	-	.	ID=gene3355;Name=coxC;gbkey=Gene;gene=coxC;gene_biotype=protein_coding;locus_tag=azo3299
AM406670.1	EMBL	CDS	3636240	3637091	.	-	0	ID=cds3295;Parent=gene3355;Dbxref=EnsemblGenomes-Gn:azo3299,EnsemblGenomes-Tr:CAL95915,GOA:A1KAQ9,InterPro:IPR000298,InterPro:IPR013833,InterPro:IPR024791,UniProtKB/TrEMBL:A1KAQ9,NCBI_GP:CAL95915.1;Name=CAL95915.1;Note=Cytochrome c oxidase polypeptide III Subunits I II and III form the functional core of the enzyme complex. InterPro: Cytochrome c oxidase subunit III%3B~High confidence in function and specificity;gbkey=CDS;gene=coxC;product=Cytochrome-c oxidase;protein_id=CAL95915.1;transl_table=11
AM406670.1	EMBL	gene	3637132	3637332	.	-	.	ID=gene3356;Name=azo3300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3300
AM406670.1	EMBL	CDS	3637132	3637332	.	-	0	ID=cds3296;Parent=gene3356;Dbxref=EnsemblGenomes-Gn:azo3300,EnsemblGenomes-Tr:CAL95916,InterPro:IPR021344,UniProtKB/TrEMBL:A1KAR0,NCBI_GP:CAL95916.1;Name=CAL95916.1;Note=Conserved hypothetical membrane protein%2C 73%25 similarity to TrEMBL%3BQ7WE10%2CPutative membrane protein [BB4828] [Bordetella bronchiseptica(Alcaligenes bronchisepticus). no signal peptide. 1 TMHs;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95916.1;transl_table=11
AM406670.1	EMBL	gene	3637322	3637897	.	-	.	ID=gene3357;Name=coxG;gbkey=Gene;gene=coxG;gene_biotype=protein_coding;locus_tag=azo3301
AM406670.1	EMBL	CDS	3637322	3637897	.	-	0	ID=cds3297;Parent=gene3357;Dbxref=EnsemblGenomes-Gn:azo3301,EnsemblGenomes-Tr:CAL95917,GOA:A1KAR1,InterPro:IPR007533,InterPro:IPR023471,UniProtKB/TrEMBL:A1KAR1,NCBI_GP:CAL95917.1;Name=CAL95917.1;Note=Cytochrome c oxidase assembly protein ctaG. Exerts its effect at some terminal stage of cytochrome c oxidase synthesis probably by being involved in the insertion of the copper B into subunit I (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=coxG;product=CoxG protein;protein_id=CAL95917.1;transl_table=11
AM406670.1	EMBL	gene	3637894	3638010	.	-	.	ID=gene3358;Name=azo3302;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3302
AM406670.1	EMBL	CDS	3637894	3638010	.	-	0	ID=cds3298;Parent=gene3358;Dbxref=EnsemblGenomes-Gn:azo3302,EnsemblGenomes-Tr:CAL95918,UniProtKB/TrEMBL:A1KAR2,NCBI_GP:CAL95918.1;Name=CAL95918.1;Note=Conserved hypothetical membrane protein. Homology to rsc0364 of R. solanacearum of 42%25 (trembl|Q8Y2H2) no domains predicted no signal peptide 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95918.1;transl_table=11
AM406670.1	EMBL	gene	3638035	3639612	.	-	.	ID=gene3359;Name=coxA;gbkey=Gene;gene=coxA;gene_biotype=protein_coding;locus_tag=azo3303
AM406670.1	EMBL	CDS	3638035	3639612	.	-	0	ID=cds3299;Parent=gene3359;Dbxref=EnsemblGenomes-Gn:azo3303,EnsemblGenomes-Tr:CAL95919,GOA:A1KAR3,InterPro:IPR000883,InterPro:IPR014241,InterPro:IPR023615,InterPro:IPR023616,UniProtKB/TrEMBL:A1KAR3,NCBI_GP:CAL95919.1;Name=CAL95919.1;Note=Probable cytochrome c oxidase%2C subunit I (EC 1.9.3.1) (Cytochrome AA3 subunit 1). Homology to coxA of B. japonicum of 55%25 (sprot|COX1_BRAJA(SRS)) cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. subunits 1- 3 form the functional core of the enzyme complex. co i is the catalytic subunit of the enzyme. electrons originating in cytochrome c are transferred via the copper a center of subunit 2 and heme a of subunit 1 to the bimetallic center formed by heme a3 and copper b. Pfam: Cytochrome c and quinol oxidase polypeptide no signal peptide 12 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=coxA;product=probable cytochrome c oxidase%2C subunit I;protein_id=CAL95919.1;transl_table=11
AM406670.1	EMBL	gene	3639657	3640799	.	-	.	ID=gene3360;Name=coxB;gbkey=Gene;gene=coxB;gene_biotype=protein_coding;locus_tag=azo3304
AM406670.1	EMBL	CDS	3639657	3640799	.	-	0	ID=cds3300;Parent=gene3360;Dbxref=EnsemblGenomes-Gn:azo3304,EnsemblGenomes-Tr:CAL95920,GOA:A1KAR4,InterPro:IPR001505,InterPro:IPR002429,InterPro:IPR008972,InterPro:IPR009056,InterPro:IPR011759,InterPro:IPR014222,UniProtKB/TrEMBL:A1KAR4,NCBI_GP:CAL95920.1;Name=CAL95920.1;Note=Conserved hypothetical cytochrome c oxidase%2Csubunit II. Homology to bb4831 of B. bronchiseptica of 60%25 (trembl|Q7WE07). SUBUNIT I AND II FORM THE FUNCTIONAL CORE OF THE ENZYME COMPLEX. ELECTRONS ORIGINATING IN CYTOCHROME C ARE TRANSFERRED VIA HEME A AND CU(A) TO THE BINUCLEAR CENTER FORMED BY HEME A3 AND CU(B). InterPro: Cytochrome c oxidase subunit II (IPR002429)%3B cytochrome c%2C class IC (IPR008168)%3B cytochrome%2C class I (IPR003088)%3B Cu(A) centre of cytochrome coxidase%2C subunit II and nitrous oxide reductase (IPR001505) Pfam: Cytochrome c oxidase subunit II%2C transmembran domain%3B cytochrome c oxidase subunit II%2Cperiplasmic domain%3B cytochrome c Tirgfam: ccoP: cytochrome c oxidase cbb3-type signal peptide 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=coxB;product=conserved hypothetical cytochrome c oxidase%2Csubunit II;protein_id=CAL95920.1;transl_table=11
AM406670.1	EMBL	gene	3641189	3641698	.	-	.	ID=gene3361;Name=waaE1;gbkey=Gene;gene=waaE1;gene_biotype=protein_coding;locus_tag=azo3305
AM406670.1	EMBL	CDS	3641189	3641698	.	-	0	ID=cds3301;Parent=gene3361;Dbxref=EnsemblGenomes-Gn:azo3305,EnsemblGenomes-Tr:CAL95921,GOA:A1KAR5,InterPro:IPR004821,InterPro:IPR011914,InterPro:IPR014729,UniProtKB/TrEMBL:A1KAR5,NCBI_GP:CAL95921.1;Name=CAL95921.1;Note=ADP-heptose synthase (EC 2.7.-.-). cyt_tran_rel: cytidyltransferase-related%3B~High confidence in function and specificity;gbkey=CDS;gene=waaE1;product=ADP-heptose synthase;protein_id=CAL95921.1;transl_table=11
AM406670.1	EMBL	gene	3641777	3643381	.	-	.	ID=gene3362;Name=azo3306;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3306
AM406670.1	EMBL	CDS	3641777	3643381	.	-	0	ID=cds3302;Parent=gene3362;Dbxref=EnsemblGenomes-Gn:azo3306,EnsemblGenomes-Tr:CAL95922,GOA:A1KAR6,InterPro:IPR003841,UniProtKB/TrEMBL:A1KAR6,NCBI_GP:CAL95922.1;Name=CAL95922.1;Note=Conserved hypothetical Na+-dependent phosphate transporter protein. Homolg to Bacteroides thetaiotaomicron. TREMBL:Q8A4R9 InterPro:IPR003841%3B Na/Pi_cotranspt.IPR004633%3B NaPi_cotransptII. Pfam:PF02690%3B Na_Pi_cotrans%3B 1. SignalP: present TMhelix:8 present. InterPro: Na+/Pi-cotransporter NaPi_cotrn_rel: Na/Pi cotransporter II Hypothetical protein yjbB.%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95922.1;transl_table=11
AM406670.1	EMBL	gene	3643550	3645082	.	-	.	ID=gene3363;Name=cat1;gbkey=Gene;gene=cat1;gene_biotype=protein_coding;locus_tag=azo3307
AM406670.1	EMBL	CDS	3643550	3645082	.	-	0	ID=cds3303;Parent=gene3363;Dbxref=EnsemblGenomes-Gn:azo3307,EnsemblGenomes-Tr:CAL95923,GOA:A1KAR7,InterPro:IPR003702,InterPro:IPR017821,InterPro:IPR026888,UniProtKB/TrEMBL:A1KAR7,NCBI_GP:CAL95923.1;Name=CAL95923.1;Note=Probable coenzyme A transferase. Homology to cat1 of C. kluyveri of 51%25 (sprot|CAT1_CLOKL). Pfam: Acetyl-CoA hydrolase/transferase no signal peptide no TMHs tal_mycobact: transaldolase%3B~Family membership;gbkey=CDS;gene=cat1;product=probable coenzyme A transferase;protein_id=CAL95923.1;transl_table=11
AM406670.1	EMBL	gene	3645353	3646273	.	-	.	ID=gene3364;Name=azo3308;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3308
AM406670.1	EMBL	CDS	3645353	3646273	.	-	0	ID=cds3304;Parent=gene3364;Dbxref=EnsemblGenomes-Gn:azo3308,EnsemblGenomes-Tr:CAL95924,GOA:A1KAR8,InterPro:IPR000551,InterPro:IPR003759,InterPro:IPR006158,InterPro:IPR009061,UniProtKB/TrEMBL:A1KAR8,NCBI_GP:CAL95924.1;Name=CAL95924.1;Note=Putative MerR-family transcriptional regulator. InterPro: IPR000551 HTH_MerR. HTH reporting nucleic acid binding motif. h_aconitase: homoaconitase;gbkey=CDS;product=putative MerR-family transcriptional regulator;protein_id=CAL95924.1;transl_table=11
AM406670.1	EMBL	gene	3646563	3647906	.	+	.	ID=gene3365;Name=azo3309;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3309
AM406670.1	EMBL	CDS	3646563	3647906	.	+	0	ID=cds3305;Parent=gene3365;Dbxref=EnsemblGenomes-Gn:azo3309,EnsemblGenomes-Tr:CAL95925,UniProtKB/TrEMBL:A1KAR9,NCBI_GP:CAL95925.1;Name=CAL95925.1;Note=Conserved hypothetical amine oxidoreductase. Homology to atu1977 of A. tumefaciens of 47%25 (trembl|Q8UDY9). Pfam: Flavine containing amine oxidoreductase no signal peptide 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical amine oxidoreductase;protein_id=CAL95925.1;transl_table=11
AM406670.1	EMBL	gene	3647986	3648756	.	+	.	ID=gene3366;Name=azo3310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3310
AM406670.1	EMBL	CDS	3647986	3648756	.	+	0	ID=cds3306;Parent=gene3366;Dbxref=EnsemblGenomes-Gn:azo3310,EnsemblGenomes-Tr:CAL95926,InterPro:IPR010775,UniProtKB/TrEMBL:A1KAS0,NCBI_GP:CAL95926.1;Name=CAL95926.1;Note=Conserved hypothetical protein. Homology to CV3225 of C.violaceum of 50%25 (trembl:Q7NPR5). Has PF07103%2CProtein of unknown function (DUF1365)%3BIPR010775 %3BThis family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown. No signal peptide or TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95926.1;transl_table=11
AM406670.1	EMBL	gene	3648753	3650036	.	+	.	ID=gene3367;Name=cfaA;gbkey=Gene;gene=cfaA;gene_biotype=protein_coding;locus_tag=azo3311
AM406670.1	EMBL	CDS	3648753	3650036	.	+	0	ID=cds3307;Parent=gene3367;Dbxref=EnsemblGenomes-Gn:azo3311,EnsemblGenomes-Tr:CAL95927,GOA:A1KAS1,InterPro:IPR003333,InterPro:IPR029063,UniProtKB/TrEMBL:A1KAS1,NCBI_GP:CAL95927.1;Name=CAL95927.1;Note=Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase). InterPro: Cyclopropane-fatty-acyl-phospholipid synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=cfaA;product=cyclopropane-fatty-acyl-phospholipid synthase;protein_id=CAL95927.1;transl_table=11
AM406670.1	EMBL	gene	3650039	3650623	.	+	.	ID=gene3368;Name=azo3312;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3312
AM406670.1	EMBL	CDS	3650039	3650623	.	+	0	ID=cds3308;Parent=gene3368;Dbxref=EnsemblGenomes-Gn:azo3312,EnsemblGenomes-Tr:CAL95928,UniProtKB/TrEMBL:A1KAS2,NCBI_GP:CAL95928.1;Name=CAL95928.1;Note=Conserved hypothetical secreted protein. Homology to PP2729 of P.putida of 36%25 (tremble:Q88JC0). No domains predicted. Signal peptide present. NO TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95928.1;transl_table=11
AM406670.1	EMBL	gene	3650639	3651958	.	+	.	ID=gene3369;Name=azo3313;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3313
AM406670.1	EMBL	CDS	3650639	3651958	.	+	0	ID=cds3309;Parent=gene3369;Dbxref=EnsemblGenomes-Gn:azo3313,EnsemblGenomes-Tr:CAL95929,InterPro:IPR016196,UniProtKB/TrEMBL:A1KAS3,NCBI_GP:CAL95929.1;Name=CAL95929.1;Note=Integral membrane protein.Belongs to the Na/galactoside symporter family. 20%25 MFS.IPR001927%3B Na/Gal_symport. TIGRFAMs:TIGR00792%3B gph%3B 1. TMHelix:12.%3B~Function unclear;gbkey=CDS;product=putative symporter protein;protein_id=CAL95929.1;transl_table=11
AM406670.1	EMBL	gene	3651955	3652512	.	+	.	ID=gene3370;Name=azo3314;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3314
AM406670.1	EMBL	CDS	3651955	3652512	.	+	0	ID=cds3310;Parent=gene3370;Dbxref=EnsemblGenomes-Gn:azo3314,EnsemblGenomes-Tr:CAL95930,InterPro:IPR024409,UniProtKB/TrEMBL:A1KAS4,NCBI_GP:CAL95930.1;Name=CAL95930.1;Note=Conserved hypothetical secreted protein. Homology to PP2730 of P.putida of 48%25 (tremble:Q88JB9). No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL95930.1;transl_table=11
AM406670.1	EMBL	gene	3652517	3653299	.	+	.	ID=gene3371;Name=azo3315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3315
AM406670.1	EMBL	CDS	3652517	3653299	.	+	0	ID=cds3311;Parent=gene3371;Dbxref=EnsemblGenomes-Gn:azo3315,EnsemblGenomes-Tr:CAL95931,GOA:A1KAS5,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:A1KAS5,NCBI_GP:CAL95931.1;Name=CAL95931.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q92PV6 (39 %25 identity)%3B TREMBL:Q88JB2 (33%25 identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase.%3B~Specificity unclear;gbkey=CDS;product=Short-chain dehydrogenase family protein;protein_id=CAL95931.1;transl_table=11
AM406670.1	EMBL	gene	3653304	3653753	.	+	.	ID=gene3372;Name=azo3316;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3316
AM406670.1	EMBL	CDS	3653304	3653753	.	+	0	ID=cds3312;Parent=gene3372;Dbxref=EnsemblGenomes-Gn:azo3316,EnsemblGenomes-Tr:CAL95932,InterPro:IPR009959,UniProtKB/TrEMBL:A1KAS6,NCBI_GP:CAL95932.1;Name=CAL95932.1;Note=Conserved hypothetical protein. Homology to CV3228 of C.violaceum of 40%25 (trembl:Q7NT36). No domains predicted. No Signal peptide present. No TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95932.1;transl_table=11
AM406670.1	EMBL	gene	3653743	3654726	.	-	.	ID=gene3373;Name=yhdH;gbkey=Gene;gene=yhdH;gene_biotype=protein_coding;locus_tag=azo3317
AM406670.1	EMBL	CDS	3653743	3654726	.	-	0	ID=cds3313;Parent=gene3373;Dbxref=EnsemblGenomes-Gn:azo3317,EnsemblGenomes-Tr:CAL95933,GOA:A1KAS7,InterPro:IPR002085,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR014188,InterPro:IPR016040,UniProtKB/TrEMBL:A1KAS7,NCBI_GP:CAL95933.1;Name=CAL95933.1;Note=TREMBL:Q881C6:69%25 identity%3B 83%25 similarity. Alcohol dehydrogenase (EC: 1.1.1.1) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD: Ethanol + NAD %3D Acetaldehyde + NADH Protein yhdH. InterPro:IPR002085%3B Adh_zn_family. Pfam:PF00107%3B ADH_zinc_N%3B FAD binding domain InterPro: Zinc-containing alcohol dehydrogenase superfamily TIGRFAM:tdh: L-threonine 3-dehydrogenase%3B~High confidence in function and specificity;gbkey=CDS;gene=yhdH;product=zinc-binding alcohol dehydrogenase;protein_id=CAL95933.1;transl_table=11
AM406670.1	EMBL	gene	3654928	3656775	.	+	.	ID=gene3374;Name=recQ;gbkey=Gene;gene=recQ;gene_biotype=protein_coding;locus_tag=azo3318
AM406670.1	EMBL	CDS	3654928	3656775	.	+	0	ID=cds3314;Parent=gene3374;Dbxref=EnsemblGenomes-Gn:azo3318,EnsemblGenomes-Tr:CAL95934,GOA:A1KAS8,InterPro:IPR001650,InterPro:IPR002121,InterPro:IPR004589,InterPro:IPR006293,InterPro:IPR010997,InterPro:IPR011545,InterPro:IPR011991,InterPro:IPR014001,InterPro:IPR018982,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAS8,NCBI_GP:CAL95934.1;Name=CAL95934.1;Note=ATP-dependent DNA helicase recQ (EC 3.6.1.-). INVOLVED IN THE RECF RECOMBINATION PATHWAY%3B ITS GENE EXPRESSION IS UNDER THE REGULATION OF THE SOS SYSTEM. IT IS A DNA HELICASE. recq: ATP-dependent DNA helicase RecQ.%3B~High confidence in function and specificity;gbkey=CDS;gene=recQ;product=ATP-dependent DNA helicase;protein_id=CAL95934.1;transl_table=11
AM406670.1	EMBL	gene	3656851	3657195	.	-	.	ID=gene3375;Name=fkbP;gbkey=Gene;gene=fkbP;gene_biotype=protein_coding;locus_tag=azo3319
AM406670.1	EMBL	CDS	3656851	3657195	.	-	0	ID=cds3315;Parent=gene3375;Dbxref=EnsemblGenomes-Gn:azo3319,EnsemblGenomes-Tr:CAL95935,GOA:A1KAS9,InterPro:IPR001179,InterPro:IPR023566,UniProtKB/TrEMBL:A1KAS9,NCBI_GP:CAL95935.1;Name=CAL95935.1;Note=Peptidyl-prolyl cis-trans isomerase. Homology to fkbP of N. meningitidis of 69%25 (sprot|FKBP_NEIMB) PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. InterPro: FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)(IPR001179) Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fkbP;product=peptidyl-prolyl cis-trans isomerase;protein_id=CAL95935.1;transl_table=11
AM406670.1	EMBL	gene	3657267	3657827	.	-	.	ID=gene3376;Name=msrA;gbkey=Gene;gene=msrA;gene_biotype=protein_coding;locus_tag=azo3320
AM406670.1	EMBL	CDS	3657267	3657827	.	-	0	ID=cds3316;Parent=gene3376;Dbxref=EnsemblGenomes-Gn:azo3320,EnsemblGenomes-Tr:CAL95936,GOA:A1KAT0,InterPro:IPR002569,InterPro:IPR028427,UniProtKB/TrEMBL:A1KAT0,NCBI_GP:CAL95936.1;Name=CAL95936.1;Note=Putative peptide methionine sulfoxide reductase. Homology to msrA of E. coli of 37%25 (SWISSPROT:MSRA_ECOLI) Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (By similarity). InterPro: Peptide methionine sulfoxide reductase (IPR002569) Pfam: Peptide methionine sulfoxide reductase Tigrfam: msrA: peptide methionine sulfoxide reductase no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=msrA;product=putative peptide methionine sulfoxide reductase;protein_id=CAL95936.1;transl_table=11
AM406670.1	EMBL	gene	3657957	3661868	.	-	.	ID=gene3377;Name=azo3321;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3321
AM406670.1	EMBL	CDS	3657957	3661868	.	-	0	ID=cds3317;Parent=gene3377;Dbxref=EnsemblGenomes-Gn:azo3321,EnsemblGenomes-Tr:CAL95937,InterPro:IPR007452,UniProtKB/TrEMBL:A1KAT1,NCBI_GP:CAL95937.1;Name=CAL95937.1;Note=Conserved hypothetical membrane protein. Homology to rsc2383 of R. solanacearum of 31%25 (trembl|Q8XWT7(SRS)). no domains predicted .no signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95937.1;transl_table=11
AM406670.1	EMBL	gene	3661872	3662666	.	-	.	ID=gene3378;Name=trpC;gbkey=Gene;gene=trpC;gene_biotype=protein_coding;locus_tag=azo3322
AM406670.1	EMBL	CDS	3661872	3662666	.	-	0	ID=cds3318;Parent=gene3378;Dbxref=EnsemblGenomes-Gn:azo3322,EnsemblGenomes-Tr:CAL95938,GOA:A1KAT2,InterPro:IPR001468,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR013798,NCBI_GP:CAL95938.1;Name=CAL95938.1;Note=Indole-3-glycerol phosphate synthase (IGPS). catalytic activity:1-(2-carboxyphenylamino)-1-deoxy-d-ribulose 5-phosphate %3D 1-(indol-3-yl)glycerol 3-phosphate + co(2) + h(2)o. pathway: tryptophan biosynthesis%3B fourth step. InterPro: Indole-3-glycerol phosphate synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=trpC;product=Indole-3-glycerol-phosphate synthase;protein_id=CAL95938.1;transl_table=11
AM406670.1	EMBL	gene	3662666	3663703	.	-	.	ID=gene3379;Name=trpD;gbkey=Gene;gene=trpD;gene_biotype=protein_coding;locus_tag=azo3323
AM406670.1	EMBL	CDS	3662666	3663703	.	-	0	ID=cds3319;Parent=gene3379;Dbxref=EnsemblGenomes-Gn:azo3323,EnsemblGenomes-Tr:CAL95939,GOA:A1KAT3,InterPro:IPR000312,InterPro:IPR005940,InterPro:IPR017459,NCBI_GP:CAL95939.1;Name=CAL95939.1;Note=Anthranilate phosphoribosyltransferase. catalytic activity: anthranilate + phosphoribosyldiphosphate %3D n-5'-phosphoribosyl-anthranilate + diphosphate. pathway: tryptophan biosynthesis%3B second step. InterPro: Glycosyl transferase family%3B~High confidence in function and specificity;gbkey=CDS;gene=trpD;product=1%2C4-alpha-glucan branching enzyme;protein_id=CAL95939.1;transl_table=11
AM406670.1	EMBL	gene	3663719	3664306	.	-	.	ID=gene3380;Name=trpG;gbkey=Gene;gene=trpG;gene_biotype=protein_coding;locus_tag=azo3324
AM406670.1	EMBL	CDS	3663719	3664306	.	-	0	ID=cds3320;Parent=gene3380;Dbxref=EnsemblGenomes-Gn:azo3324,EnsemblGenomes-Tr:CAL95940,GOA:A1KAT4,InterPro:IPR006221,InterPro:IPR017926,InterPro:IPR029062,UniProtKB/TrEMBL:A1KAT4,NCBI_GP:CAL95940.1;Name=CAL95940.1;Note=Anthranilate synthase component II (Glutamine amido-transferase). catalytic activity: chorismate + l-glutamine %3D anthranilate + pyruvate + l-glutamate. pathway: tryptophan biosynthesis%3B first step. TIGRFAM: trpG_papA: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=trpG;product=anthranilate synthase;protein_id=CAL95940.1;transl_table=11
AM406670.1	EMBL	gene	3664662	3666134	.	-	.	ID=gene3381;Name=trpE;gbkey=Gene;gene=trpE;gene_biotype=protein_coding;locus_tag=azo3325
AM406670.1	EMBL	CDS	3664662	3666134	.	-	0	ID=cds3321;Parent=gene3381;Dbxref=EnsemblGenomes-Gn:azo3325,EnsemblGenomes-Tr:CAL95941,GOA:A1KAT5,InterPro:IPR005256,InterPro:IPR005801,InterPro:IPR006805,InterPro:IPR015890,InterPro:IPR019999,UniProtKB/TrEMBL:A1KAT5,NCBI_GP:CAL95941.1;Name=CAL95941.1;Note=Anthranilate synthase component I. catalytic activity: chorismate + l-glutamine %3D anthranilate + pyruvate + l-glutamate. pathway: tryptophan biosynthesis%3B first step. InterPro: Anthranilate synthase component I and chorismate binding enzyme TIGRFAM: pabB: para-aminobenzoate synthase component I%3B~High confidence in function and specificity;gbkey=CDS;gene=trpE;product=anthranilate synthase;protein_id=CAL95941.1;transl_table=11
AM406670.1	EMBL	gene	3666394	3667065	.	-	.	ID=gene3382;Name=cbbZ;gbkey=Gene;gene=cbbZ;gene_biotype=protein_coding;locus_tag=azo3326
AM406670.1	EMBL	CDS	3666394	3667065	.	-	0	ID=cds3322;Parent=gene3382;Dbxref=EnsemblGenomes-Gn:azo3326,EnsemblGenomes-Tr:CAL95942,GOA:A1KAT6,InterPro:IPR006346,InterPro:IPR006439,InterPro:IPR023198,InterPro:IPR023214,UniProtKB/TrEMBL:A1KAT6,NCBI_GP:CAL95942.1;Name=CAL95942.1;Note=Phosphoglycolate phosphatase 1 (EC 3.1.3.18) (PGP 1). TREMBL:Q7W391: 50%25 identity%2C 65%25 similarity. catalytic activity: 2-phosphoglycolate + h(2)o %3D glycolate + phosphate. similarity:belongs to the cbby/cbbz/gph/yieh family. InterPro: Haloacid dehalogenase/epoxide hydrolase family InterPro:IPR006402%3B HAD-SF-IA-v3. IPR006439%3B HAD_SF_A_v1. IPR005833%3B Hlgnase/hydrlase. Pfam PF00702%3B Hydrolase%3B 1. PRINTS PR00413%3B HADHALOGNASE. TIGRFAMs:TIGR01549%3B HAD-SF-IA-v1%3B 1 hstdl_phs_rel: histidinol phosphatase-r%3B~High confidence in function and specificity;gbkey=CDS;gene=cbbZ;product=probable phosphoglycolate phosphatase;protein_id=CAL95942.1;transl_table=11
AM406670.1	EMBL	gene	3667075	3667776	.	-	.	ID=gene3383;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;locus_tag=azo3327
AM406670.1	EMBL	CDS	3667075	3667776	.	-	0	ID=cds3323;Parent=gene3383;Dbxref=EnsemblGenomes-Gn:azo3327,EnsemblGenomes-Tr:CAL95943,GOA:A1KAT7,InterPro:IPR000056,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR026019,UniProtKB/TrEMBL:A1KAT7,NCBI_GP:CAL95943.1;Name=CAL95943.1;Note=Ribulose-phosphate 3-epimerase(also known as pentose-5-phosphate 3-epimerase%2C PPE or Rpe)%2C is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. 71%25Ribul_P_3_epim. Pfam:PF00834%3B Ribul_P_3_epim%3B 1. TIGRFAMs:TIGR01163%3B rpe%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpe;product=putative ribulose-phosphate 3-epimerase;protein_id=CAL95943.1;transl_table=11
AM406670.1	EMBL	gene	3667833	3670193	.	-	.	ID=gene3384;Name=azo3328;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3328
AM406670.1	EMBL	CDS	3667833	3670193	.	-	0	ID=cds3324;Parent=gene3384;Dbxref=EnsemblGenomes-Gn:azo3328,EnsemblGenomes-Tr:CAL95944,GOA:A1KAT8,InterPro:IPR001482,InterPro:IPR003018,InterPro:IPR003593,InterPro:IPR007831,InterPro:IPR027417,InterPro:IPR029016,UniProtKB/TrEMBL:A1KAT8,NCBI_GP:CAL95944.1;Name=CAL95944.1;Note=General secretion pathway protein E%2C%3B~Specificity unclear;gbkey=CDS;product=general secretion pathway protein E;protein_id=CAL95944.1;transl_table=11
AM406670.1	EMBL	gene	3670262	3670960	.	-	.	ID=gene3385;Name=azo3329;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3329
AM406670.1	EMBL	CDS	3670262	3670960	.	-	0	ID=cds3325;Parent=gene3385;Dbxref=EnsemblGenomes-Gn:azo3329,EnsemblGenomes-Tr:CAL95945,GOA:A1KAT9,InterPro:IPR000396,InterPro:IPR001279,UniProtKB/TrEMBL:A1KAT9,NCBI_GP:CAL95945.1;Name=CAL95945.1;Note=Probable 35-cyclic-nucleotide phosphodiesterase precursor (EC 3.1.4.17) (PDEase) (3:5-CNP). TREMBL:Q8ZD92:28%25 identity%2C 47%25 similarity InterPro%3B IPR001279%3B Blactmase-like. IPR000396%3B Pdiesterase2. Pfam: PF00753%3B Lactamase_B No transmembrane helices TIGR00010: deoxyribonuclease TatD fami%3B~Function unclear;gbkey=CDS;product=putative 3'%2C5'-cyclic-nucleotide phosphodiesterase;protein_id=CAL95945.1;transl_table=11
AM406670.1	EMBL	gene	3671156	3671920	.	-	.	ID=gene3386;Name=azo3330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3330
AM406670.1	EMBL	CDS	3671156	3671920	.	-	0	ID=cds3326;Parent=gene3386;Dbxref=EnsemblGenomes-Gn:azo3330,EnsemblGenomes-Tr:CAL95946,InterPro:IPR000253,InterPro:IPR008984,UniProtKB/TrEMBL:A1KAU0,NCBI_GP:CAL95946.1;Name=CAL95946.1;Note=Conserved hypothetical protein which may be involved into signal transduction processes. Important Domain: Pfam:PF00498 FHA domain. The forkhead-associated (FHA) domain is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. The domain is present in a diverse range of proteins%2C such as kinases%2C phosphatases%2C kinesins%2C transcription factors%2CRNA-binding proteins and metabolic enzymes.;gbkey=CDS;product=FHA-domain containing protein;protein_id=CAL95946.1;transl_table=11
AM406670.1	EMBL	gene	3671969	3672724	.	-	.	ID=gene3387;Name=pppL;gbkey=Gene;gene=pppL;gene_biotype=protein_coding;locus_tag=azo3331
AM406670.1	EMBL	CDS	3671969	3672724	.	-	0	ID=cds3327;Parent=gene3387;Dbxref=EnsemblGenomes-Gn:azo3331,EnsemblGenomes-Tr:CAL95947,GOA:A1KAU1,InterPro:IPR001932,InterPro:IPR015655,UniProtKB/TrEMBL:A1KAU1,NCBI_GP:CAL95947.1;Name=CAL95947.1;Note=Putative phosphoprotein phosphatase%2C%3B~Family membership;gbkey=CDS;gene=pppL;product=putative phosphoprotein phosphatase;protein_id=CAL95947.1;transl_table=11
AM406670.1	EMBL	gene	3672838	3673731	.	-	.	ID=gene3388;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;locus_tag=azo3332
AM406670.1	EMBL	CDS	3672838	3673731	.	-	0	ID=cds3328;Parent=gene3388;Dbxref=EnsemblGenomes-Gn:azo3332,EnsemblGenomes-Tr:CAL95948,GOA:A1KAU2,InterPro:IPR003781,InterPro:IPR005810,InterPro:IPR005811,InterPro:IPR016040,InterPro:IPR016102,InterPro:IPR017440,UniProtKB/TrEMBL:A1KAU2,NCBI_GP:CAL95948.1;Name=CAL95948.1;Note=Probable succinyl-CoA synthetase%2C alpha chain. Homology to sucD of E. coli of 54%25 (srot:SUCD_ECOLI) CATALYTIC ACTIVITY: ATP + succinate + CoA %3D ADP + succinyl-CoA + phosphate. Succinyl-CoA is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle%2C coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits InterPro: ATP-citrate lyase/succinyl-CoA ligases (IPR005809) Pfam: CoA binding domain%3B Co-ligase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=sucD;product=probable succinyl-CoA synthetase%2C alpha chain;protein_id=CAL95948.1;transl_table=11
AM406670.1	EMBL	gene	3673743	3674903	.	-	.	ID=gene3389;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=azo3333
AM406670.1	EMBL	CDS	3673743	3674903	.	-	0	ID=cds3329;Parent=gene3389;Dbxref=EnsemblGenomes-Gn:azo3333,EnsemblGenomes-Tr:CAL95949,GOA:A1KAU3,InterPro:IPR005809,InterPro:IPR005811,InterPro:IPR011761,InterPro:IPR013650,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016102,InterPro:IPR017866,NCBI_GP:CAL95949.1;Name=CAL95949.1;Note=Probable succinyl-CoA synthetase%2C beta chain. Homology to sucC of E. coli of 51%25 (sprot|SUCC_ECOLI) CATALYTIC ACTIVITY: ATP + succinate + CoA %3D ADP + succinyl-CoA + phosphate. Succinyl-CoA is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle%2C coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits Pfam: ATP-grasp domain%3B~High confidence in function and specificity;gbkey=CDS;gene=sucC;product=probable succinyl-CoA synthetase%2C beta chain;protein_id=CAL95949.1;transl_table=11
AM406670.1	EMBL	gene	3675151	3675705	.	-	.	ID=gene3390;Name=azo3334;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3334
AM406670.1	EMBL	CDS	3675151	3675705	.	-	0	ID=cds3330;Parent=gene3390;Dbxref=EnsemblGenomes-Gn:azo3334,EnsemblGenomes-Tr:CAL95950,InterPro:IPR021312,UniProtKB/TrEMBL:A1KAU4,NCBI_GP:CAL95950.1;Name=CAL95950.1;Note=Conserved hypothetical protein. Homology to BP2542 of B.pertussis of 50%25 (trembl:Q7VVU4). No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95950.1;transl_table=11
AM406670.1	EMBL	gene	3675922	3677832	.	+	.	ID=gene3391;Name=fimV2;gbkey=Gene;gene=fimV2;gene_biotype=protein_coding;locus_tag=azo3335
AM406670.1	EMBL	CDS	3675922	3677832	.	+	0	ID=cds3331;Parent=gene3391;Dbxref=EnsemblGenomes-Gn:azo3335,EnsemblGenomes-Tr:CAL95951,UniProtKB/TrEMBL:A1KAU5,NCBI_GP:CAL95951.1;Name=CAL95951.1;Note=In Pseudomonas aeruginosa%2C FimV is probable involved in remodelling of the peptidoglycan layer to enable assembly of the type IV fimbrial structure and machinery. And it is also required for twitching motility. Similar to trembl|O87015 (26%25). Pfam (PF05489): Phage Tail Protein X SignalP reporting Signal peptide%3B~Function unclear;gbkey=CDS;gene=fimV2;product=putative type 4 pilus biogenesis;protein_id=CAL95951.1;transl_table=11
AM406670.1	EMBL	gene	3677837	3678592	.	-	.	ID=gene3392;Name=azo3336;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3336
AM406670.1	EMBL	CDS	3677837	3678592	.	-	0	ID=cds3332;Parent=gene3392;Dbxref=EnsemblGenomes-Gn:azo3336,EnsemblGenomes-Tr:CAL95952,GOA:A1KAU6,InterPro:IPR002678,UniProtKB/TrEMBL:A1KAU6,NCBI_GP:CAL95952.1;Name=CAL95952.1;Note=Conserved hypothetical protein%2CybgI%2C 48%25 identity(67%25 similarity) to SwissProt%3BP75743(E.coli)SP|Q8XFW7. SwissProt%3BQ8XVA0(58%25 identity)Ralstonia solanacearum. TrEMBL%3BQ82UH6(53%25 identity)Nitrosomonas europaea. Has PF01784%2C NIF3 (NGG1p interacting factor 3)%3BIPR002678%2C DUF34%3B This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex%2C the exact function of this interaction is unknown.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95952.1;transl_table=11
AM406670.1	EMBL	gene	3678696	3679862	.	+	.	ID=gene3393;Name=algW;gbkey=Gene;gene=algW;gene_biotype=protein_coding;locus_tag=azo3337
AM406670.1	EMBL	CDS	3678696	3679862	.	+	0	ID=cds3333;Parent=gene3393;Dbxref=EnsemblGenomes-Gn:azo3337,EnsemblGenomes-Tr:CAL95953,GOA:A1KAU7,InterPro:IPR001478,InterPro:IPR001940,InterPro:IPR009003,InterPro:IPR011782,UniProtKB/TrEMBL:A1KAU7,NCBI_GP:CAL95953.1;Name=CAL95953.1;Note=Probable serine protease AlgW. Homology to algW of P. aeruginosa of 48%25 (trembl|Q51374). InterPro: Serine proteases trypsin family (IPR001254)%3B PDZ domain (Also known as DHR or GLGF) (IPR001478)%3B HtrA/DegQ protease family (IPR001940) Pfam: PDZ domain (Also known as DHR or GLGF)%3B Trypsin no signal peptide 1 TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=algW;product=probable serine protease AlgW;protein_id=CAL95953.1;transl_table=11
AM406670.1	EMBL	gene	3679908	3680675	.	-	.	ID=gene3394;Name=tatC;gbkey=Gene;gene=tatC;gene_biotype=protein_coding;locus_tag=azo3338
AM406670.1	EMBL	CDS	3679908	3680675	.	-	0	ID=cds3334;Parent=gene3394;Dbxref=EnsemblGenomes-Gn:azo3338,EnsemblGenomes-Tr:CAL95954,GOA:A1KAU8,InterPro:IPR002033,UniProtKB/TrEMBL:A1KAU8,NCBI_GP:CAL95954.1;Name=CAL95954.1;Note=Sec-independent protein translocase protein tatC. Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif S/T-R-R-X-F-L-K. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs)%2C and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic 2a6401s02: Sec-independent periplasmic Pfam: MttB family UPF0032 propable 6 TMHs%2C no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=tatC;product=probable Sec-independent protein translocase protein;protein_id=CAL95954.1;transl_table=11
AM406670.1	EMBL	gene	3680681	3681109	.	-	.	ID=gene3395;Name=tatB;gbkey=Gene;gene=tatB;gene_biotype=protein_coding;locus_tag=azo3339
AM406670.1	EMBL	CDS	3680681	3681109	.	-	0	ID=cds3335;Parent=gene3395;Dbxref=EnsemblGenomes-Gn:azo3339,EnsemblGenomes-Tr:CAL95955,GOA:A1KAU9,InterPro:IPR003369,InterPro:IPR003998,InterPro:IPR018448,NCBI_GP:CAL95955.1;Name=CAL95955.1;Note=Sec-independent protein translocase protein tatB. Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif S/T-R-R-X-F-L-K. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export. no signal peptide probable TMHs: 1 TatB is essential for the secretion of these specific proteins%2C and forms a scaffold upon which TatC assembles in the membrane. Deletion studies have shown that it is crucial in the forming of the TAT complex%2C and is therefore necessary for the correct working of the system.%3B~High confidence in function and specificity;gbkey=CDS;gene=tatB;product=putative Sec-independent protein translocase protein;protein_id=CAL95955.1;transl_table=11
AM406670.1	EMBL	gene	3681177	3681410	.	-	.	ID=gene3396;Name=tatA;gbkey=Gene;gene=tatA;gene_biotype=protein_coding;locus_tag=azo3340
AM406670.1	EMBL	CDS	3681177	3681410	.	-	0	ID=cds3336;Parent=gene3396;Dbxref=EnsemblGenomes-Gn:azo3340,EnsemblGenomes-Tr:CAL95956,GOA:A1KAV0,InterPro:IPR003369,InterPro:IPR006312,NCBI_GP:CAL95956.1;Name=CAL95956.1;Note=Sec-independent protein translocase protein tatA/E homolog. Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif S/T-R-R-X-F-L-K. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export (By similarity). InterPro: mttA/Hcf106 family no signal peptide probable TMHs: 1%3B~High confidence in function and specificity;gbkey=CDS;gene=tatA;product=propable Sec-independent protein translocase protein;protein_id=CAL95956.1;transl_table=11
AM406670.1	EMBL	gene	3681361	3681534	.	+	.	ID=gene3397;Name=azo3341;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3341
AM406670.1	EMBL	CDS	3681361	3681534	.	+	0	ID=cds3337;Parent=gene3397;Dbxref=EnsemblGenomes-Gn:azo3341,EnsemblGenomes-Tr:CAL95957,UniProtKB/TrEMBL:A1KAV1,NCBI_GP:CAL95957.1;Name=CAL95957.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL95957.1;transl_table=11
AM406670.1	EMBL	gene	3681597	3681920	.	-	.	ID=gene3398;Name=hisE;gbkey=Gene;gene=hisE;gene_biotype=protein_coding;locus_tag=azo3342
AM406670.1	EMBL	CDS	3681597	3681920	.	-	0	ID=cds3338;Parent=gene3398;Dbxref=EnsemblGenomes-Gn:azo3342,EnsemblGenomes-Tr:CAL95958,GOA:A1KAV2,InterPro:IPR008179,InterPro:IPR021130,NCBI_GP:CAL95958.1;Name=CAL95958.1;Note=Phosphoribosyl-ATP pyrophosphatase%2C catalyzes the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O %3D 5-phosphoribosyl-AMP + PPi Similar to sprot|HIS2_PSEAE (51%25) and to sprot|HIS2_AZOBR (43%25). Pfam: PRA-PH%2C Phosphoribosyl-ATP pyrophosphohydrolase%3B~High confidence in function and specificity;gbkey=CDS;gene=hisE;product=phosphoribosyl-ATP pyrophosphatase;protein_id=CAL95958.1;transl_table=11
AM406670.1	EMBL	gene	3681917	3682312	.	-	.	ID=gene3399;Name=hisI;gbkey=Gene;gene=hisI;gene_biotype=protein_coding;locus_tag=azo3343
AM406670.1	EMBL	CDS	3681917	3682312	.	-	0	ID=cds3339;Parent=gene3399;Dbxref=EnsemblGenomes-Gn:azo3343,EnsemblGenomes-Tr:CAL95959,GOA:A1KAV3,InterPro:IPR002496,InterPro:IPR026660,NCBI_GP:CAL95959.1;Name=CAL95959.1;Note=Phosphoribosyl-AMP cyclohydrolase catalyzes the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O %3D 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl)imidazole-4-carboxamide. It requires Zn2+ ions for activity. Similar to sprot|HIS3_RALSO (70%25) and to sprot|HIS3_NITEU (61%25). Pfam: PRA-CH%2C Phosphoribosyl-AMP cyclohydrolase%3B~High confidence in function and specificity;gbkey=CDS;gene=hisI;product=HisI protein;protein_id=CAL95959.1;transl_table=11
AM406670.1	EMBL	gene	3682309	3683067	.	-	.	ID=gene3400;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;locus_tag=azo3344
AM406670.1	EMBL	CDS	3682309	3683067	.	-	0	ID=cds3340;Parent=gene3400;Dbxref=EnsemblGenomes-Gn:azo3344,EnsemblGenomes-Tr:CAL95960,GOA:A1KAV4,InterPro:IPR004651,InterPro:IPR006062,InterPro:IPR011060,InterPro:IPR013785,NCBI_GP:CAL95960.1;Name=CAL95960.1;Note=Imidazole glycerol phosphate synthase subunit%2ChisF. Similar to sprot|HIS6_RALSO (73%25) and to sprot|HIS6_AZOBR (70%25). The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. TIGRFAM: Imidazole glycerol phosphate synthase subunit%2C hisF Pfam: Histidine biosynthesis protein%3B~High confidence in function and specificity;gbkey=CDS;gene=hisF;product=imidazole glycerol phosphate synthase subunit;protein_id=CAL95960.1;transl_table=11
AM406670.1	EMBL	gene	3683067	3683822	.	-	.	ID=gene3401;Name=hisA;gbkey=Gene;gene=hisA;gene_biotype=protein_coding;locus_tag=azo3345
AM406670.1	EMBL	CDS	3683067	3683822	.	-	0	ID=cds3341;Parent=gene3401;Dbxref=EnsemblGenomes-Gn:azo3345,EnsemblGenomes-Tr:CAL95961,GOA:A1KAV5,InterPro:IPR006062,InterPro:IPR006063,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR023016,NCBI_GP:CAL95961.1;Name=CAL95961.1;Note=Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase%2C HisA. Similar to sprot|HIS4_RALSO (76%25) and to sprot|HIS4_AZOBR (52%25). Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase%2C involved in the fourth step of histidine biosynthesis. TIGRFAM (TIGR00007): phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Pfam: Histidine biosynthesis protein%3B~High confidence in function and specificity;gbkey=CDS;gene=hisA;product=phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase;protein_id=CAL95961.1;transl_table=11
AM406670.1	EMBL	gene	3683868	3684506	.	-	.	ID=gene3402;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=azo3346
AM406670.1	EMBL	CDS	3683868	3684506	.	-	0	ID=cds3342;Parent=gene3402;Dbxref=EnsemblGenomes-Gn:azo3346,EnsemblGenomes-Tr:CAL95962,GOA:A1KAV6,InterPro:IPR010139,InterPro:IPR017926,InterPro:IPR029062,UniProtKB/TrEMBL:A1KAV6,NCBI_GP:CAL95962.1;Name=CAL95962.1;Note=Glutamine amidotransferase subunit%2C HisH the imidazole glycerol phosphate synthase (IGPS) which catalyzes the fifth step of the histidine biosynthesis. Similar to sprot|HIS5_RALSO (55%25) and to pir|B83251 (37%25). InterPro (PF00117): Glutamine amidotransferase class-I%3B~High confidence in function and specificity;gbkey=CDS;gene=hisH;product=histidine amidotransferase;protein_id=CAL95962.1;transl_table=11
AM406670.1	EMBL	gene	3684561	3685190	.	-	.	ID=gene3403;Name=hisB;gbkey=Gene;gene=hisB;gene_biotype=protein_coding;locus_tag=azo3347
AM406670.1	EMBL	CDS	3684561	3685190	.	-	0	ID=cds3343;Parent=gene3403;Dbxref=EnsemblGenomes-Gn:azo3347,EnsemblGenomes-Tr:CAL95963,GOA:A1KAV7,InterPro:IPR000807,InterPro:IPR020565,InterPro:IPR020568,NCBI_GP:CAL95963.1;Name=CAL95963.1;Note=Imidazoleglycerol-phosphate dehydratase is the enzyme that catalyzes the seventh step in the biosynthesis of histidine in bacteria%2C fungi and plants. Similar to sprot|HIS7_RALSO (73%25) and to sprot|HI7B_ARATH (54%25)and to sprot|HIS7_ECOLI (47%25). Pfam: IGPD%2C Imidazoleglycerol-phosphate dehydratase%3B~Specificity unclear;gbkey=CDS;gene=hisB;product=HisB protein;protein_id=CAL95963.1;transl_table=11
AM406670.1	EMBL	gene	3685259	3686347	.	+	.	ID=gene3404;Name=hisC2;gbkey=Gene;gene=hisC2;gene_biotype=protein_coding;locus_tag=azo3348
AM406670.1	EMBL	CDS	3685259	3686347	.	+	0	ID=cds3344;Parent=gene3404;Dbxref=EnsemblGenomes-Gn:azo3348,EnsemblGenomes-Tr:CAL95964,GOA:A1KAV8,InterPro:IPR001917,InterPro:IPR004839,InterPro:IPR005861,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1KAV8,NCBI_GP:CAL95964.1;Name=CAL95964.1;Note=Histidinol-phosphate aminotransferase%2C hisC. Similar to sprot|HIS8_PSESM (64%25). Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes%2C such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity%2C these various enzymes can be grouped into class I and class II. InterPro (PF00155): Aminotransferase class I and II%3B~High confidence in function and specificity;gbkey=CDS;gene=hisC2;product=histidinol-phosphate aminotransferase;protein_id=CAL95964.1;transl_table=11
AM406670.1	EMBL	gene	3686429	3687163	.	-	.	ID=gene3405;Name=azo3349;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3349
AM406670.1	EMBL	CDS	3686429	3687163	.	-	0	ID=cds3345;Parent=gene3405;Dbxref=EnsemblGenomes-Gn:azo3349,EnsemblGenomes-Tr:CAL95965,GOA:A1KAV9,InterPro:IPR008258,InterPro:IPR023346,UniProtKB/TrEMBL:A1KAV9,NCBI_GP:CAL95965.1;Name=CAL95965.1;Note=Similar to phage protein P7. InterPro: SLT domain%3B~Family membership;gbkey=CDS;product=putative transglycosylase;protein_id=CAL95965.1;transl_table=11
AM406670.1	EMBL	gene	3687461	3688036	.	-	.	ID=gene3406;Name=ampD2;gbkey=Gene;gene=ampD2;gene_biotype=protein_coding;locus_tag=azo3350
AM406670.1	EMBL	CDS	3687461	3688036	.	-	0	ID=cds3346;Parent=gene3406;Dbxref=EnsemblGenomes-Gn:azo3350,EnsemblGenomes-Tr:CAL95966,GOA:A1KAW0,InterPro:IPR002502,UniProtKB/TrEMBL:A1KAW0,NCBI_GP:CAL95966.1;Name=CAL95966.1;Note=Putative signaling protein in beta-lactamase regulation. AMPD seems not to act as a direct sensor for beta-lactams. It hydrolyzes 16-anhydro-N-acetylmuramoyl-L-alanyl-D-3glutamyl-meso-diaminopimelic acid to the tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate (By similarity)%2C TREMBL:Q8KRJ4 (63%25 identity)%3B SWISSPROT:P82974 (60%25 identity). Pfam (PF01510): N-acetylmuramoyl-L-alanine amidase.%3B~High confidence in function and specificity;gbkey=CDS;gene=ampD2;product=N-acetyl-anhydromuramyl-L-alanine amidase;protein_id=CAL95966.1;transl_table=11
AM406670.1	EMBL	gene	3688047	3688952	.	-	.	ID=gene3407;Name=azo3351;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3351
AM406670.1	EMBL	CDS	3688047	3688952	.	-	0	ID=cds3347;Parent=gene3407;Dbxref=EnsemblGenomes-Gn:azo3351,EnsemblGenomes-Tr:CAL95967,GOA:A1KAW1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAW1,NCBI_GP:CAL95967.1;Name=CAL95967.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs%2C TREMBL:O59091 (37%25 identity)%3B TREMBL:Q7NDM5 (40%25 identity). Pfam (PF00005): ABC transporter. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~High confidence in function and specificity;gbkey=CDS;product=putative ABC transporter ATP-binding protein;protein_id=CAL95967.1;transl_table=11
AM406670.1	EMBL	gene	3688949	3689800	.	-	.	ID=gene3408;Name=azo3352;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3352
AM406670.1	EMBL	CDS	3688949	3689800	.	-	0	ID=cds3348;Parent=gene3408;Dbxref=EnsemblGenomes-Gn:azo3352,EnsemblGenomes-Tr:CAL95968,UniProtKB/TrEMBL:A1KAW2,NCBI_GP:CAL95968.1;Name=CAL95968.1;Note=Similar to hypothetical protein GSU1500 of Geobacter sulfurreducens PCA (16%25). TMHMM2 reporting one TMhelix. Sigcleave reporting one SignalPeptide. Coils2 reporting coiled coil region;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL95968.1;transl_table=11
AM406670.1	EMBL	gene	3689807	3690616	.	-	.	ID=gene3409;Name=azo3353;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3353
AM406670.1	EMBL	CDS	3689807	3690616	.	-	0	ID=cds3349;Parent=gene3409;Dbxref=EnsemblGenomes-Gn:azo3353,EnsemblGenomes-Tr:CAL95969,UniProtKB/TrEMBL:A1KAW3,NCBI_GP:CAL95969.1;Name=CAL95969.1;Note=In Myxococcus xanthus pilI are co-transcribed with pilH an ABC transporter homologue required for type IV pilus biogenesis and social gliding. pilI appear to be functionally related to pilH. Similar to membrane protein of Geobacter sulfurreducens PCA (14%25) and weak%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL95969.1;transl_table=11
AM406670.1	EMBL	gene	3690780	3691208	.	-	.	ID=gene3410;Name=pilB;gbkey=Gene;gene=pilB;gene_biotype=protein_coding;locus_tag=azo3354
AM406670.1	EMBL	CDS	3690780	3691208	.	-	0	ID=cds3350;Parent=gene3410;Dbxref=EnsemblGenomes-Gn:azo3354,EnsemblGenomes-Tr:CAL95970,UniProtKB/TrEMBL:O85010,NCBI_GP:CAL95970.1;Name=CAL95970.1;Note=PilB encodes for a 14.2 kDa polypeptide showing similarity to FimF%2C a component of type I fimbriae of E. coli. It may be part of the pilus assembly complex or the pilus itself. (Reference: Doerr et al.%2C 1998 Molecular Microbiology)%3B~Specificity unclear;gbkey=CDS;gene=pilB;product=Type IV pilus assembly protein;protein_id=CAL95970.1;transl_table=11
AM406670.1	EMBL	gene	3691277	3691456	.	-	.	ID=gene3411;Name=pilA;gbkey=Gene;gene=pilA;gene_biotype=protein_coding;locus_tag=azo3355
AM406670.1	EMBL	CDS	3691277	3691456	.	-	0	ID=cds3351;Parent=gene3411;Dbxref=EnsemblGenomes-Gn:azo3355,EnsemblGenomes-Tr:CAL95971,InterPro:IPR012902,UniProtKB/TrEMBL:O85009,NCBI_GP:CAL95971.1;Name=CAL95971.1;Note=PilA encodes an unusually short (6.4 kDa)putative pilin precursor showing 100%25 sequence identity to the conserved N-terminus of the Pseudomonas aeruginosa type IV pilin. (Reference: Doerr et al.%2C 1998 Molecular Microbiology)%3B~High confidence in function and specificity;gbkey=CDS;gene=pilA;product=tfp structural protein;protein_id=CAL95971.1;transl_table=11
AM406670.1	EMBL	gene	3691660	3693036	.	-	.	ID=gene3412;Name=pilR;gbkey=Gene;gene=pilR;gene_biotype=protein_coding;locus_tag=azo3356
AM406670.1	EMBL	CDS	3691660	3693036	.	-	0	ID=cds3352;Parent=gene3412;Dbxref=EnsemblGenomes-Gn:azo3356,EnsemblGenomes-Tr:CAL95972,GOA:A1KAW6,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAW6,NCBI_GP:CAL95972.1;Name=CAL95972.1;Note=Two component system response regulator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=pilR;product=two component system response regulator;protein_id=CAL95972.1;transl_table=11
AM406670.1	EMBL	gene	3693033	3694586	.	-	.	ID=gene3413;Name=pilS;gbkey=Gene;gene=pilS;gene_biotype=protein_coding;locus_tag=azo3357
AM406670.1	EMBL	CDS	3693033	3694586	.	-	0	ID=cds3353;Parent=gene3413;Dbxref=EnsemblGenomes-Gn:azo3357,EnsemblGenomes-Tr:CAL95973,GOA:A1KAW7,InterPro:IPR000014,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1KAW7,NCBI_GP:CAL95973.1;Name=CAL95973.1;Note=Two component system sensor protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=pilS;product=two component system sensor protein;protein_id=CAL95973.1;transl_table=11
AM406670.1	EMBL	gene	3694588	3694929	.	-	.	ID=gene3414;Name=azo3358;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3358
AM406670.1	EMBL	CDS	3694588	3694929	.	-	0	ID=cds3354;Parent=gene3414;Dbxref=EnsemblGenomes-Gn:azo3358,EnsemblGenomes-Tr:CAL95974,UniProtKB/TrEMBL:A1KAW8,NCBI_GP:CAL95974.1;Name=CAL95974.1;Note=Hypothetical membrane protein. No real homology of the entire protein to the data bank. no domains predicted no signal peptide 1TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL95974.1;transl_table=11
AM406670.1	EMBL	gene	3694971	3696188	.	-	.	ID=gene3415;Name=ybdL;gbkey=Gene;gene=ybdL;gene_biotype=protein_coding;locus_tag=azo3359
AM406670.1	EMBL	CDS	3694971	3696188	.	-	0	ID=cds3355;Parent=gene3415;Dbxref=EnsemblGenomes-Gn:azo3359,EnsemblGenomes-Tr:CAL95975,GOA:A1KAW9,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1KAW9,NCBI_GP:CAL95975.1;Name=CAL95975.1;Note=Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes%2Csuch as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity%2C these various enzymes can be grouped into subfamilies%3B these sequences are defined by the aminotransferases class-I pyridoxal-phosphate attachment site signature%2C which contains the lysine residue involved in pyridoxal-phosphate binding. Similar to trembl|Q8XXV2 (58%25) and to sprot|YBDL_ECOLI (52%25). Pfam (PF00155): Aminotransferases class-I pyridoxal-phosphate-binding site%3B~Specificity unclear;gbkey=CDS;gene=ybdL;product=probable aminotransferase;protein_id=CAL95975.1;transl_table=11
AM406670.1	EMBL	gene	3696278	3697354	.	+	.	ID=gene3416;Name=eif;gbkey=Gene;gene=eif;gene_biotype=protein_coding;locus_tag=azo3360
AM406670.1	EMBL	CDS	3696278	3697354	.	+	0	ID=cds3356;Parent=gene3416;Dbxref=EnsemblGenomes-Gn:azo3360,EnsemblGenomes-Tr:CAL95976,GOA:A1KAX0,InterPro:IPR000649,InterPro:IPR005251,InterPro:IPR011559,InterPro:IPR027363,UniProtKB/TrEMBL:A1KAX0,NCBI_GP:CAL95976.1;Name=CAL95976.1;Note=Putative translation initiation factor eIF-2B (eIF-2B GDP-GTP exchange factor). CATALYZES THE EXCHANGE OF INITIATION FACTOR 2-BOUND GDP FOR GTP%3B~High confidence in function and specificity;gbkey=CDS;gene=eif;product=translation initiation factor eIF-2B alpha subunit;protein_id=CAL95976.1;transl_table=11
AM406670.1	EMBL	gene	3697351	3698049	.	+	.	ID=gene3417;Name=fucA;gbkey=Gene;gene=fucA;gene_biotype=protein_coding;locus_tag=azo3361
AM406670.1	EMBL	CDS	3697351	3698049	.	+	0	ID=cds3357;Parent=gene3417;Dbxref=EnsemblGenomes-Gn:azo3361,EnsemblGenomes-Tr:CAL95977,GOA:A1KAX1,InterPro:IPR001303,UniProtKB/TrEMBL:A1KAX1,NCBI_GP:CAL95977.1;Name=CAL95977.1;Note=L-fuculose phosphate aldolase(L-fuculose-1-phosphate aldolase). Involved in the fucose metabolism catalyzing the third step of the pathway%2C L-fuculose 1-phosphate %3D glycerone phosphate + (S)-lactaldehyde. 41%25 Aldolase_II_N.IPR004782%3B FucA. Pfam:PF00596%3B Aldolase_II%3B 1. TIGRFAMs:TIGR01086%3B fucA%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=fucA;product=putative L-fuculose phosphate aldolase;protein_id=CAL95977.1;transl_table=11
AM406670.1	EMBL	gene	3698348	3699238	.	-	.	ID=gene3418;Name=glxR1;gbkey=Gene;gene=glxR1;gene_biotype=protein_coding;locus_tag=azo3362
AM406670.1	EMBL	CDS	3698348	3699238	.	-	0	ID=cds3358;Parent=gene3418;Dbxref=EnsemblGenomes-Gn:azo3362,EnsemblGenomes-Tr:CAL95978,GOA:A1KAX2,InterPro:IPR002204,InterPro:IPR006115,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR015815,InterPro:IPR016040,InterPro:IPR029154,UniProtKB/TrEMBL:A1KAX2,NCBI_GP:CAL95978.1;Name=CAL95978.1;Note=Putative 2-hydroxy-3-oxopropionate reductase Homology to glxR of E. coli of 39%25 (SWISSPROT:GLXR_ECOLI) Activity:- (R)-glycerate + NAD(P)(+) %3D 2-hydroxy-3-oxopropanoate + NAD(P)H. InterPro: 3-hydroyisobutyrate dehydrogenase (IPR002204) Pfam: Nad binding domain of 6-phosphoglucanate dehydrogenase (PF03446) Tigrfam: gnd_rel: 6-phosphoglucante no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=glxR1;product=putative 2-hydroxy-3-oxopropionate reductase;protein_id=CAL95978.1;transl_table=11
AM406670.1	EMBL	gene	3699235	3700116	.	-	.	ID=gene3419;Name=glxR2;gbkey=Gene;gene=glxR2;gene_biotype=protein_coding;locus_tag=azo3363
AM406670.1	EMBL	CDS	3699235	3700116	.	-	0	ID=cds3359;Parent=gene3419;Dbxref=EnsemblGenomes-Gn:azo3363,EnsemblGenomes-Tr:CAL95979,GOA:A1KAX3,InterPro:IPR002204,InterPro:IPR006115,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR015815,InterPro:IPR016040,InterPro:IPR029154,UniProtKB/TrEMBL:A1KAX3,NCBI_GP:CAL95979.1;Name=CAL95979.1;Note=Probable 2-hydroxy-3-oxopropionate reductase Homology to glxR of E. coli of 46%25 (SWISSPROT:GLXR_ECOLI) Activity:- (R)-glycerate + NAD(P)(+) %3D 2-hydroxy-3-oxopropanoate + NAD(P)H. InterPro: 3-hydroyisobutyrate dehydrogenase (IPR002204) Pfam: Nad binding domain of 6-phosphoglucanate dehydrogenase (PF03446) Tigrfam: gnd_rel: 6-phosphoglucante no signal peptide no TMHs 0%3B~High confidence in function and specificity;gbkey=CDS;gene=glxR2;product=probable 2-hydroxy-3-oxopropionate reductase;protein_id=CAL95979.1;transl_table=11
AM406670.1	EMBL	gene	3700206	3701126	.	+	.	ID=gene3420;Name=azo3364;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3364
AM406670.1	EMBL	CDS	3700206	3701126	.	+	0	ID=cds3360;Parent=gene3420;Dbxref=EnsemblGenomes-Gn:azo3364,EnsemblGenomes-Tr:CAL95980,GOA:A1KAX4,InterPro:IPR000312,InterPro:IPR017459,UniProtKB/TrEMBL:A1KAX4,NCBI_GP:CAL95980.1;Name=CAL95980.1;Note=The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD%2C EC: 2.4.2.18) and thymidine phosphorylase (EC: 2.4.2.2). All these proteins can transfer a phosphorylated ribose substrate. Similar to sprot|YBIB_ECOLI (40%25) and to sprot|TRPD_SULSO (25%25). Pfam (PF02885): Glycosyl transferase%2C family 3%3B~Family membership;gbkey=CDS;product=glycosyl transferase;protein_id=CAL95980.1;transl_table=11
AM406670.1	EMBL	gene	3701590	3702435	.	-	.	ID=gene3421;Name=modD;gbkey=Gene;gene=modD;gene_biotype=protein_coding;locus_tag=azo3365
AM406670.1	EMBL	CDS	3701590	3702435	.	-	0	ID=cds3361;Parent=gene3421;Dbxref=EnsemblGenomes-Gn:azo3365,EnsemblGenomes-Tr:CAL95981,GOA:A1KAX5,InterPro:IPR002638,InterPro:IPR006242,InterPro:IPR013785,InterPro:IPR022412,InterPro:IPR027277,UniProtKB/TrEMBL:A1KAX5,NCBI_GP:CAL95981.1;Name=CAL95981.1;Note=Putative pyrophosphorylase modD (EC 2.4.2.-). InterPro: Quinolinate phosphoribosyl transferase%3B~Specificity unclear;gbkey=CDS;gene=modD;product=putative molybdenum transport protein;protein_id=CAL95981.1;transl_table=11
AM406670.1	EMBL	gene	3702524	3702907	.	-	.	ID=gene3422;Name=azo3366;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3366
AM406670.1	EMBL	CDS	3702524	3702907	.	-	0	ID=cds3362;Parent=gene3422;Dbxref=EnsemblGenomes-Gn:azo3366,EnsemblGenomes-Tr:CAL95982,InterPro:IPR003731,UniProtKB/TrEMBL:A1KAX6,NCBI_GP:CAL95982.1;Name=CAL95982.1;Note=Conserved hypothetical protein. Homology to rpa3088 of R. palustris of 65%25 (tremblnew|CAE28529). Pfam: Dinitrogenase iron-molybdenum cofactor. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95982.1;transl_table=11
AM406670.1	EMBL	gene	3702913	3703188	.	-	.	ID=gene3423;Name=azo3367;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3367
AM406670.1	EMBL	CDS	3702913	3703188	.	-	0	ID=cds3363;Parent=gene3423;Dbxref=EnsemblGenomes-Gn:azo3367,EnsemblGenomes-Tr:CAL95983,GOA:A1KAX7,InterPro:IPR007415,UniProtKB/TrEMBL:A1KAX7,NCBI_GP:CAL95983.1;Name=CAL95983.1;Note=Putative NifZ Protein homolog%2C shares 45%25 similarity to SwissProt:P46040%2C NifZ protein entry. Has PF04319:IPR007415:NifZ domain%3BThis short protein is found in the nif (nitrogen fixation) operon. Its function is unknown but is probably involved in nitrogen fixation or regulating some component of this process. This 75 residue region is presumed to be a domain. It is found in isolation in some members and in the amino terminal half of the longer NifZ proteins. No Signal peptide present. No TMH Present.%3B~High confidence in function and specificity;gbkey=CDS;product=putative NifZ Protein homolog;protein_id=CAL95983.1;transl_table=11
AM406670.1	EMBL	gene	3703191	3703517	.	-	.	ID=gene3424;Name=fer22;gbkey=Gene;gene=fer22;gene_biotype=protein_coding;locus_tag=azo3368
AM406670.1	EMBL	CDS	3703191	3703517	.	-	0	ID=cds3364;Parent=gene3424;Dbxref=EnsemblGenomes-Gn:azo3368,EnsemblGenomes-Tr:CAL95984,InterPro:IPR012336,UniProtKB/TrEMBL:A1KAX8,NCBI_GP:CAL95984.1;Name=CAL95984.1;Note=Probable ferredoxin 2fe-2s protein. Homology to fer2 of C. pasteruianum of 43%25 (sprot|FER2_CLOPA). Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=fer22;product=probable ferredoxin 2Fe-2S protein;protein_id=CAL95984.1;transl_table=11
AM406670.1	EMBL	gene	3703673	3704557	.	-	.	ID=gene3425;Name=azo3369;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3369
AM406670.1	EMBL	CDS	3703673	3704557	.	-	0	ID=cds3365;Parent=gene3425;Dbxref=EnsemblGenomes-Gn:azo3369,EnsemblGenomes-Tr:CAL95985,InterPro:IPR003829,InterPro:IPR008778,InterPro:IPR011051,InterPro:IPR012093,InterPro:IPR014710,UniProtKB/TrEMBL:A1KAX9,NCBI_GP:CAL95985.1;Name=CAL95985.1;Note=Pirin-like protein. TREMBL:8Y1Z6: 68%25 identity%2C 80%25 similarity InterPro: DUF209 InterPro:IPR008778%3B Pirin_C. IPR003829%3B Pirin_N. Pfam :PF02678%3B Pirin%3B 1. PF05726%3B Pirin_C TIGR00292: thiazole biosynthesis enzyme No signal peptide (Signal P predicted). No transmembrane helices (TMHMM predicted).%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95985.1;transl_table=11
AM406670.1	EMBL	gene	3704618	3705220	.	-	.	ID=gene3426;Name=acpD;gbkey=Gene;gene=acpD;gene_biotype=protein_coding;locus_tag=azo3370
AM406670.1	EMBL	CDS	3704618	3705220	.	-	0	ID=cds3366;Parent=gene3426;Dbxref=EnsemblGenomes-Gn:azo3370,EnsemblGenomes-Tr:CAL95986,GOA:A1KAY0,InterPro:IPR003680,InterPro:IPR023048,InterPro:IPR029039,NCBI_GP:CAL95986.1;Name=CAL95986.1;Note=Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP (By similarity). Entry name :- SWISSPROT:ACPD_ECOLI InterPro:-IPR003680%3B NADHdh_2. Pfam:- PF02525%3B Flavodoxin_2%3B 1. Identities %3D 97/180 (53%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=acpD;product=probable acyl carrier protein phosphodiesterase;protein_id=CAL95986.1;transl_table=11
AM406670.1	EMBL	gene	3705329	3706252	.	+	.	ID=gene3427;Name=ltrA;gbkey=Gene;gene=ltrA;gene_biotype=protein_coding;locus_tag=azo3371
AM406670.1	EMBL	CDS	3705329	3706252	.	+	0	ID=cds3367;Parent=gene3427;Dbxref=EnsemblGenomes-Gn:azo3371,EnsemblGenomes-Tr:CAL95987,GOA:A1KAY1,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1KAY1,NCBI_GP:CAL95987.1;Name=CAL95987.1;Note=Putative transcriptional regulator%2C LysR family%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=ltrA;product=putative transcriptional regulator%2C LysR family;protein_id=CAL95987.1;transl_table=11
AM406670.1	EMBL	gene	3706379	3706879	.	+	.	ID=gene3428;Name=dsbB;gbkey=Gene;gene=dsbB;gene_biotype=protein_coding;locus_tag=azo3372
AM406670.1	EMBL	CDS	3706379	3706879	.	+	0	ID=cds3368;Parent=gene3428;Dbxref=EnsemblGenomes-Gn:azo3372,EnsemblGenomes-Tr:CAL95988,GOA:A1KAY2,InterPro:IPR003752,InterPro:IPR022920,InterPro:IPR023380,NCBI_GP:CAL95988.1;Name=CAL95988.1;Note=Disulfide bond formation protein B. Homology to dsdB of B. cepacia of 38%25 (BAA11858). Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the dsbA protein (By similarity). InterPro: Disulfide bond formation protein DsbB (IPR3752). Pfam: Disulfide bond formation protein DsbB signal peptide probable 3 to 4 TMHs%3B~Family membership;gbkey=CDS;gene=dsbB;product=putative disulfide bond formation protein B;protein_id=CAL95988.1;transl_table=11
AM406670.1	EMBL	gene	3706887	3707195	.	-	.	ID=gene3429;Name=azo3373;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3373
AM406670.1	EMBL	CDS	3706887	3707195	.	-	0	ID=cds3369;Parent=gene3429;Dbxref=EnsemblGenomes-Gn:azo3373,EnsemblGenomes-Tr:CAL95989,GOA:A1KAY3,InterPro:IPR009875,UniProtKB/TrEMBL:A1KAY3,NCBI_GP:CAL95989.1;Name=CAL95989.1;Note=Conserved hypothetical protein. Homology to cv1788 of C. violaceum of 33%25 (trembl|Q7NX41). no domains predicted. no signal peptide. no TMHS.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95989.1;transl_table=11
AM406670.1	EMBL	gene	3707307	3707525	.	-	.	ID=gene3430;Name=azo3374;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3374
AM406670.1	EMBL	CDS	3707307	3707525	.	-	0	ID=cds3370;Parent=gene3430;Dbxref=EnsemblGenomes-Gn:azo3374,EnsemblGenomes-Tr:CAL95990,GOA:A1KAY4,InterPro:IPR021309,UniProtKB/TrEMBL:A1KAY4,NCBI_GP:CAL95990.1;Name=CAL95990.1;Note=Homolog to the hypothetical protein ygaP from E.coli. SWISSPROT:YGAP_ECOLI InterPro: IPR001763%3B Rhodanese-like. Pfam: PF00581%3B Rhodanese%3B 1. TMhelix:2 present.%3B~Function unclear;gbkey=CDS;product=thiosulfate sulfurtransferase;protein_id=CAL95990.1;transl_table=11
AM406670.1	EMBL	gene	3707522	3710800	.	-	.	ID=gene3431;Name=azo3375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3375
AM406670.1	EMBL	CDS	3707522	3710800	.	-	0	ID=cds3371;Parent=gene3431;Dbxref=EnsemblGenomes-Gn:azo3375,EnsemblGenomes-Tr:CAL95991,GOA:A1KAY5,InterPro:IPR001036,InterPro:IPR027463,UniProtKB/TrEMBL:A1KAY5,NCBI_GP:CAL95991.1;Name=CAL95991.1;Note=AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein%2C AcrA%2C and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer%2C TREMBL:Q8KAV4 (43%25 identity)%3B SWISSPROT:P25197 (23%25 identity). InterPro (IPR001036): Acriflavin resistance protein. PFam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00914): Heavy metal efflux pump%2C CzcA family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein. TMHMM predicting 11 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.%3B~Specificity unclear;gbkey=CDS;product=RND efflux transporter%2C permease protein;protein_id=CAL95991.1;transl_table=11
AM406670.1	EMBL	gene	3710800	3711864	.	-	.	ID=gene3432;Name=azo3376;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3376
AM406670.1	EMBL	CDS	3710800	3711864	.	-	0	ID=cds3372;Parent=gene3432;Dbxref=EnsemblGenomes-Gn:azo3376,EnsemblGenomes-Tr:CAL95992,GOA:A1KAY6,InterPro:IPR006143,UniProtKB/TrEMBL:A1KAY6,NCBI_GP:CAL95992.1;Name=CAL95992.1;Note=HlyD family secretion protein. The secretion of a number of proteins/molecules require the help of members belonging to the ABC transporter family and a membrane fusion protein belonging to the HlyD family. SignalP predicting signal peptide. TC (2.A.6.1): The Heavy Metal Efflux (HME) Family.%3B~Family membership;gbkey=CDS;product=membrane fusion protein;protein_id=CAL95992.1;transl_table=11
AM406670.1	EMBL	gene	3711911	3712303	.	-	.	ID=gene3433;Name=azo3377;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3377
AM406670.1	EMBL	CDS	3711911	3712303	.	-	0	ID=cds3373;Parent=gene3433;Dbxref=EnsemblGenomes-Gn:azo3377,EnsemblGenomes-Tr:CAL95993,GOA:A1KAY7,InterPro:IPR002762,UniProtKB/TrEMBL:A1KAY7,NCBI_GP:CAL95993.1;Name=CAL95993.1;Note=Conserved hypothetical protein. Homology to Bcep18194_A5800 of Burkholderia sp. 383 of 53%25. Pfam: CbiX. The function of CbiX is uncertain%2C however it is found in cobalamin biosynthesis operons and so may have a related function. Some CbiX proteins contain a striking histidine-rich region at their C-terminus%2C which suggests that it might be involved in metal chelation. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL95993.1;transl_table=11
AM406670.1	EMBL	gene	3712312	3713148	.	-	.	ID=gene3434;Name=azo3378;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3378
AM406670.1	EMBL	CDS	3712312	3713148	.	-	0	ID=cds3374;Parent=gene3434;Dbxref=EnsemblGenomes-Gn:azo3378,EnsemblGenomes-Tr:CAL95994,GOA:A1KAY8,InterPro:IPR000594,InterPro:IPR009036,InterPro:IPR016040,UniProtKB/TrEMBL:A1KAY8,NCBI_GP:CAL95994.1;Name=CAL95994.1;Note=Region start changed from 3713308 to 3713122 (-186 bases);gbkey=CDS;product=HesA/MoeB/ThiF family protein;protein_id=CAL95994.1;transl_table=11
AM406670.1	EMBL	gene	3713397	3714398	.	-	.	ID=gene3435;Name=azo3379;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3379
AM406670.1	EMBL	CDS	3713397	3714398	.	-	0	ID=cds3375;Parent=gene3435;Dbxref=EnsemblGenomes-Gn:azo3379,EnsemblGenomes-Tr:CAL95995,GOA:A1KAY9,InterPro:IPR001279,UniProtKB/TrEMBL:A1KAY9,NCBI_GP:CAL95995.1;Name=CAL95995.1;Note=Probable metallo betalactamase related protein with 47%25 identity and 65%25 similarity (TREMBL:Q82SI4). Pfam: Chitin synthetase%2C SOR/SNZ family%2C Thiolase N-terminal domain%2C phosphotyrosine interaction domain. TMHMM predicted transmembrane helix.%3B~Function unclear;gbkey=CDS;product=hydroxyacylglutathione hydrolase;protein_id=CAL95995.1;transl_table=11
AM406670.1	EMBL	gene	3714479	3715621	.	+	.	ID=gene3436;Name=azo3380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3380
AM406670.1	EMBL	CDS	3714479	3715621	.	+	0	ID=cds3376;Parent=gene3436;Dbxref=EnsemblGenomes-Gn:azo3380,EnsemblGenomes-Tr:CAL95996,GOA:A1KAZ0,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR027619,UniProtKB/TrEMBL:A1KAZ0,NCBI_GP:CAL95996.1;Name=CAL95996.1;Note=Region start changed from 3714581 to 3714479 (102 bases);gbkey=CDS;product=conserved hypothetical transaminase;protein_id=CAL95996.1;transl_table=11
AM406670.1	EMBL	gene	3715626	3718484	.	-	.	ID=gene3437;Name=azo3381;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3381
AM406670.1	EMBL	CDS	3715626	3718484	.	-	0	ID=cds3377;Parent=gene3437;Dbxref=EnsemblGenomes-Gn:azo3381,EnsemblGenomes-Tr:CAL95997,GOA:A1KAZ1,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR013655,InterPro:IPR029787,UniProtKB/TrEMBL:A1KAZ1,NCBI_GP:CAL95997.1;Name=CAL95997.1;Note=Hypothetical signaling protein;gbkey=CDS;product=hypothetical signaling protein;protein_id=CAL95997.1;transl_table=11
AM406670.1	EMBL	gene	3718505	3718960	.	-	.	ID=gene3438;Name=rcp3;gbkey=Gene;gene=rcp3;gene_biotype=protein_coding;locus_tag=azo3382
AM406670.1	EMBL	CDS	3718505	3718960	.	-	0	ID=cds3378;Parent=gene3438;Dbxref=EnsemblGenomes-Gn:azo3382,EnsemblGenomes-Tr:CAL95998,GOA:A1KAZ2,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1KAZ2,NCBI_GP:CAL95998.1;Name=CAL95998.1;Note=Putative two-component system regulatory protein%2Cweak similarity to SWISSPROT: sprot|RCP1_SYNY3 (32%25 Synechocystis sp.%2C response regulator Rcp1 ) InterPro: IPR001789 Response_reg. Pfam: PF00072 response_reg. SMART: SM00448 REC. Response regulator rcp1. FORMS A TWO-COMPONENT SYSTEM WITH CPH1 IN WHICH IT ACTS AS RECEIVER SUBSTRATE.%3B~Family membership;gbkey=CDS;gene=rcp3;product=putative two-component system regulatory protein;protein_id=CAL95998.1;transl_table=11
AM406670.1	EMBL	gene	3719043	3721649	.	-	.	ID=gene3439;Name=cph2;gbkey=Gene;gene=cph2;gene_biotype=protein_coding;locus_tag=azo3383
AM406670.1	EMBL	CDS	3719043	3721649	.	-	0	ID=cds3379;Parent=gene3439;Dbxref=EnsemblGenomes-Gn:azo3383,EnsemblGenomes-Tr:CAL95999,GOA:A1KAZ3,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR013655,UniProtKB/TrEMBL:A1KAZ3,NCBI_GP:CAL95999.1;Name=CAL95999.1;Note=Putative two-component system sensor protein%2C weak similarity to SWISSPROT: sprot|PHY1_SYNY3 (10%25 Synechocystis sp.%2C Cph1) InterPro: IPR003594 ATPbind_ATPase. IPR004358 Bact_sens_pr_C. IPR003661 His_kinA_N. IPR005467 His_kinase. IPR003660 HAMP. IPR000014 PAS_domain. IPR001610 PAC motif. Pfam: PF00672 HAMP. PF02518 HATPase_c. PF00512 HisKA. PF00989 PAS domain. PF00785 PAC motif SMART: SM00304 HAMP. SM00387 HATPase_c. SM00388 HisKA. SM00091 PAS. SM00086 PAC. TIGRFAM: TIGR00229 PAS domain S-box. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices. Phytochrome-like protein cph1 (EC 2.7.3.-) (Light-regulated histidine kinase 1) (Bacteriophytochrome cph1). REGULATORY PHOTORECEPTOR WHICH EXISTS IN TWO FORMS THAT ARE REVERSIBLY INTERCONVERTIBLE BY LIGHT: THE R FORM THAT ABSORBS MAXIMALLY IN THE RED REGION OF THE SPECTRUM AND THE FR FORM THAT ABSORBS MAXIMALLY IN THE FAR-RED REGION. HAS ALSO A SLIGHT BLUE SHIFT FOR THE FAR-RED MAXIMUM. FORMS A TWO-COMPONENT SYSTEM WITH THE RCP1 RESPONSE REGULATOR.%3B~Conserved hypothetical protein;gbkey=CDS;gene=cph2;product=putative two-component system sensor protein;protein_id=CAL95999.1;transl_table=11
AM406670.1	EMBL	gene	3721646	3722614	.	-	.	ID=gene3440;Name=azo3384;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3384
AM406670.1	EMBL	CDS	3721646	3722614	.	-	0	ID=cds3380;Parent=gene3440;Dbxref=EnsemblGenomes-Gn:azo3384,EnsemblGenomes-Tr:CAL96000,UniProtKB/TrEMBL:A1KAZ4,NCBI_GP:CAL96000.1;Name=CAL96000.1;Note=Putative aliphatic sulfonates binding protein precursor.PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR ALIPHATIC SULFONATES. PUTATIVE BINDING PROTEIN. 22%25 SBP_bac_3. SMART: SM00062%3B PBPb%3B 1.%3B~Specificity unclear;gbkey=CDS;product=putative aliphatic sulfonates binding protein.;protein_id=CAL96000.1;transl_table=11
AM406670.1	EMBL	gene	3722791	3723273	.	-	.	ID=gene3441;Name=ssb;gbkey=Gene;gene=ssb;gene_biotype=protein_coding;locus_tag=azo3385
AM406670.1	EMBL	CDS	3722791	3723273	.	-	0	ID=cds3381;Parent=gene3441;Dbxref=EnsemblGenomes-Gn:azo3385,EnsemblGenomes-Tr:CAL96001,GOA:A1KAZ5,InterPro:IPR000424,InterPro:IPR011344,InterPro:IPR012340,UniProtKB/TrEMBL:A1KAZ5,NCBI_GP:CAL96001.1;Name=CAL96001.1;Note=Single-strand binding protein (Helix-destabilizing protein). This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=ssb;product=single-strand DNA-binding protein;protein_id=CAL96001.1;transl_table=11
AM406670.1	EMBL	gene	3723325	3724530	.	-	.	ID=gene3442;Name=azo3386;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3386
AM406670.1	EMBL	CDS	3723325	3724530	.	-	0	ID=cds3382;Parent=gene3442;Dbxref=EnsemblGenomes-Gn:azo3386,EnsemblGenomes-Tr:CAL96002,GOA:A1KAZ6,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1KAZ6,NCBI_GP:CAL96002.1;Name=CAL96002.1;Note=Hypothetical transport protein yajR. InterPro: General substrate transporters 2_A_01_02: Multidrug resistance protein%3B~Specificity unclear;gbkey=CDS;product=putative transport protein;protein_id=CAL96002.1;transl_table=11
AM406670.1	EMBL	gene	3724646	3727483	.	+	.	ID=gene3443;Name=uvrA2;gbkey=Gene;gene=uvrA2;gene_biotype=protein_coding;locus_tag=azo3387
AM406670.1	EMBL	CDS	3724646	3727483	.	+	0	ID=cds3383;Parent=gene3443;Dbxref=EnsemblGenomes-Gn:azo3387,EnsemblGenomes-Tr:CAL96003,GOA:A1KAZ7,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR004602,InterPro:IPR013815,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KAZ7,NCBI_GP:CAL96003.1;Name=CAL96003.1;Note=UvrABC system protein A (UvrA protein) . The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB the uvrA molecules dissociate (By similarity). InterPro: Excinuclease ABC A subunit uvra: excinuclease ABC A subunit.%3B~High confidence in function and specificity;gbkey=CDS;gene=uvrA2;product=excinuclease ABC subunit A;protein_id=CAL96003.1;transl_table=11
AM406670.1	EMBL	gene	3727563	3727862	.	+	.	ID=gene3444;Name=azo3388;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3388
AM406670.1	EMBL	CDS	3727563	3727862	.	+	0	ID=cds3384;Parent=gene3444;Dbxref=EnsemblGenomes-Gn:azo3388,EnsemblGenomes-Tr:CAL96004,UniProtKB/TrEMBL:A1KAZ8,NCBI_GP:CAL96004.1;Name=CAL96004.1;Note=Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96004.1;transl_table=11
AM406670.1	EMBL	gene	3727870	3728883	.	-	.	ID=gene3445;Name=galE2;gbkey=Gene;gene=galE2;gene_biotype=protein_coding;locus_tag=azo3389
AM406670.1	EMBL	CDS	3727870	3728883	.	-	0	ID=cds3385;Parent=gene3445;Dbxref=EnsemblGenomes-Gn:azo3389,EnsemblGenomes-Tr:CAL96005,GOA:A1KAZ9,InterPro:IPR001509,InterPro:IPR005886,InterPro:IPR016040,InterPro:IPR025308,UniProtKB/TrEMBL:A1KAZ9,NCBI_GP:CAL96005.1;Name=CAL96005.1;Note=UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP- galactose 4-epimerase). InterPro: NAD dependent epimerase/dehydratase family%3B~High confidence in function and specificity;gbkey=CDS;gene=galE2;product=UDP-glucose 4-epimerase;protein_id=CAL96005.1;transl_table=11
AM406670.1	EMBL	gene	3728974	3729369	.	-	.	ID=gene3446;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=azo3390
AM406670.1	EMBL	CDS	3728974	3729369	.	-	0	ID=cds3386;Parent=gene3446;Dbxref=EnsemblGenomes-Gn:azo3390,EnsemblGenomes-Tr:CAL96006,GOA:A1KB00,InterPro:IPR000456,NCBI_GP:CAL96006.1;Name=CAL96006.1;Note=High confidence in function and specificity;gbkey=CDS;gene=rplQ;product=50S ribosomal protein L17;protein_id=CAL96006.1;transl_table=11
AM406670.1	EMBL	gene	3729396	3730376	.	-	.	ID=gene3447;Name=rpoA;gbkey=Gene;gene=rpoA;gene_biotype=protein_coding;locus_tag=azo3391
AM406670.1	EMBL	CDS	3729396	3730376	.	-	0	ID=cds3387;Parent=gene3447;Dbxref=EnsemblGenomes-Gn:azo3391,EnsemblGenomes-Tr:CAL96007,GOA:A1KB01,InterPro:IPR009025,InterPro:IPR011260,InterPro:IPR011262,InterPro:IPR011263,InterPro:IPR011773,NCBI_GP:CAL96007.1;Name=CAL96007.1;Note=DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit)%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=rpoA;product=DNA-directed RNA polymerase;protein_id=CAL96007.1;transl_table=11
AM406670.1	EMBL	gene	3730415	3731044	.	-	.	ID=gene3448;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;locus_tag=azo3392
AM406670.1	EMBL	CDS	3730415	3731044	.	-	0	ID=cds3388;Parent=gene3448;Dbxref=EnsemblGenomes-Gn:azo3392,EnsemblGenomes-Tr:CAL96008,GOA:A1KB02,InterPro:IPR001912,InterPro:IPR002942,InterPro:IPR005709,InterPro:IPR022801,NCBI_GP:CAL96008.1;Name=CAL96008.1;Note=30S ribosomal protein S4.%3B~Family membership;gbkey=CDS;gene=rpsD;product=30S ribosomal protein S4;protein_id=CAL96008.1;transl_table=11
AM406670.1	EMBL	gene	3731059	3731448	.	-	.	ID=gene3449;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=azo3393
AM406670.1	EMBL	CDS	3731059	3731448	.	-	0	ID=cds3389;Parent=gene3449;Dbxref=EnsemblGenomes-Gn:azo3393,EnsemblGenomes-Tr:CAL96009,GOA:A1KB03,InterPro:IPR001971,InterPro:IPR018102,InterPro:IPR019981,NCBI_GP:CAL96009.1;Name=CAL96009.1;Note=30S ribosomal protein S11. Located on the platform of the 30S subunit it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsK;product=30S ribosomal protein S11;protein_id=CAL96009.1;transl_table=11
AM406670.1	EMBL	gene	3731461	3731823	.	-	.	ID=gene3450;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=azo3394
AM406670.1	EMBL	CDS	3731461	3731823	.	-	0	ID=cds3390;Parent=gene3450;Dbxref=EnsemblGenomes-Gn:azo3394,EnsemblGenomes-Tr:CAL96010,GOA:A1KB04,InterPro:IPR001892,InterPro:IPR010979,InterPro:IPR018269,InterPro:IPR019980,InterPro:IPR027437,NCBI_GP:CAL96010.1;Name=CAL96010.1;Note=30S ribosomal protein S13. Located at the top of the head of the 30S subunit it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b) connecting the 2 subunits%3B these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P- sites%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsM;product=30S ribosomal protein S13;protein_id=CAL96010.1;transl_table=11
AM406670.1	EMBL	gene	3731877	3731990	.	-	.	ID=gene3451;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;locus_tag=azo3395
AM406670.1	EMBL	CDS	3731877	3731990	.	-	0	ID=cds3391;Parent=gene3451;Dbxref=EnsemblGenomes-Gn:azo3395,EnsemblGenomes-Tr:CAL96011,GOA:A1KB05,InterPro:IPR000473,NCBI_GP:CAL96011.1;Name=CAL96011.1;Note=High confidence in function and specificity;gbkey=CDS;gene=rpmJ;product=Ribosomal protein L36;protein_id=CAL96011.1;transl_table=11
AM406670.1	EMBL	gene	3732016	3732234	.	-	.	ID=gene3452;Name=infA2;gbkey=Gene;gene=infA2;gene_biotype=protein_coding;locus_tag=azo3396
AM406670.1	EMBL	CDS	3732016	3732234	.	-	0	ID=cds3392;Parent=gene3452;Dbxref=EnsemblGenomes-Gn:azo3396,EnsemblGenomes-Tr:CAL96012,GOA:A1KB06,InterPro:IPR004368,InterPro:IPR006196,InterPro:IPR012340,InterPro:IPR022967,NCBI_GP:CAL96012.1;Name=CAL96012.1;Note=Translation initiation factor IF-1. No specific function has so far been attributed to this initiation factor%3B however it seems to stimulate more or less all the activities of the other two initiation factors IF-2 and IF-3.%3B~High confidence in function and specificity;gbkey=CDS;gene=infA2;product=translation initiation factor IF-1;protein_id=CAL96012.1;transl_table=11
AM406670.1	EMBL	gene	3732238	3733563	.	-	.	ID=gene3453;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=azo3397
AM406670.1	EMBL	CDS	3732238	3733563	.	-	0	ID=cds3393;Parent=gene3453;Dbxref=EnsemblGenomes-Gn:azo3397,EnsemblGenomes-Tr:CAL96013,GOA:A1KB07,InterPro:IPR002208,InterPro:IPR023201,InterPro:IPR026593,UniProtKB/TrEMBL:A1KB07,NCBI_GP:CAL96013.1;Name=CAL96013.1;Note=Preprotein translocase secY subunit. INVOLVED IN PROTEIN EXPORT. INTERACTS WITH SECA AND SECE TO ALLOW THE TRANSLOCATION OF PROTEINS ACROSS THE PLASMA MEMBRANE BY FORMING PART OF A CHANNEL. Pfam: secY probable 10 TMH no signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=secY;product=preprotein translocase SecY subunit;protein_id=CAL96013.1;transl_table=11
AM406670.1	EMBL	gene	3733578	3734012	.	-	.	ID=gene3454;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;locus_tag=azo3398
AM406670.1	EMBL	CDS	3733578	3734012	.	-	0	ID=cds3394;Parent=gene3454;Dbxref=EnsemblGenomes-Gn:azo3398,EnsemblGenomes-Tr:CAL96014,GOA:A1KB08,InterPro:IPR001196,InterPro:IPR005749,InterPro:IPR021131,NCBI_GP:CAL96014.1;Name=CAL96014.1;Note=50S ribosomal protein L15. This protein binds directly to 23S ribosomal RNA.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplO;product=50S ribosomal protein L15;protein_id=CAL96014.1;transl_table=11
AM406670.1	EMBL	gene	3734014	3734196	.	-	.	ID=gene3455;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=azo3399
AM406670.1	EMBL	CDS	3734014	3734196	.	-	0	ID=cds3395;Parent=gene3455;Dbxref=EnsemblGenomes-Gn:azo3399,EnsemblGenomes-Tr:CAL96015,GOA:A1KB09,InterPro:IPR005996,InterPro:IPR016082,InterPro:IPR018038,NCBI_GP:CAL96015.1;Name=CAL96015.1;Note=50S ribosomal protein L30.%3B~Function unclear;gbkey=CDS;gene=rpmD;product=50S ribosomal protein L30;protein_id=CAL96015.1;transl_table=11
AM406670.1	EMBL	gene	3734200	3734724	.	-	.	ID=gene3456;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=azo3400
AM406670.1	EMBL	CDS	3734200	3734724	.	-	0	ID=cds3396;Parent=gene3456;Dbxref=EnsemblGenomes-Gn:azo3400,EnsemblGenomes-Tr:CAL96016,GOA:A1KB10,InterPro:IPR000851,InterPro:IPR005324,InterPro:IPR005712,InterPro:IPR013810,InterPro:IPR014720,InterPro:IPR014721,InterPro:IPR018192,InterPro:IPR020568,NCBI_GP:CAL96016.1;Name=CAL96016.1;Note=30S ribosomal protein S5. Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsE;product=30S ribosomal protein S5;protein_id=CAL96016.1;transl_table=11
AM406670.1	EMBL	gene	3734737	3735090	.	-	.	ID=gene3457;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=azo3401
AM406670.1	EMBL	CDS	3734737	3735090	.	-	0	ID=cds3397;Parent=gene3457;Dbxref=EnsemblGenomes-Gn:azo3401,EnsemblGenomes-Tr:CAL96017,GOA:A1KB11,InterPro:IPR004389,InterPro:IPR005484,NCBI_GP:CAL96017.1;Name=CAL96017.1;Note=50S ribosomal protein L18. This is one of 3 proteins that mediate the attachment of the 5S RNA into the large ribosomal subunit.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplR;product=50S ribosomal protein L18;protein_id=CAL96017.1;transl_table=11
AM406670.1	EMBL	gene	3735102	3735635	.	-	.	ID=gene3458;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=azo3402
AM406670.1	EMBL	CDS	3735102	3735635	.	-	0	ID=cds3398;Parent=gene3458;Dbxref=EnsemblGenomes-Gn:azo3402,EnsemblGenomes-Tr:CAL96018,GOA:A1KB12,InterPro:IPR000702,InterPro:IPR002358,InterPro:IPR019906,InterPro:IPR020040,NCBI_GP:CAL96018.1;Name=CAL96018.1;Note=50S ribosomal protein L6. THIS PROTEIN BINDS DIRECTLY TO 23S RIBOSOMAL RNA AND IS LOCATED AT THE AMINOACYL-TRNA BINDING SITE OF THE PEPTIDYLTRANSFERASE CENTER.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplF;product=50S ribosomal protein L6;protein_id=CAL96018.1;transl_table=11
AM406670.1	EMBL	gene	3735645	3736040	.	-	.	ID=gene3459;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=azo3403
AM406670.1	EMBL	CDS	3735645	3736040	.	-	0	ID=cds3399;Parent=gene3459;Dbxref=EnsemblGenomes-Gn:azo3403,EnsemblGenomes-Tr:CAL96019,GOA:A1KB13,InterPro:IPR000630,NCBI_GP:CAL96019.1;Name=CAL96019.1;Note=30S ribosomal protein S8. One of the primary rRNA binding proteins it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsH;product=30S ribosomal protein S8;protein_id=CAL96019.1;transl_table=11
AM406670.1	EMBL	gene	3736054	3736359	.	-	.	ID=gene3460;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=azo3404
AM406670.1	EMBL	CDS	3736054	3736359	.	-	0	ID=cds3400;Parent=gene3460;Dbxref=EnsemblGenomes-Gn:azo3404,EnsemblGenomes-Tr:CAL96020,GOA:A1KB14,InterPro:IPR001209,InterPro:IPR018271,InterPro:IPR023036,NCBI_GP:CAL96020.1;Name=CAL96020.1;Note=30S ribosomal protein S14.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsN;product=30S ribosomal protein S14;protein_id=CAL96020.1;transl_table=11
AM406670.1	EMBL	gene	3736367	3736906	.	-	.	ID=gene3461;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=azo3405
AM406670.1	EMBL	CDS	3736367	3736906	.	-	0	ID=cds3401;Parent=gene3461;Dbxref=EnsemblGenomes-Gn:azo3405,EnsemblGenomes-Tr:CAL96021,GOA:A1KB15,InterPro:IPR002132,InterPro:IPR020929,InterPro:IPR020930,InterPro:IPR022803,NCBI_GP:CAL96021.1;Name=CAL96021.1;Note=50S ribosomal protein L5. This is one of 3 proteins that mediate the attachment of the 5S RNA into the large ribosomal subunit.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplE;product=50S ribosomal protein L5;protein_id=CAL96021.1;transl_table=11
AM406670.1	EMBL	gene	3736916	3737233	.	-	.	ID=gene3462;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=azo3406
AM406670.1	EMBL	CDS	3736916	3737233	.	-	0	ID=cds3402;Parent=gene3462;Dbxref=EnsemblGenomes-Gn:azo3406,EnsemblGenomes-Tr:CAL96022,GOA:A1KB16,InterPro:IPR003256,InterPro:IPR005824,InterPro:IPR005825,InterPro:IPR008991,InterPro:IPR014722,NCBI_GP:CAL96022.1;Name=CAL96022.1;Note=50S ribosomal protein L24 precursor%3B~High confidence in function and specificity;gbkey=CDS;gene=rplX;product=50S ribosomal protein L24;protein_id=CAL96022.1;transl_table=11
AM406670.1	EMBL	gene	3737246	3737614	.	-	.	ID=gene3463;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=azo3407
AM406670.1	EMBL	CDS	3737246	3737614	.	-	0	ID=cds3403;Parent=gene3463;Dbxref=EnsemblGenomes-Gn:azo3407,EnsemblGenomes-Tr:CAL96023,GOA:A1KB17,InterPro:IPR000218,InterPro:IPR005745,InterPro:IPR019972,InterPro:IPR023571,NCBI_GP:CAL96023.1;Name=CAL96023.1;Note=50S ribosomal protein L14.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplN;product=50S ribosomal protein L14;protein_id=CAL96023.1;transl_table=11
AM406670.1	EMBL	gene	3737766	3738035	.	-	.	ID=gene3464;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=azo3408
AM406670.1	EMBL	CDS	3737766	3738035	.	-	0	ID=cds3404;Parent=gene3464;Dbxref=EnsemblGenomes-Gn:azo3408,EnsemblGenomes-Tr:CAL96024,GOA:A1KB18,InterPro:IPR000266,InterPro:IPR012340,InterPro:IPR019979,InterPro:IPR019984,NCBI_GP:CAL96024.1;Name=CAL96024.1;Note=30S ribosomal protein S17. PROTEIN S17 BINDS SPECIFICALLY TO THE 5 END OF 16S RIBOSOMAL RNA. S17 IS THOUGHT TO BE INVOLVED IN THE RECOGNITION OF TERMINATION CODONS.%3B~Function unclear;gbkey=CDS;gene=rpsQ;product=30S ribosomal protein S17;protein_id=CAL96024.1;transl_table=11
AM406670.1	EMBL	gene	3738032	3738226	.	-	.	ID=gene3465;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=azo3409
AM406670.1	EMBL	CDS	3738032	3738226	.	-	0	ID=cds3405;Parent=gene3465;Dbxref=EnsemblGenomes-Gn:azo3409,EnsemblGenomes-Tr:CAL96025,GOA:A1KB19,InterPro:IPR001854,InterPro:IPR018254,NCBI_GP:CAL96025.1;Name=CAL96025.1;Note=50S ribosomal protein L29.%3B~Family membership;gbkey=CDS;gene=rpmC;product=50S ribosomal protein L29;protein_id=CAL96025.1;transl_table=11
AM406670.1	EMBL	gene	3738229	3738642	.	-	.	ID=gene3466;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=azo3410
AM406670.1	EMBL	CDS	3738229	3738642	.	-	0	ID=cds3406;Parent=gene3466;Dbxref=EnsemblGenomes-Gn:azo3410,EnsemblGenomes-Tr:CAL96026,GOA:A1KB20,InterPro:IPR000114,InterPro:IPR016180,InterPro:IPR020798,NCBI_GP:CAL96026.1;Name=CAL96026.1;Note=50S ribosomal protein L16. This protein binds directly to 23S ribosomal RNA and is located at the a site of the peptidyltransferase center.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplP;product=50S ribosomal protein L16;protein_id=CAL96026.1;transl_table=11
AM406670.1	EMBL	gene	3738642	3739424	.	-	.	ID=gene3467;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=azo3411
AM406670.1	EMBL	CDS	3738642	3739424	.	-	0	ID=cds3407;Parent=gene3467;Dbxref=EnsemblGenomes-Gn:azo3411,EnsemblGenomes-Tr:CAL96027,GOA:A1KB21,InterPro:IPR001351,InterPro:IPR004044,InterPro:IPR004087,InterPro:IPR005704,InterPro:IPR009019,InterPro:IPR015946,InterPro:IPR018280,NCBI_GP:CAL96027.1;Name=CAL96027.1;Note=30S ribosomal protein S3. Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome positioning it for translation.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsC;product=30S ribosomal protein S3;protein_id=CAL96027.1;transl_table=11
AM406670.1	EMBL	gene	3739434	3739763	.	-	.	ID=gene3468;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;locus_tag=azo3412
AM406670.1	EMBL	CDS	3739434	3739763	.	-	0	ID=cds3408;Parent=gene3468;Dbxref=EnsemblGenomes-Gn:azo3412,EnsemblGenomes-Tr:CAL96028,GOA:A1KB22,InterPro:IPR001063,InterPro:IPR005727,InterPro:IPR018260,NCBI_GP:CAL96028.1;Name=CAL96028.1;Note=50S ribosomal protein L22.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplV;product=50S ribosomal protein L22;protein_id=CAL96028.1;transl_table=11
AM406670.1	EMBL	gene	3739773	3740048	.	-	.	ID=gene3469;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=azo3413
AM406670.1	EMBL	CDS	3739773	3740048	.	-	0	ID=cds3409;Parent=gene3469;Dbxref=EnsemblGenomes-Gn:azo3413,EnsemblGenomes-Tr:CAL96029,GOA:A1KB23,InterPro:IPR002222,InterPro:IPR005732,InterPro:IPR020934,InterPro:IPR023575,NCBI_GP:CAL96029.1;Name=CAL96029.1;Note=30S ribosomal protein S19. Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsS;product=30S ribosomal protein S19;protein_id=CAL96029.1;transl_table=11
AM406670.1	EMBL	gene	3740059	3740886	.	-	.	ID=gene3470;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=azo3414
AM406670.1	EMBL	CDS	3740059	3740886	.	-	0	ID=cds3410;Parent=gene3470;Dbxref=EnsemblGenomes-Gn:azo3414,EnsemblGenomes-Tr:CAL96030,GOA:A1KB24,InterPro:IPR002171,InterPro:IPR005880,InterPro:IPR008991,InterPro:IPR012340,InterPro:IPR014722,InterPro:IPR014726,InterPro:IPR022666,InterPro:IPR022669,InterPro:IPR022671,NCBI_GP:CAL96030.1;Name=CAL96030.1;Note=50S ribosomal protein L2. This protein is a primary 23s rRNA-binding protein. It has peptidyltransferase activity.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplB;product=50S ribosomal protein L2;protein_id=CAL96030.1;transl_table=11
AM406670.1	EMBL	gene	3740893	3741198	.	-	.	ID=gene3471;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=azo3415
AM406670.1	EMBL	CDS	3740893	3741198	.	-	0	ID=cds3411;Parent=gene3471;Dbxref=EnsemblGenomes-Gn:azo3415,EnsemblGenomes-Tr:CAL96031,GOA:A1KB25,InterPro:IPR012677,InterPro:IPR012678,InterPro:IPR013025,NCBI_GP:CAL96031.1;Name=CAL96031.1;Note=50S ribosomal protein L23. BINDS TO A SPECIFIC REGION ON THE 23S RRNA.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplW;product=50S ribosomal protein L23;protein_id=CAL96031.1;transl_table=11
AM406670.1	EMBL	gene	3741195	3741815	.	-	.	ID=gene3472;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=azo3416
AM406670.1	EMBL	CDS	3741195	3741815	.	-	0	ID=cds3412;Parent=gene3472;Dbxref=EnsemblGenomes-Gn:azo3416,EnsemblGenomes-Tr:CAL96032,GOA:A1KB26,InterPro:IPR002136,InterPro:IPR013005,InterPro:IPR023574,NCBI_GP:CAL96032.1;Name=CAL96032.1;Note=50S ribosomal protein L4. PROTEIN L4 IS ALSO A TRANSLATIONAL REPRESSOR PROTEIN IT CONTROLS THE TRANSLATION OF THE S10 OPERON (TO WHICH BELONG L4) BY BINDING TO ITS MRNA.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplD;product=50S ribosomal protein L4;protein_id=CAL96032.1;transl_table=11
AM406670.1	EMBL	gene	3741830	3742468	.	-	.	ID=gene3473;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=azo3417
AM406670.1	EMBL	CDS	3741830	3742468	.	-	0	ID=cds3413;Parent=gene3473;Dbxref=EnsemblGenomes-Gn:azo3417,EnsemblGenomes-Tr:CAL96033,GOA:A1KB27,InterPro:IPR000597,InterPro:IPR009000,InterPro:IPR019926,InterPro:IPR019927,NCBI_GP:CAL96033.1;Name=CAL96033.1;Note=50S ribosomal protein L3. This protein binds directly to 23S ribosomal RNA and may participate in the formation of the peptidyltransferase center of the ribosome%3B~High confidence in function and specificity;gbkey=CDS;gene=rplC;product=50S ribosomal protein L3;protein_id=CAL96033.1;transl_table=11
AM406670.1	EMBL	gene	3742583	3742894	.	-	.	ID=gene3474;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=azo3418
AM406670.1	EMBL	CDS	3742583	3742894	.	-	0	ID=cds3414;Parent=gene3474;Dbxref=EnsemblGenomes-Gn:azo3418,EnsemblGenomes-Tr:CAL96034,GOA:A1KB28,InterPro:IPR001848,InterPro:IPR018268,InterPro:IPR027486,NCBI_GP:CAL96034.1;Name=CAL96034.1;Note=30S ribosomal protein S10. Involved in the binding of tRNA to the ribosomes.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsJ;product=30S ribosomal protein S10;protein_id=CAL96034.1;transl_table=11
AM406670.1	EMBL	gene	3742952	3744142	.	-	.	ID=gene3475;Name=tufA;gbkey=Gene;gene=tufA;gene_biotype=protein_coding;locus_tag=azo3419
AM406670.1	EMBL	CDS	3742952	3744142	.	-	0	ID=cds3415;Parent=gene3475;Dbxref=EnsemblGenomes-Gn:azo3419,EnsemblGenomes-Tr:CAL96035,GOA:A1KB29,InterPro:IPR000795,InterPro:IPR004160,InterPro:IPR004161,InterPro:IPR004541,InterPro:IPR005225,InterPro:IPR009000,InterPro:IPR009001,InterPro:IPR027417,NCBI_GP:CAL96035.1;Name=CAL96035.1;Note=Elongation factor Tu (EF-Tu). This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.%3B~High confidence in function and specificity;gbkey=CDS;gene=tufA;product=elongation factor Tu;protein_id=CAL96035.1;transl_table=11
AM406670.1	EMBL	gene	3744170	3746266	.	-	.	ID=gene3476;Name=fusA2;gbkey=Gene;gene=fusA2;gene_biotype=protein_coding;locus_tag=azo3420
AM406670.1	EMBL	CDS	3744170	3746266	.	-	0	ID=cds3416;Parent=gene3476;Dbxref=EnsemblGenomes-Gn:azo3420,EnsemblGenomes-Tr:CAL96036,GOA:A1KB30,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR004540,InterPro:IPR005225,InterPro:IPR005517,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR027417,NCBI_GP:CAL96036.1;Name=CAL96036.1;Note=Elongation factor EF-G . Homology to FusA of E. coli of 71%25 (sprot|EFG_ECOLI(SRS)) This protein promotes the GTP-dependent translocation of the nascent protein chain from the A-site to the P-site of the ribosome. Interpro: Elongation factor G%2C C-terminus (IPR000640)%3B Elongation factor Tu domain 2 (IPR004161)%3B GTP-binding elongation factor (IPR000795)%3B Translation elongation factor G (IPR004540) Tigrfam: EF-G: translation elongation factor G Pfam: Elongation factor Tu domain 2%3B Elongation factor Tu GTP binding domain%3B Elongation factor G C-terminus no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fusA2;product=elongation factor EF-G;protein_id=CAL96036.1;transl_table=11
AM406670.1	EMBL	gene	3746378	3746848	.	-	.	ID=gene3477;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=azo3421
AM406670.1	EMBL	CDS	3746378	3746848	.	-	0	ID=cds3417;Parent=gene3477;Dbxref=EnsemblGenomes-Gn:azo3421,EnsemblGenomes-Tr:CAL96037,GOA:A1KB31,InterPro:IPR000235,InterPro:IPR005717,InterPro:IPR020606,InterPro:IPR023798,NCBI_GP:CAL96037.1;Name=CAL96037.1;Note=30S ribosomal protein S7. One of the primary rRNA binding proteins it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center probably blocks exit of the E-site tRNA%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsG;product=30S ribosomal protein S7;protein_id=CAL96037.1;transl_table=11
AM406670.1	EMBL	gene	3746882	3747259	.	-	.	ID=gene3478;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;locus_tag=azo3422
AM406670.1	EMBL	CDS	3746882	3747259	.	-	0	ID=cds3418;Parent=gene3478;Dbxref=EnsemblGenomes-Gn:azo3422,EnsemblGenomes-Tr:CAL96038,GOA:A1KB32,InterPro:IPR005679,InterPro:IPR006032,InterPro:IPR012340,NCBI_GP:CAL96038.1;Name=CAL96038.1;Note=30S ribosomal protein S12. Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8 S12 and S17 appears to hold together the shoulder and platform of the 30S subunit%3B~High confidence in function and specificity;gbkey=CDS;gene=rpsL;product=30S ribosomal protein S12;protein_id=CAL96038.1;transl_table=11
AM406670.1	EMBL	gene	3747393	3751607	.	-	.	ID=gene3479;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;locus_tag=azo3423
AM406670.1	EMBL	CDS	3747393	3751607	.	-	0	ID=cds3419;Parent=gene3479;Dbxref=EnsemblGenomes-Gn:azo3423,EnsemblGenomes-Tr:CAL96039,GOA:A1KB33,InterPro:IPR000722,InterPro:IPR006592,InterPro:IPR007066,InterPro:IPR007080,InterPro:IPR007081,InterPro:IPR007083,InterPro:IPR012754,NCBI_GP:CAL96039.1;Name=CAL96039.1;Note=DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (Transcriptase beta chain) (RNA polymerase beta subunit)%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=rpoC;product=DNA-directed RNA polymerase;protein_id=CAL96039.1;transl_table=11
AM406670.1	EMBL	gene	3751682	3755815	.	-	.	ID=gene3480;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=azo3424
AM406670.1	EMBL	CDS	3751682	3755815	.	-	0	ID=cds3420;Parent=gene3480;Dbxref=EnsemblGenomes-Gn:azo3424,EnsemblGenomes-Tr:CAL96040,GOA:A1KB34,InterPro:IPR007120,InterPro:IPR007121,InterPro:IPR007641,InterPro:IPR007642,InterPro:IPR007644,InterPro:IPR007645,InterPro:IPR010243,InterPro:IPR014724,InterPro:IPR015712,InterPro:IPR019462,NCBI_GP:CAL96040.1;Name=CAL96040.1;Note=DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (Transcriptase beta chain) (RNA polymerase beta subunit)%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=rpoB;product=DNA-directed RNA polymerase;protein_id=CAL96040.1;transl_table=11
AM406670.1	EMBL	gene	3755976	3756353	.	-	.	ID=gene3481;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=azo3425
AM406670.1	EMBL	CDS	3755976	3756353	.	-	0	ID=cds3421;Parent=gene3481;Dbxref=EnsemblGenomes-Gn:azo3425,EnsemblGenomes-Tr:CAL96041,GOA:A1KB35,InterPro:IPR000206,InterPro:IPR008932,InterPro:IPR013823,InterPro:IPR014719,NCBI_GP:CAL96041.1;Name=CAL96041.1;Note=50S ribosomal protein L7/L12. Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplL;product=50S ribosomal subunit protein L7/L12;protein_id=CAL96041.1;transl_table=11
AM406670.1	EMBL	gene	3756405	3756908	.	-	.	ID=gene3482;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=azo3426
AM406670.1	EMBL	CDS	3756405	3756908	.	-	0	ID=cds3422;Parent=gene3482;Dbxref=EnsemblGenomes-Gn:azo3426,EnsemblGenomes-Tr:CAL96042,GOA:A1KB36,InterPro:IPR001790,InterPro:IPR022973,NCBI_GP:CAL96042.1;Name=CAL96042.1;Note=50S ribosomal protein L10.%3B~High confidence in function and specificity;gbkey=CDS;gene=rplJ;product=50S ribosomal protein L10;protein_id=CAL96042.1;transl_table=11
AM406670.1	EMBL	gene	3757142	3757837	.	-	.	ID=gene3483;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=azo3427
AM406670.1	EMBL	CDS	3757142	3757837	.	-	0	ID=cds3423;Parent=gene3483;Dbxref=EnsemblGenomes-Gn:azo3427,EnsemblGenomes-Tr:CAL96043,GOA:A1KB37,InterPro:IPR002143,InterPro:IPR005878,InterPro:IPR016094,InterPro:IPR016095,InterPro:IPR023673,InterPro:IPR023674,InterPro:IPR028364,NCBI_GP:CAL96043.1;Name=CAL96043.1;Note=50S ribosomal protein L1. This protein binds directly to 23S rRNA and is located in the neighborhood of the site where elongation factor Tu is bound to the ribosome (By similarity).%3B~High confidence in function and specificity;gbkey=CDS;gene=rplA;product=50S ribosomal protein L1;protein_id=CAL96043.1;transl_table=11
AM406670.1	EMBL	gene	3757840	3758271	.	-	.	ID=gene3484;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;locus_tag=azo3428
AM406670.1	EMBL	CDS	3757840	3758271	.	-	0	ID=cds3424;Parent=gene3484;Dbxref=EnsemblGenomes-Gn:azo3428,EnsemblGenomes-Tr:CAL96044,GOA:A1KB38,InterPro:IPR000911,InterPro:IPR006519,InterPro:IPR020783,InterPro:IPR020784,InterPro:IPR020785,NCBI_GP:CAL96044.1;Name=CAL96044.1;Note=50S ribosomal protein L11. This protein binds directly to 23S ribosomal RNA (By similarity). InterPro: Ribosomal protein L11%3B~High confidence in function and specificity;gbkey=CDS;gene=rplK;product=50S ribosomal protein L11;protein_id=CAL96044.1;transl_table=11
AM406670.1	EMBL	gene	3758376	3758915	.	-	.	ID=gene3485;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=azo3429
AM406670.1	EMBL	CDS	3758376	3758915	.	-	0	ID=cds3425;Parent=gene3485;Dbxref=EnsemblGenomes-Gn:azo3429,EnsemblGenomes-Tr:CAL96045,GOA:A1KB39,InterPro:IPR001062,InterPro:IPR005824,InterPro:IPR006645,InterPro:IPR008991,InterPro:IPR014722,InterPro:IPR015869,UniProtKB/TrEMBL:A1KB39,NCBI_GP:CAL96045.1;Name=CAL96045.1;Note=Transcription antitermination protein NusG. Influences transcription termination and antitermination. Acts as a component of the transcription complex and interacts with the termination factor rho and RNA polymerase (By similarity). Belongs to the nusG family. nusG: transcription antitermination fact 65%25 1. PF02357 NusG%3B 1. SM00739%3B KOW%3B 1. SM00738%3B NGN%3B 1. TIGR00922%3B nusG%3B 1. TIGR01956%3B NusG_myco%3B 1. Together with secE in one operon%3B~High confidence in function and specificity;gbkey=CDS;gene=nusG;product=putative transcription antitermination protein;protein_id=CAL96045.1;transl_table=11
AM406670.1	EMBL	gene	3758912	3759259	.	-	.	ID=gene3486;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=azo3430
AM406670.1	EMBL	CDS	3758912	3759259	.	-	0	ID=cds3426;Parent=gene3486;Dbxref=EnsemblGenomes-Gn:azo3430,EnsemblGenomes-Tr:CAL96046,GOA:A1KB40,InterPro:IPR001901,InterPro:IPR005807,InterPro:IPR022943,UniProtKB/TrEMBL:A1KB40,NCBI_GP:CAL96046.1;Name=CAL96046.1;Note=Preprotein translocase secE subunit. Essential for protein export (By similarity). SecE%2C part of the main SecYEG translocase complex%2C is ~~106 residues in length%2Cand spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG%2C SecE forms a multimeric channel through which preproteins are translocated%2C using both proton motive forces and ATP-driven secretion. Pfam: SecE/sec61 gamma subunit of protein translocation Tigrfam: 3a0501s06: SecE subunit of protein tran%3B~High confidence in function and specificity;gbkey=CDS;gene=secE;product=preprotein translocase%2C SecE subunit;protein_id=CAL96046.1;transl_table=11
AM406670.1	EMBL	gene	3759284	3759359	.	-	.	ID=gene3487;Name=tRNA-Trp;gbkey=Gene;gene=tRNA-Trp;gene_biotype=tRNA;locus_tag=azo_tRNA_0052
AM406670.1	EMBL	tRNA	3759284	3759359	.	-	.	ID=rna60;Parent=gene3487;anticodon=(pos:complement(3759324..3759326));gbkey=tRNA;gene=tRNA-Trp;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Trp
AM406670.1	EMBL	exon	3759284	3759359	.	-	.	ID=id61;Parent=rna60;anticodon=(pos:complement(3759324..3759326));gbkey=tRNA;gene=tRNA-Trp;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Trp
AM406670.1	EMBL	gene	3759422	3760612	.	-	.	ID=gene3488;Name=tufB;gbkey=Gene;gene=tufB;gene_biotype=protein_coding;locus_tag=azo3431
AM406670.1	EMBL	CDS	3759422	3760612	.	-	0	ID=cds3427;Parent=gene3488;Dbxref=EnsemblGenomes-Gn:azo3431,EnsemblGenomes-Tr:CAL96047,GOA:A1KB29,InterPro:IPR000795,InterPro:IPR004160,InterPro:IPR004161,InterPro:IPR004541,InterPro:IPR005225,InterPro:IPR009000,InterPro:IPR009001,InterPro:IPR027417,NCBI_GP:CAL96047.1;Name=CAL96047.1;Note=Elongation factor Tu (EF-Tu). This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.%3B~High confidence in function and specificity;gbkey=CDS;gene=tufB;product=elongation factor Tu;protein_id=CAL96047.1;transl_table=11
AM406670.1	EMBL	gene	3760686	3760760	.	-	.	ID=gene3489;Name=tRNA-Thr;gbkey=Gene;gene=tRNA-Thr;gene_biotype=tRNA;locus_tag=azo_tRNA_0053
AM406670.1	EMBL	tRNA	3760686	3760760	.	-	.	ID=rna61;Parent=gene3489;anticodon=(pos:complement(3760726..3760728));gbkey=tRNA;gene=tRNA-Thr;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Thr
AM406670.1	EMBL	exon	3760686	3760760	.	-	.	ID=id62;Parent=rna61;anticodon=(pos:complement(3760726..3760728));gbkey=tRNA;gene=tRNA-Thr;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Thr
AM406670.1	EMBL	gene	3760782	3760855	.	-	.	ID=gene3490;Name=tRNA-Gly;gbkey=Gene;gene=tRNA-Gly;gene_biotype=tRNA;locus_tag=azo_tRNA_0054
AM406670.1	EMBL	tRNA	3760782	3760855	.	-	.	ID=rna62;Parent=gene3490;anticodon=(pos:complement(3760821..3760823));gbkey=tRNA;gene=tRNA-Gly;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Gly
AM406670.1	EMBL	exon	3760782	3760855	.	-	.	ID=id63;Parent=rna62;anticodon=(pos:complement(3760821..3760823));gbkey=tRNA;gene=tRNA-Gly;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Gly
AM406670.1	EMBL	gene	3760941	3761025	.	-	.	ID=gene3491;Name=tRNA-Tyr;gbkey=Gene;gene=tRNA-Tyr;gene_biotype=tRNA;locus_tag=azo_tRNA_0055
AM406670.1	EMBL	tRNA	3760941	3761025	.	-	.	ID=rna63;Parent=gene3491;anticodon=(pos:complement(3760989..3760991));gbkey=tRNA;gene=tRNA-Tyr;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Tyr
AM406670.1	EMBL	exon	3760941	3761025	.	-	.	ID=id64;Parent=rna63;anticodon=(pos:complement(3760989..3760991));gbkey=tRNA;gene=tRNA-Tyr;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Tyr
AM406670.1	EMBL	gene	3761183	3762592	.	+	.	ID=gene3492;Name=dld;gbkey=Gene;gene=dld;gene_biotype=protein_coding;locus_tag=azo3432
AM406670.1	EMBL	CDS	3761183	3762592	.	+	0	ID=cds3428;Parent=gene3492;Dbxref=EnsemblGenomes-Gn:azo3432,EnsemblGenomes-Tr:CAL96048,GOA:A1KB42,InterPro:IPR004113,InterPro:IPR006094,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,InterPro:IPR016171,UniProtKB/TrEMBL:A1KB42,NCBI_GP:CAL96048.1;Name=CAL96048.1;Note=D-lactate dehydrogenase. Homology to dld of Mus musculus of 52%25 (trembl|Q8CIV4) CATALYZE THE STEREOSPECIFIC OXIDATION OF D-LACTATE TO PYRUVATE. InterPro: FAD linked oxidase C-terminal (IPR004113)%3B FAD linked oxidase%2C N-terminal (IPR006093) Pfam: FAD binding damian%3B FAD linked oxidases%2C C-terminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=dld;product=probable D-lactate dehydrogenase;protein_id=CAL96048.1;transl_table=11
AM406670.1	EMBL	gene	3762769	3766365	.	+	.	ID=gene3493;Name=azo3433;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3433
AM406670.1	EMBL	CDS	3762769	3766365	.	+	0	ID=cds3429;Parent=gene3493;Dbxref=EnsemblGenomes-Gn:azo3433,EnsemblGenomes-Tr:CAL96049,GOA:A1KB43,InterPro:IPR002869,InterPro:IPR009014,InterPro:IPR011766,InterPro:IPR012110,InterPro:IPR017896,InterPro:IPR019752,InterPro:IPR029061,UniProtKB/TrEMBL:A1KB43,NCBI_GP:CAL96049.1;Name=CAL96049.1;Note=Conserved hypothetical pyruvate ferredoxin/flavodoxin oxidoreductase. Homology to rsc3122 of R. solanacearum (trembl|Q8XUR3). CATALYZES THE FERREDOXIN-DEPENDENT OXIDATIVE DECARBOXYLATION OF ARYLPYRUVATES (BY SIMILARITY). InterPro: Pyruvate ferredoxin/flavodoxin oxidoreductase (IPR002869). Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase. no singal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical pyruvate ferredoxin/flavodoxin oxidoreductase;protein_id=CAL96049.1;transl_table=11
AM406670.1	EMBL	gene	3766433	3767197	.	+	.	ID=gene3494;Name=azo3434;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3434
AM406670.1	EMBL	CDS	3766433	3767197	.	+	0	ID=cds3430;Parent=gene3494;Dbxref=EnsemblGenomes-Gn:azo3434,EnsemblGenomes-Tr:CAL96050,InterPro:IPR029063,UniProtKB/TrEMBL:A1KB44,NCBI_GP:CAL96050.1;Name=CAL96050.1;Note=Conserved hypothetical membrane protein. Similar to TREMBL:Q82Y44 (38%25 identity)%3B TREMBL:Q7NWG1 (37%25 identity). TMHMM reporting four transmembrane helices. signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96050.1;transl_table=11
AM406670.1	EMBL	gene	3767294	3767998	.	+	.	ID=gene3495;Name=azo3435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3435
AM406670.1	EMBL	CDS	3767294	3767998	.	+	0	ID=cds3431;Parent=gene3495;Dbxref=EnsemblGenomes-Gn:azo3435,EnsemblGenomes-Tr:CAL96051,InterPro:IPR002586,InterPro:IPR027417,UniProtKB/TrEMBL:A1KB45,NCBI_GP:CAL96051.1;Name=CAL96051.1;Note=Hypothetical protein predicted by Glimmer/Critica no homology of the entire protein to the data bank Pfam: CobQ/CobB/MinD/ParA nucleotide binding domain no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96051.1;transl_table=11
AM406670.1	EMBL	gene	3768050	3768676	.	-	.	ID=gene3496;Name=flcA;gbkey=Gene;gene=flcA;gene_biotype=protein_coding;locus_tag=azo3436
AM406670.1	EMBL	CDS	3768050	3768676	.	-	0	ID=cds3432;Parent=gene3496;Dbxref=EnsemblGenomes-Gn:azo3436,EnsemblGenomes-Tr:CAL96052,GOA:A1KB46,InterPro:IPR000792,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1KB46,NCBI_GP:CAL96052.1;Name=CAL96052.1;Note=Probable DNA-binding response regulator%2C LuxR family%2C%3B~Specificity unclear;gbkey=CDS;gene=flcA;product=probable DNA-binding response regulator%2C LuxR family;protein_id=CAL96052.1;transl_table=11
AM406670.1	EMBL	gene	3768936	3769865	.	+	.	ID=gene3497;Name=azo3437;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3437
AM406670.1	EMBL	CDS	3768936	3769865	.	+	0	ID=cds3433;Parent=gene3497;Dbxref=EnsemblGenomes-Gn:azo3437,EnsemblGenomes-Tr:CAL96053,InterPro:IPR007487,UniProtKB/TrEMBL:A1KB47,NCBI_GP:CAL96053.1;Name=CAL96053.1;Note=Conserved hypothetical secreted protein. Homology to ebA3798 of Azoarcus sp. EbN1 of 42%25 (gnl|keqq|eba:ebA3798(KEGG)). Pfam: DUF534. This is a family of putative secreted proteins of unknown function. signal peptide. no TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96053.1;transl_table=11
AM406670.1	EMBL	gene	3769862	3771781	.	+	.	ID=gene3498;Name=vsrB;gbkey=Gene;gene=vsrB;gene_biotype=protein_coding;locus_tag=azo3438
AM406670.1	EMBL	CDS	3769862	3771781	.	+	0	ID=cds3434;Parent=gene3498;Dbxref=EnsemblGenomes-Gn:azo3438,EnsemblGenomes-Tr:CAL96054,GOA:A1KB48,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR011006,UniProtKB/TrEMBL:A1KB48,NCBI_GP:CAL96054.1;Name=CAL96054.1;Note=Putative virulence regulator protein%2CATPbind_ATPase. IPR005467%3B His_kinase. IPR003661%3B His_kinA_N. IPR003660%3B HAMP. IPR001789%3B Response_reg. Pfam: PF02518%3B HATPase_c. PF00512%3B HisKA. PF00672%3B HAMP. PF00072%3B Response_reg. SMART: SM00387%3B HATPase_c. SM00388%3B HisKA. SM00304%3B HAMP. SM00448%3B REC. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.%3B~Specificity unclear;gbkey=CDS;gene=vsrB;product=putative virulence regulator protein;protein_id=CAL96054.1;transl_table=11
AM406670.1	EMBL	gene	3771856	3772257	.	+	.	ID=gene3499;Name=azo3439;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3439
AM406670.1	EMBL	CDS	3771856	3772257	.	+	0	ID=cds3435;Parent=gene3499;Dbxref=EnsemblGenomes-Gn:azo3439,EnsemblGenomes-Tr:CAL96055,UniProtKB/TrEMBL:A1KB49,NCBI_GP:CAL96055.1;Name=CAL96055.1;Note=conserved hypothetical protein. Homology to ebB122 of Azoarcus sp. EbN1 of 65%25 (gnl|keqq|eba:ebB122(KEGG)). No domains predicted. NO signal peptide present. No TMH present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96055.1;transl_table=11
AM406670.1	EMBL	gene	3772274	3773446	.	-	.	ID=gene3500;Name=azo3440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3440
AM406670.1	EMBL	CDS	3772274	3773446	.	-	0	ID=cds3436;Parent=gene3500;Dbxref=EnsemblGenomes-Gn:azo3440,EnsemblGenomes-Tr:CAL96056,GOA:A1KB50,InterPro:IPR003673,InterPro:IPR023606,UniProtKB/TrEMBL:A1KB50,NCBI_GP:CAL96056.1;Name=CAL96056.1;Note=Conserved hypothetical protein. Homology to pa1188 of P. aeruginosa of 40%25 (trembl|Q9I4F0). InterPro: CAIB/BAIF family (IPR003673). Pfam: CAIB/BAIF family. no signal peptide. no TMHs. TIGR00106: conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96056.1;transl_table=11
AM406670.1	EMBL	gene	3773552	3774784	.	-	.	ID=gene3501;Name=azo3441;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3441
AM406670.1	EMBL	CDS	3773552	3774784	.	-	0	ID=cds3437;Parent=gene3501;Dbxref=EnsemblGenomes-Gn:azo3441,EnsemblGenomes-Tr:CAL96057,GOA:A1KB51,InterPro:IPR000873,InterPro:IPR028154,UniProtKB/TrEMBL:A1KB51,NCBI_GP:CAL96057.1;Name=CAL96057.1;Note=Phenylacetate-coenzyme A ligase (Phenylacetyl-CoA ligase) (PA-CoA ligase). CATALYZES THE ACTIVATION OF PHENYLACETIC ACID TO PHENYLACETYL-COA. InterPro: AMP-dependent synthetase and ligase%3B~Function unclear;gbkey=CDS;product=Phenylacetate--CoA ligase;protein_id=CAL96057.1;transl_table=11
AM406670.1	EMBL	gene	3774879	3775721	.	-	.	ID=gene3502;Name=livF;gbkey=Gene;gene=livF;gene_biotype=protein_coding;locus_tag=azo3442
AM406670.1	EMBL	CDS	3774879	3775721	.	-	0	ID=cds3438;Parent=gene3502;Dbxref=EnsemblGenomes-Gn:azo3442,EnsemblGenomes-Tr:CAL96058,GOA:A1KB52,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1KB52,NCBI_GP:CAL96058.1;Name=CAL96058.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q7WQU7 (73%25) and to trembl|Q89HM3 (54%25). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop)%3B~Specificity unclear;gbkey=CDS;gene=livF;product=ABC transporter ATP-binding protein;protein_id=CAL96058.1;transl_table=11
AM406670.1	EMBL	gene	3775809	3777131	.	-	.	ID=gene3503;Name=azo3443;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3443
AM406670.1	EMBL	CDS	3775809	3777131	.	-	0	ID=cds3439;Parent=gene3503;Dbxref=EnsemblGenomes-Gn:azo3443,EnsemblGenomes-Tr:CAL96059,GOA:A1KB53,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1KB53,NCBI_GP:CAL96059.1;Name=CAL96059.1;Note=Conserved hypothetical ABC-type branched-chain amino acid transport systems%2C periplasmic component. Homology to Raeut03002728 of R. eutropha of 58%25 (gi|45519901|ref|ZP_00171452.1|(NCBI ENTREZ)). Pfam: Receptor family ligand binding region. This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Signal peptide present. TMH in signal peptide.%3B~Family membership;gbkey=CDS;product=conserved hypothetical ABC-type branched-chain amino acid transport systems%2C periplasmic component;protein_id=CAL96059.1;transl_table=11
AM406670.1	EMBL	gene	3777218	3778285	.	-	.	ID=gene3504;Name=livM4;gbkey=Gene;gene=livM4;gene_biotype=protein_coding;locus_tag=azo3444
AM406670.1	EMBL	CDS	3777218	3778285	.	-	0	ID=cds3440;Parent=gene3504;Dbxref=EnsemblGenomes-Gn:azo3444,EnsemblGenomes-Tr:CAL96060,GOA:A1KB54,InterPro:IPR001851,UniProtKB/TrEMBL:A1KB54,NCBI_GP:CAL96060.1;Name=CAL96060.1;Note=Putative branched-chain amino acid transport permease. Homology to livM of E. coli of 27%25. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. Pfam: Branched-chain amino acid transport system no signal peptide probalbe 10 TMHs%3B~Specificity unclear;gbkey=CDS;gene=livM4;product=putative branched-chain amino acid transport permease;protein_id=CAL96060.1;transl_table=11
AM406670.1	EMBL	gene	3778448	3779374	.	-	.	ID=gene3505;Name=azo3445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3445
AM406670.1	EMBL	CDS	3778448	3779374	.	-	0	ID=cds3441;Parent=gene3505;Dbxref=EnsemblGenomes-Gn:azo3445,EnsemblGenomes-Tr:CAL96061,GOA:A1KB55,InterPro:IPR001851,UniProtKB/TrEMBL:A1KB55,NCBI_GP:CAL96061.1;Name=CAL96061.1;Note=Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q881A7 (65%25) and to sprot|LIVH_ECOLI (26%25). Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) TMHMM reporting eight Tmhelix. SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease protein;protein_id=CAL96061.1;transl_table=11
AM406670.1	EMBL	gene	3779397	3780221	.	-	.	ID=gene3506;Name=azo3446;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3446
AM406670.1	EMBL	CDS	3779397	3780221	.	-	0	ID=cds3442;Parent=gene3506;Dbxref=EnsemblGenomes-Gn:azo3446,EnsemblGenomes-Tr:CAL96062,GOA:A1KB56,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1KB56,NCBI_GP:CAL96062.1;Name=CAL96062.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q881A6 (55%25)%2C to sprot|BRAF_PSEAE (34%25) and to sprot|LIVG_ECOLI (33%25). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop)%3B~Specificity unclear;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL96062.1;transl_table=11
AM406670.1	EMBL	gene	3780259	3782268	.	-	.	ID=gene3507;Name=acS2;gbkey=Gene;gene=acS2;gene_biotype=protein_coding;locus_tag=azo3447
AM406670.1	EMBL	CDS	3780259	3782268	.	-	0	ID=cds3443;Parent=gene3507;Dbxref=EnsemblGenomes-Gn:azo3447,EnsemblGenomes-Tr:CAL96063,GOA:A1KB57,InterPro:IPR000873,InterPro:IPR020845,UniProtKB/TrEMBL:A1KB57,NCBI_GP:CAL96063.1;Name=CAL96063.1;Note=Function:-Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle%2C and biosynthetic compounds via the glyoxylate shunt. Acetylates cheY%2C the response regulator involved in flagellar movement and chemotaxis. Activity:- ATP + acetate + CoA %3D AMP + diphosphate + acetyl-CoA Entry name SWISSPROT:ACSA_ECOLI InterPro:- IPR000873%3B AMP-bind. Pfam:- PF00501%3B AMP-binding%3B 1. Identities %3D 114/506 (22%25) Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=acS2;product=putative Acetyl-coenzyme A synthetase;protein_id=CAL96063.1;transl_table=11
AM406670.1	EMBL	gene	3782641	3783468	.	+	.	ID=gene3508;Name=azo3448;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3448
AM406670.1	EMBL	CDS	3782641	3783468	.	+	0	ID=cds3444;Parent=gene3508;Dbxref=EnsemblGenomes-Gn:azo3448,EnsemblGenomes-Tr:CAL96064,UniProtKB/TrEMBL:A1KB58,NCBI_GP:CAL96064.1;Name=CAL96064.1;Note=Conserved hypothetical secreted protein. Homology to Daro03001225 of Dechloromonas aromatica of 43%25 (gi|46141136|ref|ZP_00153001.2|(NBCI ENTREZ)). Pfam: Protein of unknown function. signal peptide. TMH in signal peptide;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96064.1;transl_table=11
AM406670.1	EMBL	gene	3783478	3784752	.	-	.	ID=gene3509;Name=hemL;gbkey=Gene;gene=hemL;gene_biotype=protein_coding;locus_tag=azo3449
AM406670.1	EMBL	CDS	3783478	3784752	.	-	0	ID=cds3445;Parent=gene3509;Dbxref=EnsemblGenomes-Gn:azo3449,EnsemblGenomes-Tr:CAL96065,GOA:A1KB59,InterPro:IPR004639,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAL96065.1;Name=CAL96065.1;Note=Glutamate-1-semialdehyde 2%2C1-aminomutase (GSA) (GSA-AT). TIGRFAM: hemL: glutamate-1-semialdehyde-21-ami%3B~High confidence in function and specificity;gbkey=CDS;gene=hemL;product=Glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=CAL96065.1;transl_table=11
AM406670.1	EMBL	gene	3784828	3785448	.	-	.	ID=gene3510;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;locus_tag=azo3450
AM406670.1	EMBL	CDS	3784828	3785448	.	-	0	ID=cds3446;Parent=gene3510;Dbxref=EnsemblGenomes-Gn:azo3450,EnsemblGenomes-Tr:CAL96066,GOA:A1KB60,InterPro:IPR003733,InterPro:IPR013785,InterPro:IPR022998,NCBI_GP:CAL96066.1;Name=CAL96066.1;Note=Thiamine-phosphate pyrophosphorylase (TMP pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase). Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate (THZ-P) and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) (By similarity). InterPro: Thiamine monophosphate synthase (TMP) TIGRFAM: thiE: thiamine-phosphate pyrophosphorylase%3B~High confidence in function and specificity;gbkey=CDS;gene=thiE;product=Thiamine-phosphate diphosphorylase;protein_id=CAL96066.1;transl_table=11
AM406670.1	EMBL	gene	3785441	3786283	.	-	.	ID=gene3511;Name=thiD2;gbkey=Gene;gene=thiD2;gene_biotype=protein_coding;locus_tag=azo3451
AM406670.1	EMBL	CDS	3785441	3786283	.	-	0	ID=cds3447;Parent=gene3511;Dbxref=EnsemblGenomes-Gn:azo3451,EnsemblGenomes-Tr:CAL96067,GOA:A1KB61,InterPro:IPR013749,InterPro:IPR029056,UniProtKB/TrEMBL:A1KB61,NCBI_GP:CAL96067.1;Name=CAL96067.1;Note=Phosphomethylpyrimidine kinase (HMP-phosphate kinase) (HMP-P kinase). catalyzes the phosphorylation of hmp-p to hmp-pp (by similarity) TIGRFAM: HMP-P_kinase: phosphomethylpyrimidine kinase%3B~Specificity unclear;gbkey=CDS;gene=thiD2;product=phosphomethylpyrimidine kinase;protein_id=CAL96067.1;transl_table=11
AM406670.1	EMBL	gene	3786395	3786574	.	+	.	ID=gene3512;Name=rubB;gbkey=Gene;gene=rubB;gene_biotype=protein_coding;locus_tag=azo3452
AM406670.1	EMBL	CDS	3786395	3786574	.	+	0	ID=cds3448;Parent=gene3512;Dbxref=EnsemblGenomes-Gn:azo3452,EnsemblGenomes-Tr:CAL96068,GOA:A1KB62,InterPro:IPR004039,InterPro:IPR024922,InterPro:IPR024934,InterPro:IPR024935,UniProtKB/TrEMBL:A1KB62,NCBI_GP:CAL96068.1;Name=CAL96068.1;Note=High confidence in function and specificity;gbkey=CDS;gene=rubB;product=RubB protein;protein_id=CAL96068.1;transl_table=11
AM406670.1	EMBL	gene	3786655	3787041	.	+	.	ID=gene3513;Name=pilG;gbkey=Gene;gene=pilG;gene_biotype=protein_coding;locus_tag=azo3453
AM406670.1	EMBL	CDS	3786655	3787041	.	+	0	ID=cds3449;Parent=gene3513;Dbxref=EnsemblGenomes-Gn:azo3453,EnsemblGenomes-Tr:CAL96069,GOA:A1KB63,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1KB63,NCBI_GP:CAL96069.1;Name=CAL96069.1;Note=Pilus protein%2C Response_reg. Pfam: PF00072%3B Response_reg. SMART: SM00448%3B REC. PilG protein. IS INVOLVED IN PILUS BIOSYNTHESIS AND TWITCHING MOTILITY. MAY ACT AS A SINGLE-DOMAIN RESPONSE REGULATOR WHOSE FUNCTION MAY BE TO RECEIVE A CERTAIN ENVIRONMENTAL SIGNAL(S) AND THEN TRANSDUCE THAT SIGNAL TO THE PILUS ASSEMBLY MACHINERY VIA SPECIFIC PROTEIN-PROTEIN INTERACTIONS.%3B~High confidence in function and specificity;gbkey=CDS;gene=pilG;product=pilus protein;protein_id=CAL96069.1;transl_table=11
AM406670.1	EMBL	gene	3787065	3787430	.	+	.	ID=gene3514;Name=pilH;gbkey=Gene;gene=pilH;gene_biotype=protein_coding;locus_tag=azo3454
AM406670.1	EMBL	CDS	3787065	3787430	.	+	0	ID=cds3450;Parent=gene3514;Dbxref=EnsemblGenomes-Gn:azo3454,EnsemblGenomes-Tr:CAL96070,GOA:A1KB64,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1KB64,NCBI_GP:CAL96070.1;Name=CAL96070.1;Note=Pilus protein%2C Response_reg. Pfam: PF00072%3B Response_reg. SMART: SM00448%3B REC. PilH protein. MAY BE A PART OF A SIGNAL-TRANSDUCTION SYSTEM THAT REGULATES TWITCHING MOTILITY BY CONTROLLING PILUS FUNCTION (EXTENSION AND RETRACTION).%3B~High confidence in function and specificity;gbkey=CDS;gene=pilH;product=pilus protein;protein_id=CAL96070.1;transl_table=11
AM406670.1	EMBL	gene	3787438	3787950	.	+	.	ID=gene3515;Name=pilI;gbkey=Gene;gene=pilI;gene_biotype=protein_coding;locus_tag=azo3455
AM406670.1	EMBL	CDS	3787438	3787950	.	+	0	ID=cds3451;Parent=gene3515;Dbxref=EnsemblGenomes-Gn:azo3455,EnsemblGenomes-Tr:CAL96071,GOA:A1KB65,InterPro:IPR002545,UniProtKB/TrEMBL:A1KB65,NCBI_GP:CAL96071.1;Name=CAL96071.1;Note=Probable pilus biogenesis protein%2C CheW. Protein pilI. MAY BE A PART OF A SIGNAL-TRANSDUCTION SYSTEM THAT REGULATES TWITCHING MOTILITY BY CONTROLLING PILUS FUNCTION (EXTENSION AND RETRACTION). InterPro: CheW-like domain%3B~High confidence in function and specificity;gbkey=CDS;gene=pilI;product=probable pilus biogenesis protein;protein_id=CAL96071.1;transl_table=11
AM406670.1	EMBL	gene	3788002	3790122	.	+	.	ID=gene3516;Name=pilJ;gbkey=Gene;gene=pilJ;gene_biotype=protein_coding;locus_tag=azo3456
AM406670.1	EMBL	CDS	3788002	3790122	.	+	0	ID=cds3452;Parent=gene3516;Dbxref=EnsemblGenomes-Gn:azo3456,EnsemblGenomes-Tr:CAL96072,GOA:A1KB66,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR029095,UniProtKB/TrEMBL:A1KB66,NCBI_GP:CAL96072.1;Name=CAL96072.1;Note=Probable pilus biogenesis protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=pilJ;product=probable pilus biogenesis protein;protein_id=CAL96072.1;transl_table=11
AM406670.1	EMBL	gene	3790157	3796255	.	+	.	ID=gene3517;Name=pilL;gbkey=Gene;gene=pilL;gene_biotype=protein_coding;locus_tag=azo3457
AM406670.1	EMBL	CDS	3790157	3796255	.	+	0	ID=cds3453;Parent=gene3517;Dbxref=EnsemblGenomes-Gn:azo3457,EnsemblGenomes-Tr:CAL96073,GOA:A1KB67,InterPro:IPR001789,InterPro:IPR002545,InterPro:IPR003594,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR011006,UniProtKB/TrEMBL:A1KB67,NCBI_GP:CAL96073.1;Name=CAL96073.1;Note=Putative pilus biogenese protein%2C ATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR002545%3B CheW. IPR004105%3B H-kinase_dim. IPR005467%3B His_kinase. IPR008207%3B Hpt. IPR008208%3B Hpt_N. IPR001789%3B Response_reg. Pfam: PF01584%3B CheW. PF02895%3B H-kinase_dim. PF02518%3B HATPase_c. PF01627%3B Hpt. PF00072%3B Response_reg. SMART: SM00260%3B CheW. SM00387%3B HATPase_c. SM00073%3B HPT. SM00448%3B REC. HTH reporting nucleic acid binding motif%3B~Function unclear;gbkey=CDS;gene=pilL;product=putative pilus biogenese protein;protein_id=CAL96073.1;transl_table=11
AM406670.1	EMBL	gene	3796292	3797803	.	-	.	ID=gene3518;Name=phrB;gbkey=Gene;gene=phrB;gene_biotype=protein_coding;locus_tag=azo3458
AM406670.1	EMBL	CDS	3796292	3797803	.	-	0	ID=cds3454;Parent=gene3518;Dbxref=EnsemblGenomes-Gn:azo3458,EnsemblGenomes-Tr:CAL96074,GOA:A1KB68,InterPro:IPR002081,InterPro:IPR005101,InterPro:IPR006050,InterPro:IPR014729,InterPro:IPR018394,UniProtKB/TrEMBL:A1KB68,NCBI_GP:CAL96074.1;Name=CAL96074.1;Note=DNA photolyase (Photoreactivating enzyme). THIS ENZYME CATALYZES THE LIGHT-DEPENDENT MONOMERIZATION (300-600 NM) OF CYCLOBUTYL PYRIMIDINE DIMERS (IN CIS-SYN CONFIGURATION) WHICH ARE FORMED BETWEEN ADJACENT BASES ON THE SAME DNA STRAND UPON EXPOSURE TO ULTRAVIOLET RADIATION. TIGRFAM: phr2: deoxyribodipyrimidine photolyase.%3B~High confidence in function and specificity;gbkey=CDS;gene=phrB;product=deoxyribodipyrimidine photo-lyase;protein_id=CAL96074.1;transl_table=11
AM406670.1	EMBL	gene	3797871	3798437	.	+	.	ID=gene3519;Name=algH;gbkey=Gene;gene=algH;gene_biotype=protein_coding;locus_tag=azo3459
AM406670.1	EMBL	CDS	3797871	3798437	.	+	0	ID=cds3455;Parent=gene3519;Dbxref=EnsemblGenomes-Gn:azo3459,EnsemblGenomes-Tr:CAL96075,InterPro:IPR003774,NCBI_GP:CAL96075.1;Name=CAL96075.1;Note=Transcriptional regulator%2C%3B~Specificity unclear;gbkey=CDS;gene=algH;product=transcriptional regulator;protein_id=CAL96075.1;transl_table=11
AM406670.1	EMBL	gene	3798430	3798900	.	+	.	ID=gene3520;Name=yqgF;gbkey=Gene;gene=yqgF;gene_biotype=protein_coding;locus_tag=azo3460
AM406670.1	EMBL	CDS	3798430	3798900	.	+	0	ID=cds3456;Parent=gene3520;Dbxref=EnsemblGenomes-Gn:azo3460,EnsemblGenomes-Tr:CAL96076,GOA:A1KB70,InterPro:IPR005227,InterPro:IPR006641,InterPro:IPR012337,NCBI_GP:CAL96076.1;Name=CAL96076.1;Note=Putative Holliday junction resolvase (EC 3.1.-.-). Could be a nuclease that resolves Holliday junction intermediates in genetic recombination.%3B~High confidence in function and specificity;gbkey=CDS;gene=yqgF;product=putative Hollyday junction resolvase;protein_id=CAL96076.1;transl_table=11
AM406670.1	EMBL	gene	3798887	3799387	.	+	.	ID=gene3521;Name=pyrR;gbkey=Gene;gene=pyrR;gene_biotype=protein_coding;locus_tag=azo3461
AM406670.1	EMBL	CDS	3798887	3799387	.	+	0	ID=cds3457;Parent=gene3521;Dbxref=EnsemblGenomes-Gn:azo3461,EnsemblGenomes-Tr:CAL96077,GOA:A1KB71,InterPro:IPR000836,InterPro:IPR029057,UniProtKB/TrEMBL:A1KB71,NCBI_GP:CAL96077.1;Name=CAL96077.1;Note=Phosphoribosyl transferase or bifunctional regulator/uracil phosphoribosyltransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=pyrR;product=phosphoribosyl transferase;protein_id=CAL96077.1;transl_table=11
AM406670.1	EMBL	gene	3799380	3800339	.	+	.	ID=gene3522;Name=pyrB;gbkey=Gene;gene=pyrB;gene_biotype=protein_coding;locus_tag=azo3462
AM406670.1	EMBL	CDS	3799380	3800339	.	+	0	ID=cds3458;Parent=gene3522;Dbxref=EnsemblGenomes-Gn:azo3462,EnsemblGenomes-Tr:CAL96078,GOA:A1KB72,InterPro:IPR002082,InterPro:IPR006130,InterPro:IPR006131,InterPro:IPR006132,NCBI_GP:CAL96078.1;Name=CAL96078.1;Note=Aspartate carbamoyltransferase (Aspartate transcarbamylase) (Carbamylaspartotranskinase) (ATCase)%3B~High confidence in function and specificity;gbkey=CDS;gene=pyrB;product=aspartate carbamoyltransferase;protein_id=CAL96078.1;transl_table=11
AM406670.1	EMBL	gene	3800410	3801693	.	+	.	ID=gene3523;Name=pyrX;gbkey=Gene;gene=pyrX;gene_biotype=protein_coding;locus_tag=azo3463
AM406670.1	EMBL	CDS	3800410	3801693	.	+	0	ID=cds3459;Parent=gene3523;Dbxref=EnsemblGenomes-Gn:azo3463,EnsemblGenomes-Tr:CAL96079,GOA:A1KB73,InterPro:IPR004722,InterPro:IPR011059,UniProtKB/TrEMBL:A1KB73,NCBI_GP:CAL96079.1;Name=CAL96079.1;Note=Probable dihydroorotase. Homology to pyrC' of P. putida of 44%25 (sprot|PYRX_PSEPU) This protein tends to appear in a large%2C multifunctional complex with aspartate transcarbamoylase. It is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase. InterPro: Dihydroorotase multifunctional complex type (IPR004722)%3B Dihydroorotase (IPR002195) Tigrfam: pyrC_multi: dihydroorotase multifunctional complex type no signal peptide no TMHS%3B~High confidence in function and specificity;gbkey=CDS;gene=pyrX;product=probable dihydroorotase;protein_id=CAL96079.1;transl_table=11
AM406670.1	EMBL	gene	3801700	3801996	.	-	.	ID=gene3524;Name=yggU;gbkey=Gene;gene=yggU;gene_biotype=protein_coding;locus_tag=azo3464
AM406670.1	EMBL	CDS	3801700	3801996	.	-	0	ID=cds3460;Parent=gene3524;Dbxref=EnsemblGenomes-Gn:azo3464,EnsemblGenomes-Tr:CAL96080,InterPro:IPR003746,InterPro:IPR005228,NCBI_GP:CAL96080.1;Name=CAL96080.1;Note=Conserved hypothetical protein. Homology to vc0458 of V. clholerae of 48%25 (sprot:Y458_VIBCH). InterPro: DUF167 (IPR003748). Pfam: Uncharacterized ACR%2C YGGU family%2C COF1872. no signal peptide. no TMHs;gbkey=CDS;gene=yggU;product=conserved hypothetical protein;protein_id=CAL96080.1;transl_table=11
AM406670.1	EMBL	gene	3802001	3802582	.	-	.	ID=gene3525;Name=azo3465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3465
AM406670.1	EMBL	CDS	3802001	3802582	.	-	0	ID=cds3461;Parent=gene3525;Dbxref=EnsemblGenomes-Gn:azo3465,EnsemblGenomes-Tr:CAL96081,GOA:A1KB75,InterPro:IPR003425,UniProtKB/TrEMBL:A1KB75,NCBI_GP:CAL96081.1;Name=CAL96081.1;Note=Conserved hypothetical YGGT-family protein. Homology to ne0394 of N. europae of 37%25 (trembl|Q82X94). This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown. InterPro: YGGT family (IPR003425). Pfam: YGGT family. no signal peptide. 5 TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical YGGT-family protein;protein_id=CAL96081.1;transl_table=11
AM406670.1	EMBL	gene	3802601	3803425	.	-	.	ID=gene3526;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;locus_tag=azo3466
AM406670.1	EMBL	CDS	3802601	3803425	.	-	0	ID=cds3462;Parent=gene3526;Dbxref=EnsemblGenomes-Gn:azo3466,EnsemblGenomes-Tr:CAL96082,GOA:A1KB76,InterPro:IPR000304,InterPro:IPR008927,InterPro:IPR016040,InterPro:IPR028939,InterPro:IPR029036,UniProtKB/TrEMBL:A1KB76,NCBI_GP:CAL96082.1;Name=CAL96082.1;Note=Delta 1-pyrroline-5-carboxylate reductase (P5CR) is the enzyme that catalyzes the terminal step in the biosynthesis of proline from glutamate%2C the NAD(P) dependent oxidation of 1-pyrroline-5-carboxylate into proline. Similar to trembl|Q82X95 (39%25) and to sprot|PROC_PSEAE (39%25). Pfam: Delta 1-pyrroline-5-carboxylate reductase TIGRFAM: proC%2C pyrroline-5-carboxylate reductase%3B~Specificity unclear;gbkey=CDS;gene=proC;product=probable 1-pyrroline-5-carboxylate reductase;protein_id=CAL96082.1;transl_table=11
AM406670.1	EMBL	gene	3803499	3804212	.	-	.	ID=gene3527;Name=azo3467;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3467
AM406670.1	EMBL	CDS	3803499	3804212	.	-	0	ID=cds3463;Parent=gene3527;Dbxref=EnsemblGenomes-Gn:azo3467,EnsemblGenomes-Tr:CAL96083,InterPro:IPR001608,InterPro:IPR011078,InterPro:IPR029066,UniProtKB/TrEMBL:A1KB77,NCBI_GP:CAL96083.1;Name=CAL96083.1;Note=Concerved hypothetical protein. Homology to PA0394 of P. aeruginosa of 65%25 (sprot|Y394_PSEAE). InterPro: Uncharacterized pyridoxal-5-phosphate dependent enzyme family UPF0001 (IPR001608). Pfam: Uncharacterized protein family UPF0001. Tigrfam: TIGR00044: conserved hypothetical protein. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96083.1;transl_table=11
AM406670.1	EMBL	gene	3804339	3805379	.	+	.	ID=gene3528;Name=pilT;gbkey=Gene;gene=pilT;gene_biotype=protein_coding;locus_tag=azo3468
AM406670.1	EMBL	CDS	3804339	3805379	.	+	0	ID=cds3464;Parent=gene3528;Dbxref=EnsemblGenomes-Gn:azo3468,EnsemblGenomes-Tr:CAL96084,GOA:A1KB78,InterPro:IPR001482,InterPro:IPR003593,InterPro:IPR006321,InterPro:IPR027417,UniProtKB/TrEMBL:A1KB78,NCBI_GP:CAL96084.1;Name=CAL96084.1;Note=Tfp retraction protein PilT%2C involved in the twitching motility mechanism together with PilU%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=pilT;product=twitching motility protein;protein_id=CAL96084.1;transl_table=11
AM406670.1	EMBL	gene	3805466	3806599	.	+	.	ID=gene3529;Name=pilU2;gbkey=Gene;gene=pilU2;gene_biotype=protein_coding;locus_tag=azo3469
AM406670.1	EMBL	CDS	3805466	3806599	.	+	0	ID=cds3465;Parent=gene3529;Dbxref=EnsemblGenomes-Gn:azo3469,EnsemblGenomes-Tr:CAL96085,GOA:A1KB79,InterPro:IPR001482,InterPro:IPR006321,InterPro:IPR027417,UniProtKB/TrEMBL:A1KB79,NCBI_GP:CAL96085.1;Name=CAL96085.1;Note=Tfp retraction protein PilU is involved in the Twitching Motility mechanism%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=pilU2;product=twitching motility protein;protein_id=CAL96085.1;transl_table=11
AM406670.1	EMBL	gene	3806788	3809505	.	+	.	ID=gene3530;Name=vgrG;gbkey=Gene;gene=vgrG;gene_biotype=protein_coding;locus_tag=azo3470
AM406670.1	EMBL	CDS	3806788	3809505	.	+	0	ID=cds3466;Parent=gene3530;Dbxref=EnsemblGenomes-Gn:azo3470,EnsemblGenomes-Tr:CAL96086,InterPro:IPR006531,InterPro:IPR006533,InterPro:IPR017847,InterPro:IPR018769,InterPro:IPR028244,UniProtKB/TrEMBL:A1KB80,NCBI_GP:CAL96086.1;Name=CAL96086.1;Note=Probable vgr-related protein %2C44%25 identity(54%25 similarity) to TrEMBL%3B Q7P238.TrEMBL%3BQ8XRU3(44%25 identity). Signal Peptide Present. Has SMART%3BSM00438%2CRepressor of transcription%3BIPR000967%2C Znf_NFX1%3BThis domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C%2Cwhere X can be any amino acid%2C and numbers in brackets indicate the number of residues. The two position can be either his or cys. This domain is found in the human transcriptional repressor NK-X1%2C a repressor of HLA-DRA transcription%3B the Drosophila shuttle craft protein%2C which plays an essential role during the late stages of embryonic neurogenesis%3B and a yeast hypothetical protein YNL023C. Has PF04524%2C Protein of unknown function%2CDUF586%3B IPR006533%2CRhs_Vgr%3BThis family contains a conserved region in several bacterial proteins of unknown function.%3B~High confidence in function and specificity;gbkey=CDS;gene=vgrG;product=probable vgr-related protein;protein_id=CAL96086.1;transl_table=11
AM406670.1	EMBL	gene	3809502	3811634	.	+	.	ID=gene3531;Name=azo3471;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3471
AM406670.1	EMBL	CDS	3809502	3811634	.	+	0	ID=cds3467;Parent=gene3531;Dbxref=EnsemblGenomes-Gn:azo3471,EnsemblGenomes-Tr:CAL96087,InterPro:IPR021692,InterPro:IPR029058,UniProtKB/TrEMBL:A1KB81,NCBI_GP:CAL96087.1;Name=CAL96087.1;Note=Conserved hypothetical protein. Homology to RS02436 of R.solanacearum of 41%25 (trembl:Q8XUG9). No domains predicted. No signal peptide present. No TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96087.1;transl_table=11
AM406670.1	EMBL	gene	3811703	3813064	.	+	.	ID=gene3532;Name=azo3472;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3472
AM406670.1	EMBL	CDS	3811703	3813064	.	+	0	ID=cds3468;Parent=gene3532;Dbxref=EnsemblGenomes-Gn:azo3472,EnsemblGenomes-Tr:CAL96088,UniProtKB/TrEMBL:A1KB82,NCBI_GP:CAL96088.1;Name=CAL96088.1;Note=Conserved hypothetical secreted protein. Homology to RS02435 of R. solanarcearum of 43%25 (trembl|Q8XUH0(SRS)). No domains predicted. Signal Peptide present. No TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96088.1;transl_table=11
AM406670.1	EMBL	gene	3813157	3814398	.	+	.	ID=gene3533;Name=azo3473;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3473
AM406670.1	EMBL	CDS	3813157	3814398	.	+	0	ID=cds3469;Parent=gene3533;Dbxref=EnsemblGenomes-Gn:azo3473,EnsemblGenomes-Tr:CAL96089,UniProtKB/TrEMBL:A1KB83,NCBI_GP:CAL96089.1;Name=CAL96089.1;Note=Conserved hypothetical protein. Homology to RS02435 of R. solanacearum of 47%25 (trembl:Q8XUH0). No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96089.1;transl_table=11
AM406670.1	EMBL	gene	3814395	3815732	.	+	.	ID=gene3534;Name=azo3474;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3474
AM406670.1	EMBL	CDS	3814395	3815732	.	+	0	ID=cds3470;Parent=gene3534;Dbxref=EnsemblGenomes-Gn:azo3474,EnsemblGenomes-Tr:CAL96090,UniProtKB/TrEMBL:A1KB84,NCBI_GP:CAL96090.1;Name=CAL96090.1;Note=Conserved hypothetical secreted protein. Homology to RS02435 of R. solanarcearum of 44%25 (trembl|Q8XUH0(SRS)). No domains predicted. Signal Peptide present. No TMH reported present%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96090.1;transl_table=11
AM406670.1	EMBL	gene	3815864	3817339	.	-	.	ID=gene3535;Name=azo3475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3475
AM406670.1	EMBL	CDS	3815864	3817339	.	-	0	ID=cds3471;Parent=gene3535;Dbxref=EnsemblGenomes-Gn:azo3475,EnsemblGenomes-Tr:CAL96091,GOA:A1KB85,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR025991,UniProtKB/TrEMBL:A1KB85,NCBI_GP:CAL96091.1;Name=CAL96091.1;Note=Putative mcp-domain signal transduction protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative MCP-domain signal transduction protein;protein_id=CAL96091.1;transl_table=11
AM406670.1	EMBL	gene	3817314	3817835	.	-	.	ID=gene3536;Name=azo3476;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3476
AM406670.1	EMBL	CDS	3817314	3817835	.	-	0	ID=cds3472;Parent=gene3536;Dbxref=EnsemblGenomes-Gn:azo3476,EnsemblGenomes-Tr:CAL96092,GOA:A1KB86,InterPro:IPR000014,InterPro:IPR001610,UniProtKB/TrEMBL:A1KB86,NCBI_GP:CAL96092.1;Name=CAL96092.1;Note=Putative signal-transduction sensor protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative signal-transduction sensor protein;protein_id=CAL96092.1;transl_table=11
AM406670.1	EMBL	gene	3817884	3819047	.	-	.	ID=gene3537;Name=azo3477;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3477
AM406670.1	EMBL	CDS	3817884	3819047	.	-	0	ID=cds3473;Parent=gene3537;Dbxref=EnsemblGenomes-Gn:azo3477,EnsemblGenomes-Tr:CAL96093,GOA:A1KB87,InterPro:IPR000241,InterPro:IPR002052,InterPro:IPR004114,InterPro:IPR029063,UniProtKB/TrEMBL:A1KB87,NCBI_GP:CAL96093.1;Name=CAL96093.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96093.1;transl_table=11
AM406670.1	EMBL	gene	3819301	3819513	.	-	.	ID=gene3538;Name=azo3478;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3478
AM406670.1	EMBL	CDS	3819301	3819513	.	-	0	ID=cds3474;Parent=gene3538;Dbxref=EnsemblGenomes-Gn:azo3478,EnsemblGenomes-Tr:CAL96094,UniProtKB/TrEMBL:A1KB88,NCBI_GP:CAL96094.1;Name=CAL96094.1;Note=Conserved hypothetical secreted protein. Homology to rsc2369 of R. solanacearum of 52%25 (trembl|Q8XWV1). no damians predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96094.1;transl_table=11
AM406670.1	EMBL	gene	3819510	3820550	.	-	.	ID=gene3539;Name=fdhC;gbkey=Gene;gene=fdhC;gene_biotype=protein_coding;locus_tag=azo3479
AM406670.1	EMBL	CDS	3819510	3820550	.	-	0	ID=cds3475;Parent=gene3539;Dbxref=EnsemblGenomes-Gn:azo3479,EnsemblGenomes-Tr:CAL96095,GOA:A1KB89,InterPro:IPR006471,InterPro:IPR016174,UniProtKB/TrEMBL:A1KB89,NCBI_GP:CAL96095.1;Name=CAL96095.1;Note=Putative formate dehydrogenase gamma subunit. Homology to fdhC of W. succinogenes of 21%25 (TREMBL:P28180). Formate dehydrogenase is a membrane-bound complex%2C formed of at least three different subunits%3B probable heterotetramer of two FDHA%2C one FDHB and one FDHC. FdhC probably anchors the enzyme in the membrane and IS PROBABLY THE CYTOCHROME B556(FDO) COMPONENT. no good domains signal peptide 5 TMHs%3B~Family membership;gbkey=CDS;gene=fdhC;product=putative formate dehydrogenase gamma subunit;protein_id=CAL96095.1;transl_table=11
AM406670.1	EMBL	gene	3820561	3820794	.	-	.	ID=gene3540;Name=azo3480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3480
AM406670.1	EMBL	CDS	3820561	3820794	.	-	0	ID=cds3476;Parent=gene3540;Dbxref=EnsemblGenomes-Gn:azo3480,EnsemblGenomes-Tr:CAL96096,UniProtKB/TrEMBL:A1KB90,NCBI_GP:CAL96096.1;Name=CAL96096.1;Note=Conserved hypothetical secreted protein. Homology to rsc2371 of R. solanacearum of 36%25 (trembl|Q8XWU9). no doamins predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96096.1;transl_table=11
AM406670.1	EMBL	gene	3820791	3821399	.	-	.	ID=gene3541;Name=fdhB;gbkey=Gene;gene=fdhB;gene_biotype=protein_coding;locus_tag=azo3481
AM406670.1	EMBL	CDS	3820791	3821399	.	-	0	ID=cds3477;Parent=gene3541;Dbxref=EnsemblGenomes-Gn:azo3481,EnsemblGenomes-Tr:CAL96097,GOA:A1KB91,InterPro:IPR000813,InterPro:IPR001450,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1KB91,NCBI_GP:CAL96097.1;Name=CAL96097.1;Note=probable formate dehydrogenase iron-sulfur subunit. Homology to fdhB of W. succinogenes of 63%25 (SWISSPROT:FDHB_WOLSU) THIS CHAIN IS AN ELECTRON TRANSFER UNIT CONTAINING 18 CYSTEINE RESIDUES 16 OF WHICH OCCUR IN THREE CLUSTERS. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450)%3B 7Fe ferredoxin (IPR000813)%3B 3Fe-4S ferredoxin (IPR001080) Pfam: 4Fe-4S binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fdhB;product=probable formate dehydrogenase iron-sulfur subunit;protein_id=CAL96097.1;transl_table=11
AM406670.1	EMBL	gene	3821419	3824322	.	-	.	ID=gene3542;Name=fdhA2;gbkey=Gene;gene=fdhA2;gene_biotype=protein_coding;locus_tag=azo3482
AM406670.1	EMBL	CDS	3821419	3824322	.	-	0	ID=cds3478;Parent=gene3542;Dbxref=EnsemblGenomes-Gn:azo3482,EnsemblGenomes-Tr:CAL96098,GOA:A1KB92,InterPro:IPR006311,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,InterPro:IPR019546,InterPro:IPR027467,UniProtKB/TrEMBL:A1KB92,NCBI_GP:CAL96098.1;Name=CAL96098.1;Note=Probable formate dehydrogenase alpha subunit. Homology to fdha of W. succinogenes of 44%25 (pir|S18213) The formate dehydrogenase catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilized mainly in the nitrate respiration by nitrate reductase InterPro: Prokaryotic molybdopterin oxidoreductases (IPR006655) Pfam: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain singal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=fdhA2;product=probable formate dehydrogenase alpha subunit;protein_id=CAL96098.1;transl_table=11
AM406670.1	EMBL	gene	3824336	3824572	.	-	.	ID=gene3543;Name=azo3483;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3483
AM406670.1	EMBL	CDS	3824336	3824572	.	-	0	ID=cds3479;Parent=gene3543;Dbxref=EnsemblGenomes-Gn:azo3483,EnsemblGenomes-Tr:CAL96099,InterPro:IPR006311,UniProtKB/TrEMBL:A1KB93,NCBI_GP:CAL96099.1;Name=CAL96099.1;Note=Conserved hypothetical secreted protein. Homology to rsc2374 of R. solanacearum of 39%25 (trembl|Q8XWU6). no domains predicted. signal peptide. TMH in signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96099.1;transl_table=11
AM406670.1	EMBL	gene	3824610	3825233	.	-	.	ID=gene3544;Name=torD;gbkey=Gene;gene=torD;gene_biotype=protein_coding;locus_tag=azo3484
AM406670.1	EMBL	CDS	3824610	3825233	.	-	0	ID=cds3480;Parent=gene3544;Dbxref=EnsemblGenomes-Gn:azo3484,EnsemblGenomes-Tr:CAL96100,InterPro:IPR020945,UniProtKB/TrEMBL:A1KB94,NCBI_GP:CAL96100.1;Name=CAL96100.1;Note=Putative Chaperone protein TorD. Homology to torD of E. coli of 23%25 (sprot|TORD_ECOLI). This family consists of several bacterial TorD proteins. Many prokaryotic molybdoenzymes%2C for example the TMAO reductase (TorA) of Escherichia coli%2C require the insertion of a bis(molybdopterin guanine dinucleotide) molybdenum (bis(MGD)Mo) cofactor in its catalytic site to be active and translocated to the periplasm. The TorD chaperone increases apoTorA activation up to four-fold%2C allowing maturation of most of the apoprotein. Therefore TorD is involved in the first step of TorA maturation to make it competent to receive the cofactor. Pfam: Cytoplasmic chaperon no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=torD;product=putative chaperone protein TorD;protein_id=CAL96100.1;transl_table=11
AM406670.1	EMBL	gene	3825247	3827352	.	-	.	ID=gene3545;Name=azo3485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3485
AM406670.1	EMBL	CDS	3825247	3827352	.	-	0	ID=cds3481;Parent=gene3545;Dbxref=EnsemblGenomes-Gn:azo3485,EnsemblGenomes-Tr:CAL96101,GOA:A1KB95,InterPro:IPR001450,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1KB95,NCBI_GP:CAL96101.1;Name=CAL96101.1;Note=Conserved hypothetical iron-sulfur binding protein. Homology to pb1470 of B. pertussis of 48%25 (trembl|Q7VY84). Transfer of electrons in a wide variety of metabolic reactions. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450). Pfam: 4Fe-4S binding domain. no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical iron-sulfur cluster-binding protein;protein_id=CAL96101.1;transl_table=11
AM406670.1	EMBL	gene	3827941	3828564	.	-	.	ID=gene3546;Name=azo3486;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3486
AM406670.1	EMBL	CDS	3827941	3828564	.	-	0	ID=cds3482;Parent=gene3546;Dbxref=EnsemblGenomes-Gn:azo3486,EnsemblGenomes-Tr:CAL96102,InterPro:IPR021735,UniProtKB/TrEMBL:A1KB96,NCBI_GP:CAL96102.1;Name=CAL96102.1;Note=Conserved hypothetical protein. Homology to RS01168 of R.solanacearum of 40%25 (trembl:Q8XWU3). No domains predicted. No signal peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96102.1;transl_table=11
AM406670.1	EMBL	gene	3828561	3829046	.	-	.	ID=gene3547;Name=azo3487;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3487
AM406670.1	EMBL	CDS	3828561	3829046	.	-	0	ID=cds3483;Parent=gene3547;Dbxref=EnsemblGenomes-Gn:azo3487,EnsemblGenomes-Tr:CAL96103,InterPro:IPR021736,UniProtKB/TrEMBL:A1KB97,NCBI_GP:CAL96103.1;Name=CAL96103.1;Note=Conserved hypothetical protein. Homology to BPP1929 of B.parapertussis of 34%25 (trembl:34%25). No signal peptide or TMH reported present. No domains predicted.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96103.1;transl_table=11
AM406670.1	EMBL	gene	3829147	3830031	.	+	.	ID=gene3548;Name=fdhD;gbkey=Gene;gene=fdhD;gene_biotype=protein_coding;locus_tag=azo3488
AM406670.1	EMBL	CDS	3829147	3830031	.	+	0	ID=cds3484;Parent=gene3548;Dbxref=EnsemblGenomes-Gn:azo3488,EnsemblGenomes-Tr:CAL96104,GOA:A1KB98,InterPro:IPR003786,InterPro:IPR016193,UniProtKB/TrEMBL:A1KB98,NCBI_GP:CAL96104.1;Name=CAL96104.1;Note=Putative formate dehydrogenase accessory protein. Homology to fdhD of W. succinogenes of 20%25 (sprot|FDHD_WOLSU). Necessary for formate dehydrogenase activity (By similarity). InterPro: Formate dehydrogenase subunit FdhD (IPR003786). Pfam: FdhD/NarQ family no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=fdhD;product=putative formate dehydrogenase accessory protein;protein_id=CAL96104.1;transl_table=11
AM406670.1	EMBL	gene	3830028	3830669	.	+	.	ID=gene3549;Name=mobA;gbkey=Gene;gene=mobA;gene_biotype=protein_coding;locus_tag=azo3489
AM406670.1	EMBL	CDS	3830028	3830669	.	+	0	ID=cds3485;Parent=gene3549;Dbxref=EnsemblGenomes-Gn:azo3489,EnsemblGenomes-Tr:CAL96105,GOA:A1KB99,InterPro:IPR013482,InterPro:IPR025877,InterPro:IPR029044,UniProtKB/TrEMBL:A1KB99,NCBI_GP:CAL96105.1;Name=CAL96105.1;Note=Probable molybdopterin-guanine dinucleotide biosynthesis protein A%2C 46%25 Identity to SwissProt%3BQ8Y0K5. TrEMBL%3BQ62LV3(44%25 Identity)Q63S71 Has PF01128%2CUncharacterized protein family UPF0007%3BIPR001228 ISPD_synthase%3B The bacterial ispD protein catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis%3B the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate.;gbkey=CDS;gene=mobA;product=probable molybdopterin-guanine dinucleotide biosynthesis protein A;protein_id=CAL96105.1;transl_table=11
AM406670.1	EMBL	gene	3830659	3831579	.	+	.	ID=gene3550;Name=azo3490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3490
AM406670.1	EMBL	CDS	3830659	3831579	.	+	0	ID=cds3486;Parent=gene3550;Dbxref=EnsemblGenomes-Gn:azo3490,EnsemblGenomes-Tr:CAL96106,GOA:A1KBA0,InterPro:IPR010093,InterPro:IPR024370,UniProtKB/TrEMBL:A1KBA0,NCBI_GP:CAL96106.1;Name=CAL96106.1;Note=Conserved hypothetical protein. Homology to ebA2947 of Azoarcus sp. EbN1 of 58%25 (gnl|keqq|eba:ebA2947(KEGG)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96106.1;transl_table=11
AM406670.1	EMBL	gene	3831592	3832095	.	-	.	ID=gene3551;Name=mobB2;gbkey=Gene;gene=mobB2;gene_biotype=protein_coding;locus_tag=azo3491
AM406670.1	EMBL	CDS	3831592	3832095	.	-	0	ID=cds3487;Parent=gene3551;Dbxref=EnsemblGenomes-Gn:azo3491,EnsemblGenomes-Tr:CAL96107,GOA:A1KBA1,InterPro:IPR004435,InterPro:IPR027417,InterPro:IPR029007,UniProtKB/TrEMBL:A1KBA1,NCBI_GP:CAL96107.1;Name=CAL96107.1;Note=Molybdopterin-guanine dinucleotide biosynthesis protein B. MAY BIND THE GUANINE NUCLEOTIDE REQUIRED FOR THE SYNTHESIS OF MOLYBDOPTERIN GUANINE DINUCLEOTIDE. InterPro: ATP/GTP-binding site motif A (P-loop) TIGRFAM: mobB: molybdopterin-guanine dinucleotide%3B~High confidence in function and specificity;gbkey=CDS;gene=mobB2;product=molybdopterin-guanine dinucleotide biosynthesis protein B;protein_id=CAL96107.1;transl_table=11
AM406670.1	EMBL	gene	3832128	3834263	.	-	.	ID=gene3552;Name=azo3492;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3492
AM406670.1	EMBL	CDS	3832128	3834263	.	-	0	ID=cds3488;Parent=gene3552;Dbxref=EnsemblGenomes-Gn:azo3492,EnsemblGenomes-Tr:CAL96108,GOA:A1KBA2,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR029151,UniProtKB/TrEMBL:A1KBA2,NCBI_GP:CAL96108.1;Name=CAL96108.1;Note=Putative sensor histidine kinase%2C His_kinA_N. IPR009082%3B His_kin_homodim. IPR003660%3B HAMP. IPR003594%3B ATPbind_ATPase. Pfam: PF02518%3B HATPase_c. PF00512%3B HisKA. PF00672%3B HAMP. SMART: SM00387%3B HATPase_c. SM00388%3B HisKA. SM00304%3B HAMP. TMHMM reporting 2 transmembrane helices.%3B~Specificity unclear;gbkey=CDS;product=putative sensor histidine kinase;protein_id=CAL96108.1;transl_table=11
AM406670.1	EMBL	gene	3834272	3835684	.	-	.	ID=gene3553;Name=sasR;gbkey=Gene;gene=sasR;gene_biotype=protein_coding;locus_tag=azo3493
AM406670.1	EMBL	CDS	3834272	3835684	.	-	0	ID=cds3489;Parent=gene3553;Dbxref=EnsemblGenomes-Gn:azo3493,EnsemblGenomes-Tr:CAL96109,GOA:A1KBA3,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1KBA3,NCBI_GP:CAL96109.1;Name=CAL96109.1;Note=Probable sigma-54 dependent response regulator%2CAAA_ATPase. IPR008931%3B FIS-like. IPR002197%3B HTH_Fis. IPR010114%3B NtrC. IPR001789%3B Response_reg. IPR008298%3B Res_reg_NtrC. IPR002078%3B Sig54_interact. Pfam: PF02954%3B HTH_8. PF00072%3B Response_reg. PF00158%3B Sigma54_activat. SMART: SM00382%3B AAA. SM00448%3B REC. HTH reporting reporting nucleic acid binding motif.%3B~Family membership;gbkey=CDS;gene=sasR;product=probable sigma-54 dependent response regulator;protein_id=CAL96109.1;transl_table=11
AM406670.1	EMBL	gene	3835728	3836138	.	-	.	ID=gene3554;Name=azo3494;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3494
AM406670.1	EMBL	CDS	3835728	3836138	.	-	0	ID=cds3490;Parent=gene3554;Dbxref=EnsemblGenomes-Gn:azo3494,EnsemblGenomes-Tr:CAL96110,InterPro:IPR005265,UniProtKB/TrEMBL:A1KBA4,NCBI_GP:CAL96110.1;Name=CAL96110.1;Note=Conserved hypothetical membrane protein. Homology to CV0155 of Chromobacterium violaceum of 69%25 (trembl|Q7P1Q8). Has PF03653%2C Uncharacterised protein family (UPF0093)%3BIPR005265%2C Cons_hypoth701:It appears the conserved hypothetical integral membrane proteins of this family are found only in gram negative bacteria and their function is unknown. No signal peptide. 4 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96110.1;transl_table=11
AM406670.1	EMBL	gene	3836156	3837034	.	-	.	ID=gene3555;Name=azo3495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3495
AM406670.1	EMBL	CDS	3836156	3837034	.	-	0	ID=cds3491;Parent=gene3555;Dbxref=EnsemblGenomes-Gn:azo3495,EnsemblGenomes-Tr:CAL96111,GOA:A1KBA5,InterPro:IPR016040,UniProtKB/TrEMBL:A1KBA5,NCBI_GP:CAL96111.1;Name=CAL96111.1;Note=55%25%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96111.1;transl_table=11
AM406670.1	EMBL	gene	3837056	3838075	.	+	.	ID=gene3556;Name=ascD;gbkey=Gene;gene=ascD;gene_biotype=protein_coding;locus_tag=azo3496
AM406670.1	EMBL	CDS	3837056	3838075	.	+	0	ID=cds3492;Parent=gene3556;Dbxref=EnsemblGenomes-Gn:azo3496,EnsemblGenomes-Tr:CAL96112,GOA:A1KBA6,InterPro:IPR001041,InterPro:IPR001221,InterPro:IPR001433,InterPro:IPR001709,InterPro:IPR006058,InterPro:IPR008333,InterPro:IPR012675,InterPro:IPR017927,InterPro:IPR017938,UniProtKB/TrEMBL:A1KBA6,NCBI_GP:CAL96112.1;Name=CAL96112.1;Note=Probable CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase. Homology to ascD of Y. pestis of 41%25 (sprot|ASCD_YERPE). PARTICIPATES IN THE CONVERSION OF CDP-6-DEOXY-D-GLYCERO- L-THREO-4-HEXULOSE TO 36-DIDEOXY-D-GLYCERO-D-GLYCERO-4-HEXULOSE TOGETHER WITH CDP-6-DEOXY-D-GLYCERO-L-THREO-4-HEXULOSE-3-DEHYDRASE (E1) IN TWO CONSECUTIVE STEPS. THE DETAILED MECHANISM OF E3 IS NOT YET RESOLVED. InterPro: Oxidoreductase FAD and NAD(P)-binding domain (IPR001433)%3B NadH:cytochrome b5 reductase (CBR) (IPR000134)%3B 2Fe-2S Ferredoxin (IPR006057)%3B Phenol hydroylase reductase family (IPR001221) Pfam: 2Fe-2S iron-sulfur cluster binding domain%3B Oxidoreductase FAD-binding doamin%3B Oxidoreductase NAD-binding domain no signal peptide no TMHs TIGR00258: conserved hypothetical prote%3B~High confidence in function and specificity;gbkey=CDS;gene=ascD;product=probable CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehy drase reductase;protein_id=CAL96112.1;transl_table=11
AM406670.1	EMBL	gene	3838095	3839231	.	+	.	ID=gene3557;Name=azo3497;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3497
AM406670.1	EMBL	CDS	3838095	3839231	.	+	0	ID=cds3493;Parent=gene3557;Dbxref=EnsemblGenomes-Gn:azo3497,EnsemblGenomes-Tr:CAL96113,InterPro:IPR013976,UniProtKB/TrEMBL:A1KBA7,NCBI_GP:CAL96113.1;Name=CAL96113.1;Note=conserved hypothetical regulator protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical regulator protein;protein_id=CAL96113.1;transl_table=11
AM406670.1	EMBL	gene	3839343	3841346	.	+	.	ID=gene3558;Name=azo3498;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3498
AM406670.1	EMBL	CDS	3839343	3841346	.	+	0	ID=cds3494;Parent=gene3558;Dbxref=EnsemblGenomes-Gn:azo3498,EnsemblGenomes-Tr:CAL96114,GOA:A1KBA8,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,UniProtKB/TrEMBL:A1KBA8,NCBI_GP:CAL96114.1;Name=CAL96114.1;Note=Putative sensor protein%2C no significant homology. Best Hit SWISSPROT: sprot|ZRAS_SALTY (10%25 Salmonella typhimurium%2C ZraS) InterPro: IPR003594%3B ATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR005467%3B His_kinase. Pfam: PF02518%3B HATPase_c. PF00512%3B HisKA. SMART: SM00387%3B HATPase_c. SM00388%3B HisKA. Signal P reporting signal peptide. Sensor protein zraS (EC 2.7.3.-). Member of the two-component regulatory system zraS/zraR. May function as a membrane-associated protein kinase that phosphorylates zraR in response to high concentrations of zinc or lead in the medium (By similarity).;gbkey=CDS;product=putative sensor protein;protein_id=CAL96114.1;transl_table=11
AM406670.1	EMBL	gene	3841404	3843584	.	+	.	ID=gene3559;Name=azo3499;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3499
AM406670.1	EMBL	CDS	3841404	3843584	.	+	0	ID=cds3495;Parent=gene3559;Dbxref=EnsemblGenomes-Gn:azo3499,EnsemblGenomes-Tr:CAL96115,GOA:A1KBA9,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR000700,InterPro:IPR001633,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR029787,UniProtKB/TrEMBL:A1KBA9,NCBI_GP:CAL96115.1;Name=CAL96115.1;Note=Conserved hypothetical signaling protein. Homology to Daro03001340 of Dechloromonas aromatica of 45%25 (gi|53730727|ref|ZP_00348932.1|(NBCI ENTREZ)). InterPro: IPR000160 GGDEF. IPR000014 PAS. IPR000700 PAS-assoc_C. IPR001789 Response_reg. IPR001633 EAL. Pfam: PF00990 GGDEF domain. PF00989 PAS domain. PF00563 EAL domain. PF00072 Response_reg. TIGRFAM: TIGR00229 PAS domain S-box. TIGR00254 putative diguanylate cyclase (GGDEF) domain.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical signaling protein;protein_id=CAL96115.1;transl_table=11
AM406670.1	EMBL	gene	3843766	3844074	.	-	.	ID=gene3560;Name=cyt2;gbkey=Gene;gene=cyt2;gene_biotype=protein_coding;locus_tag=azo3500
AM406670.1	EMBL	CDS	3843766	3844074	.	-	0	ID=cds3496;Parent=gene3560;Dbxref=EnsemblGenomes-Gn:azo3500,EnsemblGenomes-Tr:CAL96116,GOA:A1KBB0,InterPro:IPR002324,InterPro:IPR003088,InterPro:IPR009056,UniProtKB/TrEMBL:A1KBB0,NCBI_GP:CAL96116.1;Name=CAL96116.1;Note=probable cytochrome c-552 precursor. Homology to cyt of N. europaea of 52%25 (AAB46987). ELECTRON DONOR FOR CYTOCHROME CD1 IN NITRITE AND NITRATE RESPIRATION. InterPro: Cytochrome c class I (IPR003088)%3B cytochrome c%2Cclass ID (IPR002324) Pfam: cytochrome c signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=cyt2;product=probable cytochrome c-552 precursor;protein_id=CAL96116.1;transl_table=11
AM406670.1	EMBL	gene	3844213	3844836	.	-	.	ID=gene3561;Name=ureG;gbkey=Gene;gene=ureG;gene_biotype=protein_coding;locus_tag=azo3501
AM406670.1	EMBL	CDS	3844213	3844836	.	-	0	ID=cds3497;Parent=gene3561;Dbxref=EnsemblGenomes-Gn:azo3501,EnsemblGenomes-Tr:CAL96117,GOA:A1KBB1,InterPro:IPR003495,InterPro:IPR004400,InterPro:IPR012202,InterPro:IPR027417,NCBI_GP:CAL96117.1;Name=CAL96117.1;Note=Urease accessory protein ureG. Homology to ureG of K. aerognes of 71%25 (AAA25154). Probably facilitates nickel incorporation. Pfam: HypB/UreG nucleotide-binding domain Tigrfam: ureG: urease accessory protein UreG no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ureG;product=urease accessory protein UreG;protein_id=CAL96117.1;transl_table=11
AM406670.1	EMBL	gene	3845086	3845790	.	-	.	ID=gene3562;Name=ureF;gbkey=Gene;gene=ureF;gene_biotype=protein_coding;locus_tag=azo3502
AM406670.1	EMBL	CDS	3845086	3845790	.	-	0	ID=cds3498;Parent=gene3562;Dbxref=EnsemblGenomes-Gn:azo3502,EnsemblGenomes-Tr:CAL96118,GOA:A1KBB2,InterPro:IPR002639,NCBI_GP:CAL96118.1;Name=CAL96118.1;Note=Probable urease accessory protein ureF. Homology to ureF of K. aerogenes of 41%25 (sprot|UREF_KLEAE). UreF is proposed to modulate the activation process of urease by eliminating the binding of nickel irons to noncarbamylated protein InterPro: UreF (IPR002639) Pfam: ureF probable signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ureF;product=probable urease accessory protein UreF;protein_id=CAL96118.1;transl_table=11
AM406670.1	EMBL	gene	3845787	3846266	.	-	.	ID=gene3563;Name=azo3503;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3503
AM406670.1	EMBL	CDS	3845787	3846266	.	-	0	ID=cds3499;Parent=gene3563;Dbxref=EnsemblGenomes-Gn:azo3503,EnsemblGenomes-Tr:CAL96119,GOA:A1KBB3,InterPro:IPR004029,InterPro:IPR007864,InterPro:IPR012406,NCBI_GP:CAL96119.1;Name=CAL96119.1;Note=Region start changed from 3846285 to 3846240 (-45 bases);gbkey=CDS;product=probable urease accessory protein UreE;protein_id=CAL96119.1;transl_table=11
AM406670.1	EMBL	gene	3846323	3848029	.	-	.	ID=gene3564;Name=ureC;gbkey=Gene;gene=ureC;gene_biotype=protein_coding;locus_tag=azo3504
AM406670.1	EMBL	CDS	3846323	3848029	.	-	0	ID=cds3500;Parent=gene3564;Dbxref=EnsemblGenomes-Gn:azo3504,EnsemblGenomes-Tr:CAL96120,GOA:A1KBB4,InterPro:IPR005848,InterPro:IPR006680,InterPro:IPR011059,InterPro:IPR011612,InterPro:IPR017950,InterPro:IPR017951,InterPro:IPR029754,NCBI_GP:CAL96120.1;Name=CAL96120.1;Note=Urease alpha subunit. Homology to ureC of S. meliloti of 75%25 (sprot|URE1_RHIME). Urease (urea amidohydrolase%2C EC: 3.5.1.5) catalyses the hydrolysis of urea to form ammonia and carbamate. The enzyme consists of three structural domains: an alpha subunit (with the C-terminal two-thirds representing the catalytic domain)%2C a beta subunit and a gamma subunit. Pfam: Urease alpha-subunit%2C catalytic domain%3B Urease alpha-subunit N-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ureC;product=urease alpha subunit;protein_id=CAL96120.1;transl_table=11
AM406670.1	EMBL	gene	3848031	3848336	.	-	.	ID=gene3565;Name=azo3505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3505
AM406670.1	EMBL	CDS	3848031	3848336	.	-	0	ID=cds3501;Parent=gene3565;Dbxref=EnsemblGenomes-Gn:azo3505,EnsemblGenomes-Tr:CAL96121,GOA:A1KBB5,InterPro:IPR002019,NCBI_GP:CAL96121.1;Name=CAL96121.1;Note=Region start changed from 3848352 to 3848310 (-42 bases);gbkey=CDS;product=probable urease beta subunit;protein_id=CAL96121.1;transl_table=11
AM406670.1	EMBL	gene	3848368	3848667	.	-	.	ID=gene3566;Name=azo3506;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3506
AM406670.1	EMBL	CDS	3848368	3848667	.	-	0	ID=cds3502;Parent=gene3566;Dbxref=EnsemblGenomes-Gn:azo3506,EnsemblGenomes-Tr:CAL96122,UniProtKB/TrEMBL:A1KBB6,NCBI_GP:CAL96122.1;Name=CAL96122.1;Note=Conserved hypothetical protein. Homology to Daro03003730 of Dechloromonas aromatica of 40%25 (gi|46140350|ref|ZP_00203571.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96122.1;transl_table=11
AM406670.1	EMBL	gene	3848714	3849016	.	-	.	ID=gene3567;Name=ureA;gbkey=Gene;gene=ureA;gene_biotype=protein_coding;locus_tag=azo3507
AM406670.1	EMBL	CDS	3848714	3849016	.	-	0	ID=cds3503;Parent=gene3567;Dbxref=EnsemblGenomes-Gn:azo3507,EnsemblGenomes-Tr:CAL96123,GOA:A1KBB7,InterPro:IPR002026,InterPro:IPR012010,NCBI_GP:CAL96123.1;Name=CAL96123.1;Note=Urease gamma subunit. Homology to ureA of S. meliloti of 71%25 (sprot|URE3_RHIME) Urease (urea amidohydrolase%2C EC: 3.5.1.5) catalyses the hydrolysis of urea to form ammonia and carbamate. The enzyme consists of three structural domains: an alpha subunit (with the C-terminal two-thirds representing the catalytic domain)%2C a beta subunit and a gamma subunit. InterPro: Urease gamma subunit (IPR002026) Pfam: urease%2C gamma subunit Tigrfam: urease_gam: urease gamma subunit no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ureA;product=urease gamma subunit;protein_id=CAL96123.1;transl_table=11
AM406670.1	EMBL	gene	3849059	3849916	.	-	.	ID=gene3568;Name=ureD;gbkey=Gene;gene=ureD;gene_biotype=protein_coding;locus_tag=azo3508
AM406670.1	EMBL	CDS	3849059	3849916	.	-	0	ID=cds3504;Parent=gene3568;Dbxref=EnsemblGenomes-Gn:azo3508,EnsemblGenomes-Tr:CAL96124,GOA:A1KBB8,InterPro:IPR002669,NCBI_GP:CAL96124.1;Name=CAL96124.1;Note=Putative urease accessory protein ureD. PROBABLY FACILITATES NICKEL INCORPORATION. SEEMS TO BE ESSENTIAL FOR UREOLYSIS. InterPro: UreD urease accessory protein Pfam: UreeD urease accessory protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ureD;product=putative urease accessory protein UreD;protein_id=CAL96124.1;transl_table=11
AM406670.1	EMBL	gene	3850094	3850939	.	-	.	ID=gene3569;Name=gch;gbkey=Gene;gene=gch;gene_biotype=protein_coding;locus_tag=azo3509
AM406670.1	EMBL	CDS	3850094	3850939	.	-	0	ID=cds3505;Parent=gene3569;Dbxref=EnsemblGenomes-Gn:azo3509,EnsemblGenomes-Tr:CAL96125,GOA:A1KBB9,InterPro:IPR016428,InterPro:IPR029139,InterPro:IPR029500,NCBI_GP:CAL96125.1;Name=CAL96125.1;Note=TREMBL:Q7NRN0:59%25 identity TREMBL:Q8Y288: 57%25 identity GTP cyclohydrolase I catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes%2C of tetrahydrobiopterin in vertebrates%2C and of pteridine-containing pigments in insects. Hypothetical protein HI1291. IPR001474:GTP_cyclohydroI Pfam:Peptidase_M8:Leishmanolysin%3B Pfam:PF00925: GTP_cyclohydro2%3B TIGRFAM:S21p: ribosomal protein S21%3B~High confidence in function and specificity;gbkey=CDS;gene=gch;product=probable GTP cyclohydrolase I;protein_id=CAL96125.1;transl_table=11
AM406670.1	EMBL	gene	3850971	3853019	.	-	.	ID=gene3570;Name=azo3510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3510
AM406670.1	EMBL	CDS	3850971	3853019	.	-	0	ID=cds3506;Parent=gene3570;Dbxref=EnsemblGenomes-Gn:azo3510,EnsemblGenomes-Tr:CAL96126,GOA:A1KBC0,InterPro:IPR000917,InterPro:IPR017849,InterPro:IPR017850,UniProtKB/TrEMBL:A1KBC0,NCBI_GP:CAL96126.1;Name=CAL96126.1;Note=InterPro: Sulfatase Membrane protein%3B~Specificity unclear;gbkey=CDS;product=sulfatase family protein;protein_id=CAL96126.1;transl_table=11
AM406670.1	EMBL	gene	3853231	3854097	.	-	.	ID=gene3571;Name=azo3511;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3511
AM406670.1	EMBL	CDS	3853231	3854097	.	-	0	ID=cds3507;Parent=gene3571;Dbxref=EnsemblGenomes-Gn:azo3511,EnsemblGenomes-Tr:CAL96127,GOA:A1KBC1,InterPro:IPR018013,UniProtKB/TrEMBL:A1KBC1,NCBI_GP:CAL96127.1;Name=CAL96127.1;Note=Conserved hypothetical secreted protein. Homology to PA0234 of P.aeruginosa of 43%25 (trembl:Q9I6Q4). No domains predicted. Signal peptide present. No TMH present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96127.1;transl_table=11
AM406670.1	EMBL	gene	3854510	3855544	.	+	.	ID=gene3572;Name=ssuA;gbkey=Gene;gene=ssuA;gene_biotype=protein_coding;locus_tag=azo3512
AM406670.1	EMBL	CDS	3854510	3855544	.	+	0	ID=cds3508;Parent=gene3572;Dbxref=EnsemblGenomes-Gn:azo3512,EnsemblGenomes-Tr:CAL96128,GOA:A1KBC2,InterPro:IPR006311,InterPro:IPR015168,InterPro:IPR027939,UniProtKB/TrEMBL:A1KBC2,NCBI_GP:CAL96128.1;Name=CAL96128.1;Note=Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import.Similar to the putative periplasmic-binding protein ssuA precursor in E.coli. SSUA_BACSU:P40400. InterPro:IPR000437%3B Prok_lipoprot_S. IPR001638%3B SBP_bac_3. SMART: SM00062%3B PBPb%3B 1. TMhelix:1. Signal peptide: present.%3B~Specificity unclear;gbkey=CDS;gene=ssuA;product=putative periplasmic-binding protein;protein_id=CAL96128.1;transl_table=11
AM406670.1	EMBL	gene	3855597	3856376	.	+	.	ID=gene3573;Name=azo3513;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3513
AM406670.1	EMBL	CDS	3855597	3856376	.	+	0	ID=cds3509;Parent=gene3573;Dbxref=EnsemblGenomes-Gn:azo3513,EnsemblGenomes-Tr:CAL96129,GOA:A1KBC3,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KBC3,NCBI_GP:CAL96129.1;Name=CAL96129.1;Note=Region start changed from 3855391 to 3855571 (-180 bases);gbkey=CDS;product=putative aliphatic sulfonates transport system%2CATP-binding protein;protein_id=CAL96129.1;transl_table=11
AM406670.1	EMBL	gene	3856392	3857165	.	+	.	ID=gene3574;Name=ssuC;gbkey=Gene;gene=ssuC;gene_biotype=protein_coding;locus_tag=azo3514
AM406670.1	EMBL	CDS	3856392	3857165	.	+	0	ID=cds3510;Parent=gene3574;Dbxref=EnsemblGenomes-Gn:azo3514,EnsemblGenomes-Tr:CAL96130,GOA:A1KBC4,InterPro:IPR000515,UniProtKB/TrEMBL:A1KBC4,NCBI_GP:CAL96130.1;Name=CAL96130.1;Note=Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import. Probably responsible for the translocation of the substrate across the membrane.26%25 Similar to the aliphatic sulfonates permease protein%2C ssuC in E.coli. SWISSPROT:SSUC_ECOLI: P75851 InterPro:IPR000515%3B BPD_transp. Pfam:PF00528%3B BPD_transp%3B 1. InterPro:PF00528: Binding-protein-dependent transport systems inner membrane component. TMhelix:6%3B~Specificity unclear;gbkey=CDS;gene=ssuC;product=putative aliphatic sulfonates transport system%2Cpermease protein;protein_id=CAL96130.1;transl_table=11
AM406670.1	EMBL	gene	3857523	3857933	.	-	.	ID=gene3575;Name=azo3515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3515
AM406670.1	EMBL	CDS	3857523	3857933	.	-	0	ID=cds3511;Parent=gene3575;Dbxref=EnsemblGenomes-Gn:azo3515,EnsemblGenomes-Tr:CAL96131,GOA:A1KBC5,InterPro:IPR001845,InterPro:IPR002577,InterPro:IPR011991,UniProtKB/TrEMBL:A1KBC5,NCBI_GP:CAL96131.1;Name=CAL96131.1;Note=Putative transcriptional regulatory protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative transcriptional regulatory protein;protein_id=CAL96131.1;transl_table=11
AM406670.1	EMBL	gene	3858050	3858604	.	+	.	ID=gene3576;Name=wrbA3;gbkey=Gene;gene=wrbA3;gene_biotype=protein_coding;locus_tag=azo3516
AM406670.1	EMBL	CDS	3858050	3858604	.	+	0	ID=cds3512;Parent=gene3576;Dbxref=EnsemblGenomes-Gn:azo3516,EnsemblGenomes-Tr:CAL96132,GOA:A1KBC6,InterPro:IPR001226,InterPro:IPR005025,InterPro:IPR008254,InterPro:IPR029039,UniProtKB/TrEMBL:A1KBC6,NCBI_GP:CAL96132.1;Name=CAL96132.1;Note=Flavoprotein wrbA3. TREMBL:Q8PGA8: 53%25 identity%2C66%25 similarity. wrbA3 is 26%25 identical to wrbA1 and 23%25 identical to wrbA2 InterPro: IPR008254%3B Flav_nitox_synth. IPR001226%3B Flavodoxin. Pfam:PF00258: flavodoxin%3B TIGR00301: NADP oxidoreductase coenzyme Number of transmembrane helices:0%3B~High confidence in function and specificity;gbkey=CDS;gene=wrbA3;product=probable tryptophan repressor binding protein (flavodoxin);protein_id=CAL96132.1;transl_table=11
AM406670.1	EMBL	gene	3858601	3860079	.	-	.	ID=gene3577;Name=azo3517;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3517
AM406670.1	EMBL	CDS	3858601	3860079	.	-	0	ID=cds3513;Parent=gene3577;Dbxref=EnsemblGenomes-Gn:azo3517,EnsemblGenomes-Tr:CAL96133,GOA:A1KBC7,InterPro:IPR002586,InterPro:IPR004459,InterPro:IPR011698,InterPro:IPR017929,InterPro:IPR027417,InterPro:IPR029062,NCBI_GP:CAL96133.1;Name=CAL96133.1;Note=Region start changed from 3860179 to 3860053 (-126 bases);gbkey=CDS;product=CAL96133.1;protein_id=CAL96133.1;transl_table=11
AM406670.1	EMBL	gene	3860126	3861145	.	+	.	ID=gene3578;Name=cobD2;gbkey=Gene;gene=cobD2;gene_biotype=protein_coding;locus_tag=azo3518
AM406670.1	EMBL	CDS	3860126	3861145	.	+	0	ID=cds3514;Parent=gene3578;Dbxref=EnsemblGenomes-Gn:azo3518,EnsemblGenomes-Tr:CAL96134,GOA:A1KBC8,InterPro:IPR004485,UniProtKB/TrEMBL:A1KBC8,NCBI_GP:CAL96134.1;Name=CAL96134.1;Note=Putative cobalamin biosynthesis protein%2C 48%25 Identity to TrEMBL%3B Q7NXQ1%2CQ63WA3%2CQ88M99. Has Pfam03186%2CCobD_Cbib%2C CobD/Cbib protein. IPR004485%3B This family includes CobD proteins from a number of bacteria%2C in Salmonella this protein is called Cbib. Salmonella CobD is a different protein. This protein is involved in cobalamin biosynthesis and is probably an enzyme responsible for the conversion of adenosylcobyric acid to adenosylcobinamide or adenosylcobinamide phosphate.;gbkey=CDS;gene=cobD2;product=putative cobalamin biosynthesis protein;protein_id=CAL96134.1;transl_table=11
AM406670.1	EMBL	gene	3861138	3862133	.	+	.	ID=gene3579;Name=cobC;gbkey=Gene;gene=cobC;gene_biotype=protein_coding;locus_tag=azo3519
AM406670.1	EMBL	CDS	3861138	3862133	.	+	0	ID=cds3515;Parent=gene3579;Dbxref=EnsemblGenomes-Gn:azo3519,EnsemblGenomes-Tr:CAL96135,GOA:A1KBC9,InterPro:IPR004838,InterPro:IPR004839,InterPro:IPR005860,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1KBC9,NCBI_GP:CAL96135.1;Name=CAL96135.1;Note=Cobalamin biosynthesis protein%2C CobC. CobC is probable involved in the conversion of cobyric acid to cobinamide.Similar to pir|B83486 (48%25) and to sprot|COBC_PSEDE (42%25). InterPro (PF00155): Aminotransferases class-I and II%3B~Specificity unclear;gbkey=CDS;gene=cobC;product=cobalamin biosynthesis protein;protein_id=CAL96135.1;transl_table=11
AM406670.1	EMBL	gene	3862136	3863032	.	+	.	ID=gene3580;Name=btuF;gbkey=Gene;gene=btuF;gene_biotype=protein_coding;locus_tag=azo3520
AM406670.1	EMBL	CDS	3862136	3863032	.	+	0	ID=cds3516;Parent=gene3580;Dbxref=EnsemblGenomes-Gn:azo3520,EnsemblGenomes-Tr:CAL96136,InterPro:IPR002491,UniProtKB/TrEMBL:A1KBD0,NCBI_GP:CAL96136.1;Name=CAL96136.1;Note=Vitamin B12 transport protein btuF precursor. 34%25 Similar to BtuF from E.coli. Part of the binding-protein-dependent transport system for vitamin B12. Acts with btuCD to transport vitamin B12 across the inner membrane. SWISSPROT:BTUF_ECOLI:P37028 InterPro:IPR002491%3B Peripla_BP. Pfam: PF01497%3B Peripla_BP_2%3B 1. Signal peptide: present. Contains 1 iron siderophore/cobalamin periplasmic-binding domain.%3B~High confidence in function and specificity;gbkey=CDS;gene=btuF;product=putative vitamin B12 transport protein;protein_id=CAL96136.1;transl_table=11
AM406670.1	EMBL	gene	3863039	3864103	.	-	.	ID=gene3581;Name=azo3521;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3521
AM406670.1	EMBL	CDS	3863039	3864103	.	-	0	ID=cds3517;Parent=gene3581;Dbxref=EnsemblGenomes-Gn:azo3521,EnsemblGenomes-Tr:CAL96137,GOA:A1KBD1,InterPro:IPR001915,UniProtKB/TrEMBL:A1KBD1,NCBI_GP:CAL96137.1;Name=CAL96137.1;Note=Conserved hypothetical peptidase. Homology to ebA3686 of Azoarcus sp. EbN1 of 45%25 (gnl|keqq|eba:ebA3686(KEGG)) . Pfam: Peptidase family M48. signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical peptidase;protein_id=CAL96137.1;transl_table=11
AM406670.1	EMBL	gene	3864452	3866065	.	+	.	ID=gene3582;Name=rhlE3;gbkey=Gene;gene=rhlE3;gene_biotype=protein_coding;locus_tag=azo3522
AM406670.1	EMBL	CDS	3864452	3866065	.	+	0	ID=cds3518;Parent=gene3582;Dbxref=EnsemblGenomes-Gn:azo3522,EnsemblGenomes-Tr:CAL96138,GOA:A1KBD2,InterPro:IPR000629,InterPro:IPR001650,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR014014,InterPro:IPR027417,InterPro:IPR028622,UniProtKB/TrEMBL:A1KBD2,NCBI_GP:CAL96138.1;Name=CAL96138.1;Note=ATP-dependent RNA helicase rhlB (EC 3.6.1.-). Can carry out ATP-dependent unwinding of double stranded RNA. Has a role in RNA decay. Involved in the RNA degradosome a multi-enzyme complex important in RNA processing and messenger RNA degradation.%3B~High confidence in function and specificity;gbkey=CDS;gene=rhlE3;product=putative ATP-dependent RNA helicase;protein_id=CAL96138.1;transl_table=11
AM406670.1	EMBL	gene	3866142	3867860	.	-	.	ID=gene3583;Name=leuA2;gbkey=Gene;gene=leuA2;gene_biotype=protein_coding;locus_tag=azo3523
AM406670.1	EMBL	CDS	3866142	3867860	.	-	0	ID=cds3519;Parent=gene3583;Dbxref=EnsemblGenomes-Gn:azo3523,EnsemblGenomes-Tr:CAL96139,GOA:A1KBD3,InterPro:IPR000891,InterPro:IPR002034,InterPro:IPR005668,InterPro:IPR013709,InterPro:IPR013785,NCBI_GP:CAL96139.1;Name=CAL96139.1;Note=Alpha-isopropylmalate synthase catalyses the first step in the biosynthesis of leucine%2C the condensation of acetyl-CoA and alpha- ketoisovalerate to form 2-isopropylmalate synthase. Similar to sprot|LEU1_PSEAE (59%25) and to sprot|LE12_RALSO (68%25). Pfam (PF00682): HMG-CoA Lyase-like family%3B~High confidence in function and specificity;gbkey=CDS;gene=leuA2;product=2-isopropylmalate synthase;protein_id=CAL96139.1;transl_table=11
AM406670.1	EMBL	gene	3868239	3868895	.	-	.	ID=gene3584;Name=azo3524;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3524
AM406670.1	EMBL	CDS	3868239	3868895	.	-	0	ID=cds3520;Parent=gene3584;Dbxref=EnsemblGenomes-Gn:azo3524,EnsemblGenomes-Tr:CAL96140,GOA:A1KBD4,InterPro:IPR000415,InterPro:IPR012825,InterPro:IPR029479,UniProtKB/TrEMBL:A1KBD4,NCBI_GP:CAL96140.1;Name=CAL96140.1;Note=Conserved hypothetical nitroreductase. Homology to cv1555 of C. violaceum of 72%25 (trembl|Q7NXS1). Involved in the reduction of nitrogen containing compounds. InterPro: Nitroreductase family (IPR000415). Pfam: Nitroreductase family. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical nitroreductase;protein_id=CAL96140.1;transl_table=11
AM406670.1	EMBL	gene	3868933	3869736	.	-	.	ID=gene3585;Name=azo3525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3525
AM406670.1	EMBL	CDS	3868933	3869736	.	-	0	ID=cds3521;Parent=gene3585;Dbxref=EnsemblGenomes-Gn:azo3525,EnsemblGenomes-Tr:CAL96141,InterPro:IPR029063,UniProtKB/TrEMBL:A1KBD5,NCBI_GP:CAL96141.1;Name=CAL96141.1;Note=TREMBL:Q7NZN8 (43%25 identity%2C 53%25 similarity)%3B .;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96141.1;transl_table=11
AM406670.1	EMBL	gene	3869994	3870761	.	+	.	ID=gene3586;Name=azo3526;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3526
AM406670.1	EMBL	CDS	3869994	3870761	.	+	0	ID=cds3522;Parent=gene3586;Dbxref=EnsemblGenomes-Gn:azo3526,EnsemblGenomes-Tr:CAL96142,InterPro:IPR001279,UniProtKB/TrEMBL:A1KBD6,NCBI_GP:CAL96142.1;Name=CAL96142.1;Note=Conserved hypothetical flavoprotein. Homology to tde2498 of T. denticola of 46%25 (tremblnew|AAS13015). InterPro: Metallo-beta-lactamase superfamily (IPR001279). Pfam: Metallo-beta-lactamase superfamily. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical flavoprotein;protein_id=CAL96142.1;transl_table=11
AM406670.1	EMBL	gene	3870767	3872938	.	+	.	ID=gene3587;Name=azo3527;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3527
AM406670.1	EMBL	CDS	3870767	3872938	.	+	0	ID=cds3523;Parent=gene3587;Dbxref=EnsemblGenomes-Gn:azo3527,EnsemblGenomes-Tr:CAL96143,InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR029787,UniProtKB/TrEMBL:A1KBD7,NCBI_GP:CAL96143.1;Name=CAL96143.1;Note=GGDEF/EAL-domain containing protein;gbkey=CDS;product=GGDEF/EAL-domain containing protein;protein_id=CAL96143.1;transl_table=11
AM406670.1	EMBL	gene	3873423	3874049	.	+	.	ID=gene3588;Name=azo3528;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3528
AM406670.1	EMBL	CDS	3873423	3874049	.	+	0	ID=cds3524;Parent=gene3588;Dbxref=EnsemblGenomes-Gn:azo3528,EnsemblGenomes-Tr:CAL96144,GOA:A1KBD8,InterPro:IPR002751,UniProtKB/TrEMBL:A1KBD8,NCBI_GP:CAL96144.1;Name=CAL96144.1;Note=Conserved hypothetical membrane protein. Homology to blr3274 of B. japonicum of 33%25 (gnl|keqq|bja:blr3274(KEGG)). Pfam: weak hit to CbiM%2C an integral membrane protein involved in cobalamin synthesis. TMHMM reporting 5 transmembrane helices. No signal peptide.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96144.1;transl_table=11
AM406670.1	EMBL	gene	3874055	3874870	.	+	.	ID=gene3589;Name=azo3529;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3529
AM406670.1	EMBL	CDS	3874055	3874870	.	+	0	ID=cds3525;Parent=gene3589;Dbxref=EnsemblGenomes-Gn:azo3529,EnsemblGenomes-Tr:CAL96145,GOA:A1KBD9,InterPro:IPR000878,InterPro:IPR003043,InterPro:IPR006362,InterPro:IPR014776,InterPro:IPR014777,UniProtKB/TrEMBL:A1KBD9,NCBI_GP:CAL96145.1;Name=CAL96145.1;Note=Probable Precorrin-4 C11-methyltransferase%2C47%25 Identity to TrEMBL%3BQ8GDX1%2C O26702. SwissProt%3BO87696. Has PF00590%2C Tetrapyrrole (Corrin/Porphyrin) Methylases%3BIPR000878 Cor/por_Metransf%3B This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function%2C including P45528. This family includes the methylase Dipthine synthase. Uroporphyrin-III C-methyltransferase (EC: 2.1.1.107) (SUMT)catalyzes the transfer of two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. SUMT is the first enzyme specific to the cobalamin pathway and precorrin-2 is a common intermediate in the biosynthesis of corrinoids such as vitamin B12%2C siroheme and coenzyme F430. The sequences of SUMT from a variety of bacterial and archaeal species are currently available. In species such as Bacillus megaterium (gene cobA)%2CPseudomonas denitrificans (cobA) or Methanobacterium ivanovii (gene corA) SUMT is a protein of about 25 to 30 kD. In Escherichia coli and related bacteria%2C the cysG protein%2C which is involved in the biosynthesis of siroheme%2C is a multifunctional protein composed of a N-terminal domain%2C probably involved in transforming precorrin-2 into siroheme%2C and a C-terminal domain which has SUMT activity.;gbkey=CDS;product=Precorrin-4 C11-methyltransferase;protein_id=CAL96145.1;transl_table=11
AM406670.1	EMBL	gene	3874867	3875796	.	+	.	ID=gene3590;Name=cbiX;gbkey=Gene;gene=cbiX;gene_biotype=protein_coding;locus_tag=azo3530
AM406670.1	EMBL	CDS	3874867	3875796	.	+	0	ID=cds3526;Parent=gene3590;Dbxref=EnsemblGenomes-Gn:azo3530,EnsemblGenomes-Tr:CAL96146,GOA:A1KBE0,InterPro:IPR002762,UniProtKB/TrEMBL:A1KBE0,NCBI_GP:CAL96146.1;Name=CAL96146.1;Note=CbiX conserved hypothetical protein. Function unknown. Cobalamin biosynthesis pathway.%3B~Function unclear;gbkey=CDS;gene=cbiX;product=conserved hypothetical protein cbiX;protein_id=CAL96146.1;transl_table=11
AM406670.1	EMBL	gene	3875800	3876477	.	+	.	ID=gene3591;Name=cbiC;gbkey=Gene;gene=cbiC;gene_biotype=protein_coding;locus_tag=azo3531
AM406670.1	EMBL	CDS	3875800	3876477	.	+	0	ID=cds3527;Parent=gene3591;Dbxref=EnsemblGenomes-Gn:azo3531,EnsemblGenomes-Tr:CAL96147,GOA:A1KBE1,InterPro:IPR003722,UniProtKB/TrEMBL:A1KBE1,NCBI_GP:CAL96147.1;Name=CAL96147.1;Note=Precorrin-8X methylmutase . CATALYZES THE CONVERSION OF PRECORRIN-8X TO HYDROGENOBYRINIC ACID%3B A Cobalamin biosynthesis precorrin isomerase. METHYL MIGRATION REACTION DURING THE TRANSFORMATION OF PRECORRIN-3 TO FORM COBYRINIC ACID (BY SIMILARITY). InterPro: Precorrin-8X methylmutase CbiC/CobH TIGRFAM: redox_disulf_1: redox-active disulfide%3B~High confidence in function and specificity;gbkey=CDS;gene=cbiC;product=Precorrin-8X methylmutase;protein_id=CAL96147.1;transl_table=11
AM406670.1	EMBL	gene	3876482	3877690	.	+	.	ID=gene3592;Name=cbiD;gbkey=Gene;gene=cbiD;gene_biotype=protein_coding;locus_tag=azo3532
AM406670.1	EMBL	CDS	3876482	3877690	.	+	0	ID=cds3528;Parent=gene3592;Dbxref=EnsemblGenomes-Gn:azo3532,EnsemblGenomes-Tr:CAL96148,GOA:A1KBE2,InterPro:IPR002748,UniProtKB/TrEMBL:A1KBE2,NCBI_GP:CAL96148.1;Name=CAL96148.1;Note=Cobalamin biosynthesis protein. Function unknown. Pathway cobalamin biosynthesis. InterPro: CbiD protein TIGRFAM: cbiD: cobalamin biosynthesis protein CbiD%3B~High confidence in function and specificity;gbkey=CDS;gene=cbiD;product=CbiD protein;protein_id=CAL96148.1;transl_table=11
AM406670.1	EMBL	gene	3877680	3878990	.	+	.	ID=gene3593;Name=cbiE;gbkey=Gene;gene=cbiE;gene_biotype=protein_coding;locus_tag=azo3533
AM406670.1	EMBL	CDS	3877680	3878990	.	+	0	ID=cds3529;Parent=gene3593;Dbxref=EnsemblGenomes-Gn:azo3533,EnsemblGenomes-Tr:CAL96149,GOA:A1KBE3,InterPro:IPR000878,InterPro:IPR006365,InterPro:IPR012818,InterPro:IPR014008,InterPro:IPR014776,InterPro:IPR014777,InterPro:IPR029063,UniProtKB/TrEMBL:A1KBE3,NCBI_GP:CAL96149.1;Name=CAL96149.1;Note=Precorrin-6 methyltransferase (Precorrin-6Y methylase). CATALYZES THE METHYLATION OF BOTH C-5 AND C-15 IN PRECORRIN-6Y TO FORM PRECORRIN-8X. InterPro: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=cbiE;product=Precorrin-6Y C(5%2C15)-methyltransferase (decarboxylating);protein_id=CAL96149.1;transl_table=11
AM406670.1	EMBL	gene	3878980	3879933	.	+	.	ID=gene3594;Name=cbiL;gbkey=Gene;gene=cbiL;gene_biotype=protein_coding;locus_tag=azo3534
AM406670.1	EMBL	CDS	3878980	3879933	.	+	0	ID=cds3530;Parent=gene3594;Dbxref=EnsemblGenomes-Gn:azo3534,EnsemblGenomes-Tr:CAL96150,GOA:A1KBE4,InterPro:IPR000878,InterPro:IPR006364,InterPro:IPR014777,UniProtKB/TrEMBL:A1KBE4,NCBI_GP:CAL96150.1;Name=CAL96150.1;Note=Precorrin-2 C20-methyltransferase (EC 2.1.1.130) (S-adenosyl-L- methionine:precorrin-2 methyltransferase) (SP2MT). METHYLATES PRECORRIN-2 AT THE C-20 POSITION TO PRODUCE PRECORRIN-3A.%3B~High confidence in function and specificity;gbkey=CDS;gene=cbiL;product=Precorrin-2 C20-methyltransferase;protein_id=CAL96150.1;transl_table=11
AM406670.1	EMBL	gene	3880286	3881062	.	+	.	ID=gene3595;Name=cbiGa;gbkey=Gene;gene=cbiGa;gene_biotype=protein_coding;locus_tag=azo3535
AM406670.1	EMBL	CDS	3880286	3881062	.	+	0	ID=cds3531;Parent=gene3595;Dbxref=EnsemblGenomes-Gn:azo3535,EnsemblGenomes-Tr:CAL96151,InterPro:IPR021744,InterPro:IPR021745,UniProtKB/TrEMBL:A1KBE5,NCBI_GP:CAL96151.1;Name=CAL96151.1;Note=putative Cobalamin (vitamin B12) biosynthesis CbiG protein%2C truncated. Homology to the N-terminus of cbiG of b. magaterium of 39%25 (gi|3724046|emb|CAA04315.1|(nr)). Pfam: CibG%2C CbiG proteins are required for cobalamin (vitamin B 12 ) biosynthesis. IPR012407: Cobalamin (vitamin B12) biosynthesis CbiG. CbiG is one of the enzymes specific to the anaerobic route of cobalamin biosynthesis e.g.%2C in Salmonella typhimurium. While its specific role in this pathway is not known yet%2C it has been speculated that CbiG may participate in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6. This step requires opening of the delta-lactone ring%2Cexcision of acetaldehyde and C-1 methylation. Alternatively%2C it has been suggested that it may participate in ring contraction. no signal peptide. no TMHs%3B~Function unclear;gbkey=CDS;gene=cbiGa;product=putative Cobalamin (vitamin B12) biosynthesis CbiG protein%2C truncated;protein_id=CAL96151.1;transl_table=11
AM406670.1	EMBL	gene	3881071	3881472	.	+	.	ID=gene3596;Name=cbiGb;gbkey=Gene;gene=cbiGb;gene_biotype=protein_coding;locus_tag=azo3536
AM406670.1	EMBL	CDS	3881071	3881472	.	+	0	ID=cds3532;Parent=gene3596;Dbxref=EnsemblGenomes-Gn:azo3536,EnsemblGenomes-Tr:CAL96152,GOA:A1KBE6,InterPro:IPR002750,UniProtKB/TrEMBL:A1KBE6,NCBI_GP:CAL96152.1;Name=CAL96152.1;Note=C-terminal part of CbiG protein. Cobalamin biosynthesis pathway.Precorrin methylase%3B~High confidence in function and specificity;gbkey=CDS;gene=cbiGb;product=putative Cobalamin (vitamin B12) biosynthesis CbiG protein%2C truncated;protein_id=CAL96152.1;transl_table=11
AM406670.1	EMBL	gene	3881469	3882437	.	+	.	ID=gene3597;Name=cbiH;gbkey=Gene;gene=cbiH;gene_biotype=protein_coding;locus_tag=azo3537
AM406670.1	EMBL	CDS	3881469	3882437	.	+	0	ID=cds3533;Parent=gene3597;Dbxref=EnsemblGenomes-Gn:azo3537,EnsemblGenomes-Tr:CAL96153,GOA:A1KBE7,InterPro:IPR000878,InterPro:IPR006363,InterPro:IPR014776,InterPro:IPR014777,UniProtKB/TrEMBL:A1KBE7,NCBI_GP:CAL96153.1;Name=CAL96153.1;Note=Precorrin-3B C17- methyltransferase. METHYLTRANSFERASE THAT CATALYZES THE METHYLATION OF C-17 IN PRECORRIN-3B TO FORM PRECORRIN-4 (BY SIMILARITY). InterPro: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=cbiH;product=Precorrin-3B C(17)-methyltransferase;protein_id=CAL96153.1;transl_table=11
AM406670.1	EMBL	gene	3882434	3882826	.	+	.	ID=gene3598;Name=azo3538;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3538
AM406670.1	EMBL	CDS	3882434	3882826	.	+	0	ID=cds3534;Parent=gene3598;Dbxref=EnsemblGenomes-Gn:azo3538,EnsemblGenomes-Tr:CAL96154,InterPro:IPR012336,UniProtKB/TrEMBL:A1KBE8,NCBI_GP:CAL96154.1;Name=CAL96154.1;Note=Conserved hypothetical ferredoxin. Homology to rsp0627 of R. solanacearum of 46%25 (trembl|Q8XS54). Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical ferredoxin;protein_id=CAL96154.1;transl_table=11
AM406670.1	EMBL	gene	3883237	3883746	.	-	.	ID=gene3599;Name=azo3539;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3539
AM406670.1	EMBL	CDS	3883237	3883746	.	-	0	ID=cds3535;Parent=gene3599;Dbxref=EnsemblGenomes-Gn:azo3539,EnsemblGenomes-Tr:CAL96155,UniProtKB/TrEMBL:A1KBE9,NCBI_GP:CAL96155.1;Name=CAL96155.1;Note=Hypothetical secreted protein. no homology of the entire protein to the data bank. no domains predicted. signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL96155.1;transl_table=11
AM406670.1	EMBL	gene	3883931	3885445	.	+	.	ID=gene3600;Name=azo3540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3540
AM406670.1	EMBL	CDS	3883931	3885445	.	+	0	ID=cds3536;Parent=gene3600;Dbxref=EnsemblGenomes-Gn:azo3540,EnsemblGenomes-Tr:CAL96156,GOA:A1KBF0,InterPro:IPR000524,InterPro:IPR004839,InterPro:IPR011991,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:A1KBF0,NCBI_GP:CAL96156.1;Name=CAL96156.1;Note=Conserved hypothetical transcriptional regulatory protein. Homology to rsc0599 of R. solanacearum of 63%25 (trembl|Q8Y1U0). InterPro: Bacterial regulatory proteins GntR family (IPR000524). Pfam: Bacterial regulatory protein%2C gntR family%3B Aminotransferase classI and II. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical transcriptional regulatory protein;protein_id=CAL96156.1;transl_table=11
AM406670.1	EMBL	gene	3885550	3886434	.	-	.	ID=gene3601;Name=azo3541;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3541
AM406670.1	EMBL	CDS	3885550	3886434	.	-	0	ID=cds3537;Parent=gene3601;Dbxref=EnsemblGenomes-Gn:azo3541,EnsemblGenomes-Tr:CAL96157,GOA:A1KBF1,InterPro:IPR029063,UniProtKB/TrEMBL:A1KBF1,NCBI_GP:CAL96157.1;Name=CAL96157.1;Note=Hypothetical methyltransferase. no Homology of the entire protein with the data bank. Pfam: Putative methyltransferase This is a family of hypothetical proteins which are putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. Interpro: SAM (and some other nucleotide) binding motif(IPR000051) no signal peptide no TMHs;gbkey=CDS;product=hypothetical methyltransferase;protein_id=CAL96157.1;transl_table=11
AM406670.1	EMBL	gene	3886435	3887310	.	-	.	ID=gene3602;Name=azo3542;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3542
AM406670.1	EMBL	CDS	3886435	3887310	.	-	0	ID=cds3538;Parent=gene3602;Dbxref=EnsemblGenomes-Gn:azo3542,EnsemblGenomes-Tr:CAL96158,GOA:A1KBF2,InterPro:IPR004045,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:A1KBF2,NCBI_GP:CAL96158.1;Name=CAL96158.1;Note=Conserved hypothetical glutathione transferase. Homology to psto0703 of P. syringae of 74%25 (trembl|Q889P6). Bacterial GSTs of known function often have a specific%2C growth-supporting role in biodegradative metabolism Pfam. Glutathione S-transferase%2C N-terminal%3B Glutathione S-transferase%2C C-terminal. no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical glutathione transferase;protein_id=CAL96158.1;transl_table=11
AM406670.1	EMBL	gene	3887435	3888298	.	-	.	ID=gene3603;Name=azo3543;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3543
AM406670.1	EMBL	CDS	3887435	3888298	.	-	0	ID=cds3539;Parent=gene3603;Dbxref=EnsemblGenomes-Gn:azo3543,EnsemblGenomes-Tr:CAL96159,InterPro:IPR013424,UniProtKB/TrEMBL:A1KBF3,NCBI_GP:CAL96159.1;Name=CAL96159.1;Note=Hypothetical secreted protein. No homology of the entire protein to the data bank. Pfam: DUF1555 (domain of unknown function). signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL96159.1;transl_table=11
AM406670.1	EMBL	gene	3888597	3889892	.	+	.	ID=gene3604;Name=azo3544;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3544
AM406670.1	EMBL	CDS	3888597	3889892	.	+	0	ID=cds3540;Parent=gene3604;Dbxref=EnsemblGenomes-Gn:azo3544,EnsemblGenomes-Tr:CAL96160,GOA:A1KBF4,InterPro:IPR003702,InterPro:IPR026888,UniProtKB/TrEMBL:A1KBF4,NCBI_GP:CAL96160.1;Name=CAL96160.1;Note=probable 4-hydroxybutyrate coenzyme A transferase. Homology to cat2 of C. kluyveri of 43%25 (sprot|CAT2_CLOKL) InterPro: Acetyl-CoA hydrolase/transferase (IPR003702) Pfam: Acetyl-CoA hydrolase/transferase no signal peptide no TMHS%3B~Family membership;gbkey=CDS;product=probable 4-hydroxybutyrate coenzyme A transferase;protein_id=CAL96160.1;transl_table=11
AM406670.1	EMBL	gene	3889954	3890610	.	+	.	ID=gene3605;Name=yeaS;gbkey=Gene;gene=yeaS;gene_biotype=protein_coding;locus_tag=azo3545
AM406670.1	EMBL	CDS	3889954	3890610	.	+	0	ID=cds3541;Parent=gene3605;Dbxref=EnsemblGenomes-Gn:azo3545,EnsemblGenomes-Tr:CAL96161,GOA:A1KBF5,InterPro:IPR001123,UniProtKB/TrEMBL:A1KBF5,NCBI_GP:CAL96161.1;Name=CAL96161.1;Note=Conserved hypothetical transport membrane protein. Homology to rsc1520 of R. solanacearum of 59%25 (trembl|Q8XZ84). Pfam: LysE type translocator. Tigrfam: 2A76: Homoserine/Threonine efflux protein. no signal peptide. probable 6 TMHs%3B~Family membership;gbkey=CDS;gene=yeaS;product=conserved hypothetical transport membrane protein;protein_id=CAL96161.1;transl_table=11
AM406670.1	EMBL	gene	3890614	3892104	.	-	.	ID=gene3606;Name=ctaQ;gbkey=Gene;gene=ctaQ;gene_biotype=protein_coding;locus_tag=azo3546
AM406670.1	EMBL	CDS	3890614	3892104	.	-	0	ID=cds3542;Parent=gene3606;Dbxref=EnsemblGenomes-Gn:azo3546,EnsemblGenomes-Tr:CAL96162,GOA:A1KBF6,InterPro:IPR001333,UniProtKB/TrEMBL:A1KBF6,NCBI_GP:CAL96162.1;Name=CAL96162.1;Note=Probable carboxypeptidase TAQ. Homology to ctaQ of T. aquaticus of 40%25 (SWISSPROT:CTAQ_THEAQ) Releases amino acids sequentially from the C-terminus with a broad substrate specificity (except for proline). Pfam: carboxypeptidas Taq (M32) metallopep no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=ctaQ;product=probable carboxypeptidase TAQ;protein_id=CAL96162.1;transl_table=11
AM406670.1	EMBL	gene	3892274	3892729	.	+	.	ID=gene3607;Name=azo3547;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3547
AM406670.1	EMBL	CDS	3892274	3892729	.	+	0	ID=cds3543;Parent=gene3607;Dbxref=EnsemblGenomes-Gn:azo3547,EnsemblGenomes-Tr:CAL96163,UniProtKB/TrEMBL:A1KBF7,NCBI_GP:CAL96163.1;Name=CAL96163.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. signal peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL96163.1;transl_table=11
AM406670.1	EMBL	gene	3892726	3893553	.	+	.	ID=gene3608;Name=azo3548;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3548
AM406670.1	EMBL	CDS	3892726	3893553	.	+	0	ID=cds3544;Parent=gene3608;Dbxref=EnsemblGenomes-Gn:azo3548,EnsemblGenomes-Tr:CAL96164,InterPro:IPR014547,UniProtKB/TrEMBL:A1KBF8,NCBI_GP:CAL96164.1;Name=CAL96164.1;Note=Conserved hypothetical secreted protein. Homology to cv0063 of C. violaceum of 41%25 (trembl|Q7P1Z9(SRS)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96164.1;transl_table=11
AM406670.1	EMBL	gene	3893550	3894416	.	-	.	ID=gene3609;Name=psD;gbkey=Gene;gene=psD;gene_biotype=protein_coding;locus_tag=azo3549
AM406670.1	EMBL	CDS	3893550	3894416	.	-	0	ID=cds3545;Parent=gene3609;Dbxref=EnsemblGenomes-Gn:azo3549,EnsemblGenomes-Tr:CAL96165,GOA:A1KBF9,InterPro:IPR003817,NCBI_GP:CAL96165.1;Name=CAL96165.1;Note=Phosphatidylserine decarboxylase proenzyme :-Phosphatidylserine decarboxylase alpha chain%3B Phosphatidylserine decarboxylase beta chain]. Activity:-phosphatidyl-L-serine %3D phosphatidylethanolamine + CO2 Entry name:- SWISSPROT:PSD_ECOLI Prim. accession # P10740 Identities %3D 142/251 (56%25) InterPro:- IPR003817%3B PS_Dcarbxylase. IPR005221%3B PS_decarb. Pfam:- PF02666%3B PS_Dcarbxylase%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.00 Number of predicted TMHs: 0%3B~High confidence in function and specificity;gbkey=CDS;gene=psD;product=probable phosphatidylserine decarboxylase proenzyme;protein_id=CAL96165.1;transl_table=11
AM406670.1	EMBL	gene	3894532	3895827	.	-	.	ID=gene3610;Name=cobB;gbkey=Gene;gene=cobB;gene_biotype=protein_coding;locus_tag=azo3550
AM406670.1	EMBL	CDS	3894532	3895827	.	-	0	ID=cds3546;Parent=gene3610;Dbxref=EnsemblGenomes-Gn:azo3550,EnsemblGenomes-Tr:CAL96166,GOA:A1KBG0,InterPro:IPR002586,InterPro:IPR011698,InterPro:IPR017929,InterPro:IPR027417,InterPro:IPR029062,UniProtKB/TrEMBL:A1KBG0,NCBI_GP:CAL96166.1;Name=CAL96166.1;Note=Cobyrinic acid AC-diamide synthase. Responsible for the amidation of carboxylic groups at position A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP is hydrogenolyzed for each amidation (By similarity). cbiA: cobyrinic acid ac-diamide synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=cobB;product=cobyrinic acid a%2Cc-diamide synthase;protein_id=CAL96166.1;transl_table=11
AM406670.1	EMBL	gene	3895824	3896717	.	-	.	ID=gene3611;Name=cobA2;gbkey=Gene;gene=cobA2;gene_biotype=protein_coding;locus_tag=azo3551
AM406670.1	EMBL	CDS	3895824	3896717	.	-	0	ID=cds3547;Parent=gene3611;Dbxref=EnsemblGenomes-Gn:azo3551,EnsemblGenomes-Tr:CAL96167,GOA:A1KBG1,InterPro:IPR000878,InterPro:IPR003043,InterPro:IPR006366,InterPro:IPR014776,InterPro:IPR014777,UniProtKB/TrEMBL:A1KBG1,NCBI_GP:CAL96167.1;Name=CAL96167.1;Note=Uroporphyrin-III C-methyltransferase (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM). TIGRFAM: dph5: diphthine synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=cobA2;product=Uroporphyrin-III C-methyltransferase;protein_id=CAL96167.1;transl_table=11
AM406670.1	EMBL	gene	3896722	3897342	.	-	.	ID=gene3612;Name=cobO;gbkey=Gene;gene=cobO;gene_biotype=protein_coding;locus_tag=azo3552
AM406670.1	EMBL	CDS	3896722	3897342	.	-	0	ID=cds3548;Parent=gene3612;Dbxref=EnsemblGenomes-Gn:azo3552,EnsemblGenomes-Tr:CAL96168,GOA:A1KBG2,InterPro:IPR003724,InterPro:IPR025826,InterPro:IPR027417,UniProtKB/TrEMBL:A1KBG2,NCBI_GP:CAL96168.1;Name=CAL96168.1;Note=Cob(I)alamin adenosyltransferase (Corrinoid adenosyltransferase) (Corrinoid ADOtransferase activity). REQUIRED FOR BOTH DE NOVO SYNTHESIS OF THE CORRIN RING FOR THE ASSIMILATION OF EXOGENOUS CORRINOIDS. PARTICIPATES IN THE ADENOSYLATION OF A VARIETY OF INCOMPLETE AND COMPLETE CORRINOIDS. InterPro: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TIGRFAM: cobA: cob(I)alamin adenosyltransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=cobO;product=Cob(I)yrinic acid a%2Cc-diamide adenosyltransferase;protein_id=CAL96168.1;transl_table=11
AM406670.1	EMBL	gene	3897371	3898168	.	-	.	ID=gene3613;Name=azo3553;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3553
AM406670.1	EMBL	CDS	3897371	3898168	.	-	0	ID=cds3549;Parent=gene3613;Dbxref=EnsemblGenomes-Gn:azo3553,EnsemblGenomes-Tr:CAL96169,GOA:A1KBG3,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KBG3,NCBI_GP:CAL96169.1;Name=CAL96169.1;Note=37%25 Similar to the iron(III)-hydroxamate transport membrane protein%2C fhuC in E.coli.Part of the ABC transporter complex fhuACDB involved in iron(III)-hydroxamate import. Probably responsible for energy coupling to the transport system. SWISSPROT:FHUC_ECOLI:P07821 InterPro:IPR003593%3B AAA_ATPase.IPR003439%3B ABC_transporter. Pfam:PF00005%3B ABC_tran%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;product=putative ABC-type transporter%2C ATPase component;protein_id=CAL96169.1;transl_table=11
AM406670.1	EMBL	gene	3898168	3899148	.	-	.	ID=gene3614;Name=azo3554;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3554
AM406670.1	EMBL	CDS	3898168	3899148	.	-	0	ID=cds3550;Parent=gene3614;Dbxref=EnsemblGenomes-Gn:azo3554,EnsemblGenomes-Tr:CAL96170,GOA:A1KBG4,InterPro:IPR000522,InterPro:IPR029022,UniProtKB/TrEMBL:A1KBG4,NCBI_GP:CAL96170.1;Name=CAL96170.1;Note=Region start changed from 3899167 to 3899122 (-45 bases);gbkey=CDS;product=putative ABC transporter system%2C permease protein;protein_id=CAL96170.1;transl_table=11
AM406670.1	EMBL	gene	3899200	3901071	.	-	.	ID=gene3615;Name=azo3555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3555
AM406670.1	EMBL	CDS	3899200	3901071	.	-	0	ID=cds3551;Parent=gene3615;Dbxref=EnsemblGenomes-Gn:azo3555,EnsemblGenomes-Tr:CAL96171,GOA:A1KBG5,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1KBG5,NCBI_GP:CAL96171.1;Name=CAL96171.1;Note=COBALAMIN RECEPTOR PROTEIN.%3B~Specificity unclear;gbkey=CDS;product=TonB-dependent receptor%2C putative;protein_id=CAL96171.1;transl_table=11
AM406670.1	EMBL	gene	3901150	3903090	.	-	.	ID=gene3616;Name=azo3556;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3556
AM406670.1	EMBL	CDS	3901150	3903090	.	-	0	ID=cds3552;Parent=gene3616;Dbxref=EnsemblGenomes-Gn:azo3556,EnsemblGenomes-Tr:CAL96172,GOA:A1KBG6,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1KBG6,NCBI_GP:CAL96172.1;Name=CAL96172.1;Note=Putative outer membrane TonB-dependent receptor%2Cprobably involved in iron metabolism. 20%25 Similar to the IrgA enterobactine outer membrane receptor in V. cholerae. INVOLVED IN THE INITIAL STEP OF IRON UPTAKE BY BINDING FERRIC VIBRIOBACTIN AN IRON CHELATIN SIDEROPHORE THAT ALLOWS V.CHOLERAE TO EXTRACT IRON FROM THE ENVIRONMENT. SWISSPROT:IRGA_VIBCH:P27772. 21%25 TonB_boxC. Pfam:PF00593%3B TonB_dep_Rec%3B 1.%3B~Specificity unclear;gbkey=CDS;product=putative TonB-dependent receptor;protein_id=CAL96172.1;transl_table=11
AM406670.1	EMBL	gene	3903450	3904043	.	+	.	ID=gene3617;Name=cobU;gbkey=Gene;gene=cobU;gene_biotype=protein_coding;locus_tag=azo3557
AM406670.1	EMBL	CDS	3903450	3904043	.	+	0	ID=cds3553;Parent=gene3617;Dbxref=EnsemblGenomes-Gn:azo3557,EnsemblGenomes-Tr:CAL96173,GOA:A1KBG7,InterPro:IPR003203,InterPro:IPR027417,UniProtKB/TrEMBL:A1KBG7,NCBI_GP:CAL96173.1;Name=CAL96173.1;Note=Bifunctional cobalamin biosynthesis protein cobU [Includes: Cobinamide kinase%3B Cobinamide phosphate guanylyltransferase]. ATP-dependent phosphorylation of adenosylcobinamide and adds GMP to adenosylcobinamide phosphate. InterPro: Cobalbumin biosynthesis enzyme%3B~High confidence in function and specificity;gbkey=CDS;gene=cobU;product=cobinamide kinase/cobinamide phosphate guanylyltransferase;protein_id=CAL96173.1;transl_table=11
AM406670.1	EMBL	gene	3904044	3905105	.	-	.	ID=gene3618;Name=azo3558;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3558
AM406670.1	EMBL	CDS	3904044	3905105	.	-	0	ID=cds3554;Parent=gene3618;Dbxref=EnsemblGenomes-Gn:azo3558,EnsemblGenomes-Tr:CAL96174,GOA:A1KBG8,InterPro:IPR001915,UniProtKB/TrEMBL:A1KBG8,NCBI_GP:CAL96174.1;Name=CAL96174.1;Note=Conserved hypothetical membrane protein. Homology to gsu0462 of G. sulfurreducens of 41%25 (AAR33794). probable 2 TMHs. no signal peptide. No domains predicted.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96174.1;transl_table=11
AM406670.1	EMBL	gene	3905102	3906664	.	-	.	ID=gene3619;Name=azo3559;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3559
AM406670.1	EMBL	CDS	3905102	3906664	.	-	0	ID=cds3555;Parent=gene3619;Dbxref=EnsemblGenomes-Gn:azo3559,EnsemblGenomes-Tr:CAL96175,InterPro:IPR010295,UniProtKB/TrEMBL:A1KBG9,NCBI_GP:CAL96175.1;Name=CAL96175.1;Note=Hypothetical membrane protein. No homology of the whole protein to the data bank. Has PF05987%2C Bacterial protein of unknown function (DUF898)%3BIPR010295 %3B This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative membrane proteins. No signal peptide 6 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL96175.1;transl_table=11
AM406670.1	EMBL	gene	3906932	3907978	.	+	.	ID=gene3620;Name=cobT;gbkey=Gene;gene=cobT;gene_biotype=protein_coding;locus_tag=azo3560
AM406670.1	EMBL	CDS	3906932	3907978	.	+	0	ID=cds3556;Parent=gene3620;Dbxref=EnsemblGenomes-Gn:azo3560,EnsemblGenomes-Tr:CAL96176,GOA:A1KBH0,InterPro:IPR003200,InterPro:IPR017846,InterPro:IPR023195,NCBI_GP:CAL96176.1;Name=CAL96176.1;Note=Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT) (N(1)-alpha-phosphoribosyltransferase). Catalyzes the synthesis of alpha-ribazole-5-phosphate from nicotinate mononucleotide (NAMN) and 56- dimethylbenzimidazole (DMB). InterPro: Phosphoribosyltransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=cobT;product=nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase;protein_id=CAL96176.1;transl_table=11
AM406670.1	EMBL	gene	3907990	3908760	.	+	.	ID=gene3621;Name=cobS;gbkey=Gene;gene=cobS;gene_biotype=protein_coding;locus_tag=azo3561
AM406670.1	EMBL	CDS	3907990	3908760	.	+	0	ID=cds3557;Parent=gene3621;Dbxref=EnsemblGenomes-Gn:azo3561,EnsemblGenomes-Tr:CAL96177,GOA:A1KBH1,InterPro:IPR003805,UniProtKB/TrEMBL:A1KBH1,NCBI_GP:CAL96177.1;Name=CAL96177.1;Note=Cobalamin synthase (EC 2.-.-.-). Joins Ado-cobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin) (By similarity). TIGRFAM: cobS: cobalamin 5-phosphate synthase%3B~High confidence in function and specificity;gbkey=CDS;gene=cobS;product=cobalamin (5'-phosphate) synthase;protein_id=CAL96177.1;transl_table=11
AM406670.1	EMBL	gene	3908745	3909296	.	+	.	ID=gene3622;Name=azo3562;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3562
AM406670.1	EMBL	CDS	3908745	3909296	.	+	0	ID=cds3558;Parent=gene3622;Dbxref=EnsemblGenomes-Gn:azo3562,EnsemblGenomes-Tr:CAL96178,GOA:A1KBH2,InterPro:IPR013078,InterPro:IPR029033,UniProtKB/TrEMBL:A1KBH2,NCBI_GP:CAL96178.1;Name=CAL96178.1;Note=Alpha-ribazole-5-phosphate phosphatase. Converts N1-(5-phospho-alpha-D-ribosyl)-5%2C6-dimethylbenzimidazole into N1-alpha-D-ribosyl-5%2C6-dimethylbenzimidazole%3B involved in the assembly of the nucleotide loop of cobalamin. 27%25 PG/BPGM_mutase. Pfam:PF00300%3B PGAM%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;product=putative alpha-ribazole phosphatase;protein_id=CAL96178.1;transl_table=11
AM406670.1	EMBL	gene	3909437	3910396	.	+	.	ID=gene3623;Name=waaE2;gbkey=Gene;gene=waaE2;gene_biotype=protein_coding;locus_tag=azo3563
AM406670.1	EMBL	CDS	3909437	3910396	.	+	0	ID=cds3559;Parent=gene3623;Dbxref=EnsemblGenomes-Gn:azo3563,EnsemblGenomes-Tr:CAL96179,GOA:A1KBH3,InterPro:IPR011611,InterPro:IPR011913,InterPro:IPR029056,UniProtKB/TrEMBL:A1KBH3,NCBI_GP:CAL96179.1;Name=CAL96179.1;Note=ADP-heptose synthase (EC 2.7.-.-).%3B~High confidence in function and specificity;gbkey=CDS;gene=waaE2;product=ADP-heptose synthase;protein_id=CAL96179.1;transl_table=11
AM406670.1	EMBL	gene	3910439	3911416	.	+	.	ID=gene3624;Name=rfaD;gbkey=Gene;gene=rfaD;gene_biotype=protein_coding;locus_tag=azo3564
AM406670.1	EMBL	CDS	3910439	3911416	.	+	0	ID=cds3560;Parent=gene3624;Dbxref=EnsemblGenomes-Gn:azo3564,EnsemblGenomes-Tr:CAL96180,GOA:A1KBH4,InterPro:IPR001509,InterPro:IPR011912,InterPro:IPR016040,NCBI_GP:CAL96180.1;Name=CAL96180.1;Note=59%25 Epimerase_Dh.IPR000205%3B NAD_BS. Pfam:PF01370%3B Epimerase%3B 1. Non-secretory protein.%3B~High confidence in function and specificity;gbkey=CDS;gene=rfaD;product=putative ADP-L-glycero-D-mannoheptose-6-epimerase;protein_id=CAL96180.1;transl_table=11
AM406670.1	EMBL	gene	3911413	3912468	.	+	.	ID=gene3625;Name=waaF2;gbkey=Gene;gene=waaF2;gene_biotype=protein_coding;locus_tag=azo3565
AM406670.1	EMBL	CDS	3911413	3912468	.	+	0	ID=cds3561;Parent=gene3625;Dbxref=EnsemblGenomes-Gn:azo3565,EnsemblGenomes-Tr:CAL96181,GOA:A1KBH5,InterPro:IPR002201,InterPro:IPR011910,UniProtKB/TrEMBL:A1KBH5,NCBI_GP:CAL96181.1;Name=CAL96181.1;Note=ADP-heptose--LPS heptosyltransferase II (EC 2.-.-.-).%3B~High confidence in function and specificity;gbkey=CDS;gene=waaF2;product=ADP-heptose--LPS heptosyltransferase II;protein_id=CAL96181.1;transl_table=11
AM406670.1	EMBL	gene	3912476	3913567	.	+	.	ID=gene3626;Name=waaC2;gbkey=Gene;gene=waaC2;gene_biotype=protein_coding;locus_tag=azo3566
AM406670.1	EMBL	CDS	3912476	3913567	.	+	0	ID=cds3562;Parent=gene3626;Dbxref=EnsemblGenomes-Gn:azo3566,EnsemblGenomes-Tr:CAL96182,GOA:A1KBH6,InterPro:IPR002201,InterPro:IPR011908,UniProtKB/TrEMBL:A1KBH6,NCBI_GP:CAL96182.1;Name=CAL96182.1;Note=Lipopolysaccharide heptosyltransferase-1 (EC 2.-.-.-). HEPTOSE TRANSFER TO THE LIPOPOLYSACCHARIDE CORE. IT TRANSFERS THE INNNERMOST HEPTOSE TO [4-P](3-DEOXY-D-MANNO-OCTULOSONIC ACID)2-IVA. S18: ribosomal protein S18%3B~High confidence in function and specificity;gbkey=CDS;gene=waaC2;product=lipopolysaccharide heptosyltransferase I;protein_id=CAL96182.1;transl_table=11
AM406670.1	EMBL	gene	3913567	3914700	.	+	.	ID=gene3627;Name=azo3567;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3567
AM406670.1	EMBL	CDS	3913567	3914700	.	+	0	ID=cds3563;Parent=gene3627;Dbxref=EnsemblGenomes-Gn:azo3567,EnsemblGenomes-Tr:CAL96183,GOA:A1KBH7,InterPro:IPR001296,UniProtKB/TrEMBL:A1KBH7,NCBI_GP:CAL96183.1;Name=CAL96183.1;Note=Region start changed from 3913496 to 3913541 (-45 bases);gbkey=CDS;product=glucosyltransferase I;protein_id=CAL96183.1;transl_table=11
AM406670.1	EMBL	gene	3914697	3915533	.	+	.	ID=gene3628;Name=waaP1;gbkey=Gene;gene=waaP1;gene_biotype=protein_coding;locus_tag=azo3568
AM406670.1	EMBL	CDS	3914697	3915533	.	+	0	ID=cds3564;Parent=gene3628;Dbxref=EnsemblGenomes-Gn:azo3568,EnsemblGenomes-Tr:CAL96184,GOA:A1KBH8,InterPro:IPR010440,InterPro:IPR011009,InterPro:IPR017172,UniProtKB/TrEMBL:A1KBH8,NCBI_GP:CAL96184.1;Name=CAL96184.1;Note=Lipopolysaccharide core biosynthesis protein rfaP. Specific function unclear. INVOLVED IN ATTACHMENT OF PHOSPHATE-CONTAINING SUBSTITUENTS TO THE INNER CORE.;gbkey=CDS;gene=waaP1;product=lipopolysaccharide core biosynthesis protein;protein_id=CAL96184.1;transl_table=11
AM406670.1	EMBL	gene	3915530	3916279	.	+	.	ID=gene3629;Name=waaP2;gbkey=Gene;gene=waaP2;gene_biotype=protein_coding;locus_tag=azo3569
AM406670.1	EMBL	CDS	3915530	3916279	.	+	0	ID=cds3565;Parent=gene3629;Dbxref=EnsemblGenomes-Gn:azo3569,EnsemblGenomes-Tr:CAL96185,GOA:A1KBH9,InterPro:IPR010440,InterPro:IPR011009,UniProtKB/TrEMBL:A1KBH9,NCBI_GP:CAL96185.1;Name=CAL96185.1;Note=Lipopolysaccharide core biosynthesis protein rfaP. INVOLVED IN ATTACHMENT OF PHOSPHATE-CONTAINING SUBSTITUENTS TO THE INNER CORE. Specific function unclear.;gbkey=CDS;gene=waaP2;product=lipopolysaccharide core biosynthesis protein;protein_id=CAL96185.1;transl_table=11
AM406670.1	EMBL	gene	3916293	3917066	.	+	.	ID=gene3630;Name=waaP3;gbkey=Gene;gene=waaP3;gene_biotype=protein_coding;locus_tag=azo3570
AM406670.1	EMBL	CDS	3916293	3917066	.	+	0	ID=cds3566;Parent=gene3630;Dbxref=EnsemblGenomes-Gn:azo3570,EnsemblGenomes-Tr:CAL96186,GOA:A1KBI0,InterPro:IPR010440,InterPro:IPR027023,UniProtKB/TrEMBL:A1KBI0,NCBI_GP:CAL96186.1;Name=CAL96186.1;Note=Lipopolysaccharide core biosynthesis protein. INVOLVED IN ATTACHMENT OF PHOSPHATE-CONTAINING SUBSTITUENTS TO THE INNER CORE. Specific function unclear.;gbkey=CDS;gene=waaP3;product=lipopolysaccharide core biosynthesis protein;protein_id=CAL96186.1;transl_table=11
AM406670.1	EMBL	gene	3917063	3918520	.	+	.	ID=gene3631;Name=azo3571;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3571
AM406670.1	EMBL	CDS	3917063	3918520	.	+	0	ID=cds3567;Parent=gene3631;Dbxref=EnsemblGenomes-Gn:azo3571,EnsemblGenomes-Tr:CAL96187,GOA:A1KBI1,InterPro:IPR000719,InterPro:IPR010440,InterPro:IPR011009,UniProtKB/TrEMBL:A1KBI1,NCBI_GP:CAL96187.1;Name=CAL96187.1;Note=InterPro: Eukaryotic protein kinase. Might be related to lipopolysaccharide biosynthesis%2C due to the presence of the gene in a lipopolysaccharide gene cluster.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96187.1;transl_table=11
AM406670.1	EMBL	gene	3918579	3920381	.	-	.	ID=gene3632;Name=msbA2;gbkey=Gene;gene=msbA2;gene_biotype=protein_coding;locus_tag=azo3572
AM406670.1	EMBL	CDS	3918579	3920381	.	-	0	ID=cds3568;Parent=gene3632;Dbxref=EnsemblGenomes-Gn:azo3572,EnsemblGenomes-Tr:CAL96188,GOA:A1KBI2,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR011917,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KBI2,NCBI_GP:CAL96188.1;Name=CAL96188.1;Note=Lipid A export ATP-binding protein msbA. MsbA (TC 3.A.1.106.1) is involved in lipid A and possibly also glycerophospholipids export. The transmembrane domain (TMD) forms a pore in the inner membrane and the ATP-binding domain (NBD) is responible for energy generation. Similar to TREMBL:Q9HUG8%3B TREMBL:Q88D92%3B SWISSPROT:P60752 (39%25 identity). Pfam (PF00005): ABC transporter. Pfam (PF00664): ABC transporter transmembrane region. TMHMM reporting five transmembrane helices. TC (3.A.1.106): The Lipid Exporter (LipidE) Family.%3B~High confidence in function and specificity;gbkey=CDS;gene=msbA2;product=lipid A export ATP-binding/permease protein;protein_id=CAL96188.1;transl_table=11
AM406670.1	EMBL	gene	3920557	3921198	.	+	.	ID=gene3633;Name=azo3573;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3573
AM406670.1	EMBL	CDS	3920557	3921198	.	+	0	ID=cds3569;Parent=gene3633;Dbxref=EnsemblGenomes-Gn:azo3573,EnsemblGenomes-Tr:CAL96189,GOA:A1KBI3,InterPro:IPR002575,InterPro:IPR011009,UniProtKB/TrEMBL:A1KBI3,NCBI_GP:CAL96189.1;Name=CAL96189.1;Note=Conserved hypothetical protein%2C 43%25 identity(65%25 similarity) to TrEMBL|Q9HUG7%2CHypothetical protein PA4998 [PA4998] [Pseudomonas aeruginosa]. Has PF06293:IPR010440:Lipopolysaccharide kinase (Kdo/WaaP) family%3BThese lipopolysaccharide kinases are related to protein kinases Pkinase. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. enterica. No Signal Peptide or TMH reported present.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96189.1;transl_table=11
AM406670.1	EMBL	gene	3921206	3922345	.	-	.	ID=gene3634;Name=azo3574;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3574
AM406670.1	EMBL	CDS	3921206	3922345	.	-	0	ID=cds3570;Parent=gene3634;Dbxref=EnsemblGenomes-Gn:azo3574,EnsemblGenomes-Tr:CAL96190,UniProtKB/TrEMBL:A1KBI4,NCBI_GP:CAL96190.1;Name=CAL96190.1;Note=Hypothetical membrane protein. Homology to pspto4986 of P. syringae of 28%25 (trembl|Q87VF1(SRS)) No domains predicted signal peptide 9 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL96190.1;transl_table=11
AM406670.1	EMBL	gene	3922367	3923167	.	-	.	ID=gene3635;Name=azo3575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3575
AM406670.1	EMBL	CDS	3922367	3923167	.	-	0	ID=cds3571;Parent=gene3635;Dbxref=EnsemblGenomes-Gn:azo3575,EnsemblGenomes-Tr:CAL96191,GOA:A1KBI5,InterPro:IPR007345,UniProtKB/TrEMBL:A1KBI5,NCBI_GP:CAL96191.1;Name=CAL96191.1;Note=Family membership;gbkey=CDS;product=pyruvyltransferase;protein_id=CAL96191.1;transl_table=11
AM406670.1	EMBL	gene	3923220	3924176	.	-	.	ID=gene3636;Name=azo3576;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3576
AM406670.1	EMBL	CDS	3923220	3924176	.	-	0	ID=cds3572;Parent=gene3636;Dbxref=EnsemblGenomes-Gn:azo3576,EnsemblGenomes-Tr:CAL96192,UniProtKB/TrEMBL:A1KBI6,NCBI_GP:CAL96192.1;Name=CAL96192.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96192.1;transl_table=11
AM406670.1	EMBL	gene	3924173	3925075	.	-	.	ID=gene3637;Name=azo3577;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3577
AM406670.1	EMBL	CDS	3924173	3925075	.	-	0	ID=cds3573;Parent=gene3637;Dbxref=EnsemblGenomes-Gn:azo3577,EnsemblGenomes-Tr:CAL96193,UniProtKB/TrEMBL:A1KBI7,NCBI_GP:CAL96193.1;Name=CAL96193.1;Note=Possibly related to cell surface polysaccharide biosynthesis%2C due to the presence of the gene in a polysaccharide synthesis gene cluster.;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96193.1;transl_table=11
AM406670.1	EMBL	gene	3925072	3926202	.	-	.	ID=gene3638;Name=azo3578;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3578
AM406670.1	EMBL	CDS	3925072	3926202	.	-	0	ID=cds3574;Parent=gene3638;Dbxref=EnsemblGenomes-Gn:azo3578,EnsemblGenomes-Tr:CAL96194,GOA:A1KBI8,InterPro:IPR001296,UniProtKB/TrEMBL:A1KBI8,NCBI_GP:CAL96194.1;Name=CAL96194.1;Note=Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL96194.1;transl_table=11
AM406670.1	EMBL	gene	3926195	3927979	.	-	.	ID=gene3639;Name=nolU;gbkey=Gene;gene=nolU;gene_biotype=protein_coding;locus_tag=azo3579
AM406670.1	EMBL	CDS	3926195	3927979	.	-	0	ID=cds3575;Parent=gene3639;Dbxref=EnsemblGenomes-Gn:azo3579,EnsemblGenomes-Tr:CAL96195,GOA:A1KBI9,InterPro:IPR003696,UniProtKB/TrEMBL:A1KBI9,NCBI_GP:CAL96195.1;Name=CAL96195.1;Note=Putative carbamoyltransferase. Homology to nolU of Rhizobium sp. NGR234 of 33%25 InterPro: Carbamoyltransferase Pfam: Carbamoyltransferase no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=nolU;product=putative carbamoyltransferase;protein_id=CAL96195.1;transl_table=11
AM406670.1	EMBL	gene	3928043	3930106	.	-	.	ID=gene3640;Name=azo3580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3580
AM406670.1	EMBL	CDS	3928043	3930106	.	-	0	ID=cds3576;Parent=gene3640;Dbxref=EnsemblGenomes-Gn:azo3580,EnsemblGenomes-Tr:CAL96196,GOA:A1KBJ0,InterPro:IPR002656,UniProtKB/TrEMBL:A1KBJ0,NCBI_GP:CAL96196.1;Name=CAL96196.1;Note=Catalysis of the reactions of the type: acyl-carrier + reactant %3D acyl-reactant + carrier. Entry name : Q888M0 InterPro : IPR002656%3B Acyl_transf_3. Identity: 227/677 (33%25) Pfam PF01757%3B Acyl_transf_3%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.005(almost Yes) Number of predicted TMHs: 10%3B~Family membership;gbkey=CDS;product=putative acyltransferase family protein;protein_id=CAL96196.1;transl_table=11
AM406670.1	EMBL	gene	3930274	3932139	.	-	.	ID=gene3641;Name=capD;gbkey=Gene;gene=capD;gene_biotype=protein_coding;locus_tag=azo3581
AM406670.1	EMBL	CDS	3930274	3932139	.	-	0	ID=cds3577;Parent=gene3641;Dbxref=EnsemblGenomes-Gn:azo3581,EnsemblGenomes-Tr:CAL96197,GOA:A1KBJ1,InterPro:IPR003869,InterPro:IPR016040,UniProtKB/TrEMBL:A1KBJ1,NCBI_GP:CAL96197.1;Name=CAL96197.1;Note=48%25 Polysac_CapD. Pfam:PF02719%3B Polysacc_synt_2%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=capD;product=putative capsular polysaccharide biosynthesis protein;protein_id=CAL96197.1;transl_table=11
AM406670.1	EMBL	gene	3932553	3933590	.	-	.	ID=gene3642;Name=azo3582;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3582
AM406670.1	EMBL	CDS	3932553	3933590	.	-	0	ID=cds3578;Parent=gene3642;Dbxref=EnsemblGenomes-Gn:azo3582,EnsemblGenomes-Tr:CAL96198,GOA:A1KBJ2,InterPro:IPR000715,UniProtKB/TrEMBL:A1KBJ2,NCBI_GP:CAL96198.1;Name=CAL96198.1;Note=Similar to proteins annotated as phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) (UDP- MurNAc-pentapeptide phosphotransferase). First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (By similarity).%3B~Function unclear;gbkey=CDS;product=membrane protein involved in cell envelope biogenesis;protein_id=CAL96198.1;transl_table=11
AM406670.1	EMBL	gene	3933587	3934570	.	-	.	ID=gene3643;Name=wbpV;gbkey=Gene;gene=wbpV;gene_biotype=protein_coding;locus_tag=azo3583
AM406670.1	EMBL	CDS	3933587	3934570	.	-	0	ID=cds3579;Parent=gene3643;Dbxref=EnsemblGenomes-Gn:azo3583,EnsemblGenomes-Tr:CAL96199,GOA:A1KBJ3,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:A1KBJ3,NCBI_GP:CAL96199.1;Name=CAL96199.1;Note=50%25%3B~High confidence in function and specificity;gbkey=CDS;gene=wbpV;product=putative UDP-glucose 4-epimerase;protein_id=CAL96199.1;transl_table=11
AM406670.1	EMBL	gene	3934567	3935748	.	-	.	ID=gene3644;Name=azo3584;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3584
AM406670.1	EMBL	CDS	3934567	3935748	.	-	0	ID=cds3580;Parent=gene3644;Dbxref=EnsemblGenomes-Gn:azo3584,EnsemblGenomes-Tr:CAL96200,GOA:A1KBJ4,InterPro:IPR001296,InterPro:IPR028098,UniProtKB/TrEMBL:A1KBJ4,NCBI_GP:CAL96200.1;Name=CAL96200.1;Note=InterPro: Glycosyl transferases group 1%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL96200.1;transl_table=11
AM406670.1	EMBL	gene	3935717	3936460	.	-	.	ID=gene3645;Name=azo3585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3585
AM406670.1	EMBL	CDS	3935717	3936460	.	-	0	ID=cds3581;Parent=gene3645;Dbxref=EnsemblGenomes-Gn:azo3585,EnsemblGenomes-Tr:CAL96201,GOA:A1KBJ5,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:A1KBJ5,NCBI_GP:CAL96201.1;Name=CAL96201.1;Note=Putative glycosyl transferase MJ1057 (EC 2.-.-.-). InterPro: Glycosyl transferase family 2%3B~Family membership;gbkey=CDS;product=glycosyltransferase;protein_id=CAL96201.1;transl_table=11
AM406670.1	EMBL	gene	3936457	3937452	.	-	.	ID=gene3646;Name=fcl1;gbkey=Gene;gene=fcl1;gene_biotype=protein_coding;locus_tag=azo3586
AM406670.1	EMBL	CDS	3936457	3937452	.	-	0	ID=cds3582;Parent=gene3646;Dbxref=EnsemblGenomes-Gn:azo3586,EnsemblGenomes-Tr:CAL96202,GOA:A1KBJ6,InterPro:IPR001509,InterPro:IPR016040,InterPro:IPR028614,UniProtKB/TrEMBL:A1KBJ6,NCBI_GP:CAL96202.1;Name=CAL96202.1;Note=GDP-L-fucose synthetase (GDP-4-keto-6-deoxy-D-mannose-35-epimerase -4-reductase). Two step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose involving an epimerase and a reductase reaction.54%25 ADH_short.IPR001509%3B Epimerase_Dh. Pfam:PF01370%3B Epimerase. Non-secretory protein.%3B~High confidence in function and specificity;gbkey=CDS;gene=fcl1;product=putative GDP-fucose synthetase;protein_id=CAL96202.1;transl_table=11
AM406670.1	EMBL	gene	3937403	3938488	.	-	.	ID=gene3647;Name=gmd;gbkey=Gene;gene=gmd;gene_biotype=protein_coding;locus_tag=azo3587
AM406670.1	EMBL	CDS	3937403	3938488	.	-	0	ID=cds3583;Parent=gene3647;Dbxref=EnsemblGenomes-Gn:azo3587,EnsemblGenomes-Tr:CAL96203,GOA:A1KBJ7,InterPro:IPR001509,InterPro:IPR006368,InterPro:IPR016040,UniProtKB/TrEMBL:A1KBJ7,NCBI_GP:CAL96203.1;Name=CAL96203.1;Note=[EC:4.2.1.47] %2C GDP-mannose 4%2C6-dehydratase (EC 4.2.1.47) (GDP-D-mannose dehydratase).%2C GDP-mannose 4%2C6-dehydratase%2C NAD dependent epimerase/dehydratase family%2Cgmd: GDP-mannose 4%2C6-dehydratase%3B~High confidence in function and specificity;gbkey=CDS;gene=gmd;product=GDP-mannose 4%2C6-dehydratase;protein_id=CAL96203.1;transl_table=11
AM406670.1	EMBL	gene	3938557	3940620	.	-	.	ID=gene3648;Name=azo3588;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3588
AM406670.1	EMBL	CDS	3938557	3940620	.	-	0	ID=cds3584;Parent=gene3648;Dbxref=EnsemblGenomes-Gn:azo3588,EnsemblGenomes-Tr:CAL96204,UniProtKB/TrEMBL:A1KBJ8,NCBI_GP:CAL96204.1;Name=CAL96204.1;Note=Hypothetical membrane protein. No homology to the data bank. No domains predicted. no signal peptide. 9 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL96204.1;transl_table=11
AM406670.1	EMBL	gene	3940575	3941408	.	-	.	ID=gene3649;Name=azo3589;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3589
AM406670.1	EMBL	CDS	3940575	3941408	.	-	0	ID=cds3585;Parent=gene3649;Dbxref=EnsemblGenomes-Gn:azo3589,EnsemblGenomes-Tr:CAL96205,GOA:A1KBJ9,InterPro:IPR029044,UniProtKB/TrEMBL:A1KBJ9,NCBI_GP:CAL96205.1;Name=CAL96205.1;Note=InterPro: Glycosyl transferase family 2. Slight similarity to dolicholphosphate mannosyltransferases%2Cmight therefore transfer a sugar moiety directly to a lipid carrier.%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL96205.1;transl_table=11
AM406670.1	EMBL	gene	3941422	3941778	.	-	.	ID=gene3650;Name=emrE;gbkey=Gene;gene=emrE;gene_biotype=protein_coding;locus_tag=azo3590
AM406670.1	EMBL	CDS	3941422	3941778	.	-	0	ID=cds3586;Parent=gene3650;Dbxref=EnsemblGenomes-Gn:azo3590,EnsemblGenomes-Tr:CAL96206,GOA:A1KBK0,InterPro:IPR000390,UniProtKB/TrEMBL:A1KBK0,NCBI_GP:CAL96206.1;Name=CAL96206.1;Note=Low similarity with the EmrE protein (Methyl viologen resistance protein C)(Ethidium resistance protein)in E.coli. Multidrug transporter. Confers resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. Probably prevents the incorporation of methyl viologen into cells. Involved in ethidium bromide efflux. EMRE_ECOLI:P23895. InterPro:IPR000390%3B Smr. Pfam: PF00893%3B Multi_Drug_Res%3B 1. Signal peptide present. TMHelix: 4.%3B~High confidence in function and specificity;gbkey=CDS;gene=emrE;product=hypothetical multidrug efflux transporter protein;protein_id=CAL96206.1;transl_table=11
AM406670.1	EMBL	gene	3941775	3942605	.	-	.	ID=gene3651;Name=azo3591;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3591
AM406670.1	EMBL	CDS	3941775	3942605	.	-	0	ID=cds3587;Parent=gene3651;Dbxref=EnsemblGenomes-Gn:azo3591,EnsemblGenomes-Tr:CAL96207,InterPro:IPR013022,UniProtKB/TrEMBL:A1KBK1,NCBI_GP:CAL96207.1;Name=CAL96207.1;Note=Family membership;gbkey=CDS;product=sugar or sugar nucleotide oxidoreductase;protein_id=CAL96207.1;transl_table=11
AM406670.1	EMBL	gene	3942602	3943387	.	-	.	ID=gene3652;Name=azo3592;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3592
AM406670.1	EMBL	CDS	3942602	3943387	.	-	0	ID=cds3588;Parent=gene3652;Dbxref=EnsemblGenomes-Gn:azo3592,EnsemblGenomes-Tr:CAL96208,InterPro:IPR016040,UniProtKB/TrEMBL:A1KBK2,NCBI_GP:CAL96208.1;Name=CAL96208.1;Note=Gene located in a gene cluster related to an unidentified cell surface polysaccharide;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96208.1;transl_table=11
AM406670.1	EMBL	gene	3943384	3944523	.	-	.	ID=gene3653;Name=azo3593;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3593
AM406670.1	EMBL	CDS	3943384	3944523	.	-	0	ID=cds3589;Parent=gene3653;Dbxref=EnsemblGenomes-Gn:azo3593,EnsemblGenomes-Tr:CAL96209,GOA:A1KBK3,InterPro:IPR006076,UniProtKB/TrEMBL:A1KBK3,NCBI_GP:CAL96209.1;Name=CAL96209.1;Note=Hypothetical membrane protein. No good homology of the entire protein with the data bank. No domains predicted. No signal peptide. 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL96209.1;transl_table=11
AM406670.1	EMBL	gene	3944541	3945566	.	-	.	ID=gene3654;Name=azo3594;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3594
AM406670.1	EMBL	CDS	3944541	3945566	.	-	0	ID=cds3590;Parent=gene3654;Dbxref=EnsemblGenomes-Gn:azo3594,EnsemblGenomes-Tr:CAL96210,GOA:A1KBK4,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:A1KBK4,NCBI_GP:CAL96210.1;Name=CAL96210.1;Note=Putative glycosyl transferase sll0501 (EC 2.-.-.-).%3B~Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL96210.1;transl_table=11
AM406670.1	EMBL	gene	3945793	3948288	.	-	.	ID=gene3655;Name=azo3595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3595
AM406670.1	EMBL	CDS	3945793	3948288	.	-	0	ID=cds3591;Parent=gene3655;Dbxref=EnsemblGenomes-Gn:azo3595,EnsemblGenomes-Tr:CAL96211,GOA:A1KBK5,InterPro:IPR011990,InterPro:IPR013216,InterPro:IPR025714,InterPro:IPR029063,UniProtKB/TrEMBL:A1KBK5,NCBI_GP:CAL96211.1;Name=CAL96211.1;gbkey=CDS;product=Hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96211.1;transl_table=11
AM406670.1	EMBL	gene	3948285	3949694	.	-	.	ID=gene3656;Name=wzt;gbkey=Gene;gene=wzt;gene_biotype=protein_coding;locus_tag=azo3596
AM406670.1	EMBL	CDS	3948285	3949694	.	-	0	ID=cds3592;Parent=gene3656;Dbxref=EnsemblGenomes-Gn:azo3596,EnsemblGenomes-Tr:CAL96212,GOA:A1KBK6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,InterPro:IPR029439,UniProtKB/TrEMBL:A1KBK6,NCBI_GP:CAL96212.1;Name=CAL96212.1;Note=44%25 AAA_ATPase.IPR003439%3B ABC_transporter. Pfam:PF00005%3B ABC_tran%3B 1. ProDom:PD000006%3B ABC_transporter%3B 1. SMART:SM00382%3B AAA%3B 1.;gbkey=CDS;gene=wzt;product=putative polysaccharide export transport system ATP-binding protein;protein_id=CAL96212.1;transl_table=11
AM406670.1	EMBL	gene	3949684	3950472	.	-	.	ID=gene3657;Name=wzm;gbkey=Gene;gene=wzm;gene_biotype=protein_coding;locus_tag=azo3597
AM406670.1	EMBL	CDS	3949684	3950472	.	-	0	ID=cds3593;Parent=gene3657;Dbxref=EnsemblGenomes-Gn:azo3597,EnsemblGenomes-Tr:CAL96213,GOA:A1KBK7,InterPro:IPR000412,InterPro:IPR013525,UniProtKB/TrEMBL:A1KBK7,NCBI_GP:CAL96213.1;Name=CAL96213.1;Note=51%25 ABC_transpt2. Pfam:PF01061%3B ABC2_membrane%3B 1. TMhelix:6. Non-secretory protein.%3B~Specificity unclear;gbkey=CDS;gene=wzm;product=putative permease component of an ABC polysaccharide exporter;protein_id=CAL96213.1;transl_table=11
AM406670.1	EMBL	gene	3950578	3952557	.	-	.	ID=gene3658;Name=azo3598;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3598
AM406670.1	EMBL	CDS	3950578	3952557	.	-	0	ID=cds3594;Parent=gene3658;Dbxref=EnsemblGenomes-Gn:azo3598,EnsemblGenomes-Tr:CAL96214,UniProtKB/TrEMBL:A1KBK8,NCBI_GP:CAL96214.1;Name=CAL96214.1;Note=Possibly related to cell surface biosynthesis%2C ue to the location of he gene in a polysaccharide synthesis gene cluster.;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96214.1;transl_table=11
AM406670.1	EMBL	gene	3952636	3953631	.	-	.	ID=gene3659;Name=fcl2;gbkey=Gene;gene=fcl2;gene_biotype=protein_coding;locus_tag=azo3599
AM406670.1	EMBL	CDS	3952636	3953631	.	-	0	ID=cds3595;Parent=gene3659;Dbxref=EnsemblGenomes-Gn:azo3599,EnsemblGenomes-Tr:CAL96215,GOA:A1KBK9,InterPro:IPR001509,InterPro:IPR016040,InterPro:IPR028614,UniProtKB/TrEMBL:A1KBK9,NCBI_GP:CAL96215.1;Name=CAL96215.1;Note=49%25%3B~High confidence in function and specificity;gbkey=CDS;gene=fcl2;product=putative GDP-fucose synthetase;protein_id=CAL96215.1;transl_table=11
AM406670.1	EMBL	gene	3953917	3956673	.	-	.	ID=gene3660;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;locus_tag=azo3600
AM406670.1	EMBL	CDS	3953917	3956673	.	-	0	ID=cds3596;Parent=gene3660;Dbxref=EnsemblGenomes-Gn:azo3600,EnsemblGenomes-Tr:CAL96216,GOA:A1KBL0,InterPro:IPR001098,InterPro:IPR002298,InterPro:IPR002421,InterPro:IPR002562,InterPro:IPR008918,InterPro:IPR012337,InterPro:IPR018320,InterPro:IPR019760,InterPro:IPR020045,InterPro:IPR020046,InterPro:IPR029060,UniProtKB/TrEMBL:A1KBL0,NCBI_GP:CAL96216.1;Name=CAL96216.1;Note=DNA polymerase I (EC 2.7.7.7) (POL I). IN ADDITION TO POLYMERASE ACTIVITY THIS DNA POLYMERASE EXHIBITS 3 TO 5 AND 5 TO 3 EXONUCLEASE ACTIVITY. IT IS ABLE TO UTILIZE NICKED CIRCULAR DUPLEX DNA AS A TEMPLATE AND CAN UNWIND THE PARENTAL DNA STRAND FROM ITS TEMPLATE. InterPro: Replicative DNA polymerase%3B~High confidence in function and specificity;gbkey=CDS;gene=polA;product=DNA polymerase I;protein_id=CAL96216.1;transl_table=11
AM406670.1	EMBL	gene	3956755	3957477	.	+	.	ID=gene3661;Name=azo3601;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3601
AM406670.1	EMBL	CDS	3956755	3957477	.	+	0	ID=cds3597;Parent=gene3661;Dbxref=EnsemblGenomes-Gn:azo3601,EnsemblGenomes-Tr:CAL96217,InterPro:IPR005269,UniProtKB/TrEMBL:A1KBL1,NCBI_GP:CAL96217.1;Name=CAL96217.1;Note=Hypothetical protein PA4923. TREMBL:Q82UL5: 68%25 identity%2C 82%25 similarity InterPro:IPR005269%3B Cons_hypoth730. Pfam:PF03641%3B Lysine_decarbox%3B 1. TIGRFAMs:TIGR00730%3B Cons_hypoth730 bcl-2: Apoptosis regulator Non-secretory protein with signal peptide probability 0(Signal P predicted9 Absence of transmembrane helices (TMHHH predicted)%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96217.1;transl_table=11
AM406670.1	EMBL	gene	3957597	3957920	.	+	.	ID=gene3662;Name=azo3602;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3602
AM406670.1	EMBL	CDS	3957597	3957920	.	+	0	ID=cds3598;Parent=gene3662;Dbxref=EnsemblGenomes-Gn:azo3602,EnsemblGenomes-Tr:CAL96218,InterPro:IPR021357,UniProtKB/TrEMBL:A1KBL2,NCBI_GP:CAL96218.1;Name=CAL96218.1;Note=Conserved hypothetical secreted protein. Homology to CV0777 of C.violaceum of 42%25 (trembl|Q7NZZ2(SRS)). No domains predicted. Signal peptide present. No TMH reported.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96218.1;transl_table=11
AM406670.1	EMBL	gene	3957899	3958459	.	+	.	ID=gene3663;Name=azo3603;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3603
AM406670.1	EMBL	CDS	3957899	3958459	.	+	0	ID=cds3599;Parent=gene3663;Dbxref=EnsemblGenomes-Gn:azo3603,EnsemblGenomes-Tr:CAL96219,InterPro:IPR005122,InterPro:IPR026353,UniProtKB/TrEMBL:A1KBL3,NCBI_GP:CAL96219.1;Name=CAL96219.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96219.1;transl_table=11
AM406670.1	EMBL	gene	3958480	3959433	.	+	.	ID=gene3664;Name=thrB;gbkey=Gene;gene=thrB;gene_biotype=protein_coding;locus_tag=azo3604
AM406670.1	EMBL	CDS	3958480	3959433	.	+	0	ID=cds3600;Parent=gene3664;Dbxref=EnsemblGenomes-Gn:azo3604,EnsemblGenomes-Tr:CAL96220,GOA:A1KBL4,InterPro:IPR002575,InterPro:IPR005280,InterPro:IPR011009,UniProtKB/TrEMBL:A1KBL4,NCBI_GP:CAL96220.1;Name=CAL96220.1;Note=Probable homoserine kinase. Homology to thrB of M. flagellum of 51%25 (sprot|KHSE_METFL). CATALYTIC ACTIVITY: ATP + L-homoserine %3D ADP + O-phospho-L-homoserine. Pfam: Aminoglycoside phosphotransferase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=thrB;product=probable homoserine kinase;protein_id=CAL96220.1;transl_table=11
AM406670.1	EMBL	gene	3959528	3960298	.	+	.	ID=gene3665;Name=azo3605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3605
AM406670.1	EMBL	CDS	3959528	3960298	.	+	0	ID=cds3601;Parent=gene3665;Dbxref=EnsemblGenomes-Gn:azo3605,EnsemblGenomes-Tr:CAL96221,UniProtKB/TrEMBL:A1KBL5,NCBI_GP:CAL96221.1;Name=CAL96221.1;Note=Conserved hypothetical membrane protein. Homology to cv0192 of C. violaceum of 32%25 (trembl|Q7P1M1(SRS)). No domains predicted. No signal peptide. 6 TMHs.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96221.1;transl_table=11
AM406670.1	EMBL	gene	3960306	3961076	.	+	.	ID=gene3666;Name=azo3606;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3606
AM406670.1	EMBL	CDS	3960306	3961076	.	+	0	ID=cds3602;Parent=gene3666;Dbxref=EnsemblGenomes-Gn:azo3606,EnsemblGenomes-Tr:CAL96222,UniProtKB/TrEMBL:A1KBL6,NCBI_GP:CAL96222.1;Name=CAL96222.1;Note=Conserved hypothetical protein. Homology to ne1472 of N. europaea of 33%25 (trembl|Q82UL2(SRS)). No domains predicted. No signal peptide. 6 TMHs.;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96222.1;transl_table=11
AM406670.1	EMBL	gene	3961057	3961740	.	+	.	ID=gene3667;Name=nadD;gbkey=Gene;gene=nadD;gene_biotype=protein_coding;locus_tag=azo3607
AM406670.1	EMBL	CDS	3961057	3961740	.	+	0	ID=cds3603;Parent=gene3667;Dbxref=EnsemblGenomes-Gn:azo3607,EnsemblGenomes-Tr:CAL96223,GOA:A1KBL7,InterPro:IPR004821,InterPro:IPR005248,InterPro:IPR014729,UniProtKB/TrEMBL:A1KBL7,NCBI_GP:CAL96223.1;Name=CAL96223.1;Note=Probable nicotinate-nucleotide adenylyltransferase (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase). Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) (By similarity). InterPro: Cytidylyltransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=nadD;product=Nicotinate-nucleotide adenylyltransferase;protein_id=CAL96223.1;transl_table=11
AM406670.1	EMBL	gene	3961760	3962125	.	+	.	ID=gene3668;Name=azo3608;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3608
AM406670.1	EMBL	CDS	3961760	3962125	.	+	0	ID=cds3604;Parent=gene3668;Dbxref=EnsemblGenomes-Gn:azo3608,EnsemblGenomes-Tr:CAL96224,GOA:A1KBL8,InterPro:IPR004394,InterPro:IPR025656,UniProtKB/TrEMBL:A1KBL8,NCBI_GP:CAL96224.1;Name=CAL96224.1;Note=Conserved hypothetical protein. Homology to NE0358 of Nitrosomonas europaea of 55%25 (trembl:Q82XC6). Pfam:Domain of unknown function DUF143. This domain has no known function nor do any of the proteins that possess it. The aligned region is approximately 100 amino acids long. Tigrfam: TIGR00090 iojap-related protein. This model describes a strictly bacterial family of proteins related to iojap from plants. The gene iojap is a pattern-striping gene in maize%2C reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids%2Cbut the plastid-encoded one;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96224.1;transl_table=11
AM406670.1	EMBL	gene	3962122	3962592	.	+	.	ID=gene3669;Name=azo3609;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3609
AM406670.1	EMBL	CDS	3962122	3962592	.	+	0	ID=cds3605;Parent=gene3669;Dbxref=EnsemblGenomes-Gn:azo3609,EnsemblGenomes-Tr:CAL96225,GOA:A1KBL9,InterPro:IPR003742,InterPro:IPR029026,InterPro:IPR029028,NCBI_GP:CAL96225.1;Name=CAL96225.1;Note=Conserved hypothetical protein. Homology to BP2313 of B.pertussis of 61%25 (trembl:Q7VWE4) Has PF02590%2CUncharacterized ACR%2C COG1576%3BIPR003742%2CDUF163%3BFamily of uncharacterized proteins of unknown function. Signal peptide or TMH not present.;gbkey=CDS;product=putative secreted protein;protein_id=CAL96225.1;transl_table=11
AM406670.1	EMBL	gene	3962595	3963128	.	+	.	ID=gene3670;Name=def2;gbkey=Gene;gene=def2;gene_biotype=protein_coding;locus_tag=azo3610
AM406670.1	EMBL	CDS	3962595	3963128	.	+	0	ID=cds3606;Parent=gene3670;Dbxref=EnsemblGenomes-Gn:azo3610,EnsemblGenomes-Tr:CAL96226,GOA:A1KBM0,InterPro:IPR000181,InterPro:IPR023635,UniProtKB/TrEMBL:A1KBM0,NCBI_GP:CAL96226.1;Name=CAL96226.1;Note=Probable peptide deformylase (EC 3.5.1.88). Homology to def of E. coli of 42%25 (sprot|DEF_ECOLI(SRS)). Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions Interpro: Formylmethionine deformylase (IPR000181) Pfam: Polypeptide deformylase Tigrfam: pept_deformyl: polypeptide deformylase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=def2;product=probable peptide deformylase;protein_id=CAL96226.1;transl_table=11
AM406670.1	EMBL	gene	3963195	3963815	.	+	.	ID=gene3671;Name=azo3611;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3611
AM406670.1	EMBL	CDS	3963195	3963815	.	+	0	ID=cds3607;Parent=gene3671;Dbxref=EnsemblGenomes-Gn:azo3611,EnsemblGenomes-Tr:CAL96227,GOA:A1KBM1,InterPro:IPR003697,InterPro:IPR029001,UniProtKB/TrEMBL:A1KBM1,NCBI_GP:CAL96227.1;Name=CAL96227.1;Note=Homology to Maf-like proteins%3B~Family membership;gbkey=CDS;product=Maf-like protein;protein_id=CAL96227.1;transl_table=11
AM406670.1	EMBL	gene	3963871	3965382	.	+	.	ID=gene3672;Name=cafA;gbkey=Gene;gene=cafA;gene_biotype=protein_coding;locus_tag=azo3612
AM406670.1	EMBL	CDS	3963871	3965382	.	+	0	ID=cds3608;Parent=gene3672;Dbxref=EnsemblGenomes-Gn:azo3612,EnsemblGenomes-Tr:CAL96228,GOA:A1KBM2,InterPro:IPR003029,InterPro:IPR004659,InterPro:IPR012340,InterPro:IPR019307,InterPro:IPR022967,UniProtKB/TrEMBL:A1KBM2,NCBI_GP:CAL96228.1;Name=CAL96228.1;Note=Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial filament protein). INVOLVED IN PROCESSING OF THE 5END OF 16S RRNA. COULD BE INVOLVED IN CHROMOSOME SEGREGATION AND CELL DIVISION. IT MAY BE ONE OF THE COMPONENTS OF THE CYTOPLASMIC AXIAL FILAMENTS BUNDLES OR MERELY REGULATE THE FORMATION OF THIS STRUCTURE.%3B~Family membership;gbkey=CDS;gene=cafA;product=putative ribonuclease;protein_id=CAL96228.1;transl_table=11
AM406670.1	EMBL	gene	3965391	3966347	.	+	.	ID=gene3673;Name=menA;gbkey=Gene;gene=menA;gene_biotype=protein_coding;locus_tag=azo3613
AM406670.1	EMBL	CDS	3965391	3966347	.	+	0	ID=cds3609;Parent=gene3673;Dbxref=EnsemblGenomes-Gn:azo3613,EnsemblGenomes-Tr:CAL96229,GOA:A1KBM3,InterPro:IPR000537,InterPro:IPR026046,UniProtKB/TrEMBL:A1KBM3,NCBI_GP:CAL96229.1;Name=CAL96229.1;Note=Probable 14-dihydroxy-2-naphthoate octaprenyltransferase (EC 2.5.1.-) (DHNA-octaprenyltransferase). CONVERSION OF 1%2C4-DIHYDROXY-2-NAPHTHOATE (DHNA) TO DIMETHYLMENAQUINONE (DMK). ATTACHES OCTAPRENYLPYROPHOSPHATE A MEMBRANE-BOUND 40-CARBON SIDE CHAIN TO DHNA. THE CONVERSION OF DHNA TO DMK PROCEEDS IN THREE STAGES: THE REMOVAL OF THE CARBOXYL GROUP OF DHNA AS CO2 THE ATTACHMENT OF THE ISOPRENOID SIDE CHAIN AND A QUINOL-TO-QUINONE OXIDATION WHICH IS THOUGHT TO BE SPONTANEOUS (BY SIMILARITY). TIGRFAM: menA: 14-dihydroxy-2-naphthoate octaprenyltransferase%3B~Specificity unclear;gbkey=CDS;gene=menA;product=1%2C4-dihydroxy-2-naphthoate octaprenyltransferase;protein_id=CAL96229.1;transl_table=11
AM406670.1	EMBL	gene	3966362	3966727	.	-	.	ID=gene3674;Name=azo3614;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3614
AM406670.1	EMBL	CDS	3966362	3966727	.	-	0	ID=cds3610;Parent=gene3674;Dbxref=EnsemblGenomes-Gn:azo3614,EnsemblGenomes-Tr:CAL96230,UniProtKB/TrEMBL:A1KBM4,NCBI_GP:CAL96230.1;Name=CAL96230.1;Note=Conserved hypothetical membrane protein. Homology to PA0359 of Pseudomonas aeruginosa of 35%25 (trembl|Q9I6D5(SRS)). No domains predicted. signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96230.1;transl_table=11
AM406670.1	EMBL	gene	3966875	3967591	.	+	.	ID=gene3675;Name=ompR3;gbkey=Gene;gene=ompR3;gene_biotype=protein_coding;locus_tag=azo3615
AM406670.1	EMBL	CDS	3966875	3967591	.	+	0	ID=cds3611;Parent=gene3675;Dbxref=EnsemblGenomes-Gn:azo3615,EnsemblGenomes-Tr:CAL96231,GOA:A1KBM5,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:A1KBM5,NCBI_GP:CAL96231.1;Name=CAL96231.1;Note=Transcriptional regulatory protein%2C Trans_reg_C. IPR001789 Response_reg. Pfam: PF00486%3B trans_reg_C. PF00072 response_reg. SMART: SM00448 REC.%3B~Specificity unclear;gbkey=CDS;gene=ompR3;product=DNA-binding response regulator;protein_id=CAL96231.1;transl_table=11
AM406670.1	EMBL	gene	3967591	3968691	.	+	.	ID=gene3676;Name=envZ3;gbkey=Gene;gene=envZ3;gene_biotype=protein_coding;locus_tag=azo3616
AM406670.1	EMBL	CDS	3967591	3968691	.	+	0	ID=cds3612;Parent=gene3676;Dbxref=EnsemblGenomes-Gn:azo3616,EnsemblGenomes-Tr:CAL96232,GOA:A1KBM6,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1KBM6,NCBI_GP:CAL96232.1;Name=CAL96232.1;Note=Putative sensor histidine kinase%2C ATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR005467%3B His_kinase. IPR003661%3B His_kinA_N. IPR009082%3B His_kin_homodim. IPR003660%3B HAMP. Pfam: PF02518%3B HATPase_c. PF00512%3B HisKA. PF00672%3B HAMP. SMART: SM00387%3B HATPase_c. SM00388%3B HisKA. SM00304%3B HAMP. TMHMM reporting 2 transmembrane helices.%3B~Specificity unclear;gbkey=CDS;gene=envZ3;product=putative sensor histidine kinase;protein_id=CAL96232.1;transl_table=11
AM406670.1	EMBL	gene	3968809	3969477	.	+	.	ID=gene3677;Name=azo3617;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3617
AM406670.1	EMBL	CDS	3968809	3969477	.	+	0	ID=cds3613;Parent=gene3677;Dbxref=EnsemblGenomes-Gn:azo3617,EnsemblGenomes-Tr:CAL96233,GOA:A1KBM7,InterPro:IPR002048,InterPro:IPR011992,InterPro:IPR018247,UniProtKB/TrEMBL:A1KBM7,NCBI_GP:CAL96233.1;Name=CAL96233.1;Note=Putative calcium binding protein%2C40%25 similarity to TrEMBL%3BO22845. Has 3 EFh|EF-hand%2C calcium binding motif%3B(SMART|SM00054):Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both side by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1%2C 3%2C 5%2C 7%2C 9 and 12%3B these residues are denoted by X%2C Y%2C Z%2C -Y%2C -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand). NO Signal peptide or TMh reported present.%3B~Family membership;gbkey=CDS;product=putative calcium binding protein;protein_id=CAL96233.1;transl_table=11
AM406670.1	EMBL	gene	3969509	3970477	.	-	.	ID=gene3678;Name=gcvA;gbkey=Gene;gene=gcvA;gene_biotype=protein_coding;locus_tag=azo3618
AM406670.1	EMBL	CDS	3969509	3970477	.	-	0	ID=cds3614;Parent=gene3678;Dbxref=EnsemblGenomes-Gn:azo3618,EnsemblGenomes-Tr:CAL96234,GOA:A1KBM8,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1KBM8,NCBI_GP:CAL96234.1;Name=CAL96234.1;Note=Glycine cleavage system transcriptional activator (Gcv operon activator). Regulatory protein for the glycine cleavage system operon (gcv). Mediates activation og gcv by glycine and repression by purines. GcvA is negatively autoregulated. Bind to three sites upstream of the gcv promoter. Similar to SWISSPROT: sprot|GCVA_ECOLI (39%25 Escherichia coli%2C glycine cleavage system transcriptional activator (gcv operon activator)) InterPro: IPR000847 HTH_LysR. IPR009058 Winged helix DNA-binding. Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2ClysR family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=gcvA;product=glycine cleavage system transcriptional activator;protein_id=CAL96234.1;transl_table=11
AM406670.1	EMBL	gene	3970592	3970765	.	+	.	ID=gene3679;Name=azo3619;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3619
AM406670.1	EMBL	CDS	3970592	3970765	.	+	0	ID=cds3615;Parent=gene3679;Dbxref=EnsemblGenomes-Gn:azo3619,EnsemblGenomes-Tr:CAL96235,UniProtKB/TrEMBL:A1KBM9,NCBI_GP:CAL96235.1;Name=CAL96235.1;Note=Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96235.1;transl_table=11
AM406670.1	EMBL	gene	3970934	3971842	.	-	.	ID=gene3680;Name=azo3620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3620
AM406670.1	EMBL	CDS	3970934	3971842	.	-	0	ID=cds3616;Parent=gene3680;Dbxref=EnsemblGenomes-Gn:azo3620,EnsemblGenomes-Tr:CAL96236,GOA:A1KBN0,InterPro:IPR000253,InterPro:IPR001054,InterPro:IPR008984,InterPro:IPR029787,UniProtKB/TrEMBL:A1KBN0,NCBI_GP:CAL96236.1;Name=CAL96236.1;Note=Putative adenylate/ guanylate cyclase%2C%3B~Function unclear;gbkey=CDS;product=putative adenylate/guanylate cyclase;protein_id=CAL96236.1;transl_table=11
AM406670.1	EMBL	gene	3971984	3972556	.	-	.	ID=gene3681;Name=tag;gbkey=Gene;gene=tag;gene_biotype=protein_coding;locus_tag=azo3621
AM406670.1	EMBL	CDS	3971984	3972556	.	-	0	ID=cds3617;Parent=gene3681;Dbxref=EnsemblGenomes-Gn:azo3621,EnsemblGenomes-Tr:CAL96237,GOA:A1KBN1,InterPro:IPR004597,InterPro:IPR005019,InterPro:IPR011257,UniProtKB/TrEMBL:A1KBN1,NCBI_GP:CAL96237.1;Name=CAL96237.1;Note=DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I constitutive) (TAG I) . HYDROLYSIS OF THE DEOXYRIBOSE N-GLYCOSIDIC BOND TO EXCISE 3-METHYLADENINE FROM THE DAMAGED DNA POLYMER FORMED BY ALKYLATION LESIONS. InterPro: DNA-3-methyladenine glycosylase I%3B~High confidence in function and specificity;gbkey=CDS;gene=tag;product=DNA-3-methyladenine glycosidase I;protein_id=CAL96237.1;transl_table=11
AM406670.1	EMBL	gene	3972582	3973490	.	-	.	ID=gene3682;Name=ptxR;gbkey=Gene;gene=ptxR;gene_biotype=protein_coding;locus_tag=azo3622
AM406670.1	EMBL	CDS	3972582	3973490	.	-	0	ID=cds3618;Parent=gene3682;Dbxref=EnsemblGenomes-Gn:azo3622,EnsemblGenomes-Tr:CAL96238,GOA:A1KBN2,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1KBN2,NCBI_GP:CAL96238.1;Name=CAL96238.1;Note=Probable transcriptional regulator%2C LysR family%2C%3B~Family membership;gbkey=CDS;gene=ptxR;product=probable transcriptional regulator%2C LysR family;protein_id=CAL96238.1;transl_table=11
AM406670.1	EMBL	gene	3973580	3974692	.	+	.	ID=gene3683;Name=adhC;gbkey=Gene;gene=adhC;gene_biotype=protein_coding;locus_tag=azo3623
AM406670.1	EMBL	CDS	3973580	3974692	.	+	0	ID=cds3619;Parent=gene3683;Dbxref=EnsemblGenomes-Gn:azo3623,EnsemblGenomes-Tr:CAL96239,GOA:A1KBN3,InterPro:IPR002085,InterPro:IPR002328,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR014183,InterPro:IPR016040,UniProtKB/TrEMBL:A1KBN3,NCBI_GP:CAL96239.1;Name=CAL96239.1;Note=Alcohol dehydrogenase class III (Formaldehyde dehydrogenase (glutathione)). Homology to fdh of E. coli of 72%25 (trembl|Q59399) CLASS-III ADH IS REMARKABLY INEFFECTIVE IN OXIDIZING ETHANOL BUT IT READILY CATALYZES THE OXIDATION OF LONG-CHAIN PRIMARY ALOCHOLS AND THE OXIDATION OF S-(HYDROXYMETHYL) GLUTATHIONE (BY SIMILARITY). InterPro: Zinc-containing alcohol dehydrogenase superfamily (IPR002085) Zinc-containing alcohol dehydrogenase (IPR002328) Pfam: zinc-binding dehydrogenase Tigrfam: tdh: L-threonine 3-dehydrogenase. no signal peptide. 2 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=adhC;product=alcohol dehydrogenase classIII;protein_id=CAL96239.1;transl_table=11
AM406670.1	EMBL	gene	3974733	3975587	.	+	.	ID=gene3684;Name=azo3624;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3624
AM406670.1	EMBL	CDS	3974733	3975587	.	+	0	ID=cds3620;Parent=gene3684;Dbxref=EnsemblGenomes-Gn:azo3624,EnsemblGenomes-Tr:CAL96240,GOA:A1KBN4,InterPro:IPR000801,InterPro:IPR014186,InterPro:IPR029058,UniProtKB/TrEMBL:A1KBN4,NCBI_GP:CAL96240.1;Name=CAL96240.1;Note=TREMBL:Q88ME4: 72%25 identity%2C83%25 similarity Esterase D (EC 3.1.1.1). This family contains several seemingly unrelated proteins%2C including human esterase D%3B mycobacterial antigen 85%2C which is responsible for the high affinity of mycobacteria to fibronectin%3B Corynebacterium glutamicum major secreted protein PS1%3B and hypothetical proteins from Escherichia coli%2C yeast%2Cmycobacteria and Haemophilus influenzae. InterPro:IPR000801%3B Esterase_put. IPR000379%3B Ser_estrs. Pfam: PF00756%3B Esterase%3B InterPro: Putative esterase Absence of signal peptide and transmembrane helices%3B~Specificity unclear;gbkey=CDS;product=probable esterase;protein_id=CAL96240.1;transl_table=11
AM406670.1	EMBL	gene	3975594	3976508	.	-	.	ID=gene3685;Name=azo3625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3625
AM406670.1	EMBL	CDS	3975594	3976508	.	-	0	ID=cds3621;Parent=gene3685;Dbxref=EnsemblGenomes-Gn:azo3625,EnsemblGenomes-Tr:CAL96241,GOA:A1KBN5,InterPro:IPR000157,UniProtKB/TrEMBL:A1KBN5,NCBI_GP:CAL96241.1;Name=CAL96241.1;Note=Hypothetical membrane protein. no homology to the data bank no doamains predicted no signal peptide 1 TMH;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL96241.1;transl_table=11
AM406670.1	EMBL	gene	3976698	3977960	.	+	.	ID=gene3686;Name=azo3626;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3626
AM406670.1	EMBL	CDS	3976698	3977960	.	+	0	ID=cds3622;Parent=gene3686;Dbxref=EnsemblGenomes-Gn:azo3626,EnsemblGenomes-Tr:CAL96242,GOA:A1KBN6,InterPro:IPR013126,InterPro:IPR018181,UniProtKB/TrEMBL:A1KBN6,NCBI_GP:CAL96242.1;Name=CAL96242.1;Note=Conserved hypothetical chaperon protein: Homology to cv2395 of C. violaceum of 62%25 (trembl|Q7NVE8). InterPro: Heat shock protein hsp70 (IPR001023). Pfam: Hsp70 protein. no signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical chaperon protein;protein_id=CAL96242.1;transl_table=11
AM406670.1	EMBL	gene	3978018	3978974	.	-	.	ID=gene3687;Name=azo3627;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3627
AM406670.1	EMBL	CDS	3978018	3978974	.	-	0	ID=cds3623;Parent=gene3687;Dbxref=EnsemblGenomes-Gn:azo3627,EnsemblGenomes-Tr:CAL96243,GOA:A1KBN7,InterPro:IPR000189,InterPro:IPR006597,InterPro:IPR008258,InterPro:IPR011990,InterPro:IPR023346,UniProtKB/TrEMBL:A1KBN7,NCBI_GP:CAL96243.1;Name=CAL96243.1;Note=Conserved hypothetical SLT domain protein. Homology to NE2226 of N.europaea of 42%25 (trembl|Q82SS9(SRS). Pfam: Transglycosylase SLT domain. Bacterial lytic transglycosylases degrade murein via cleavage of the beta-1%2C4- glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine%2C with the concomitant formation of a 1%2C6-anhydrobond in the muramic acid residue. Escherichia coli has at least three different lytic transglycosylases: two soluble isozymes of 65 Kd and 35 Kd and a membrane-bound enzyme of 38 Kd. The sequence of the 65 Kd enzyme (gene slt) has been determined. A domain of about 90 residues located near the C-terminal section of slt was recently shown to be present in a number of other prokaryotic and phage proteins. This SLT domain shared by these proteins is involved in catalytic activity. The most conserved part of this domain contains the contains two conserved serines and a glutamate which form part of this active site signature. no TMHs. signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical SLT domain protein;protein_id=CAL96243.1;transl_table=11
AM406670.1	EMBL	gene	3979292	3979768	.	+	.	ID=gene3688;Name=azo3628;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3628
AM406670.1	EMBL	CDS	3979292	3979768	.	+	0	ID=cds3624;Parent=gene3688;Dbxref=EnsemblGenomes-Gn:azo3628,EnsemblGenomes-Tr:CAL96244,UniProtKB/TrEMBL:A1KBN8,NCBI_GP:CAL96244.1;Name=CAL96244.1;Note=Hypothetical protein predicted by Glimmer/Critica no homology of the entire protein to the data bank no domains predicted no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96244.1;transl_table=11
AM406670.1	EMBL	gene	3979900	3980787	.	-	.	ID=gene3689;Name=crgA;gbkey=Gene;gene=crgA;gene_biotype=protein_coding;locus_tag=azo3629
AM406670.1	EMBL	CDS	3979900	3980787	.	-	0	ID=cds3625;Parent=gene3689;Dbxref=EnsemblGenomes-Gn:azo3629,EnsemblGenomes-Tr:CAL96245,GOA:A1KBN9,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1KBN9,NCBI_GP:CAL96245.1;Name=CAL96245.1;Note=Transcriptional regulator%2C LysR family%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=crgA;product=transcriptional regulator%2C LysR family;protein_id=CAL96245.1;transl_table=11
AM406670.1	EMBL	gene	3980888	3982096	.	+	.	ID=gene3690;Name=ydeA;gbkey=Gene;gene=ydeA;gene_biotype=protein_coding;locus_tag=azo3630
AM406670.1	EMBL	CDS	3980888	3982096	.	+	0	ID=cds3626;Parent=gene3690;Dbxref=EnsemblGenomes-Gn:azo3630,EnsemblGenomes-Tr:CAL96246,GOA:A1KBP0,InterPro:IPR001958,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1KBP0,NCBI_GP:CAL96246.1;Name=CAL96246.1;Note=Sugar efflux transporter protein%2C involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites. Transports L-arabinose and to a lesser extent IPTG. Seems to contribute to the control of the arabinose regulon. 26%25 MFS.IPR005828%3B Sub_transporter. Belongs to major facilitator superfamily. SotB (TC 2.A.1.2) family. Signal peptide:present. TMHelix:12.%3B~Specificity unclear;gbkey=CDS;gene=ydeA;product=putative transmembrane efflux protein;protein_id=CAL96246.1;transl_table=11
AM406670.1	EMBL	gene	3982119	3982925	.	+	.	ID=gene3691;Name=yafB;gbkey=Gene;gene=yafB;gene_biotype=protein_coding;locus_tag=azo3631
AM406670.1	EMBL	CDS	3982119	3982925	.	+	0	ID=cds3627;Parent=gene3691;Dbxref=EnsemblGenomes-Gn:azo3631,EnsemblGenomes-Tr:CAL96247,GOA:A1KBP1,InterPro:IPR001395,InterPro:IPR018170,InterPro:IPR020471,InterPro:IPR023210,UniProtKB/TrEMBL:A1KBP1,NCBI_GP:CAL96247.1;Name=CAL96247.1;Note=25-diketo-D-gluconic acid reductase B (EC 1.1.1.274) (25-DKG reductase B) (25-DKGR B) (25DKGR-B) (AKR5D). TREMBL:Q8Y090: 67%25 identity%2C 78%25 similarity. Catalyzes the reduction of 25-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG) (By similarity). subunit:monomer (by similarity). subcellular location:cytoplasmic (by similarity). 2-keto-l-gulonic acid is a key intermediate in the production of l-ascorbic acid (vitamin c). belongs to the aldo/keto reductase family InterPro:IPR001395%3B Aldo/ket_red. Pfam:PF00248%3B aldo_ket_red%3B 1. PRINTS PR00069%3B ALDKETRDTAS ribH: riboflavin synthase beta subunit No signal peptide (non secretory protein) predicted by Signal P and no transmembrane helices (predicted by TMHMM).%3B~High confidence in function and specificity;gbkey=CDS;gene=yafB;product=probable 2%2C5-diketo-D-gluconate reductase B;protein_id=CAL96247.1;transl_table=11
AM406670.1	EMBL	gene	3982978	3984780	.	+	.	ID=gene3692;Name=azo3632;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3632
AM406670.1	EMBL	CDS	3982978	3984780	.	+	0	ID=cds3628;Parent=gene3692;Dbxref=EnsemblGenomes-Gn:azo3632,EnsemblGenomes-Tr:CAL96248,GOA:A1KBP2,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KBP2,NCBI_GP:CAL96248.1;Name=CAL96248.1;Note=ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Similar to TREMBL:Q89UA9 (44%25 identity)%3B TREMBL:Q92M72 (44%25 identity)%3B SWISSPROT:Q9JI39 (32%25 identity). InterPro (IPR003439): ABC transporter. InterPro (IPR003593): AAA ATPase. InterPro (IPR001687): ATP/GTP-binding site motif A (P-loop). InterPro (IPR001140): ABC transporter%2Ctransmembrane region. Pfam (PF00664): ABC transporter transmembrane region. Pfam (PF00005): ABC transporter. TMHMM reporting six transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily.%3B~High confidence in function and specificity;gbkey=CDS;product=ABC transporter permease and ATP-binding protein;protein_id=CAL96248.1;transl_table=11
AM406670.1	EMBL	gene	3985096	3985944	.	+	.	ID=gene3693;Name=azo3633;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3633
AM406670.1	EMBL	CDS	3985096	3985944	.	+	0	ID=cds3629;Parent=gene3693;Dbxref=EnsemblGenomes-Gn:azo3633,EnsemblGenomes-Tr:CAL96249,GOA:A1KBP3,InterPro:IPR010809,UniProtKB/TrEMBL:A1KBP3,NCBI_GP:CAL96249.1;Name=CAL96249.1;Note=Hypothetical secreted protein. No significant homology over the entier protein. signal peptide no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL96249.1;transl_table=11
AM406670.1	EMBL	gene	3986061	3988160	.	-	.	ID=gene3694;Name=azo3634;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3634
AM406670.1	EMBL	CDS	3986061	3988160	.	-	0	ID=cds3630;Parent=gene3694;Dbxref=EnsemblGenomes-Gn:azo3634,EnsemblGenomes-Tr:CAL96250,GOA:A1KBP4,InterPro:IPR016582,InterPro:IPR029058,NCBI_GP:CAL96250.1;Name=CAL96250.1;Note=Probable D-(-)-3-hydroxybutyrate oligomer hydrolase. Homology to a orf of Ralstonia pickettii of 48%25 (gi|2154711|dbj|BAA20331.1|(NCBI ENTREZ)). Catalysis of the reaction: (R)-3-((R)-3-hydroxybutanoyloxy)butanoate + H2O %3D 2 (R)-3-hydroxybutanoate. No doamis predicted. Signal peptide. TMHs in signal peptide.%2C%3B~Family membership;gbkey=CDS;product=probable D-(-)-3-hydroxybutyrate oligomer hydrolase;protein_id=CAL96250.1;transl_table=11
AM406670.1	EMBL	gene	3988511	3989053	.	+	.	ID=gene3695;Name=azo3635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3635
AM406670.1	EMBL	CDS	3988511	3989053	.	+	0	ID=cds3631;Parent=gene3695;Dbxref=EnsemblGenomes-Gn:azo3635,EnsemblGenomes-Tr:CAL96251,GOA:A1KBP5,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:A1KBP5,NCBI_GP:CAL96251.1;Name=CAL96251.1;Note=Conserved hypothetical acetyltransferase. Homology to cv2337 of C. violaceum of 43%25 (AAQ60009). InterPro: GCN5-related N-acetyltransferase (IPR000182). Pfam: Acetyltransferase (GNAT) family. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical acetyltransferase;protein_id=CAL96251.1;transl_table=11
AM406670.1	EMBL	gene	3989120	3990949	.	-	.	ID=gene3696;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;locus_tag=azo3636
AM406670.1	EMBL	CDS	3989120	3990949	.	-	0	ID=cds3632;Parent=gene3696;Dbxref=EnsemblGenomes-Gn:azo3636,EnsemblGenomes-Tr:CAL96252,GOA:A1KBP6,InterPro:IPR001347,InterPro:IPR005855,InterPro:IPR017932,InterPro:IPR029055,UniProtKB/TrEMBL:A1KBP6,NCBI_GP:CAL96252.1;Name=CAL96252.1;Note=Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6- phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-phosphate synthase). Catalyzes the first step in hexosamine metabolism converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source (By similarity). InterPro: Glutamine amidotransferase class-II TIGR00274: glucokinase regulator-rela%3B~High confidence in function and specificity;gbkey=CDS;gene=glmS;product=glucosamine-fructose-6-phosphate aminotransferase;protein_id=CAL96252.1;transl_table=11
AM406670.1	EMBL	gene	3990992	3992350	.	-	.	ID=gene3697;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=azo3637
AM406670.1	EMBL	CDS	3990992	3992350	.	-	0	ID=cds3633;Parent=gene3697;Dbxref=EnsemblGenomes-Gn:azo3637,EnsemblGenomes-Tr:CAL96253,GOA:A1KBP7,InterPro:IPR001451,InterPro:IPR005882,InterPro:IPR011004,InterPro:IPR025877,InterPro:IPR029044,NCBI_GP:CAL96253.1;Name=CAL96253.1;Note=Bifunctional glmU protein [Includes: UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase)%3B Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.57)]. Bifunctional enzyme responsible for the acetylation of Glc-N-1-P to give GlcNAc-1-P and the synthesis of UDP-GlcNAc. InterPro: ADP-glucose pyrophosphorylase ispD: 4-diphosphocytidyl-2C-methyl-D-e%3B~High confidence in function and specificity;gbkey=CDS;gene=glmU;product=UDP-N-acetylglucosamine pyrophosphorylase / diamine N-acetyltransferase;protein_id=CAL96253.1;transl_table=11
AM406670.1	EMBL	gene	3992536	3993945	.	+	.	ID=gene3698;Name=pta;gbkey=Gene;gene=pta;gene_biotype=protein_coding;locus_tag=azo3638
AM406670.1	EMBL	CDS	3992536	3993945	.	+	0	ID=cds3634;Parent=gene3698;Dbxref=EnsemblGenomes-Gn:azo3638,EnsemblGenomes-Tr:CAL96254,GOA:A1KBP8,InterPro:IPR002505,InterPro:IPR002539,InterPro:IPR029069,UniProtKB/TrEMBL:A1KBP8,NCBI_GP:CAL96254.1;Name=CAL96254.1;Note=Conserved hypothetical phosphate acetyltransferase. Homology to pta of R. palustris of 63%25 (tremblnew|CAE30007). InterPro: Phosphate acetyl/butaryl transferase (IPR002505)%3B MaoC-like dehydrogenase domain (IPR002539). Pfam: MaoC like domain%3B Phosphate acetyl/butaryl transferase. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=pta;product=conserved hypothetical phosphate acetyltransferase;protein_id=CAL96254.1;transl_table=11
AM406670.1	EMBL	gene	3993942	3995129	.	+	.	ID=gene3699;Name=ackA;gbkey=Gene;gene=ackA;gene_biotype=protein_coding;locus_tag=azo3639
AM406670.1	EMBL	CDS	3993942	3995129	.	+	0	ID=cds3635;Parent=gene3699;Dbxref=EnsemblGenomes-Gn:azo3639,EnsemblGenomes-Tr:CAL96255,GOA:A1KBP9,InterPro:IPR000890,InterPro:IPR004372,InterPro:IPR023865,UniProtKB/TrEMBL:A1KBP9,NCBI_GP:CAL96255.1;Name=CAL96255.1;Note=probable acetate kinase. Homology to ackA of s. meliloti of 46%25 (sprot|ACK2_RHIME) Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate %3D ADP + acetyl phosphate. InterPro: Acetate kinase (IPR004372)%3B acetate and butyrate kinase (IPR000890) Pfam: Acetokinase family Tigrfam: ackA: acetate kinase no singal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ackA;product=probable acetate kinase;protein_id=CAL96255.1;transl_table=11
AM406670.1	EMBL	gene	3995147	3995914	.	-	.	ID=gene3700;Name=azo3640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3640
AM406670.1	EMBL	CDS	3995147	3995914	.	-	0	ID=cds3636;Parent=gene3700;Dbxref=EnsemblGenomes-Gn:azo3640,EnsemblGenomes-Tr:CAL96256,GOA:A1KBQ0,InterPro:IPR002781,UniProtKB/TrEMBL:A1KBQ0,NCBI_GP:CAL96256.1;Name=CAL96256.1;Note=Conserved hypothetical membrane protein. TREMBL:Q9A2S0: 40%25 identity InterPro:IPR002781%3B DUF81. Pfam:PF01925%3B DUF81. Non secretory protein (signal peptide probablity:0.035) and presence of 7 transmembrane helices (TMHMM predicted).%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96256.1;transl_table=11
AM406670.1	EMBL	gene	3996223	3997689	.	-	.	ID=gene3701;Name=gltD;gbkey=Gene;gene=gltD;gene_biotype=protein_coding;locus_tag=azo3641
AM406670.1	EMBL	CDS	3996223	3997689	.	-	0	ID=cds3637;Parent=gene3701;Dbxref=EnsemblGenomes-Gn:azo3641,EnsemblGenomes-Tr:CAL96257,GOA:A1KBQ1,InterPro:IPR001327,InterPro:IPR006005,InterPro:IPR009051,InterPro:IPR017896,InterPro:IPR023753,InterPro:IPR028261,UniProtKB/TrEMBL:A1KBQ1,NCBI_GP:CAL96257.1;Name=CAL96257.1;Note=Glutamate synthase [NADPH] precursor (EC 1.4.1.13) (NADPH-GOGAT)small chain. TREMBL:Q8XV67-77%25 identity%2C 87%25 similarity InterPro:IPR006005- One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (EC: 1.4.1.13) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP+ %3D L-glutamine + 2-oxoglutarate + NADPH + H+ gid: gid protein Pfam:FAD binding domain%2CThi family%2C 4Fe-4S binding domain%2CKTN-NAD binding domain%2C DUF127.%3B~High confidence in function and specificity;gbkey=CDS;gene=gltD;product=glutamate synthase (small chain) oxidoreductase;protein_id=CAL96257.1;transl_table=11
AM406670.1	EMBL	gene	3997694	4002367	.	-	.	ID=gene3702;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;locus_tag=azo3642
AM406670.1	EMBL	CDS	3997694	4002367	.	-	0	ID=cds3638;Parent=gene3702;Dbxref=EnsemblGenomes-Gn:azo3642,EnsemblGenomes-Tr:CAL96258,GOA:A1KBQ2,InterPro:IPR000583,InterPro:IPR002489,InterPro:IPR002932,InterPro:IPR006982,InterPro:IPR013785,InterPro:IPR017932,InterPro:IPR029055,UniProtKB/TrEMBL:A1KBQ2,NCBI_GP:CAL96258.1;Name=CAL96258.1;Note=Ferredoxin-dependent glutamate synthase%2C%3B~Specificity unclear;gbkey=CDS;gene=gltB;product=probable Ferredoxin-dependent glutamate synthase;protein_id=CAL96258.1;transl_table=11
AM406670.1	EMBL	gene	4002629	4003768	.	-	.	ID=gene3703;Name=azo3643;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3643
AM406670.1	EMBL	CDS	4002629	4003768	.	-	0	ID=cds3639;Parent=gene3703;Dbxref=EnsemblGenomes-Gn:azo3643,EnsemblGenomes-Tr:CAL96259,GOA:A1KBQ3,InterPro:IPR003607,InterPro:IPR006261,InterPro:IPR006674,InterPro:IPR023023,InterPro:IPR026875,NCBI_GP:CAL96259.1;Name=CAL96259.1;Note=Probable dNTP triphosphohydrolase. Homology to an orf of Thermus thermophilus of 46%25 (gi|37572416|dbj|BAC98488.1|(NCBI ENTREZ)). Pfam: HDc. The HD domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism%2C signal transduction and possibly other functions in bacteria%2C archaea and eukaryotes. The fact that all the highly conserved redisues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins. This domain is also found in eukaryotic 3'%2C5'-cGMP phosphodiesterase (EC 3.1.4.17) (PDE)%2C which is located in photoreceptor outer segments and it is light activated%2C playing a pivotal role in signal transduction. This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit). Interpro: IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase. DeoxyGTP triphosphohydrolase (dgt) releases inorganic triphosphate%2Can unusual reaction product%2C from GTP. Its activity has been called limited to the Enterobacteriaceae%2C although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species%2C the homologous gene is found in an apparent operon with dnaG%2C the DNA primase gene. The enzyme from Escherichia coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown. No signal peptide. No TMHs.%3B~Specificity unclear;gbkey=CDS;product=probable dNTP triphosphohydrolase;protein_id=CAL96259.1;transl_table=11
AM406670.1	EMBL	gene	4003759	4004841	.	-	.	ID=gene3704;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=azo3644
AM406670.1	EMBL	CDS	4003759	4004841	.	-	0	ID=cds3640;Parent=gene3704;Dbxref=EnsemblGenomes-Gn:azo3644,EnsemblGenomes-Tr:CAL96260,GOA:A1KBQ4,InterPro:IPR016037,NCBI_GP:CAL96260.1;Name=CAL96260.1;Note=Probable 3-dehydroquinate synthase %2C 61%25 Identity to SwissProt%3BQ7NZU4%2CQ82TB9. TrEMBL%3BQ60BY2 Has Pfam01761%2CDHQ_synthase%2C 3-dehydroquinate synthase. The 3-dehydroquinate synthase EC:4.6.1.3 domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide. 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.;gbkey=CDS;gene=aroB;product=3-dehydroquinate synthase;protein_id=CAL96260.1;transl_table=11
AM406670.1	EMBL	gene	4004829	4005365	.	-	.	ID=gene3705;Name=aroK;gbkey=Gene;gene=aroK;gene_biotype=protein_coding;locus_tag=azo3645
AM406670.1	EMBL	CDS	4004829	4005365	.	-	0	ID=cds3641;Parent=gene3705;Dbxref=EnsemblGenomes-Gn:azo3645,EnsemblGenomes-Tr:CAL96261,GOA:A1KBQ5,InterPro:IPR000623,InterPro:IPR023000,InterPro:IPR027417,UniProtKB/TrEMBL:A1KBQ5,NCBI_GP:CAL96261.1;Name=CAL96261.1;Note=Probable shikimate kinase. Homology to aroK of E. coli of 44%25 (sprot|AROK_ECOLI) Catalyzes the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway). The enzyme catalyzes the following reaction: ATP + shikimate %3D ADP + shikimate-3-phosphate InterPro: Shikimate kinase(IPR000623) Pfam: Shikimate kinase no signal peptide no TMHs DTMP_kinase: thymidylate kinase%3B~High confidence in function and specificity;gbkey=CDS;gene=aroK;product=probable shikimate kinase;protein_id=CAL96261.1;transl_table=11
AM406670.1	EMBL	gene	4005442	4007565	.	-	.	ID=gene3706;Name=pilQ;gbkey=Gene;gene=pilQ;gene_biotype=protein_coding;locus_tag=azo3646
AM406670.1	EMBL	CDS	4005442	4007565	.	-	0	ID=cds3642;Parent=gene3706;Dbxref=EnsemblGenomes-Gn:azo3646,EnsemblGenomes-Tr:CAL96262,GOA:A1KBQ6,InterPro:IPR001775,InterPro:IPR004845,InterPro:IPR004846,InterPro:IPR005644,InterPro:IPR011662,InterPro:IPR013355,InterPro:IPR021731,UniProtKB/TrEMBL:A1KBQ6,NCBI_GP:CAL96262.1;Name=CAL96262.1;Note=Type 4 fimbrial biogenesis protein PilQ%2C similarity to sprot|PILQ_PSEAE (41%25) and trembl|Q8XV60 (45%25). PilQ is essential for the biogenesis of type IV pili. Its precise function is unknown%2C but it has been suggested that it may act as a pilus channel in the final stages of pilus assembly. InterPro (PF00263): General (type II) secretion pathway (GSP) D protein SignalP reporting signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=pilQ;product=probable type 4 fimbrial biogenesis protein;protein_id=CAL96262.1;transl_table=11
AM406670.1	EMBL	gene	4007562	4008077	.	-	.	ID=gene3707;Name=pilP;gbkey=Gene;gene=pilP;gene_biotype=protein_coding;locus_tag=azo3647
AM406670.1	EMBL	CDS	4007562	4008077	.	-	0	ID=cds3643;Parent=gene3707;Dbxref=EnsemblGenomes-Gn:azo3647,EnsemblGenomes-Tr:CAL96263,InterPro:IPR007446,UniProtKB/TrEMBL:A1KBQ7,NCBI_GP:CAL96263.1;Name=CAL96263.1;Note=Type 4 fimbrial biogenesis protein%2C PilP. PilP is essential for the biogenesis of type IV pili. Similar to trembl|Q7NZU1(37%25). SignalP reporting Signal Peptide.%3B~Family membership;gbkey=CDS;gene=pilP;product=putative type 4 fimbrial biogenesis protein;protein_id=CAL96263.1;transl_table=11
AM406670.1	EMBL	gene	4008074	4008748	.	-	.	ID=gene3708;Name=pilO;gbkey=Gene;gene=pilO;gene_biotype=protein_coding;locus_tag=azo3648
AM406670.1	EMBL	CDS	4008074	4008748	.	-	0	ID=cds3644;Parent=gene3708;Dbxref=EnsemblGenomes-Gn:azo3648,EnsemblGenomes-Tr:CAL96264,InterPro:IPR007445,InterPro:IPR014717,InterPro:IPR023218,UniProtKB/TrEMBL:A1KBQ8,NCBI_GP:CAL96264.1;Name=CAL96264.1;Note=Type 4 fimbrial biogenesis protein PilO%2C similarity to pir|S77728 (40%25). PilO proteins are involved in the assembly of pilin. TMHMM reporting one TMH.%3B~Specificity unclear;gbkey=CDS;gene=pilO;product=probable type 4 fimbrial biogenesis protein;protein_id=CAL96264.1;transl_table=11
AM406670.1	EMBL	gene	4008745	4009344	.	-	.	ID=gene3709;Name=pilN;gbkey=Gene;gene=pilN;gene_biotype=protein_coding;locus_tag=azo3649
AM406670.1	EMBL	CDS	4008745	4009344	.	-	0	ID=cds3645;Parent=gene3709;Dbxref=EnsemblGenomes-Gn:azo3649,EnsemblGenomes-Tr:CAL96265,InterPro:IPR007813,UniProtKB/TrEMBL:A1KBQ9,NCBI_GP:CAL96265.1;Name=CAL96265.1;Note=Type 4 fimbrial biogenesis protein PilN%2C similarity to trembl|Q82SK2(51%25)and to pir|S77727(42%25). In P. aeruginosa PilN was found to be required for fimbrial biogenesis by complementation studies using twitching motility and sensitivity to fimbrial-specific phage as indicators of the presence of functional fimbriae. SignalP reporting signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=pilN;product=probable type 4 fimbrial biogenesis protein;protein_id=CAL96265.1;transl_table=11
AM406670.1	EMBL	gene	4009341	4010417	.	-	.	ID=gene3710;Name=pilM;gbkey=Gene;gene=pilM;gene_biotype=protein_coding;locus_tag=azo3650
AM406670.1	EMBL	CDS	4009341	4010417	.	-	0	ID=cds3646;Parent=gene3710;Dbxref=EnsemblGenomes-Gn:azo3650,EnsemblGenomes-Tr:CAL96266,InterPro:IPR005883,UniProtKB/TrEMBL:A1KBR0,NCBI_GP:CAL96266.1;Name=CAL96266.1;Note=Type 4 fimbrial biogenesis protein PilM%2C similarity to trembl|Q82SK1 (56%25)and to pir|S77726 (47%25). Four genes%2CpilM-P%2C encode the necessary proteins and pilM is required for the assembly of the type IV fimbriae in Pseudomonas aeruginosa.%3B~Specificity unclear;gbkey=CDS;gene=pilM;product=probable type 4 fimbrial biogenesis protein;protein_id=CAL96266.1;transl_table=11
AM406670.1	EMBL	gene	4010609	4012981	.	+	.	ID=gene3711;Name=mrcA;gbkey=Gene;gene=mrcA;gene_biotype=protein_coding;locus_tag=azo3651
AM406670.1	EMBL	CDS	4010609	4012981	.	+	0	ID=cds3647;Parent=gene3711;Dbxref=EnsemblGenomes-Gn:azo3651,EnsemblGenomes-Tr:CAL96267,GOA:A1KBR1,InterPro:IPR001264,InterPro:IPR001460,InterPro:IPR011816,InterPro:IPR012338,InterPro:IPR012340,InterPro:IPR023346,UniProtKB/TrEMBL:A1KBR1,NCBI_GP:CAL96267.1;Name=CAL96267.1;Note=Probable penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes: Penicillin- insensitive transglycosylase (EC 2.4.2.-) (Peptidoglycan TGase)%3B Penicillin-sensitive transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]. Homology to mrcA of N. meningitides of 47%25 (sprot|PBPA_NEIMA(SRS)) Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (By similarity). InterPro: Penicillin binding protein transpeptidase domain (IPR001460)%3B Glycosyltransferase family 51 (IPR001264) Pfam: Transglycosylase%3B Penicillin binding protein transpeptidase singal peptide no TMHs HTH predicted%3B~High confidence in function and specificity;gbkey=CDS;gene=mrcA;product=probable penicillin-binding protein 1A;protein_id=CAL96267.1;transl_table=11
AM406670.1	EMBL	gene	4012971	4013348	.	-	.	ID=gene3712;Name=cyaY;gbkey=Gene;gene=cyaY;gene_biotype=protein_coding;locus_tag=azo3652
AM406670.1	EMBL	CDS	4012971	4013348	.	-	0	ID=cds3648;Parent=gene3712;Dbxref=EnsemblGenomes-Gn:azo3652,EnsemblGenomes-Tr:CAL96268,GOA:A1KBR2,InterPro:IPR002908,UniProtKB/TrEMBL:A1KBR2,NCBI_GP:CAL96268.1;Name=CAL96268.1;Note=CyaY protein that belongs to the frataxin family.Probably involved in iron metabolism. 33%25 similarity to CyaY protein from E.coli. SWISSPROT:CYAY_YERPE:P46356 InterPro:IPR002908%3B Frataxin_like. Pfam:PF01491%3B Frataxin_Cyay%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=cyaY;product=putative CyaY protein;protein_id=CAL96268.1;transl_table=11
AM406670.1	EMBL	gene	4013347	4013517	.	+	.	ID=gene3713;Name=azo3653;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3653
AM406670.1	EMBL	CDS	4013347	4013517	.	+	0	ID=cds3649;Parent=gene3713;Dbxref=EnsemblGenomes-Gn:azo3653,EnsemblGenomes-Tr:CAL96269,UniProtKB/TrEMBL:A1KBR3,NCBI_GP:CAL96269.1;Name=CAL96269.1;Note=Conserved hypothetical secreted protein. Homology to ypo3846 of Y. pestis of 42%25 (trembl|Q8ZAF7). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96269.1;transl_table=11
AM406670.1	EMBL	gene	4013514	4014788	.	+	.	ID=gene3714;Name=lysA2;gbkey=Gene;gene=lysA2;gene_biotype=protein_coding;locus_tag=azo3654
AM406670.1	EMBL	CDS	4013514	4014788	.	+	0	ID=cds3650;Parent=gene3714;Dbxref=EnsemblGenomes-Gn:azo3654,EnsemblGenomes-Tr:CAL96270,GOA:A1KBR4,InterPro:IPR000183,InterPro:IPR002986,InterPro:IPR009006,InterPro:IPR022643,InterPro:IPR022644,InterPro:IPR022657,InterPro:IPR029066,UniProtKB/TrEMBL:A1KBR4,NCBI_GP:CAL96270.1;Name=CAL96270.1;Note=Diaminopimelate decarboxylase%2C LysA. Similar to sprot|DCDA_PSEAE (64%25). Pyridoxal-dependent decarboxylases that act on ornithine-%2C lysine-%2C arginine- and related substrates can be classified into different families on the basis of sequence similarity. Prokaryotic diaminopimelic acid decarboxylase (DAPDC) catalyses the conversion of diaminopimelic acid into lysine%2C the final step of lysine biosynthesis. InterPro(PR01181): Diaminopimelate decarboxylase InterPro(PF00278): Orn/DAP/Arg decarboxylases family 2%3B~High confidence in function and specificity;gbkey=CDS;gene=lysA2;product=LysA2 protein;protein_id=CAL96270.1;transl_table=11
AM406670.1	EMBL	gene	4014811	4015158	.	-	.	ID=gene3715;Name=azo3655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3655
AM406670.1	EMBL	CDS	4014811	4015158	.	-	0	ID=cds3651;Parent=gene3715;Dbxref=EnsemblGenomes-Gn:azo3655,EnsemblGenomes-Tr:CAL96271,UniProtKB/TrEMBL:A1KBR5,NCBI_GP:CAL96271.1;Name=CAL96271.1;Note=Conserved hypothetical protein. Homology to ebA2272 of Azoarcus sp. EbN1 of 62%25 (gnl|keqq|eba:ebA2272(KEGG)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96271.1;transl_table=11
AM406670.1	EMBL	gene	4015219	4016685	.	+	.	ID=gene3716;Name=dacB;gbkey=Gene;gene=dacB;gene_biotype=protein_coding;locus_tag=azo3656
AM406670.1	EMBL	CDS	4015219	4016685	.	+	0	ID=cds3652;Parent=gene3716;Dbxref=EnsemblGenomes-Gn:azo3656,EnsemblGenomes-Tr:CAL96272,GOA:A1KBR6,InterPro:IPR000667,InterPro:IPR012338,UniProtKB/TrEMBL:A1KBR6,NCBI_GP:CAL96272.1;Name=CAL96272.1;Note=Penicillin-binding protein 4 precursor (PBP-4) [Includes: D-alanyl-D- alanine carboxypeptidase (EC 3.4.16.4) (DD-peptidase) (DD- carboxypeptidase)%3B D-alanyl-D-alanine-endopeptidase (DD-endopeptidase)]. Not involved in transpeptidation but exclusively catalyzes a DD-carboxypeptidase and DD-endopeptidase reaction. PBP4: D-alanyl-D-alanine carboxypeptid%3B~High confidence in function and specificity;gbkey=CDS;gene=dacB;product=Serine-type D-Ala-D-Ala carboxypeptidase;protein_id=CAL96272.1;transl_table=11
AM406670.1	EMBL	gene	4016702	4017118	.	-	.	ID=gene3717;Name=azo3657;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3657
AM406670.1	EMBL	CDS	4016702	4017118	.	-	0	ID=cds3653;Parent=gene3717;Dbxref=EnsemblGenomes-Gn:azo3657,EnsemblGenomes-Tr:CAL96273,UniProtKB/TrEMBL:A1KBR7,NCBI_GP:CAL96273.1;Name=CAL96273.1;Note=Conserved hypothetical membrane protein. Homology to bb4211 of B. bronchiseptica of 37%25 (trembl|Q7WFQ9(SRS)). No domains predicted. No signal peptide. 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96273.1;transl_table=11
AM406670.1	EMBL	gene	4017168	4018658	.	-	.	ID=gene3718;Name=yigC;gbkey=Gene;gene=yigC;gene_biotype=protein_coding;locus_tag=azo3658
AM406670.1	EMBL	CDS	4017168	4018658	.	-	0	ID=cds3654;Parent=gene3718;Dbxref=EnsemblGenomes-Gn:azo3658,EnsemblGenomes-Tr:CAL96274,GOA:A1KBR8,InterPro:IPR002830,InterPro:IPR012349,InterPro:IPR023677,NCBI_GP:CAL96274.1;Name=CAL96274.1;Note=3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) (Polyprenyl p-hydroxybenzoate decarboxylase). CATALYZES THE DECARBOXYLATION OF 3-OCTAPRENYL-4-HYDROXY BENZOATE TO 2-OCTAPRENYLPHENOL (BY SIMILARITY).%3B~High confidence in function and specificity;gbkey=CDS;gene=yigC;product=3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec;protein_id=CAL96274.1;transl_table=11
AM406670.1	EMBL	gene	4018668	4019480	.	-	.	ID=gene3719;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=azo3659
AM406670.1	EMBL	CDS	4018668	4019480	.	-	0	ID=cds3655;Parent=gene3719;Dbxref=EnsemblGenomes-Gn:azo3659,EnsemblGenomes-Tr:CAL96275,GOA:A1KBR9,InterPro:IPR001754,InterPro:IPR011060,InterPro:IPR011995,InterPro:IPR013785,InterPro:IPR018089,NCBI_GP:CAL96275.1;Name=CAL96275.1;Note=Orotidine-5'-phosphate decarboxylase (Orotidylic decarboxylase) (OMP decarboxylase) (OMPdcase) (Uridine 5'-monophosphate synthase) (UMP synthase)%3B~High confidence in function and specificity;gbkey=CDS;gene=pyrF;product=Official Name Orotidine-5'-phosphate decarboxylase;protein_id=CAL96275.1;transl_table=11
AM406670.1	EMBL	gene	4019543	4020316	.	-	.	ID=gene3720;Name=npd2;gbkey=Gene;gene=npd2;gene_biotype=protein_coding;locus_tag=azo3660
AM406670.1	EMBL	CDS	4019543	4020316	.	-	0	ID=cds3656;Parent=gene3720;Dbxref=EnsemblGenomes-Gn:azo3660,EnsemblGenomes-Tr:CAL96276,GOA:A1KBS0,InterPro:IPR003000,InterPro:IPR026590,InterPro:IPR026591,InterPro:IPR029035,UniProtKB/TrEMBL:A1KBS0,NCBI_GP:CAL96276.1;Name=CAL96276.1;Note=NAD-dependent deacetylase 2 (EC 3.5.1.-) (Regulatory protein SIR2 homolog 2). Modulates the activities of several enzymes which are inactive in their acetylated form. Similar to SWISSPROT: sprot|NPD2_PSEAE (50%25 Pseudomonas aeruginosa%2C Npd2) / sprot|NPD1_ARCFU (33%25 Archaeoglobus fulgidus%2C NpdA) InterPro: IPR003000 SIR2. Pfam: PF02146 Sir2 family.%3B~High confidence in function and specificity;gbkey=CDS;gene=npd2;product=NAD-dependent deacetylase;protein_id=CAL96276.1;transl_table=11
AM406670.1	EMBL	gene	4020405	4022477	.	-	.	ID=gene3721;Name=azo3661;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3661
AM406670.1	EMBL	CDS	4020405	4022477	.	-	0	ID=cds3657;Parent=gene3721;Dbxref=EnsemblGenomes-Gn:azo3661,EnsemblGenomes-Tr:CAL96277,GOA:A1KBS1,InterPro:IPR006655,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,UniProtKB/TrEMBL:A1KBS1,NCBI_GP:CAL96277.1;Name=CAL96277.1;Note=Conserved hypothetical molybdopterin oxidoreductase. Homology to rsc2859 of R. solanacearum of 60%25 (trembl|Q8XVH2). Tigrfam: bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxidoreductases. Pfam: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain. Helixturnhelix motif. no signal sequenz. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical molybdopterin oxidoreductase;protein_id=CAL96277.1;transl_table=11
AM406670.1	EMBL	gene	4022532	4023209	.	-	.	ID=gene3722;Name=azo3662;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3662
AM406670.1	EMBL	CDS	4022532	4023209	.	-	0	ID=cds3658;Parent=gene3722;Dbxref=EnsemblGenomes-Gn:azo3662,EnsemblGenomes-Tr:CAL96278,InterPro:IPR025392,UniProtKB/TrEMBL:A1KBS2,NCBI_GP:CAL96278.1;Name=CAL96278.1;Note=Conserved hypothetical secreted proteinn. Homology to ebA3326 Azoarcus sp. EbN1 of 47%25 (gnl|keqq|eba:ebA3326(KEGG)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96278.1;transl_table=11
AM406670.1	EMBL	gene	4023187	4023855	.	-	.	ID=gene3723;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=azo3663
AM406670.1	EMBL	CDS	4023187	4023855	.	-	0	ID=cds3659;Parent=gene3723;Dbxref=EnsemblGenomes-Gn:azo3663,EnsemblGenomes-Tr:CAL96279,GOA:A1KBS3,InterPro:IPR000836,InterPro:IPR004467,InterPro:IPR023031,InterPro:IPR029057,UniProtKB/TrEMBL:A1KBS3,NCBI_GP:CAL96279.1;Name=CAL96279.1;Note=Orotate phosphoribosyltransferase (Orotidylic acid phosphorylase) (Orotidine-5'-phosphate pyrophosphorylase) (Orotidine-5'-phosphate diphosphorylase) (OPRT) InterPro: Orotate phosphoribosyltransferase%3B~High confidence in function and specificity;gbkey=CDS;gene=pyrE;product=Official Name Orotate phosphoribosyltransferase;protein_id=CAL96279.1;transl_table=11
AM406670.1	EMBL	gene	4023919	4024701	.	+	.	ID=gene3724;Name=xthA2;gbkey=Gene;gene=xthA2;gene_biotype=protein_coding;locus_tag=azo3664
AM406670.1	EMBL	CDS	4023919	4024701	.	+	0	ID=cds3660;Parent=gene3724;Dbxref=EnsemblGenomes-Gn:azo3664,EnsemblGenomes-Tr:CAL96280,GOA:A1KBS4,InterPro:IPR004808,InterPro:IPR005135,InterPro:IPR020847,UniProtKB/TrEMBL:A1KBS4,NCBI_GP:CAL96280.1;Name=CAL96280.1;Note=Exodeoxyribonuclease (EC 3.1.11.2). InterPro: AP endonucleases family 1%3B~High confidence in function and specificity;gbkey=CDS;gene=xthA2;product=Exodeoxyribonuclease III;protein_id=CAL96280.1;transl_table=11
AM406670.1	EMBL	gene	4024848	4027106	.	+	.	ID=gene3725;Name=azo3665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3665
AM406670.1	EMBL	CDS	4024848	4027106	.	+	0	ID=cds3661;Parent=gene3725;Dbxref=EnsemblGenomes-Gn:azo3665,EnsemblGenomes-Tr:CAL96281,GOA:A1KBS5,InterPro:IPR000160,InterPro:IPR001633,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR021800,InterPro:IPR029787,UniProtKB/TrEMBL:A1KBS5,NCBI_GP:CAL96281.1;Name=CAL96281.1;Note=Conserved hypothetical signaling protein. Homology to IL2267 of Idiomarina loihiensis of 35%25 (gnl|keqq|ilo:IL2267(KEGG)). InterPro: IPR001633 EAL. IPR000160 GGDEF. Pfam: PF00563 EAL. PF00990 GGDEF. SMART: SM00267 DUF1. SM00052 DUF2. TIGRFAM:TIGR00254 GGDEF. Signaling protein ykoW. Probable signaling protein whose physiological role is not yet known. no signal peptide. No TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical signaling protein;protein_id=CAL96281.1;transl_table=11
AM406670.1	EMBL	gene	4027103	4028941	.	+	.	ID=gene3726;Name=azo3666;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3666
AM406670.1	EMBL	CDS	4027103	4028941	.	+	0	ID=cds3662;Parent=gene3726;Dbxref=EnsemblGenomes-Gn:azo3666,EnsemblGenomes-Tr:CAL96282,GOA:A1KBS6,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR029151,UniProtKB/TrEMBL:A1KBS6,NCBI_GP:CAL96282.1;Name=CAL96282.1;Note=Putative sensor histidine kinase%2C low similarity to SWISSPROT: sprot|KINB_PSEAE (13%25 Pseudomonas aeruginosa%2Calginate biosynthesis sensor protein KinB) / TREMBL: trembl|Q50853 (13%25 Myxococcus xanthus%2C AsgA) InterPro: IPR004358 Bact_sens_pr_C. IPR003661 His_kinA_N. IPR005467 His_kinase. Pfam: PF02518 HATPase_c. PF00512 HisKA. SMART: SM00387 HATPase_c. SM00388 HisKA. TMHMM reporting 1 transmembrane helices.%3B~Family membership;gbkey=CDS;product=putative sensor histidine kinase;protein_id=CAL96282.1;transl_table=11
AM406670.1	EMBL	gene	4029038	4029346	.	+	.	ID=gene3727;Name=azo3667;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3667
AM406670.1	EMBL	CDS	4029038	4029346	.	+	0	ID=cds3663;Parent=gene3727;Dbxref=EnsemblGenomes-Gn:azo3667,EnsemblGenomes-Tr:CAL96283,InterPro:IPR010279,UniProtKB/TrEMBL:A1KBS7,NCBI_GP:CAL96283.1;Name=CAL96283.1;Note=Conserved hypothetical membrane protein. Homology to RS05100 of Ralstonia solanacearum of 50%25 (trembl|Q8Y1D7(SRS)). Has PF05957%2C Bacterial protein of unknown function (DUF883)%3BIPR010279%3B This family consists of several hypothetical bacterial proteins of unknown function. no signal peptide. 1 TMH%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96283.1;transl_table=11
AM406670.1	EMBL	gene	4029352	4029735	.	+	.	ID=gene3728;Name=azo3668;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3668
AM406670.1	EMBL	CDS	4029352	4029735	.	+	0	ID=cds3664;Parent=gene3728;Dbxref=EnsemblGenomes-Gn:azo3668,EnsemblGenomes-Tr:CAL96284,InterPro:IPR009937,UniProtKB/TrEMBL:A1KBS8,NCBI_GP:CAL96284.1;Name=CAL96284.1;Note=Conserved hypothetical membrane protein. Homology to rs05101 R. solanacearum of 36%25 (trembl|Q8Y1D8(SRS)). No domains predicted. No signal peptide. 2 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96284.1;transl_table=11
AM406670.1	EMBL	gene	4029732	4030103	.	+	.	ID=gene3729;Name=azo3669;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3669
AM406670.1	EMBL	CDS	4029732	4030103	.	+	0	ID=cds3665;Parent=gene3729;Dbxref=EnsemblGenomes-Gn:azo3669,EnsemblGenomes-Tr:CAL96285,InterPro:IPR025612,UniProtKB/TrEMBL:A1KBS9,NCBI_GP:CAL96285.1;Name=CAL96285.1;Note=Conserved hypothetical protein. Homology to ebD74 of Azoarcus sp. EbN1 of 36%25 (gnl|keqq|eba:ebD74(KEGG)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96285.1;transl_table=11
AM406670.1	EMBL	gene	4030246	4030803	.	+	.	ID=gene3730;Name=hpt;gbkey=Gene;gene=hpt;gene_biotype=protein_coding;locus_tag=azo3670
AM406670.1	EMBL	CDS	4030246	4030803	.	+	0	ID=cds3666;Parent=gene3730;Dbxref=EnsemblGenomes-Gn:azo3670,EnsemblGenomes-Tr:CAL96286,GOA:A1KBT0,InterPro:IPR000836,InterPro:IPR029057,UniProtKB/TrEMBL:A1KBT0,NCBI_GP:CAL96286.1;Name=CAL96286.1;Note=Hypoxanthine phosphoribosyltransferase (Hypoxanthine-guanine phosphoribosyltransferase. (HGPRTase) (IMP pyrophosphorylase) (IMP diphosphorylase) (Transphosphoribosidase) (Guanine phosphoribosyltransferase)%3B~Function unclear;gbkey=CDS;gene=hpt;product=hypoxanthine phosphoribosyltransferase;protein_id=CAL96286.1;transl_table=11
AM406670.1	EMBL	gene	4030814	4031149	.	+	.	ID=gene3731;Name=azo3671;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3671
AM406670.1	EMBL	CDS	4030814	4031149	.	+	0	ID=cds3667;Parent=gene3731;Dbxref=EnsemblGenomes-Gn:azo3671,EnsemblGenomes-Tr:CAL96287,InterPro:IPR014991,UniProtKB/TrEMBL:A1KBT1,NCBI_GP:CAL96287.1;Name=CAL96287.1;Note=Conserved hypothetical protein. Homology to BPP4351 of B.parapertussis of 38%25 (trembl:Q7W2Q3). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96287.1;transl_table=11
AM406670.1	EMBL	gene	4031270	4031950	.	+	.	ID=gene3732;Name=qseB2;gbkey=Gene;gene=qseB2;gene_biotype=protein_coding;locus_tag=azo3672
AM406670.1	EMBL	CDS	4031270	4031950	.	+	0	ID=cds3668;Parent=gene3732;Dbxref=EnsemblGenomes-Gn:azo3672,EnsemblGenomes-Tr:CAL96288,GOA:A1KBT2,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:A1KBT2,NCBI_GP:CAL96288.1;Name=CAL96288.1;Note=DNA-binding response regulator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=qseB2;product=DNA-binding response regulator;protein_id=CAL96288.1;transl_table=11
AM406670.1	EMBL	gene	4032106	4033452	.	+	.	ID=gene3733;Name=qseC2;gbkey=Gene;gene=qseC2;gene_biotype=protein_coding;locus_tag=azo3673
AM406670.1	EMBL	CDS	4032106	4033452	.	+	0	ID=cds3669;Parent=gene3733;Dbxref=EnsemblGenomes-Gn:azo3673,EnsemblGenomes-Tr:CAL96289,GOA:A1KBT3,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:A1KBT3,NCBI_GP:CAL96289.1;Name=CAL96289.1;Note=Two-component system histidine kinase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=qseC2;product=two-component system histidine kinase;protein_id=CAL96289.1;transl_table=11
AM406670.1	EMBL	gene	4033530	4034963	.	+	.	ID=gene3734;Name=mucD4;gbkey=Gene;gene=mucD4;gene_biotype=protein_coding;locus_tag=azo3674
AM406670.1	EMBL	CDS	4033530	4034963	.	+	0	ID=cds3670;Parent=gene3734;Dbxref=EnsemblGenomes-Gn:azo3674,EnsemblGenomes-Tr:CAL96290,GOA:A1KBT4,InterPro:IPR001478,InterPro:IPR001940,InterPro:IPR009003,InterPro:IPR011782,UniProtKB/TrEMBL:A1KBT4,NCBI_GP:CAL96290.1;Name=CAL96290.1;Note=Probable serine protease MucD. Homology to mucD of P. aeruginosa of 51%25 (trembl|Q57155) Pfam: Trypsin%3B PDZ domain (Aslo konwn as DHR or GLGF) no TMH signal peptide%3B~High confidence in function and specificity;gbkey=CDS;gene=mucD4;product=probable serine protease MucD;protein_id=CAL96290.1;transl_table=11
AM406670.1	EMBL	gene	4035014	4035511	.	+	.	ID=gene3735;Name=azo3675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3675
AM406670.1	EMBL	CDS	4035014	4035511	.	+	0	ID=cds3671;Parent=gene3735;Dbxref=EnsemblGenomes-Gn:azo3675,EnsemblGenomes-Tr:CAL96291,UniProtKB/TrEMBL:A1KBT5,NCBI_GP:CAL96291.1;Name=CAL96291.1;Note=Hypothetical protein predicted by Glimmer/Critica. Homology to bpp3105 of B. parapertussis of 20%25 (trembl|Q7W622). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96291.1;transl_table=11
AM406670.1	EMBL	gene	4035537	4036184	.	-	.	ID=gene3736;Name=nagL2;gbkey=Gene;gene=nagL2;gene_biotype=protein_coding;locus_tag=azo3676
AM406670.1	EMBL	CDS	4035537	4036184	.	-	0	ID=cds3672;Parent=gene3736;Dbxref=EnsemblGenomes-Gn:azo3676,EnsemblGenomes-Tr:CAL96292,GOA:A1KBT6,InterPro:IPR004045,InterPro:IPR005955,InterPro:IPR010987,InterPro:IPR012336,UniProtKB/TrEMBL:A1KBT6,NCBI_GP:CAL96292.1;Name=CAL96292.1;Note=Probable maleylpyruvate isomerase. Homology to nagL of Ralstonia spU of 50%25 (trembl|O86043) NagL is a reduced glutathione-dependent maleylpyruvate isomerase catalyzing the isomerization of maleypyruvate to fumarylpyruvate. InterPro: Glutathione S-transferase N terminus (IPR004045)%2C Glutathione S-transferase C terminus (IPR004046) Pfam: Glutathione S-transferase%2C N-terminal domaine no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=nagL2;product=probable maleylpyruvate isomerase;protein_id=CAL96292.1;transl_table=11
AM406670.1	EMBL	gene	4036298	4037326	.	-	.	ID=gene3737;Name=dctP6;gbkey=Gene;gene=dctP6;gene_biotype=protein_coding;locus_tag=azo3677
AM406670.1	EMBL	CDS	4036298	4037326	.	-	0	ID=cds3673;Parent=gene3737;Dbxref=EnsemblGenomes-Gn:azo3677,EnsemblGenomes-Tr:CAL96293,GOA:A1KBT7,InterPro:IPR018389,UniProtKB/TrEMBL:A1KBT7,NCBI_GP:CAL96293.1;Name=CAL96293.1;Note=TRAP-dicarboxylate transporter. Binds c4-dicarboxylates%3B part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 23%25 TRAP_transptDctP. Pfam:PF03480%3B SBP_bac_7%3B 1. TIGRFAMs:TIGR00787%3B dctP%3B 1. Signal peptide: present.%3B~Specificity unclear;gbkey=CDS;gene=dctP6;product=putative c4-dicarboxylate-binding periplasmic protein;protein_id=CAL96293.1;transl_table=11
AM406670.1	EMBL	gene	4037367	4038380	.	-	.	ID=gene3738;Name=azo3678;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3678
AM406670.1	EMBL	CDS	4037367	4038380	.	-	0	ID=cds3674;Parent=gene3738;Dbxref=EnsemblGenomes-Gn:azo3678,EnsemblGenomes-Tr:CAL96294,GOA:A1KBT8,InterPro:IPR002529,InterPro:IPR011234,UniProtKB/TrEMBL:A1KBT8,NCBI_GP:CAL96294.1;Name=CAL96294.1;Note=This family consists of fumarylacetoacetate (FAA) hydrolase%2C or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. Similar to TREMBL:Q9KSB3 (67%25 identity)%3B TREMBL:Q92LT4 (67%25 identity)%3B TREMBL:Q8EGD4 (61%25 identity). Pfam (PF01557): Fumarylacetoacetate (FAA) hydrolase family.%3B~Family membership;gbkey=CDS;product=fumarylacetoacetate hydrolase family protein;protein_id=CAL96294.1;transl_table=11
AM406670.1	EMBL	gene	4038439	4038972	.	-	.	ID=gene3739;Name=azo3679;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3679
AM406670.1	EMBL	CDS	4038439	4038972	.	-	0	ID=cds3675;Parent=gene3739;Dbxref=EnsemblGenomes-Gn:azo3679,EnsemblGenomes-Tr:CAL96295,GOA:A1KBT9,InterPro:IPR000486,InterPro:IPR004360,InterPro:IPR029068,UniProtKB/TrEMBL:A1KBT9,NCBI_GP:CAL96295.1;Name=CAL96295.1;Note=Glyoxalase I (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. Similar to trembl|Q89SS0 (63%25). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily%3B~Family membership;gbkey=CDS;product=glyoxalase-family protein;protein_id=CAL96295.1;transl_table=11
AM406670.1	EMBL	gene	4038995	4039219	.	-	.	ID=gene3740;Name=azo3680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3680
AM406670.1	EMBL	CDS	4038995	4039219	.	-	0	ID=cds3676;Parent=gene3740;Dbxref=EnsemblGenomes-Gn:azo3680,EnsemblGenomes-Tr:CAL96296,InterPro:IPR021233,UniProtKB/TrEMBL:A1KBU0,NCBI_GP:CAL96296.1;Name=CAL96296.1;Note=Conserved hypothetical protein. Homology to RS01748 of R.solanacearum of 59%25 (trembl:Q8XRY0). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96296.1;transl_table=11
AM406670.1	EMBL	gene	4039232	4040899	.	-	.	ID=gene3741;Name=mhpA;gbkey=Gene;gene=mhpA;gene_biotype=protein_coding;locus_tag=azo3681
AM406670.1	EMBL	CDS	4039232	4040899	.	-	0	ID=cds3677;Parent=gene3741;Dbxref=EnsemblGenomes-Gn:azo3681,EnsemblGenomes-Tr:CAL96297,GOA:A1KBU1,InterPro:IPR002938,InterPro:IPR003042,UniProtKB/TrEMBL:A1KBU1,NCBI_GP:CAL96297.1;Name=CAL96297.1;Note=Putative oxygenase. 3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-)%2C InterPro: Aromatic-ring hydroxylase (flavoprotein monooxygenase)%3B~Specificity unclear;gbkey=CDS;gene=mhpA;product=3-(3-hydroxy-phenyl)propionate hydroxylase%2Cputative;protein_id=CAL96297.1;transl_table=11
AM406670.1	EMBL	gene	4040974	4041939	.	-	.	ID=gene3742;Name=azo3682;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3682
AM406670.1	EMBL	CDS	4040974	4041939	.	-	0	ID=cds3678;Parent=gene3742;Dbxref=EnsemblGenomes-Gn:azo3682,EnsemblGenomes-Tr:CAL96298,GOA:A1KBU2,InterPro:IPR001279,UniProtKB/TrEMBL:A1KBU2,NCBI_GP:CAL96298.1;Name=CAL96298.1;Note=Beta-lactamase II precursor (EC 3.5.2.6) (Penicillinase) (Cephalosporinase). Can hydrolyze carbapenem compounds. InterPro:IPR001279-Metallo-beta-lactamase superfamily TREMBL:Q8XRX8-72%25 identity TREMBL:Q7VUG6- 62%25 Pfam:PF00753-LactamaseB%2C Ribosomal proteinS6e%2CThiC family TIGRFAM:TIGR00010- TatD/hisF family TMHMM predicted transmembrane helix. mobB: molybdopterin-guanine dinucleotide%3B~High confidence in function and specificity;gbkey=CDS;product=putative cyclase;protein_id=CAL96298.1;transl_table=11
AM406670.1	EMBL	gene	4042117	4042941	.	+	.	ID=gene3743;Name=gylR;gbkey=Gene;gene=gylR;gene_biotype=protein_coding;locus_tag=azo3683
AM406670.1	EMBL	CDS	4042117	4042941	.	+	0	ID=cds3679;Parent=gene3743;Dbxref=EnsemblGenomes-Gn:azo3683,EnsemblGenomes-Tr:CAL96299,GOA:A1KBU3,InterPro:IPR005471,InterPro:IPR011991,InterPro:IPR014757,InterPro:IPR029016,UniProtKB/TrEMBL:A1KBU3,NCBI_GP:CAL96299.1;Name=CAL96299.1;Note=Putative transcriptional regulator iclR-family%2C%3B~Family membership;gbkey=CDS;gene=gylR;product=putative transcriptional regulator iclR-family;protein_id=CAL96299.1;transl_table=11
AM406670.1	EMBL	gene	4043053	4043889	.	+	.	ID=gene3744;Name=azo3684;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3684
AM406670.1	EMBL	CDS	4043053	4043889	.	+	0	ID=cds3680;Parent=gene3744;Dbxref=EnsemblGenomes-Gn:azo3684,EnsemblGenomes-Tr:CAL96300,UniProtKB/TrEMBL:A1KBU4,NCBI_GP:CAL96300.1;Name=CAL96300.1;Note=Putative periplasmic binding protein-related protein.This family includes several of which are involved in iron transport. 24%25%3B~Function unclear;gbkey=CDS;product=putative periplasmic binding protein;protein_id=CAL96300.1;transl_table=11
AM406670.1	EMBL	gene	4043889	4047515	.	+	.	ID=gene3745;Name=azo3685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3685
AM406670.1	EMBL	CDS	4043889	4047515	.	+	0	ID=cds3681;Parent=gene3745;Dbxref=EnsemblGenomes-Gn:azo3685,EnsemblGenomes-Tr:CAL96301,GOA:A1KBU5,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,InterPro:IPR011006,InterPro:IPR013656,UniProtKB/TrEMBL:A1KBU5,NCBI_GP:CAL96301.1;Name=CAL96301.1;Note=Putative hybrid sensor and regulator protein%2C MmoS) InterPro: IPR003594%3B ATPbind_ATPase. IPR005467%3B His_kinase. IPR003661%3B His_kinA_N. IPR008207%3B Hpt. IPR001610%3B PAC. IPR000700%3B PAS-assoc_C. IPR000014%3B PAS_domain. IPR001789%3B Response_reg. Pfam: PF02518%3B HATPase_c. PF00512%3B HisKA. PF00785%3B PAC. PF00989%3B PAS. PF00072%3B Response_reg. SMART: SM00387%3B HATPase_c. SM00388%3B HisKA. SM00073%3B HPT. SM00086%3B PAC. SM00091%3B PAS. SM00448%3B REC. TIGRFAM: TIGR00229%3B sensory_box. TMHMM reporting 2 transmembrane helices.%3B~Family membership;gbkey=CDS;product=putative hybrid sensor and regulator protein;protein_id=CAL96301.1;transl_table=11
AM406670.1	EMBL	gene	4047603	4048715	.	+	.	ID=gene3746;Name=rpfG;gbkey=Gene;gene=rpfG;gene_biotype=protein_coding;locus_tag=azo3686
AM406670.1	EMBL	CDS	4047603	4048715	.	+	0	ID=cds3682;Parent=gene3746;Dbxref=EnsemblGenomes-Gn:azo3686,EnsemblGenomes-Tr:CAL96302,GOA:A1KBU6,InterPro:IPR001789,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR011006,UniProtKB/TrEMBL:A1KBU6,NCBI_GP:CAL96302.1;Name=CAL96302.1;Note=Probable response regulator%2C HD. IPR003607%3B Met_phsphohydro. IPR001789%3B Response_reg. IPR008328%3B Res_reg_HDGYP. Pfam: PF01966%3B HD. PF00072%3B Response_reg. SMART: SM00471%3B HDc. SM00448%3B REC.%3B~Specificity unclear;gbkey=CDS;gene=rpfG;product=probable response regulator;protein_id=CAL96302.1;transl_table=11
AM406670.1	EMBL	gene	4048737	4049372	.	-	.	ID=gene3747;Name=cc43;gbkey=Gene;gene=cc43;gene_biotype=protein_coding;locus_tag=azo3687
AM406670.1	EMBL	CDS	4048737	4049372	.	-	0	ID=cds3683;Parent=gene3747;Dbxref=EnsemblGenomes-Gn:azo3687,EnsemblGenomes-Tr:CAL96303,GOA:A1KBU7,InterPro:IPR003088,InterPro:IPR009056,InterPro:IPR024167,UniProtKB/TrEMBL:A1KBU7,NCBI_GP:CAL96303.1;Name=CAL96303.1;Note=Putative cytochrome c4. Homology to cc4 of A. vinelandii of 29%25 (sprot|CYC4_AZOVI). Diheme%2C high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems. Pfam: cytochrome C signal peptide no TMHs;gbkey=CDS;gene=cc43;product=putative cytochrome c4;protein_id=CAL96303.1;transl_table=11
AM406670.1	EMBL	gene	4049428	4049787	.	-	.	ID=gene3748;Name=azo3688;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3688
AM406670.1	EMBL	CDS	4049428	4049787	.	-	0	ID=cds3684;Parent=gene3748;Dbxref=EnsemblGenomes-Gn:azo3688,EnsemblGenomes-Tr:CAL96304,InterPro:IPR008579,InterPro:IPR011051,InterPro:IPR014710,UniProtKB/TrEMBL:A1KBU8,NCBI_GP:CAL96304.1;Name=CAL96304.1;Note=Conserved hypothetical protein. Homology to pspto0091 of P. syringae of 35%25 (trembl|Q88BC6). Pfam: DUF861. This family consists of several proteins which seem to be specific to plants and bacteria. The function of this family is unknown. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96304.1;transl_table=11
AM406670.1	EMBL	gene	4049799	4050842	.	-	.	ID=gene3749;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=azo3689
AM406670.1	EMBL	CDS	4049799	4050842	.	-	0	ID=cds3685;Parent=gene3749;Dbxref=EnsemblGenomes-Gn:azo3689,EnsemblGenomes-Tr:CAL96305,GOA:A1KBU9,InterPro:IPR003170,InterPro:IPR006094,InterPro:IPR011601,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,NCBI_GP:CAL96305.1;Name=CAL96305.1;Note=UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) (UDP-N- acetylmuramate dehydrogenase). Cell wall formation (By similarity). InterPro: UDP-N-acetylenolpyruvoylglucosamine reductase murB: UDP-N-acetylenolpyruvoylglucosamine%3B~High confidence in function and specificity;gbkey=CDS;gene=murB;product=UDP-N-acetylmuramate dehydrogenase;protein_id=CAL96305.1;transl_table=11
AM406670.1	EMBL	gene	4050942	4051349	.	-	.	ID=gene3750;Name=azo3690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3690
AM406670.1	EMBL	CDS	4050942	4051349	.	-	0	ID=cds3686;Parent=gene3750;Dbxref=EnsemblGenomes-Gn:azo3690,EnsemblGenomes-Tr:CAL96306,InterPro:IPR007896,UniProtKB/TrEMBL:A1KBV0,NCBI_GP:CAL96306.1;Name=CAL96306.1;Note=Conserved hypothetical membrane protein. Homology to atu1643 of A. tymefaciens of 39%25 (trembl|Q8UEW1(SRS)). Pfam: Bacterial transmembrane pair family. This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins. signal peptide. 3 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96306.1;transl_table=11
AM406670.1	EMBL	gene	4051624	4053654	.	-	.	ID=gene3751;Name=azo3691;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3691
AM406670.1	EMBL	CDS	4051624	4053654	.	-	0	ID=cds3687;Parent=gene3751;Dbxref=EnsemblGenomes-Gn:azo3691,EnsemblGenomes-Tr:CAL96307,GOA:A1KBV1,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR029151,UniProtKB/TrEMBL:A1KBV1,NCBI_GP:CAL96307.1;Name=CAL96307.1;Note=Putative methyl-accepting chemotaxis protein%2CChmtaxis_transd. IPR003660%3B HAMP. Pfam: PF00672%3B HAMP. PF00015%3B MCPsignal. SMART: SM00304%3B HAMP. SM00283%3B MA. Signal P reporting signal peptide. TMHMM reporting 2 transmembrane helices.%3B~Family membership;gbkey=CDS;product=putative methyl-accepting chemotaxis transducer;protein_id=CAL96307.1;transl_table=11
AM406670.1	EMBL	gene	4053784	4054350	.	+	.	ID=gene3752;Name=azo3692;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3692
AM406670.1	EMBL	CDS	4053784	4054350	.	+	0	ID=cds3688;Parent=gene3752;Dbxref=EnsemblGenomes-Gn:azo3692,EnsemblGenomes-Tr:CAL96308,GOA:A1KBV2,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:A1KBV2,NCBI_GP:CAL96308.1;Name=CAL96308.1;Note=Putative N-acetyltransferase%2C51%25 Identity to TrEMBl%3BQ7WQB1%2C54%25 Identity to TrEMBL%3BQ63LT2%2CQ7WCA7. Has PF00583%2C Acetyltransferase (GNAT) family%3BIPR000182%2CGCN5acetyl_trans%3B This family contains proteins with N-acetyltransferase functions. Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs)%2C which catalyze the transfer of an acetyl group from acetyl-CoA to the lysine E -amino groups on the N-terminal tails of histones. Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin%2C histones tend to be hyperacetylated%2C whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs)%3B the MYST (for `MOZ%2C Ybf2/Sas3%2CSas2 and Tip60)-related HATs%3B p300/CBP HATs%3B the general transcription factor HATs%2C which include the TFIID subunit TAF250%3B and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1%2C the elongator complex subunit Elp3%2C the mediator-complex subunit Nut1%2C and Hpa2;gbkey=CDS;product=putative N-acetyltransferase;protein_id=CAL96308.1;transl_table=11
AM406670.1	EMBL	gene	4054347	4055573	.	+	.	ID=gene3753;Name=azo3693;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3693
AM406670.1	EMBL	CDS	4054347	4055573	.	+	0	ID=cds3689;Parent=gene3753;Dbxref=EnsemblGenomes-Gn:azo3693,EnsemblGenomes-Tr:CAL96309,GOA:A1KBV3,InterPro:IPR011701,InterPro:IPR016196,UniProtKB/TrEMBL:A1KBV3,NCBI_GP:CAL96309.1;Name=CAL96309.1;Note=Similar to hypothetical integral membrane transport protein yidY (MFS family). Signal peptide containing non secretory protein. With 12 putative transmembrane helices. General transport of carbohydrates %2C amino acids%2C and other small molecules.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96309.1;transl_table=11
AM406670.1	EMBL	gene	4055667	4055852	.	+	.	ID=gene3754;Name=azo3694;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3694
AM406670.1	EMBL	CDS	4055667	4055852	.	+	0	ID=cds3690;Parent=gene3754;Dbxref=EnsemblGenomes-Gn:azo3694,EnsemblGenomes-Tr:CAL96310,UniProtKB/TrEMBL:A1KBV4,NCBI_GP:CAL96310.1;Name=CAL96310.1;Note=Hypothetical secreted protein. No good homology to the data bank. Has Signal Peptide.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL96310.1;transl_table=11
AM406670.1	EMBL	gene	4056007	4057344	.	-	.	ID=gene3755;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;locus_tag=azo3695
AM406670.1	EMBL	CDS	4056007	4057344	.	-	0	ID=cds3691;Parent=gene3755;Dbxref=EnsemblGenomes-Gn:azo3695,EnsemblGenomes-Tr:CAL96311,GOA:A1KBV5,InterPro:IPR001412,InterPro:IPR002305,InterPro:IPR002306,InterPro:IPR014729,InterPro:IPR024109,UniProtKB/TrEMBL:A1KBV5,NCBI_GP:CAL96311.1;Name=CAL96311.1;Note=Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tryptophan--tRNA ligase) (TrpRS).%3B~High confidence in function and specificity;gbkey=CDS;gene=trpS;product=TrpS protein;protein_id=CAL96311.1;transl_table=11
AM406670.1	EMBL	gene	4057400	4057786	.	-	.	ID=gene3756;Name=azo3696;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3696
AM406670.1	EMBL	CDS	4057400	4057786	.	-	0	ID=cds3692;Parent=gene3756;Dbxref=EnsemblGenomes-Gn:azo3696,EnsemblGenomes-Tr:CAL96312,UniProtKB/TrEMBL:A1KBV6,NCBI_GP:CAL96312.1;Name=CAL96312.1;Note=Conserved hypothetical secreted protein. Homology to bb3068 of B. bronchiseptica of 31%25 (trembl|Q7WHY8(SRS)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96312.1;transl_table=11
AM406670.1	EMBL	gene	4057811	4058158	.	-	.	ID=gene3757;Name=azo3697;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3697
AM406670.1	EMBL	CDS	4057811	4058158	.	-	0	ID=cds3693;Parent=gene3757;Dbxref=EnsemblGenomes-Gn:azo3697,EnsemblGenomes-Tr:CAL96313,UniProtKB/TrEMBL:A1KBV7,NCBI_GP:CAL96313.1;Name=CAL96313.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Has signal peptide.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL96313.1;transl_table=11
AM406670.1	EMBL	gene	4058405	4058953	.	+	.	ID=gene3758;Name=azo3698;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3698
AM406670.1	EMBL	CDS	4058405	4058953	.	+	0	ID=cds3694;Parent=gene3758;Dbxref=EnsemblGenomes-Gn:azo3698,EnsemblGenomes-Tr:CAL96314,UniProtKB/TrEMBL:A1KBV8,NCBI_GP:CAL96314.1;Name=CAL96314.1;Note=Conserved hypothetical protein. Homology to Daro03001371 of Dechloromonas aromatica of 43%25 (gi|53730748|ref|ZP_00348943.1|(NBCI ENTREZ)). No doamins predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96314.1;transl_table=11
AM406670.1	EMBL	gene	4058961	4060172	.	+	.	ID=gene3759;Name=azo3699;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3699
AM406670.1	EMBL	CDS	4058961	4060172	.	+	0	ID=cds3695;Parent=gene3759;Dbxref=EnsemblGenomes-Gn:azo3699,EnsemblGenomes-Tr:CAL96315,InterPro:IPR008302,UniProtKB/TrEMBL:A1KBV9,NCBI_GP:CAL96315.1;Name=CAL96315.1;Note=Conserved hypothetical protein%2C 38%25 identity(51%25 similarity) to TrEMBL%3BQ8KAU5. TrEMBL%3B Q6MRD6(59%25 identity). Has PF07075%2C Protein of unknown function (DUF1343)%3BIPR008302%2C UCP016719%3B This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.There are currently no experimental data for members of this group or their homologues%2C nor do they exhibit features indicative of any function.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96315.1;transl_table=11
AM406670.1	EMBL	gene	4060198	4060578	.	-	.	ID=gene3760;Name=trxC2;gbkey=Gene;gene=trxC2;gene_biotype=protein_coding;locus_tag=azo3700
AM406670.1	EMBL	CDS	4060198	4060578	.	-	0	ID=cds3696;Parent=gene3760;Dbxref=EnsemblGenomes-Gn:azo3700,EnsemblGenomes-Tr:CAL96316,GOA:A1KBW0,InterPro:IPR005746,InterPro:IPR012336,InterPro:IPR013766,InterPro:IPR017937,UniProtKB/TrEMBL:A1KBW0,NCBI_GP:CAL96316.1;Name=CAL96316.1;Note=Probable thioredoxin-disulfide reductase. Homology to trxC3 (THI3_CORNE) of C. nephridii of 43%25. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions. Pfam: Thioredoxin no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=trxC2;product=probable thioredoxin-disulfide reductase;protein_id=CAL96316.1;transl_table=11
AM406670.1	EMBL	gene	4060726	4061031	.	+	.	ID=gene3761;Name=azo3701;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3701
AM406670.1	EMBL	CDS	4060726	4061031	.	+	0	ID=cds3697;Parent=gene3761;Dbxref=EnsemblGenomes-Gn:azo3701,EnsemblGenomes-Tr:CAL96317,InterPro:IPR007138,InterPro:IPR011008,UniProtKB/TrEMBL:A1KBW1,NCBI_GP:CAL96317.1;Name=CAL96317.1;Note=Conserved hypothetical protein. Homology to bll7423 of B. japonicum of 53%25 (trembl|Q89DL6). Pfam: Antibiotic biosynthesis monooxygenase. no TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96317.1;transl_table=11
AM406670.1	EMBL	gene	4061111	4061821	.	+	.	ID=gene3762;Name=azo3702;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3702
AM406670.1	EMBL	CDS	4061111	4061821	.	+	0	ID=cds3698;Parent=gene3762;Dbxref=EnsemblGenomes-Gn:azo3702,EnsemblGenomes-Tr:CAL96318,GOA:A1KBW2,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:A1KBW2,NCBI_GP:CAL96318.1;Name=CAL96318.1;Note=conserved hypothetical protein. Homology to Avin02001428 of Azotobacter vinelandii of 54%25 (gi|53612536|ref|ZP_00091632.2|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96318.1;transl_table=11
AM406670.1	EMBL	gene	4061834	4062295	.	-	.	ID=gene3763;Name=azo3703;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3703
AM406670.1	EMBL	CDS	4061834	4062295	.	-	0	ID=cds3699;Parent=gene3763;Dbxref=EnsemblGenomes-Gn:azo3703,EnsemblGenomes-Tr:CAL96319,InterPro:IPR007318,UniProtKB/TrEMBL:A1KBW3,NCBI_GP:CAL96319.1;Name=CAL96319.1;Note=Conserved hypothetical membrane protein. Homology to PM2013 of P. multocida of 44%25 (tremble:Q9CJJ4). probable signal peptide. probable 2 TMHS%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96319.1;transl_table=11
AM406670.1	EMBL	gene	4062391	4063305	.	+	.	ID=gene3764;Name=azo3704;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3704
AM406670.1	EMBL	CDS	4062391	4063305	.	+	0	ID=cds3700;Parent=gene3764;Dbxref=EnsemblGenomes-Gn:azo3704,EnsemblGenomes-Tr:CAL96320,GOA:A1KBW4,InterPro:IPR008901,UniProtKB/TrEMBL:A1KBW4,NCBI_GP:CAL96320.1;Name=CAL96320.1;Note=Hypothetical membrane protein. No homology of the entire protein to the data bank. Has PF05875%3BAlkaline phytoceramidase (aPHC):This family consists of several eukaryotic Alkaline phytoceramidase (aPHC) sequences. Ceramidases are enzymes involved in regulating cellular levels of ceramides%2C sphingoid bases%2C and their phosphates. Alkaline phytoceramidase (aPHC) is responsible for the hydrolysis of phytoceramide. No signal peptide. 6 TMHs.;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL96320.1;transl_table=11
AM406670.1	EMBL	gene	4063257	4064321	.	-	.	ID=gene3765;Name=gapR;gbkey=Gene;gene=gapR;gene_biotype=protein_coding;locus_tag=azo3705
AM406670.1	EMBL	CDS	4063257	4064321	.	-	0	ID=cds3701;Parent=gene3765;Dbxref=EnsemblGenomes-Gn:azo3705,EnsemblGenomes-Tr:CAL96321,GOA:A1KBW5,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,InterPro:IPR025628,InterPro:IPR029062,UniProtKB/TrEMBL:A1KBW5,NCBI_GP:CAL96321.1;Name=CAL96321.1;Note=Putative AraC family transcriptional regulator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=gapR;product=putative AraC family transcriptional regulator;protein_id=CAL96321.1;transl_table=11
AM406670.1	EMBL	gene	4064470	4065540	.	+	.	ID=gene3766;Name=azo3706;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3706
AM406670.1	EMBL	CDS	4064470	4065540	.	+	0	ID=cds3702;Parent=gene3766;Dbxref=EnsemblGenomes-Gn:azo3706,EnsemblGenomes-Tr:CAL96322,InterPro:IPR011991,InterPro:IPR025714,InterPro:IPR029063,UniProtKB/TrEMBL:A1KBW6,NCBI_GP:CAL96322.1;Name=CAL96322.1;Note=Similar to TREMBL:Q89RW7 (50%25 identity%2C64%25 similarity)%3B TREMBL:Q88IS2 (49%25 identity). InterPro (IPR000051)%3B SAM (and some other nucleotide) binding motif.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96322.1;transl_table=11
AM406670.1	EMBL	gene	4065556	4065882	.	-	.	ID=gene3767;Name=azo3707;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3707
AM406670.1	EMBL	CDS	4065556	4065882	.	-	0	ID=cds3703;Parent=gene3767;Dbxref=EnsemblGenomes-Gn:azo3707,EnsemblGenomes-Tr:CAL96323,InterPro:IPR007138,InterPro:IPR011008,UniProtKB/TrEMBL:A1KBW7,NCBI_GP:CAL96323.1;Name=CAL96323.1;Note=Conserved hypothetical protein. Homology to sty1393 of S. typhi of 34%25 (trembl|Q8Z792). Pfam: Antibiotic biosynthesis monooxygenase. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96323.1;transl_table=11
AM406670.1	EMBL	gene	4065983	4066393	.	-	.	ID=gene3768;Name=azo3708;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3708
AM406670.1	EMBL	CDS	4065983	4066393	.	-	0	ID=cds3704;Parent=gene3768;Dbxref=EnsemblGenomes-Gn:azo3708,EnsemblGenomes-Tr:CAL96324,GOA:A1KBW8,InterPro:IPR025870,InterPro:IPR029068,UniProtKB/TrEMBL:A1KBW8,NCBI_GP:CAL96324.1;Name=CAL96324.1;Note=Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates. Cleavage of aromatic rings is one of the most important function of dioxygenases. Similar to trembl|Q7WJ14 (50%25). Pfam (PF00903): Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily%3B~Family membership;gbkey=CDS;product=dioxygenase-family protein;protein_id=CAL96324.1;transl_table=11
AM406670.1	EMBL	gene	4066490	4066942	.	-	.	ID=gene3769;Name=azo3709;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3709
AM406670.1	EMBL	CDS	4066490	4066942	.	-	0	ID=cds3705;Parent=gene3769;Dbxref=EnsemblGenomes-Gn:azo3709,EnsemblGenomes-Tr:CAL96325,GOA:A1KBW9,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:A1KBW9,NCBI_GP:CAL96325.1;Name=CAL96325.1;Note=Family membership%3B~ORF8;gbkey=CDS;product=hypothetical protein;protein_id=CAL96325.1;transl_table=11
AM406670.1	EMBL	gene	4067068	4067532	.	-	.	ID=gene3770;Name=azo3710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3710
AM406670.1	EMBL	CDS	4067068	4067532	.	-	0	ID=cds3706;Parent=gene3770;Dbxref=EnsemblGenomes-Gn:azo3710,EnsemblGenomes-Tr:CAL96326,GOA:A1KBX0,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:A1KBX0,NCBI_GP:CAL96326.1;Name=CAL96326.1;Note=Conserved hypothetical transferase. Homology to the IAA acetyltransferase of A. brasilense of 37%25 (sprot|IAAT_AZOBR). The IAA acetyltransferase participates in the tryptophan-dependent indole-3-acetic acid production%2C which is a phytohormone released by A.brasilense. Interpro: GCN5-related N-acetyltransferase (IPR000182). Pfam: Acetyltransferase (GNAT) family. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical acetyltransferase;protein_id=CAL96326.1;transl_table=11
AM406670.1	EMBL	gene	4067656	4068402	.	-	.	ID=gene3771;Name=azo3711;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3711
AM406670.1	EMBL	CDS	4067656	4068402	.	-	0	ID=cds3707;Parent=gene3771;Dbxref=EnsemblGenomes-Gn:azo3711,EnsemblGenomes-Tr:CAL96327,InterPro:IPR017031,InterPro:IPR029063,UniProtKB/TrEMBL:A1KBX1,NCBI_GP:CAL96327.1;Name=CAL96327.1;Note=Similar to SWISSPROT:P39367 (68%25 identity)%2CTREMBL:Q8Z1C8 (66%25 identity).;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96327.1;transl_table=11
AM406670.1	EMBL	gene	4068452	4068979	.	-	.	ID=gene3772;Name=azo3712;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3712
AM406670.1	EMBL	CDS	4068452	4068979	.	-	0	ID=cds3708;Parent=gene3772;Dbxref=EnsemblGenomes-Gn:azo3712,EnsemblGenomes-Tr:CAL96328,GOA:A1KBX2,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR029401,UniProtKB/TrEMBL:A1KBX2,NCBI_GP:CAL96328.1;Name=CAL96328.1;Note=conserved hypothetical protein. Homology to Raeut03002407 of Ralstonia eutropha of 48%25 (gi|46132577|ref|ZP_00171131.2|(NBCI ENTREZ)). Pfam: NUDIX domain. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96328.1;transl_table=11
AM406670.1	EMBL	gene	4069022	4069390	.	-	.	ID=gene3773;Name=bleO;gbkey=Gene;gene=bleO;gene_biotype=protein_coding;locus_tag=azo3713
AM406670.1	EMBL	CDS	4069022	4069390	.	-	0	ID=cds3709;Parent=gene3773;Dbxref=EnsemblGenomes-Gn:azo3713,EnsemblGenomes-Tr:CAL96329,InterPro:IPR025870,InterPro:IPR029068,UniProtKB/TrEMBL:A1KBX3,NCBI_GP:CAL96329.1;Name=CAL96329.1;Note=Bleomycin (Blm) is a glycopeptide antibiotic produced naturally by actinomycetes. It is a strong DNA-cutting agent and thus finds use as a potent anti-cancer drug. Actinomycetes have developed a defence mechanism against this lethal compound%2C producing a protein that confers resistance to Blm through drug sequestering.Putative Bleomycin resistance protein%2C%3B~Family membership;gbkey=CDS;gene=bleO;product=putative bleomycin resistance protein;protein_id=CAL96329.1;transl_table=11
AM406670.1	EMBL	gene	4069873	4070424	.	-	.	ID=gene3774;Name=azo3714;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3714
AM406670.1	EMBL	CDS	4069873	4070424	.	-	0	ID=cds3710;Parent=gene3774;Dbxref=EnsemblGenomes-Gn:azo3714,EnsemblGenomes-Tr:CAL96330,GOA:A1KBX4,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:A1KBX4,NCBI_GP:CAL96330.1;Name=CAL96330.1;Note=Probable Acetyltransferase protein. Has weak homology with hits in the database%2C TrEMBL%3BQ7N1H0(56%25 Identity). Has PF00583%2C Acetyltransferase (GNAT) family%3B IPR000182%2C GCN5acetyl_trans%3B This family contains proteins with N-acetyltransferase functions.%3BHistone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs)%2C which catalyze the transfer of an acetyl group from acetyl-CoA to the lysine E -amino groups on the N-terminal tails of histones. Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin%2C histones tend to be hyperacetylated%2C whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs)%3B the MYST (for `MOZ%2C Ybf2/Sas3%2CSas2 and Tip60)-related HATs%3B p300/CBP HATs%3B the general transcription factor HATs%2C which include the TFIID subunit TAF250%3B and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1%2C the elongator complex subunit Elp3%2C the mediator-complex subunit Nut1%2C and Hpa2%3B~Family membership;gbkey=CDS;product=probable Acetyltransferase protein.;protein_id=CAL96330.1;transl_table=11
AM406670.1	EMBL	gene	4070525	4070932	.	-	.	ID=gene3775;Name=azo3715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3715
AM406670.1	EMBL	CDS	4070525	4070932	.	-	0	ID=cds3711;Parent=gene3775;Dbxref=EnsemblGenomes-Gn:azo3715,EnsemblGenomes-Tr:CAL96331,UniProtKB/TrEMBL:A1KBX5,NCBI_GP:CAL96331.1;Name=CAL96331.1;Note=Hypothetical membrane protein. Homology to an orf of E. coli of 29%25 (trembl|Q8VNQ4). no domains predricted. no signal peptide. 3 TMHs;gbkey=CDS;product=hypothetical membrane protein;protein_id=CAL96331.1;transl_table=11
AM406670.1	EMBL	gene	4071043	4071537	.	-	.	ID=gene3776;Name=azo3716;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3716
AM406670.1	EMBL	CDS	4071043	4071537	.	-	0	ID=cds3712;Parent=gene3776;Dbxref=EnsemblGenomes-Gn:azo3716,EnsemblGenomes-Tr:CAL96332,InterPro:IPR025870,InterPro:IPR029068,UniProtKB/TrEMBL:A1KBX6,NCBI_GP:CAL96332.1;Name=CAL96332.1;gbkey=CDS;inference=nucleotide motif:Gismo;product=hypothetical protein;protein_id=CAL96332.1;transl_table=11
AM406670.1	EMBL	gene	4071620	4071769	.	-	.	ID=gene3777;Name=azo3717;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3717
AM406670.1	EMBL	CDS	4071620	4071769	.	-	0	ID=cds3713;Parent=gene3777;Dbxref=EnsemblGenomes-Gn:azo3717,EnsemblGenomes-Tr:CAL96333,UniProtKB/TrEMBL:A1KBX7,NCBI_GP:CAL96333.1;Name=CAL96333.1;Note=Region start changed from 4071796 to 4071769 (-27 bases)%2C %2C Changed start from att to next atg;gbkey=CDS;product=hypothetical protein;protein_id=CAL96333.1;transl_table=11
AM406670.1	EMBL	gene	4071881	4072303	.	-	.	ID=gene3778;Name=azo3718;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3718
AM406670.1	EMBL	CDS	4071881	4072303	.	-	0	ID=cds3714;Parent=gene3778;Dbxref=EnsemblGenomes-Gn:azo3718,EnsemblGenomes-Tr:CAL96334,InterPro:IPR025870,InterPro:IPR029068,UniProtKB/TrEMBL:A1KBX8,NCBI_GP:CAL96334.1;Name=CAL96334.1;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96334.1;transl_table=11
AM406670.1	EMBL	gene	4072411	4072626	.	-	.	ID=gene3779;Name=azo3719;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3719
AM406670.1	EMBL	CDS	4072411	4072626	.	-	0	ID=cds3715;Parent=gene3779;Dbxref=EnsemblGenomes-Gn:azo3719,EnsemblGenomes-Tr:CAL96335,InterPro:IPR018756,UniProtKB/TrEMBL:A1KBX9,NCBI_GP:CAL96335.1;Name=CAL96335.1;gbkey=CDS;inference=nucleotide motif:Gismo;product=hypothetical protein;protein_id=CAL96335.1;transl_table=11
AM406670.1	EMBL	gene	4072842	4073585	.	+	.	ID=gene3780;Name=azo3720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3720
AM406670.1	EMBL	CDS	4072842	4073585	.	+	0	ID=cds3716;Parent=gene3780;Dbxref=EnsemblGenomes-Gn:azo3720,EnsemblGenomes-Tr:CAL96336,GOA:A1KBY0,InterPro:IPR002525,UniProtKB/TrEMBL:A1KBY0,NCBI_GP:CAL96336.1;Name=CAL96336.1;Note=Putative truncated transposase for insertion sequence element IS1328. Required for the transposition of the insertion element (Potential). Homology only to the N-terminus.%3B~Family membership;gbkey=CDS;product=putative truncated transposase;protein_id=CAL96336.1;transl_table=11
AM406670.1	EMBL	gene	4073607	4073966	.	+	.	ID=gene3781;Name=azo3721;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3721
AM406670.1	EMBL	CDS	4073607	4073966	.	+	0	ID=cds3717;Parent=gene3781;Dbxref=EnsemblGenomes-Gn:azo3721,EnsemblGenomes-Tr:CAL96337,GOA:A1KBY1,InterPro:IPR003346,UniProtKB/TrEMBL:A1KBY1,NCBI_GP:CAL96337.1;Name=CAL96337.1;Note=Putative truncated transposase for insertion sequence element IS1328. Required for the transposition of the insertion element (Potential). InterPro: Transposase IS116/IS110/IS902 family. Homoloy only to the C-terminus.%3B~Specificity unclear;gbkey=CDS;product=putative truncated transposase;protein_id=CAL96337.1;transl_table=11
AM406670.1	EMBL	gene	4076853	4077803	.	-	.	ID=gene3782;Name=azo3722;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3722
AM406670.1	EMBL	CDS	4076853	4077803	.	-	0	ID=cds3718;Parent=gene3782;Dbxref=EnsemblGenomes-Gn:azo3722,EnsemblGenomes-Tr:CAL96338,InterPro:IPR025375,UniProtKB/TrEMBL:A1KBY2,NCBI_GP:CAL96338.1;Name=CAL96338.1;Note=Hypothetical protein%2C Has very weak or no homologs in the Database. Has No domains%2C repeats%2C motifs or features predicted above threshold score.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL96338.1;transl_table=11
AM406670.1	EMBL	gene	4077851	4078369	.	-	.	ID=gene3783;Name=azo3723;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3723
AM406670.1	EMBL	CDS	4077851	4078369	.	-	0	ID=cds3719;Parent=gene3783;Dbxref=EnsemblGenomes-Gn:azo3723,EnsemblGenomes-Tr:CAL96339,UniProtKB/TrEMBL:A1KBY3,NCBI_GP:CAL96339.1;Name=CAL96339.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96339.1;transl_table=11
AM406670.1	EMBL	gene	4078566	4079330	.	+	.	ID=gene3784;Name=azo3724;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3724
AM406670.1	EMBL	CDS	4078566	4079330	.	+	0	ID=cds3720;Parent=gene3784;Dbxref=EnsemblGenomes-Gn:azo3724,EnsemblGenomes-Tr:CAL96340,GOA:A1KBY4,InterPro:IPR002104,InterPro:IPR004107,InterPro:IPR011010,InterPro:IPR013762,UniProtKB/TrEMBL:A1KBY4,NCBI_GP:CAL96340.1;Name=CAL96340.1;Note=Truncated integrase/recombinase%2C probably Integrase/recombinase protein. 58%25 Identity to SProt%3BP62591%2CP62592. Has PF00589%2C Phage integrase family%3B IPR002104%2C Phage_integrase%3B Members of this family cleave DNA substrates by a series of staggered cuts%2C during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase (P06956) are Arg-173%2C His-289%2C Arg-292 and Tyr-324. Homology only to the N-terminus;gbkey=CDS;product=truncated integrase/recombinase;protein_id=CAL96340.1;transl_table=11
AM406670.1	EMBL	gene	4079327	4079527	.	+	.	ID=gene3785;Name=azo3725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3725
AM406670.1	EMBL	CDS	4079327	4079527	.	+	0	ID=cds3721;Parent=gene3785;Dbxref=EnsemblGenomes-Gn:azo3725,EnsemblGenomes-Tr:CAL96341,GOA:A1KBY5,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,UniProtKB/TrEMBL:A1KBY5,NCBI_GP:CAL96341.1;Name=CAL96341.1;Note=Putative truncated integrase/recombinase (E2 protein). PUTATIVE INTEGRASE BELIEVED TO BE INVOLVED IN INSERTIONS OF ANTIBIOTIC RESISTANCE GENES INTO PLASMIDS AND TRANSPOSONS. Homology only to the C-terminus.%3B~Family membership;gbkey=CDS;product=putative truncated integrase;protein_id=CAL96341.1;transl_table=11
AM406670.1	EMBL	gene	4079534	4083235	.	-	.	ID=gene3786;Name=metH;gbkey=Gene;gene=metH;gene_biotype=protein_coding;locus_tag=azo3726
AM406670.1	EMBL	CDS	4079534	4083235	.	-	0	ID=cds3722;Parent=gene3786;Dbxref=EnsemblGenomes-Gn:azo3726,EnsemblGenomes-Tr:CAL96342,GOA:A1KBY6,InterPro:IPR000489,InterPro:IPR003726,InterPro:IPR003759,InterPro:IPR004223,InterPro:IPR006158,InterPro:IPR011005,InterPro:IPR011822,UniProtKB/TrEMBL:A1KBY6,NCBI_GP:CAL96342.1;Name=CAL96342.1;Note=Probable methionine synthase. Homology to metH of E. coli of 62%25 (SWISSPROT:METH_SALTY) Catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. Terminal step in the de novo biosynthesis of methionine. InterPro: Homocysteine S-methyltransferase (IPR003726)%3B Cobalamin-dependent methionine sythase%2C B12 binding domain (IPR003759)%3B B12 binding domain (IPR003158)%3B vitamin B12 dependent methionine sythase activation domain (IPR004223) Pfam: Homosxteine S-methyltransferase%3B Vitamin B12 dependent methionine synthase activation domain%2C B12 binding domain no signal peptide no TMHs 1 HTH%3B~High confidence in function and specificity;gbkey=CDS;gene=metH;product=probable methionine synthase;protein_id=CAL96342.1;transl_table=11
AM406670.1	EMBL	gene	4083455	4084066	.	-	.	ID=gene3787;Name=azo3727;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3727
AM406670.1	EMBL	CDS	4083455	4084066	.	-	0	ID=cds3723;Parent=gene3787;Dbxref=EnsemblGenomes-Gn:azo3727,EnsemblGenomes-Tr:CAL96343,UniProtKB/TrEMBL:A1KBY7,NCBI_GP:CAL96343.1;Name=CAL96343.1;Note=Conserved hypothetical secreted protein. Homology to ebA3180 of Azoarcus sp. EbN1 of 57%25 (gi|56477224|ref|YP_158813.1|(NBCI ENTREZ)). No domains predicted Signal Peptide present. No TMH reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96343.1;transl_table=11
AM406670.1	EMBL	gene	4084068	4084556	.	-	.	ID=gene3788;Name=azo3728;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3728
AM406670.1	EMBL	CDS	4084068	4084556	.	-	0	ID=cds3724;Parent=gene3788;Dbxref=EnsemblGenomes-Gn:azo3728,EnsemblGenomes-Tr:CAL96344,GOA:A1KBY8,InterPro:IPR007450,UniProtKB/TrEMBL:A1KBY8,NCBI_GP:CAL96344.1;Name=CAL96344.1;Note=Probable lipoprotein%2C 58%25 similarity to TrEMBL:Q8XWT8 PROBABLE LIPOPROTEIN [RS01163] [Ralstonia solanacearum (Pseudomonas solanacearum)]. Has PF04355:IPR007450:SmpA / OmlA family%3BLipoprotein Bacterial outer membrane lipoprotein%2C possibly involved in in maintaining the structural integrity of the cell envelope [1]. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (OmpA). Signal peptide present. NO TMH reported present.%3B~Family membership;gbkey=CDS;product=probable lipoprotein;protein_id=CAL96344.1;transl_table=11
AM406670.1	EMBL	gene	4084668	4085792	.	+	.	ID=gene3789;Name=livK3;gbkey=Gene;gene=livK3;gene_biotype=protein_coding;locus_tag=azo3729
AM406670.1	EMBL	CDS	4084668	4085792	.	+	0	ID=cds3725;Parent=gene3789;Dbxref=EnsemblGenomes-Gn:azo3729,EnsemblGenomes-Tr:CAL96345,GOA:A1KBY9,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1KBY9,NCBI_GP:CAL96345.1;Name=CAL96345.1;Note=In enteric bacteria such as E. coli and Salmonella typhimurium%2C periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar to sprot|LIVK_ECOLI (31%25) and to trembl|Q7NV64 (54%25). Pfam (PF01094): Receptor family ligand binding region Pfam (PF00861): Ribosomal L18p/L5e family SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=livK3;product=probable leucine-specific binding protein;protein_id=CAL96345.1;transl_table=11
AM406670.1	EMBL	gene	4086174	4087289	.	+	.	ID=gene3790;Name=livK4;gbkey=Gene;gene=livK4;gene_biotype=protein_coding;locus_tag=azo3730
AM406670.1	EMBL	CDS	4086174	4087289	.	+	0	ID=cds3726;Parent=gene3790;Dbxref=EnsemblGenomes-Gn:azo3730,EnsemblGenomes-Tr:CAL96346,GOA:A1KBZ0,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1KBZ0,NCBI_GP:CAL96346.1;Name=CAL96346.1;Note=In enteric bacteria such as E. coli and Salmonella typhimurium%2C periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar to trembl|Q7NV64 (58%25) and to sprot|LIVK_ECOLI (33%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=livK4;product=probable leucine-specific binding protein;protein_id=CAL96346.1;transl_table=11
AM406670.1	EMBL	gene	4087402	4088334	.	+	.	ID=gene3791;Name=livH;gbkey=Gene;gene=livH;gene_biotype=protein_coding;locus_tag=azo3731
AM406670.1	EMBL	CDS	4087402	4088334	.	+	0	ID=cds3727;Parent=gene3791;Dbxref=EnsemblGenomes-Gn:azo3731,EnsemblGenomes-Tr:CAL96347,GOA:A1KBZ1,InterPro:IPR001851,UniProtKB/TrEMBL:A1KBZ1,NCBI_GP:CAL96347.1;Name=CAL96347.1;Note=Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar trembl|Q7NXX3 (60%25)%2C to sprot|BRAD_PSEAE (47%25) and to sprot|LIVH_ECOLI (44%25). Pfam (PF02653): Branched-chain amino acid transport system / permease component TMHMM reporting seven Tmhelix. gntP: gluconate transporter%3B~Specificity unclear;gbkey=CDS;gene=livH;product=ABC transporter permease protein;protein_id=CAL96347.1;transl_table=11
AM406670.1	EMBL	gene	4088347	4089444	.	+	.	ID=gene3792;Name=livM5;gbkey=Gene;gene=livM5;gene_biotype=protein_coding;locus_tag=azo3732
AM406670.1	EMBL	CDS	4088347	4089444	.	+	0	ID=cds3728;Parent=gene3792;Dbxref=EnsemblGenomes-Gn:azo3732,EnsemblGenomes-Tr:CAL96348,GOA:A1KBZ2,InterPro:IPR001851,UniProtKB/TrEMBL:A1KBZ2,NCBI_GP:CAL96348.1;Name=CAL96348.1;Note=Putative branched-chain amino acid transport permease. Homology to livM of S. typhimurium of 44%25. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. no signal peptide probable 8 TMHs%3B~Specificity unclear;gbkey=CDS;gene=livM5;product=putative branched-chain amino acid transport permease;protein_id=CAL96348.1;transl_table=11
AM406670.1	EMBL	gene	4089441	4090214	.	+	.	ID=gene3793;Name=livG2;gbkey=Gene;gene=livG2;gene_biotype=protein_coding;locus_tag=azo3733
AM406670.1	EMBL	CDS	4089441	4090214	.	+	0	ID=cds3729;Parent=gene3793;Dbxref=EnsemblGenomes-Gn:azo3733,EnsemblGenomes-Tr:CAL96349,GOA:A1KBZ3,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KBZ3,NCBI_GP:CAL96349.1;Name=CAL96349.1;Note=Probable high-affinity branched-chain amino acid transport ATP-binding protein BraF. ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2Cresponsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. BraF is a COMPONENT OF THE HIGH AFFINITY LEUCINE ISOLEUCINE VALINE TRANSPORT SYSTEM (LIV-I) WHICH IS OPERATIVE WITHOUT NA(+) AND IS SPECIFIC FOR ALANINE AND THREONINE IN ADDITION TO BRANCHED-CHAIN AMINO ACIDS. Similar to trembl|Q7NXX1 (67%25)%2C to sprot|BRAF_PSEAE (45%25) and to sprot|LIVG_ECOLI (44%25). Pfam (PF00005): ABC transporter Smart (SM00382): AAA ATPase superfamily ProSite (PS50101): ATP/GTP-binding site motif A (P-loop)%3B~Specificity unclear;gbkey=CDS;gene=livG2;product=ABC transporter ATP-binding protein;protein_id=CAL96349.1;transl_table=11
AM406670.1	EMBL	gene	4090204	4090938	.	+	.	ID=gene3794;Name=azo3734;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3734
AM406670.1	EMBL	CDS	4090204	4090938	.	+	0	ID=cds3730;Parent=gene3794;Dbxref=EnsemblGenomes-Gn:azo3734,EnsemblGenomes-Tr:CAL96350,GOA:A1KBZ4,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KBZ4,NCBI_GP:CAL96350.1;Name=CAL96350.1;Note=ATP-binding cassette (ABC) transporters are multidomain membrane proteins%2C responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains. Similar to trembl|Q7NXX0 (58%25) and to trembl|Q7VVD3 (59%25). Smart: AAA ATPases%3B~Specificity unclear;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=CAL96350.1;transl_table=11
AM406670.1	EMBL	gene	4090917	4092113	.	-	.	ID=gene3795;Name=bcr2;gbkey=Gene;gene=bcr2;gene_biotype=protein_coding;locus_tag=azo3735
AM406670.1	EMBL	CDS	4090917	4092113	.	-	0	ID=cds3731;Parent=gene3795;Dbxref=EnsemblGenomes-Gn:azo3735,EnsemblGenomes-Tr:CAL96351,GOA:A1KBZ5,InterPro:IPR004812,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:A1KBZ5,NCBI_GP:CAL96351.1;Name=CAL96351.1;Note=Bicyclomycin resistance protein homolog. Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance. Probable membrane translocase (By similarity). InterPro: General carbohydrate%2C amino acid %2C and divalent cation transport. Occurence of signal peptide and 12 transmembrane helices. Presence of DUF domains and Cation transport ATPase C-terminus domains. 35%25 identity and 47%25 similarity to bcr from X.axonopodis. Probably it is a copy of bcr1 in Azoarcus BH72 genome.%3B~Conserved hypothetical protein;gbkey=CDS;gene=bcr2;product=putative bicyclomycin resistance protein;protein_id=CAL96351.1;transl_table=11
AM406670.1	EMBL	gene	4092166	4093665	.	-	.	ID=gene3796;Name=azo3736;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3736
AM406670.1	EMBL	CDS	4092166	4093665	.	-	0	ID=cds3732;Parent=gene3796;Dbxref=EnsemblGenomes-Gn:azo3736,EnsemblGenomes-Tr:CAL96352,GOA:A1KBZ6,InterPro:IPR000523,InterPro:IPR001208,InterPro:IPR003593,InterPro:IPR004482,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR025158,InterPro:IPR027417,UniProtKB/TrEMBL:A1KBZ6,NCBI_GP:CAL96352.1;Name=CAL96352.1;Note=Conserved hypothetical protein. Homology to rsc0338 of R. solanacearum of 64%25 (trembl|Q8Y2J7). Probable Mg(2+) chelatase family protein. InterPro: Mg chelatase-related protein (IPR004482)%3B MCM family (IPR001208)%3B AAA ATPase superfamily (IPR003593)%3B Magnesium chalatase%2C chlI subunit (IPR000523)%3B TypeI antifreeze protein (IPR000104). no signal peptide. no TMHs. TIGR00368: Mg chelatase-related protein%3B~Family membership;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96352.1;transl_table=11
AM406670.1	EMBL	gene	4093748	4093999	.	-	.	ID=gene3797;Name=azo3737;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3737
AM406670.1	EMBL	CDS	4093748	4093999	.	-	0	ID=cds3733;Parent=gene3797;Dbxref=EnsemblGenomes-Gn:azo3737,EnsemblGenomes-Tr:CAL96353,InterPro:IPR007475,UniProtKB/TrEMBL:A1KBZ7,NCBI_GP:CAL96353.1;Name=CAL96353.1;Note=Conserved hypothetical protein. Homology to NE0192 of N.europaea of 52%25 (trembl:Q82XR2). Has PF04380%2C Protein of unknown function (DUF526)%3BIPR007475 %3BThis is a family of uncharacterised proteins. No signal peptide. No TMHs.;gbkey=CDS;product=putative secreted protein;protein_id=CAL96353.1;transl_table=11
AM406670.1	EMBL	gene	4094284	4095024	.	+	.	ID=gene3798;Name=azo3738;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3738
AM406670.1	EMBL	CDS	4094284	4095024	.	+	0	ID=cds3734;Parent=gene3798;Dbxref=EnsemblGenomes-Gn:azo3738,EnsemblGenomes-Tr:CAL96354,InterPro:IPR010239,UniProtKB/TrEMBL:A1KBZ8,NCBI_GP:CAL96354.1;Name=CAL96354.1;Note=Conserved hypothetical secreted protein. Homology to rsc0341 of R. solanacearum of 40%25 (trembl|Q8Y2J4(SRS)). no domains predicted. signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96354.1;transl_table=11
AM406670.1	EMBL	gene	4095083	4095421	.	+	.	ID=gene3799;Name=glnK;gbkey=Gene;gene=glnK;gene_biotype=protein_coding;locus_tag=azo3739
AM406670.1	EMBL	CDS	4095083	4095421	.	+	0	ID=cds3735;Parent=gene3799;Dbxref=EnsemblGenomes-Gn:azo3739,EnsemblGenomes-Tr:CAL96355,GOA:Q9EZQ3,InterPro:IPR002187,InterPro:IPR002332,InterPro:IPR011322,InterPro:IPR015867,InterPro:IPR017918,UniProtKB/TrEMBL:Q9EZQ3,NCBI_GP:CAL96355.1;Name=CAL96355.1;Note=PII-like signal transmitter proteins are involved in the regulation of ammonium assimilation and nitrogen fixation. The PII-like proteins differed from each other in details of N-sensing. They were covalently modified by uridylylation upon nitrogen limitation. Similar to trembl|Q9EZQ3 (100%25) and to trembl|Q7NQY3 (87%25). Pfam: Nitrogen regulatory protein P-II%3B~High confidence in function and specificity;gbkey=CDS;gene=glnK;product=PII-like signal transmitter protein GlnK;protein_id=CAL96355.1;transl_table=11
AM406670.1	EMBL	gene	4095436	4096842	.	+	.	ID=gene3800;Name=amtB;gbkey=Gene;gene=amtB;gene_biotype=protein_coding;locus_tag=azo3740
AM406670.1	EMBL	CDS	4095436	4096842	.	+	0	ID=cds3736;Parent=gene3800;Dbxref=EnsemblGenomes-Gn:azo3740,EnsemblGenomes-Tr:CAL96356,GOA:A1KC00,InterPro:IPR001905,InterPro:IPR002229,InterPro:IPR018047,InterPro:IPR024041,InterPro:IPR029020,UniProtKB/TrEMBL:A1KC00,NCBI_GP:CAL96356.1;Name=CAL96356.1;Note=Ammonium transporter 1 member 1 (AtAMT1%3B1). Involved in high affinity ammonium uptake. TREMBL:Q8RP89: 100%25 identity (published) InterPro:IPR001905%3B Ammonium_transpt. IPR002229%3B RhesusRHD. IPR010256%3B RH_like_transpt. Pfam: PF00909%3B Ammonium_transp PRINTS PR00342%3B RHESUSRHD. TIGRFAMs TIGR00836%3B amt%3B PROSITE: PS01219%3B AMMONIUM_TRANSP SignalP predicted signal peptide present (0.997 probability). TMHMM predicted 12 transmembrane helices%3B~High confidence in function and specificity;gbkey=CDS;gene=amtB;product=ammonium transporter;protein_id=CAL96356.1;transl_table=11
AM406670.1	EMBL	gene	4097017	4097757	.	+	.	ID=gene3801;Name=ompW;gbkey=Gene;gene=ompW;gene_biotype=protein_coding;locus_tag=azo3741
AM406670.1	EMBL	CDS	4097017	4097757	.	+	0	ID=cds3737;Parent=gene3801;Dbxref=EnsemblGenomes-Gn:azo3741,EnsemblGenomes-Tr:CAL96357,GOA:A1KC01,InterPro:IPR000758,InterPro:IPR005618,InterPro:IPR011250,InterPro:IPR017690,UniProtKB/TrEMBL:A1KC01,NCBI_GP:CAL96357.1;Name=CAL96357.1;Note=Outer membrane protein W precursor. Acts as a receptor for colicin S4.%3B~High confidence in function and specificity;gbkey=CDS;gene=ompW;product=outer membrane protein precursor;protein_id=CAL96357.1;transl_table=11
AM406670.1	EMBL	gene	4097840	4098715	.	-	.	ID=gene3802;Name=purU;gbkey=Gene;gene=purU;gene_biotype=protein_coding;locus_tag=azo3742
AM406670.1	EMBL	CDS	4097840	4098715	.	-	0	ID=cds3738;Parent=gene3802;Dbxref=EnsemblGenomes-Gn:azo3742,EnsemblGenomes-Tr:CAL96358,GOA:A1KC02,InterPro:IPR002376,InterPro:IPR002912,InterPro:IPR004810,UniProtKB/TrEMBL:A1KC02,NCBI_GP:CAL96358.1;Name=CAL96358.1;Note=Formyltetrahydrofolate deformylase (Formyltetrahydrofolate hydrolase) (Formyl-FH(4) hydrolase) InterPro: Formyltetrahydrofolate deformylase%3B~High confidence in function and specificity;gbkey=CDS;gene=purU;product=Official Name Formyltetrahydrofolate deformylase;protein_id=CAL96358.1;transl_table=11
AM406670.1	EMBL	gene	4098817	4099428	.	-	.	ID=gene3803;Name=thrH;gbkey=Gene;gene=thrH;gene_biotype=protein_coding;locus_tag=azo3743
AM406670.1	EMBL	CDS	4098817	4099428	.	-	0	ID=cds3739;Parent=gene3803;Dbxref=EnsemblGenomes-Gn:azo3743,EnsemblGenomes-Tr:CAL96359,GOA:A1KC03,InterPro:IPR011863,InterPro:IPR023214,UniProtKB/TrEMBL:A1KC03,NCBI_GP:CAL96359.1;Name=CAL96359.1;Note=ThrH encodes a protein with an in vivo homoserine-kinase-like activity in P. aeruginosa. Homoserine kinase%2Cthe product of the thrB gene%2C catalyzes an obligatory step of threonine biosynthesis. Similar trembl|Q9I2Y2 (62%25). Pfam (PF00702): haloacid dehalogenase-like hydrolase%3B~Function unclear;gbkey=CDS;gene=thrH;product=probable homoserine kinase;protein_id=CAL96359.1;transl_table=11
AM406670.1	EMBL	gene	4099596	4100801	.	+	.	ID=gene3804;Name=azo3744;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3744
AM406670.1	EMBL	CDS	4099596	4100801	.	+	0	ID=cds3740;Parent=gene3804;Dbxref=EnsemblGenomes-Gn:azo3744,EnsemblGenomes-Tr:CAL96360,InterPro:IPR003607,InterPro:IPR006674,InterPro:IPR006675,InterPro:IPR021812,UniProtKB/TrEMBL:A1KC04,NCBI_GP:CAL96360.1;Name=CAL96360.1;Note=HD-domain containing protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=HD-domain containing protein;protein_id=CAL96360.1;transl_table=11
AM406670.1	EMBL	gene	4100816	4102747	.	-	.	ID=gene3805;Name=yheS;gbkey=Gene;gene=yheS;gene_biotype=protein_coding;locus_tag=azo3745
AM406670.1	EMBL	CDS	4100816	4102747	.	-	0	ID=cds3741;Parent=gene3805;Dbxref=EnsemblGenomes-Gn:azo3745,EnsemblGenomes-Tr:CAL96361,GOA:A1KC05,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KC05,NCBI_GP:CAL96361.1;Name=CAL96361.1;Note=ABC transporter ATP-binding protein yheS. Nonsecretory protein with Signal peptide. Presence of oxidoreductase Molybdopterin binding domain%2C M-protein repeats%2C RecF protein domains%2C Cu amine oxidase N3 domain%2CK+ channels and iron-sulphur binding potentials.57%25 identity and 68%25 similarity to Dechloromonas ATPase component of ABC transporter ureG: urease accessory protein UreG%3B~Family membership;gbkey=CDS;gene=yheS;product=probable ABC transporter%2C ATP-binding protein;protein_id=CAL96361.1;transl_table=11
AM406670.1	EMBL	gene	4102815	4103438	.	+	.	ID=gene3806;Name=azo3746;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3746
AM406670.1	EMBL	CDS	4102815	4103438	.	+	0	ID=cds3742;Parent=gene3806;Dbxref=EnsemblGenomes-Gn:azo3746,EnsemblGenomes-Tr:CAL96362,UniProtKB/TrEMBL:A1KC06,NCBI_GP:CAL96362.1;Name=CAL96362.1;Note=Hypothetical secreted protein. No homology to the data bank. No domains predicted. signal peptide no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL96362.1;transl_table=11
AM406670.1	EMBL	gene	4103463	4104068	.	-	.	ID=gene3807;Name=azo3747;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3747
AM406670.1	EMBL	CDS	4103463	4104068	.	-	0	ID=cds3743;Parent=gene3807;Dbxref=EnsemblGenomes-Gn:azo3747,EnsemblGenomes-Tr:CAL96363,GOA:A1KC07,InterPro:IPR001853,InterPro:IPR012336,InterPro:IPR014440,UniProtKB/TrEMBL:A1KC07,NCBI_GP:CAL96363.1;Name=CAL96363.1;Note=Catalyzes the isomerization of 2-hydroxychromene-2-carboxylate (hcca) to trans-o-hydroxybenzylidenepyruvate (thbpa). Upper napthalene catabolic pathway which involves conversion of napthalene to salicylate. Similar to TREMBL:Q7WEK4 (57%25 identity)%3B TREMBL:Q9I714 (35%25 identity)%3B SWISSPROT:Q51948 (29%25 identity). InterPro: 2-hydroxychromene-2-carboxylate isomerase Pfam (HCCA_isomerase): 2-hydroxychromene-2-carboxylate isomerase.%3B~Specificity unclear;gbkey=CDS;product=2-hydroxychromene-2-carboxylate isomerase family protein;protein_id=CAL96363.1;transl_table=11
AM406670.1	EMBL	gene	4104098	4104472	.	-	.	ID=gene3808;Name=azo3748;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3748
AM406670.1	EMBL	CDS	4104098	4104472	.	-	0	ID=cds3744;Parent=gene3808;Dbxref=EnsemblGenomes-Gn:azo3748,EnsemblGenomes-Tr:CAL96364,InterPro:IPR021317,UniProtKB/TrEMBL:A1KC08,NCBI_GP:CAL96364.1;Name=CAL96364.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96364.1;transl_table=11
AM406670.1	EMBL	gene	4104611	4105519	.	+	.	ID=gene3809;Name=ampR;gbkey=Gene;gene=ampR;gene_biotype=protein_coding;locus_tag=azo3749
AM406670.1	EMBL	CDS	4104611	4105519	.	+	0	ID=cds3745;Parent=gene3809;Dbxref=EnsemblGenomes-Gn:azo3749,EnsemblGenomes-Tr:CAL96365,GOA:A1KC09,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1KC09,NCBI_GP:CAL96365.1;Name=CAL96365.1;Note=Probable HTH-type transcriptional activator ampR. Regulates the expression of the beta-lactamase gene. Represses cephalosporinase (ampC) in the presence of beta-lactams and induces it in the absence of them. Similar to SWISSPROT: sprot|AMPR_PSEAE (34%25 Pseudomonas aeruginosa%2CHTH-type transcriptional activator AmpR) Pfam: PF00126 Bacterial regulatory helix-turn-helix protein%2C lysR family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=ampR;product=probable transcriptional regulator%2C LysR family;protein_id=CAL96365.1;transl_table=11
AM406670.1	EMBL	gene	4105616	4106194	.	+	.	ID=gene3810;Name=azo3750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3750
AM406670.1	EMBL	CDS	4105616	4106194	.	+	0	ID=cds3746;Parent=gene3810;Dbxref=EnsemblGenomes-Gn:azo3750,EnsemblGenomes-Tr:CAL96366,GOA:A1KC10,InterPro:IPR000868,UniProtKB/TrEMBL:A1KC10,NCBI_GP:CAL96366.1;Name=CAL96366.1;Note=This is a family of hydrolase enzymes. Isochorismatase%2C also known as 2%2C3 dihydro-2%2C3 dihydroxybenzoatesynthase catalyses the conversion of isochorismate%2C in the presence of water%2C to 2%2C3-dihydroxybenzoate and pyruvate. Similar to TREMBL:Q7NWS7 (61%25 identity)%3B TREMBL:Q8UIM8 (57%25 identity)%3B TREMBL:Q89UX3 (33%25 identity). InterPro (IPR000868): Isochorismatase hydrolase. Pfam (PF00857): Isochorismatase family.%3B~Family membership;gbkey=CDS;product=isochorismatase family protein;protein_id=CAL96366.1;transl_table=11
AM406670.1	EMBL	gene	4106205	4107167	.	+	.	ID=gene3811;Name=darR;gbkey=Gene;gene=darR;gene_biotype=protein_coding;locus_tag=azo3751
AM406670.1	EMBL	CDS	4106205	4107167	.	+	0	ID=cds3747;Parent=gene3811;Dbxref=EnsemblGenomes-Gn:azo3751,EnsemblGenomes-Tr:CAL96367,GOA:A1KC11,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR025628,InterPro:IPR029062,UniProtKB/TrEMBL:A1KC11,NCBI_GP:CAL96367.1;Name=CAL96367.1;Note=Probable AraC family transcriptional regulator%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=darR;product=probable AraC family transcriptional regulator;protein_id=CAL96367.1;transl_table=11
AM406670.1	EMBL	gene	4107175	4108071	.	-	.	ID=gene3812;Name=azo3752;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3752
AM406670.1	EMBL	CDS	4107175	4108071	.	-	0	ID=cds3748;Parent=gene3812;Dbxref=EnsemblGenomes-Gn:azo3752,EnsemblGenomes-Tr:CAL96368,GOA:A1KC12,InterPro:IPR000620,UniProtKB/TrEMBL:A1KC12,NCBI_GP:CAL96368.1;Name=CAL96368.1;Note=Conserved hypothetical membrane protein. Homology to RSC0519 of R. solanacearum of 51%25. InterPro: Integral membrane protein DUF6. Tigrfam: 2A78: Carboxylate/Amino Acid/Amine Transporter. Pfam: Integral membrane protein DUF6. probable signal peptide. probable 9 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96368.1;transl_table=11
AM406670.1	EMBL	gene	4108137	4111802	.	-	.	ID=gene3813;Name=putA;gbkey=Gene;gene=putA;gene_biotype=protein_coding;locus_tag=azo3753
AM406670.1	EMBL	CDS	4108137	4111802	.	-	0	ID=cds3749;Parent=gene3813;Dbxref=EnsemblGenomes-Gn:azo3753,EnsemblGenomes-Tr:CAL96369,GOA:A1KC13,InterPro:IPR002872,InterPro:IPR005933,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR024082,InterPro:IPR024089,InterPro:IPR024090,InterPro:IPR025703,InterPro:IPR029041,UniProtKB/TrEMBL:A1KC13,NCBI_GP:CAL96369.1;Name=CAL96369.1;Note=Probable bifunctional PutA protein [Includes: Proline dehydrogenase (EC 1.5.99.8)%3B Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)]. Homology to putA of s. meliloti of 52%25 (sprot|PUTA_RHIME) OXIDIZES PROLINE TO GLUTAMATE FOR USE AS A CARBON AND NITROGEN SOURCE AND ALSO FUNCTION AS A TRANSCRIPTIONAL REPRESSOR OF THE PUT OPERON. InterPro: Aldehyde dehydrogenase family (IPR002086)%3B Proline dehydrogenase (IPR002872) Pfam: Proline dehydrogenase%3B Aldehyde dehydrogenase family no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=putA;product=probable bifunctional PutA protein;protein_id=CAL96369.1;transl_table=11
AM406670.1	EMBL	gene	4111993	4113042	.	-	.	ID=gene3814;Name=azo3754;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3754
AM406670.1	EMBL	CDS	4111993	4113042	.	-	0	ID=cds3750;Parent=gene3814;Dbxref=EnsemblGenomes-Gn:azo3754,EnsemblGenomes-Tr:CAL96370,GOA:A1KC14,InterPro:IPR003374,InterPro:IPR024932,UniProtKB/TrEMBL:A1KC14,NCBI_GP:CAL96370.1;Name=CAL96370.1;Note=Putative thiamine biosynthesis lipoprotein ApbE. Homology to apbE of Salmonella typhimurium of 27%25 (gi|5915687|sp|P41780|APBE_SALTY(NBCI ENTREZ)). Pfam: ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP). No TMHs. Signal peptide present.%3B~Family membership;gbkey=CDS;product=putative thiamine biosynthesis lipoprotein ApbE;protein_id=CAL96370.1;transl_table=11
AM406670.1	EMBL	gene	4113039	4113995	.	-	.	ID=gene3815;Name=gshB;gbkey=Gene;gene=gshB;gene_biotype=protein_coding;locus_tag=azo3755
AM406670.1	EMBL	CDS	4113039	4113995	.	-	0	ID=cds3751;Parent=gene3815;Dbxref=EnsemblGenomes-Gn:azo3755,EnsemblGenomes-Tr:CAL96371,GOA:A1KC15,InterPro:IPR004215,InterPro:IPR004218,InterPro:IPR006284,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,UniProtKB/TrEMBL:A1KC15,NCBI_GP:CAL96371.1;Name=CAL96371.1;Note=Glutathione synthetase (GSH synthetase) (GSH-S) (GSHase). InterPro: Prokaryotic glutathione synthetase ATP-binding domain%3B~High confidence in function and specificity;gbkey=CDS;gene=gshB;product=glutathione synthase;protein_id=CAL96371.1;transl_table=11
AM406670.1	EMBL	gene	4114008	4115303	.	-	.	ID=gene3816;Name=gshA;gbkey=Gene;gene=gshA;gene_biotype=protein_coding;locus_tag=azo3756
AM406670.1	EMBL	CDS	4114008	4115303	.	-	0	ID=cds3752;Parent=gene3816;Dbxref=EnsemblGenomes-Gn:azo3756,EnsemblGenomes-Tr:CAL96372,GOA:A1KC16,InterPro:IPR011718,UniProtKB/TrEMBL:A1KC16,NCBI_GP:CAL96372.1;Name=CAL96372.1;Note=glutamate--cysteine ligase. Glutathione metabolism.%3B~High confidence in function and specificity;gbkey=CDS;gene=gshA;product=GshA protein;protein_id=CAL96372.1;transl_table=11
AM406670.1	EMBL	gene	4115424	4116680	.	-	.	ID=gene3817;Name=azo3757;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3757
AM406670.1	EMBL	CDS	4115424	4116680	.	-	0	ID=cds3753;Parent=gene3817;Dbxref=EnsemblGenomes-Gn:azo3757,EnsemblGenomes-Tr:CAL96373,GOA:A1KC17,InterPro:IPR002052,InterPro:IPR002296,InterPro:IPR029063,UniProtKB/TrEMBL:A1KC17,NCBI_GP:CAL96373.1;Name=CAL96373.1;Note=Modification methylase TaqI (EC 2.1.1.72) (Adenine-specific methyltransferase TaqI) (M.TaqI). THIS METHYLASE RECOGNIZES THE DOUBLE-STRANDED SEQUENCE TCGA CAUSES SPECIFIC METHYLATION ON A-4 ON BOTH STRANDS AND PROTECTS THE DNA FROM CLEAVAGE BY THE TAQI ENDONUCLEASE. InterPro: N6 adenine-specific DNA methyltransferase N12 class%3B~Family membership;gbkey=CDS;product=modification methyltransferase;protein_id=CAL96373.1;transl_table=11
AM406670.1	EMBL	gene	4116808	4117332	.	+	.	ID=gene3818;Name=dcrH3;gbkey=Gene;gene=dcrH3;gene_biotype=protein_coding;locus_tag=azo3758
AM406670.1	EMBL	CDS	4116808	4117332	.	+	0	ID=cds3754;Parent=gene3818;Dbxref=EnsemblGenomes-Gn:azo3758,EnsemblGenomes-Tr:CAL96374,GOA:A1KC18,InterPro:IPR012312,InterPro:IPR012827,UniProtKB/TrEMBL:A1KC18,NCBI_GP:CAL96374.1;Name=CAL96374.1;Note=DcrH:hemerythrin protein%2C is transmembrane methyl-accepting protein probably involved in bacterial chemotaxis . 32%25 Hemerythrin. Pfam:PF01814%3B Hemerythrin%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=dcrH3;product=putative hemerythrin-like protein;protein_id=CAL96374.1;transl_table=11
AM406670.1	EMBL	gene	4117384	4117836	.	-	.	ID=gene3819;Name=azo3759;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3759
AM406670.1	EMBL	CDS	4117384	4117836	.	-	0	ID=cds3755;Parent=gene3819;Dbxref=EnsemblGenomes-Gn:azo3759,EnsemblGenomes-Tr:CAL96375,GOA:A1KC19,InterPro:IPR012312,InterPro:IPR012827,InterPro:IPR016131,UniProtKB/TrEMBL:A1KC19,NCBI_GP:CAL96375.1;Name=CAL96375.1;Note=Hemerythrin family protein%2C 38%25 Identity to TrEMBl:Q74G47%2C35%25 to TrEMBL%3B Q73NY7. Has PF01814%2CHemerythrin HHE cation binding domain%3B IPR002063 Hemerythrin%3B Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance%2C in Nereis diversicolor P80255 binds Cadmium so as to protect the organism from toxicity ([3]). However Hemerythrin is classically described as Oxygen-binding through two attached Fe2+ ions. And the bacterial Q7WX96 is a regulator of response to NO%2C which suggests yet another set-up for its metal ligands . In Staphylococcus aureus P72360 has been noted to be important when the organism switches to living in environments with low oxygen concentrations%3B perhaps this protein acts as an oxygen store or scavenger.;gbkey=CDS;product=hemerythrin family protein;protein_id=CAL96375.1;transl_table=11
AM406670.1	EMBL	gene	4118075	4119517	.	+	.	ID=gene3820;Name=azo3760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3760
AM406670.1	EMBL	CDS	4118075	4119517	.	+	0	ID=cds3756;Parent=gene3820;Dbxref=EnsemblGenomes-Gn:azo3760,EnsemblGenomes-Tr:CAL96376,InterPro:IPR010352,UniProtKB/TrEMBL:A1KC20,NCBI_GP:CAL96376.1;Name=CAL96376.1;Note=Hypothetical secreted protein. No good homology of the entire protein to the data bank. Has PF06097%2CBacterial protein of unknown function (DUF945)%3BIPR010352%3B This family consists of several hypothetical bacterial proteins of unknown function. No TMHs Siganl peptide present.;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL96376.1;transl_table=11
AM406670.1	EMBL	gene	4119639	4120235	.	+	.	ID=gene3821;Name=azo3761;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3761
AM406670.1	EMBL	CDS	4119639	4120235	.	+	0	ID=cds3757;Parent=gene3821;Dbxref=EnsemblGenomes-Gn:azo3761,EnsemblGenomes-Tr:CAL96377,UniProtKB/TrEMBL:A1KC21,NCBI_GP:CAL96377.1;Name=CAL96377.1;Note=Conserved hypothetical protein. Homology to ebD78 of Azoarcus sp. EbN1 of 40%25 (gnl|keqq|eba:ebD78(KEGG)). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96377.1;transl_table=11
AM406670.1	EMBL	gene	4120286	4121464	.	+	.	ID=gene3822;Name=azo3762;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3762
AM406670.1	EMBL	CDS	4120286	4121464	.	+	0	ID=cds3758;Parent=gene3822;Dbxref=EnsemblGenomes-Gn:azo3762,EnsemblGenomes-Tr:CAL96378,GOA:A1KC22,InterPro:IPR002641,InterPro:IPR016035,UniProtKB/TrEMBL:A1KC22,NCBI_GP:CAL96378.1;Name=CAL96378.1;Note=Hypothetical patatin-like protein. Homology to all2302 of Anabaena sp. of 20%25 (trembl|Q8YUN7). Pfam: Patatin. PATATIN MAY HAVE A DUAL ROLE AS A SOMATIC STORAGE PROTEIN AND AS AN ENZYME INVOLVED IN HOST RESISTANCE. THIS TUBER PROTEIN REPRESENTS APPROXIMATELY 40%25 OF THE TOTAL PROTEIN IN MATURE TUBERS. InterPro: Patatin (IPR002641). no signal peptide. no TMHs;gbkey=CDS;product=hypothetical patatin-like protein;protein_id=CAL96378.1;transl_table=11
AM406670.1	EMBL	gene	4121479	4122924	.	+	.	ID=gene3823;Name=azo3763;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3763
AM406670.1	EMBL	CDS	4121479	4122924	.	+	0	ID=cds3759;Parent=gene3823;Dbxref=EnsemblGenomes-Gn:azo3763,EnsemblGenomes-Tr:CAL96379,InterPro:IPR025136,UniProtKB/TrEMBL:A1KC23,NCBI_GP:CAL96379.1;Name=CAL96379.1;Note=Hypothetical protein. no homology to the data bank no domains no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96379.1;transl_table=11
AM406670.1	EMBL	gene	4122934	4123830	.	-	.	ID=gene3824;Name=azo3764;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3764
AM406670.1	EMBL	CDS	4122934	4123830	.	-	0	ID=cds3760;Parent=gene3824;Dbxref=EnsemblGenomes-Gn:azo3764,EnsemblGenomes-Tr:CAL96380,InterPro:IPR005269,UniProtKB/TrEMBL:A1KC24,NCBI_GP:CAL96380.1;Name=CAL96380.1;Note=Hypothetical 21.1 kDa protein in fasciation locus (ORF6). TREMBL:Q8FV26: 50%25 identity%2C 65%25 similarity InterPro:IPR005269%3B Cons_hypoth730. Pfam:PF03641%3B Lysine_decarbox L18_bact: ribosomal protein L18 Absence of signal peptide (Signal P predicted) Absence of transmembrane helices (TMHMM predicted)%3B~Specificity unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96380.1;transl_table=11
AM406670.1	EMBL	gene	4124278	4125519	.	+	.	ID=gene3825;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=azo3765
AM406670.1	EMBL	CDS	4124278	4125519	.	+	0	ID=cds3761;Parent=gene3825;Dbxref=EnsemblGenomes-Gn:azo3765,EnsemblGenomes-Tr:CAL96381,GOA:A1KC25,InterPro:IPR000926,InterPro:IPR022163,UniProtKB/TrEMBL:A1KC25,NCBI_GP:CAL96381.1;Name=CAL96381.1;Note=Probable GTP cyclohydrolase II. TIGRFAM: ribA: GTP cyclohydrolase II%3B~Function unclear;gbkey=CDS;gene=ribA;product=RibA protein;protein_id=CAL96381.1;transl_table=11
AM406670.1	EMBL	gene	4125568	4126857	.	+	.	ID=gene3826;Name=azo3766;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3766
AM406670.1	EMBL	CDS	4125568	4126857	.	+	0	ID=cds3762;Parent=gene3826;Dbxref=EnsemblGenomes-Gn:azo3766,EnsemblGenomes-Tr:CAL96382,InterPro:IPR012469,UniProtKB/TrEMBL:A1KC26,NCBI_GP:CAL96382.1;Name=CAL96382.1;Note=Conserved hypothetical protein. Homology to blr7238 of B.japonicum of 48%25 (trembl:Q89E49). No domains predicted. No TMHs. Signal peptide with a probability of 0.570.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96382.1;transl_table=11
AM406670.1	EMBL	gene	4126875	4127507	.	+	.	ID=gene3827;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=azo3767
AM406670.1	EMBL	CDS	4126875	4127507	.	+	0	ID=cds3763;Parent=gene3827;Dbxref=EnsemblGenomes-Gn:azo3767,EnsemblGenomes-Tr:CAL96383,GOA:A1KC27,InterPro:IPR005765,InterPro:IPR029057,UniProtKB/TrEMBL:A1KC27,NCBI_GP:CAL96383.1;Name=CAL96383.1;Note=Uracil phosphoribosyltransferase. (UMP pyrophosphorylase) (UMP diphosphorylase)%3B~High confidence in function and specificity;gbkey=CDS;gene=upp;product=uracil phosphoribosyltransferase.;protein_id=CAL96383.1;transl_table=11
AM406670.1	EMBL	gene	4127515	4129629	.	-	.	ID=gene3828;Name=azo3768;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3768
AM406670.1	EMBL	CDS	4127515	4129629	.	-	0	ID=cds3764;Parent=gene3828;Dbxref=EnsemblGenomes-Gn:azo3768,EnsemblGenomes-Tr:CAL96384,GOA:A1KC28,InterPro:IPR002226,InterPro:IPR010582,InterPro:IPR011614,InterPro:IPR018028,InterPro:IPR020835,InterPro:IPR024708,InterPro:IPR024712,InterPro:IPR029062,UniProtKB/TrEMBL:A1KC28,NCBI_GP:CAL96384.1;Name=CAL96384.1;Note=Region start changed from 4129741 to 4129603 (-138 bases);gbkey=CDS;product=putative catalase;protein_id=CAL96384.1;transl_table=11
AM406670.1	EMBL	gene	4129784	4131070	.	+	.	ID=gene3829;Name=codA;gbkey=Gene;gene=codA;gene_biotype=protein_coding;locus_tag=azo3769
AM406670.1	EMBL	CDS	4129784	4131070	.	+	0	ID=cds3765;Parent=gene3829;Dbxref=EnsemblGenomes-Gn:azo3769,EnsemblGenomes-Tr:CAL96385,GOA:A1KC29,InterPro:IPR011059,InterPro:IPR013108,UniProtKB/TrEMBL:A1KC29,NCBI_GP:CAL96385.1;Name=CAL96385.1;Note=Cytosine deaminase (Cytosine aminohydrolase).%3B~High confidence in function and specificity;gbkey=CDS;gene=codA;product=cytosine deaminase;protein_id=CAL96385.1;transl_table=11
AM406670.1	EMBL	gene	4131244	4131738	.	+	.	ID=gene3830;Name=azo3770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3770
AM406670.1	EMBL	CDS	4131244	4131738	.	+	0	ID=cds3766;Parent=gene3830;Dbxref=EnsemblGenomes-Gn:azo3770,EnsemblGenomes-Tr:CAL96386,InterPro:IPR007055,InterPro:IPR018392,UniProtKB/TrEMBL:A1KC30,NCBI_GP:CAL96386.1;Name=CAL96386.1;Note=conserved hypothetical protein%2C 43%25 identity (60%25 similarity) to TrEMBL%3B Q8ZML9. TrEMBL%3BQ8X937(44%25 identity to Escherichia coli) Has PF04972%2C Putative phospholipid-binding domain%3BIPR007055%2C TAD%3B This domain is found in a family of osmotic shock protection proteins (e.g. P27291). It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. Has SMART%3BSM00257%2CLysM%2C Lysin motif:IPR002482%3B This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96386.1;transl_table=11
AM406670.1	EMBL	gene	4131848	4132270	.	+	.	ID=gene3831;Name=fcbC2;gbkey=Gene;gene=fcbC2;gene_biotype=protein_coding;locus_tag=azo3771
AM406670.1	EMBL	CDS	4131848	4132270	.	+	0	ID=cds3767;Parent=gene3831;Dbxref=EnsemblGenomes-Gn:azo3771,EnsemblGenomes-Tr:CAL96387,GOA:A1KC31,InterPro:IPR029069,UniProtKB/TrEMBL:A1KC31,NCBI_GP:CAL96387.1;Name=CAL96387.1;Note=Probable Hypothetical protein AQ_1494. TREMBL:Q7NVG8: 46%25 identity%2C 64%25 similarity. InterPro:IPR006684%3B 4HBcoA_thiostrse. IPR006683%3B Thioestr_supf. Pfam PF03061%3B 4HBT TIGRFAMs%3B TIGR00051%3B 4HBcoA_thiostrse TIGR00051: conserved hypothetical protein No signal peptide. No transmembrane helices.%3B~Function unclear;gbkey=CDS;gene=fcbC2;product=probable thioesterase;protein_id=CAL96387.1;transl_table=11
AM406670.1	EMBL	gene	4132342	4133625	.	+	.	ID=gene3832;Name=azo3772;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3772
AM406670.1	EMBL	CDS	4132342	4133625	.	+	0	ID=cds3768;Parent=gene3832;Dbxref=EnsemblGenomes-Gn:azo3772,EnsemblGenomes-Tr:CAL96388,InterPro:IPR004792,InterPro:IPR022460,UniProtKB/TrEMBL:A1KC32,NCBI_GP:CAL96388.1;Name=CAL96388.1;Note=Hypothetical protein yhiN. TREMBL:Q7NU52: 55%25 identity%2C 66%25 similarity InterPro%3B IPR001327%3B FAD_pyr_redox. InterPro%3B IPR004792%3B HI0933_like. InterPro%3B IPR000719%3B Prot_kinase. InterPro%3B IPR001100%3B Pyr_redox InterPro: HI0933-like protein TIGR00275: conserved hypothetical pro Pfam PF03486%3B HI0933_like Non-secretory protein with no signal peptide (SignalP predicted) No transmembrane helices (TMHMM predicted)%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96388.1;transl_table=11
AM406670.1	EMBL	gene	4133633	4134811	.	-	.	ID=gene3833;Name=azo3773;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3773
AM406670.1	EMBL	CDS	4133633	4134811	.	-	0	ID=cds3769;Parent=gene3833;Dbxref=EnsemblGenomes-Gn:azo3773,EnsemblGenomes-Tr:CAL96389,InterPro:IPR006665,InterPro:IPR011990,UniProtKB/TrEMBL:A1KC33,NCBI_GP:CAL96389.1;Name=CAL96389.1;Note=Conserved hypothetical secreted protein. Homology to Daro03002424 of Dechloromonas aromatica of 32%25 (gi|41723837|ref|ZP_00150727.1|(NBCI ENTREZ)). Pfam: OmpA family. singal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96389.1;transl_table=11
AM406670.1	EMBL	gene	4134801	4136297	.	-	.	ID=gene3834;Name=azo3774;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3774
AM406670.1	EMBL	CDS	4134801	4136297	.	-	0	ID=cds3770;Parent=gene3834;Dbxref=EnsemblGenomes-Gn:azo3774,EnsemblGenomes-Tr:CAL96390,GOA:A1KC34,InterPro:IPR000719,InterPro:IPR008271,InterPro:IPR011009,InterPro:IPR017441,UniProtKB/TrEMBL:A1KC34,NCBI_GP:CAL96390.1;Name=CAL96390.1;Note=Putative serine/threonine-protein kinase (EC 2.7.11.1). Pfam: Protein kinase domain%3B~Family membership;gbkey=CDS;product=putative serine/threonine protein kinase;protein_id=CAL96390.1;transl_table=11
AM406670.1	EMBL	gene	4136601	4137917	.	+	.	ID=gene3835;Name=azo3775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3775
AM406670.1	EMBL	CDS	4136601	4137917	.	+	0	ID=cds3771;Parent=gene3835;Dbxref=EnsemblGenomes-Gn:azo3775,EnsemblGenomes-Tr:CAL96391,GOA:A1KC35,InterPro:IPR001539,UniProtKB/TrEMBL:A1KC35,NCBI_GP:CAL96391.1;Name=CAL96391.1;Note=Collagenase and related proteases. Homology to ne1979 of N. europaea of 63%25 (trembl|Q82TC1). InterPro: Peptidase family U32 (IPR001539). Pfam: Peptidase family U32 no signal peptide no TMHs%3B~Family membership%3B~ORF9;gbkey=CDS;product=hypothetical protein;protein_id=CAL96391.1;transl_table=11
AM406670.1	EMBL	gene	4137914	4138504	.	-	.	ID=gene3836;Name=azo3776;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3776
AM406670.1	EMBL	CDS	4137914	4138504	.	-	0	ID=cds3772;Parent=gene3836;Dbxref=EnsemblGenomes-Gn:azo3776,EnsemblGenomes-Tr:CAL96392,InterPro:IPR021994,UniProtKB/TrEMBL:A1KC36,NCBI_GP:CAL96392.1;Name=CAL96392.1;Note=Conserved hypothetical membrane protein. Homology to ebA2790 of Azoarcus sp. EbN1 of 31%25 (gnl|keqq|eba:ebA2790(KEGG)). No domains predicted. no signal peptide. 2 TMHS%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96392.1;transl_table=11
AM406670.1	EMBL	gene	4138598	4140025	.	+	.	ID=gene3837;Name=azo3777;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3777
AM406670.1	EMBL	CDS	4138598	4140025	.	+	0	ID=cds3773;Parent=gene3837;Dbxref=EnsemblGenomes-Gn:azo3777,EnsemblGenomes-Tr:CAL96393,GOA:A1KC37,InterPro:IPR000160,InterPro:IPR009050,InterPro:IPR012292,InterPro:IPR029787,UniProtKB/TrEMBL:A1KC37,NCBI_GP:CAL96393.1;Name=CAL96393.1;Note=GGDEF family protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=GGDEF family protein;protein_id=CAL96393.1;transl_table=11
AM406670.1	EMBL	gene	4140029	4140520	.	+	.	ID=gene3838;Name=staT;gbkey=Gene;gene=staT;gene_biotype=protein_coding;locus_tag=azo3778
AM406670.1	EMBL	CDS	4140029	4140520	.	+	0	ID=cds3774;Parent=gene3838;Dbxref=EnsemblGenomes-Gn:azo3778,EnsemblGenomes-Tr:CAL96394,GOA:A1KC38,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:A1KC38,NCBI_GP:CAL96394.1;Name=CAL96394.1;Note=Putative streptothricin acetyltransferase. Homology to staT of S. lavenduale (sprot|STA_STRLA). Pfam: Acetyltransferase (GNAT) family. no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=staT;product=putative streptothricin acetyltransferase;protein_id=CAL96394.1;transl_table=11
AM406670.1	EMBL	gene	4140608	4142233	.	+	.	ID=gene3839;Name=ybiT;gbkey=Gene;gene=ybiT;gene_biotype=protein_coding;locus_tag=azo3779
AM406670.1	EMBL	CDS	4140608	4142233	.	+	0	ID=cds3775;Parent=gene3839;Dbxref=EnsemblGenomes-Gn:azo3779,EnsemblGenomes-Tr:CAL96395,GOA:A1KC39,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:A1KC39,NCBI_GP:CAL96395.1;Name=CAL96395.1;Note=Hypothetical ABC transporter ATP-binding protein ybiT. Probably involved in the transport of Cobalt%2Cbranched chain amino acids %2C or multi drug resistance. Occurence of tub domains%2C uridine kinase domain%2C DUF and RecF protein like domains. Signal P present. Central region%3B~Family membership;gbkey=CDS;gene=ybiT;product=probable ATP-binding ABC transporter protein;protein_id=CAL96395.1;transl_table=11
AM406670.1	EMBL	gene	4142403	4142786	.	+	.	ID=gene3840;Name=ptsL;gbkey=Gene;gene=ptsL;gene_biotype=protein_coding;locus_tag=azo3780
AM406670.1	EMBL	CDS	4142403	4142786	.	+	0	ID=cds3776;Parent=gene3840;Dbxref=EnsemblGenomes-Gn:azo3780,EnsemblGenomes-Tr:CAL96396,GOA:A1KC40,InterPro:IPR004701,UniProtKB/TrEMBL:A1KC40,NCBI_GP:CAL96396.1;Name=CAL96396.1;Note=This is a component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active -transport system. The IICD domains contain the sugar binding site and the transmembrane channel%3B the IIA domain contains the primary phosphorylation site (the donor is phospho-HPr)%3B IIA transfers its phosphoryl group to the IIB domain which finally transfers it to the sugar. 32%25 EIIA-man.IPR004720%3B PTSIIB_sorb. Pfam:PF03610%3B EIIA-man%3B 1.PF03830%3B PTSIIB_sorb%3B 1.%3B~Specificity unclear;gbkey=CDS;gene=ptsL;product=putative IIa component of sugar transport PTS system;protein_id=CAL96396.1;transl_table=11
AM406670.1	EMBL	gene	4142798	4143067	.	+	.	ID=gene3841;Name=ptsH;gbkey=Gene;gene=ptsH;gene_biotype=protein_coding;locus_tag=azo3781
AM406670.1	EMBL	CDS	4142798	4143067	.	+	0	ID=cds3777;Parent=gene3841;Dbxref=EnsemblGenomes-Gn:azo3781,EnsemblGenomes-Tr:CAL96397,GOA:A1KC41,InterPro:IPR000032,InterPro:IPR001020,InterPro:IPR002114,UniProtKB/TrEMBL:A1KC41,NCBI_GP:CAL96397.1;Name=CAL96397.1;Note=Phosphocarrier protein HPr (Histidine-containing protein) (Protein H). This is a component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active -transport system. The phosphoryl group from phosphoenolpyruvate (PEP) is transferred to the phosphoryl carrier protein HPr by enzyme I. Phospho-HPr then transfers it to the permease (enzymes II/III). HPr is common to all PTS (By similarity). 64%25 HPr_HisP_S.IPR000032%3B HPr_protein.IPR002114%3B HPr_SerP_S. IPR005698%3B PTS_HPr. Pfam:PF00381%3B PTS-HPr%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=ptsH;product=putative phosphocarrier protein HPr;protein_id=CAL96397.1;transl_table=11
AM406670.1	EMBL	gene	4143071	4144801	.	+	.	ID=gene3842;Name=ptsI;gbkey=Gene;gene=ptsI;gene_biotype=protein_coding;locus_tag=azo3782
AM406670.1	EMBL	CDS	4143071	4144801	.	+	0	ID=cds3778;Parent=gene3842;Dbxref=EnsemblGenomes-Gn:azo3782,EnsemblGenomes-Tr:CAL96398,GOA:A1KC42,InterPro:IPR000121,InterPro:IPR006318,InterPro:IPR008279,InterPro:IPR008731,InterPro:IPR015813,InterPro:IPR018274,InterPro:IPR023151,InterPro:IPR024692,UniProtKB/TrEMBL:A1KC42,NCBI_GP:CAL96398.1;Name=CAL96398.1;Note=Phosphoenolpyruvate-protein phosphotransferase(Phosphotransferase system enzyme I)(Protein I).This is a component of the phosphoenolpyruvate dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active -transport system. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr). Enzyme I is common to all PTS. 54%25 PEP-utilisers_N.IPR008279%3B PEP_mobile.IPR006318%3B PEP_P_trans.IPR000121%3B PEP_utilizers. Pfam:PF05524%3B PEP-utilisers_N%3B 1.PF00391%3B PEP-utilizers%3B 1.PF02896%3B PEP-utilizers_C%3B 1. TIGRFAMs:TIGR01417%3B PTS_I_fam%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=ptsI;product=putative Phosphoenolpyruvate-protein phosphotransferase;protein_id=CAL96398.1;transl_table=11
AM406670.1	EMBL	gene	4144876	4144950	.	+	.	ID=gene3843;Name=tRNA-Gly;gbkey=Gene;gene=tRNA-Gly;gene_biotype=tRNA;locus_tag=azo_tRNA_0056
AM406670.1	EMBL	tRNA	4144876	4144950	.	+	.	ID=rna64;Parent=gene3843;anticodon=(pos:4144909..4144911);gbkey=tRNA;gene=tRNA-Gly;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Gly
AM406670.1	EMBL	exon	4144876	4144950	.	+	.	ID=id65;Parent=rna64;anticodon=(pos:4144909..4144911);gbkey=tRNA;gene=tRNA-Gly;inference=nucleotide motif:Simple tRNAscan Autoannotator;product=tRNA-Gly
AM406670.1	EMBL	gene	4145096	4146052	.	+	.	ID=gene3844;Name=azo3783;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3783
AM406670.1	EMBL	CDS	4145096	4146052	.	+	0	ID=cds3779;Parent=gene3844;Dbxref=EnsemblGenomes-Gn:azo3783,EnsemblGenomes-Tr:CAL96399,UniProtKB/TrEMBL:A1KC43,NCBI_GP:CAL96399.1;Name=CAL96399.1;Note=Conserved hypothetical secreted protein. Homology to Daro03001609 of Dechloromonas aromatica of 35%25 (gi|53730883|ref|ZP_00151781.2|(NBCI ENTREZ)). No domains predicted. Signal peptide present. No TMH reported Present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96399.1;transl_table=11
AM406670.1	EMBL	gene	4146076	4146408	.	-	.	ID=gene3845;Name=azo3784;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3784
AM406670.1	EMBL	CDS	4146076	4146408	.	-	0	ID=cds3780;Parent=gene3845;Dbxref=EnsemblGenomes-Gn:azo3784,EnsemblGenomes-Tr:CAL96400,UniProtKB/TrEMBL:A1KC44,NCBI_GP:CAL96400.1;Name=CAL96400.1;Note=Hypothetical secreted protein. no homology of the entire protein to the data bank. no domains predicted. signal peptide. TMH in signal peptide;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL96400.1;transl_table=11
AM406670.1	EMBL	gene	4146462	4146809	.	-	.	ID=gene3846;Name=azo3785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3785
AM406670.1	EMBL	CDS	4146462	4146809	.	-	0	ID=cds3781;Parent=gene3846;Dbxref=EnsemblGenomes-Gn:azo3785,EnsemblGenomes-Tr:CAL96401,UniProtKB/TrEMBL:A1KC45,NCBI_GP:CAL96401.1;Name=CAL96401.1;gbkey=CDS;inference=nucleotide motif:Gismo;product=hypothetical protein;protein_id=CAL96401.1;transl_table=11
AM406670.1	EMBL	gene	4146921	4148009	.	+	.	ID=gene3847;Name=hupS;gbkey=Gene;gene=hupS;gene_biotype=protein_coding;locus_tag=azo3786
AM406670.1	EMBL	CDS	4146921	4148009	.	+	0	ID=cds3782;Parent=gene3847;Dbxref=EnsemblGenomes-Gn:azo3786,EnsemblGenomes-Tr:CAL96402,GOA:A1KC46,InterPro:IPR001821,InterPro:IPR006137,InterPro:IPR006311,InterPro:IPR019546,InterPro:IPR027394,UniProtKB/TrEMBL:A1KC46,NCBI_GP:CAL96402.1;Name=CAL96402.1;Note=Ferredoxin hydrogenase%2C small subunit. Homology to hoxK of A. eutrophus of 83%25 (sprot:MBHS_ALCEU). This enzyme recycles the H(2) produced by nitrogenase to increase the production of ATP and to protect nitrogenase against inhibition or damage by O(2) under carbon- or phosphate-limited conditions. Tigrfam: hydA: hydrogenase (NiFe) small subunit Pfam: NADH ubiquinone oxidoreductase 20kD signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hupS;product=ferredoxin hydrogenase%2C small chain;protein_id=CAL96402.1;transl_table=11
AM406670.1	EMBL	gene	4148006	4149802	.	+	.	ID=gene3848;Name=hupL;gbkey=Gene;gene=hupL;gene_biotype=protein_coding;locus_tag=azo3787
AM406670.1	EMBL	CDS	4148006	4149802	.	+	0	ID=cds3783;Parent=gene3848;Dbxref=EnsemblGenomes-Gn:azo3787,EnsemblGenomes-Tr:CAL96403,GOA:A1KC47,InterPro:IPR001501,InterPro:IPR018194,InterPro:IPR029014,UniProtKB/TrEMBL:A1KC47,NCBI_GP:CAL96403.1;Name=CAL96403.1;Note=Probable ferredoxin hydrogenase%2C large subunit. Homology to hoxG of A. eutrophus of 68%25 (>sprot|MBHL_ALCEU). This enzyme recycles the H(2) produced by nitrogenase to increase the production of ATP and to protect nitrogenase against inhibition or damage by O(2) under carbon- or phosphate-limited conditions. Pfam: Nickel dpendent hydrogenase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hupL;product=probable ferredoxin hydrogenase%2C large chain;protein_id=CAL96403.1;transl_table=11
AM406670.1	EMBL	gene	4149947	4150654	.	+	.	ID=gene3849;Name=hupC;gbkey=Gene;gene=hupC;gene_biotype=protein_coding;locus_tag=azo3788
AM406670.1	EMBL	CDS	4149947	4150654	.	+	0	ID=cds3784;Parent=gene3849;Dbxref=EnsemblGenomes-Gn:azo3788,EnsemblGenomes-Tr:CAL96404,GOA:A1KC48,InterPro:IPR000516,InterPro:IPR016174,UniProtKB/TrEMBL:A1KC48,NCBI_GP:CAL96404.1;Name=CAL96404.1;Note=Probable Ni/Fe-hydrogenase%2C B-type cytochrome subunit. Homology to hupZ of A. chroococcum of 65%25 (sprot|CYBH_AZOCH) Probable b-type cytochrome. InterPro: Nickel-dependent hydrogenase b-type cytochrome subunit (IPR000516) Pfam: Nickel-dependent hydrogenase b-type cytrochrome subunit no signal peptide 4 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hupC;product=probable Ni/Fe-hydrogenase%2C B-type cytochrome subunit;protein_id=CAL96404.1;transl_table=11
AM406670.1	EMBL	gene	4150663	4151007	.	+	.	ID=gene3850;Name=azo3789;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3789
AM406670.1	EMBL	CDS	4150663	4151007	.	+	0	ID=cds3785;Parent=gene3850;Dbxref=EnsemblGenomes-Gn:azo3789,EnsemblGenomes-Tr:CAL96405,GOA:A1KC49,InterPro:IPR001387,InterPro:IPR010982,InterPro:IPR013430,UniProtKB/TrEMBL:A1KC49,NCBI_GP:CAL96405.1;Name=CAL96405.1;Note=Conserved hypothetical protein. Homology to ne1110 of N. europaea of 35%25 (trembl|Q82VH8). InterPro: Helix-turn-helix motif (IPR0001387). Pfam: Helix-turn-helix. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96405.1;transl_table=11
AM406670.1	EMBL	gene	4151089	4151679	.	+	.	ID=gene3851;Name=azo3790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3790
AM406670.1	EMBL	CDS	4151089	4151679	.	+	0	ID=cds3786;Parent=gene3851;Dbxref=EnsemblGenomes-Gn:azo3790,EnsemblGenomes-Tr:CAL96406,GOA:A1KC50,InterPro:IPR000889,InterPro:IPR012336,InterPro:IPR029759,UniProtKB/TrEMBL:A1KC50,NCBI_GP:CAL96406.1;Name=CAL96406.1;Note=Conserved hypothetical glutathione peroxidase. Homology to gpwA of P. wisconsinensis of 52%25 (SWISSPROT:GPWA_PSEWI). Glutathione peroxidase (GSHPx)%2C an enzyme whose principal function is to protect against damage from endogenously-formed hydroxyperoxides%2Ccatalyses the reduction of hydroxyperoxides by glutathione. InterPro: Glutathione peroxidase (IPR000889)%2CType I antifreeze protein (IPR000104). Pfam: Glutathione peroxidase. signal peptide. no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical glutathione peroxidase;protein_id=CAL96406.1;transl_table=11
AM406670.1	EMBL	gene	4151699	4153393	.	-	.	ID=gene3852;Name=azo3791;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3791
AM406670.1	EMBL	CDS	4151699	4153393	.	-	0	ID=cds3787;Parent=gene3852;Dbxref=EnsemblGenomes-Gn:azo3791,EnsemblGenomes-Tr:CAL96407,GOA:A1KC51,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR027417,UniProtKB/TrEMBL:A1KC51,NCBI_GP:CAL96407.1;Name=CAL96407.1;Note=Conserved hypothetical ATPase. Homology to MCA0262 of Methylococcus capsulatus of 68%25 (gi|53756248|gb|AAU90539.1|(NBCI ENTREZ)). InterPro: AAA-protein (ATPases associated with various cellular activities) (IPR003959)%3BAAA ATPase superfamily (IPR003593) Pfam: ATPase family associated with various cellular activities (domaine from 365 aa to 540 aa) no signal peptide. no TMHs.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical ATPase;protein_id=CAL96407.1;transl_table=11
AM406670.1	EMBL	gene	4153728	4154408	.	+	.	ID=gene3853;Name=hupD;gbkey=Gene;gene=hupD;gene_biotype=protein_coding;locus_tag=azo3792
AM406670.1	EMBL	CDS	4153728	4154408	.	+	0	ID=cds3788;Parent=gene3853;Dbxref=EnsemblGenomes-Gn:azo3792,EnsemblGenomes-Tr:CAL96408,GOA:A1KC52,InterPro:IPR000671,InterPro:IPR004419,InterPro:IPR023430,UniProtKB/TrEMBL:A1KC52,NCBI_GP:CAL96408.1;Name=CAL96408.1;Note=Hydrogenase expression/formation protein hupD%2C 54%25 identity%2C(63%25 simialrity) to SwissProt:Q03004. Aliases: hoxM(SwissProt:P40591)%2C hyaD(E.coli). Has PF01750:Hydrogenase maturation protease%3BThe family consists of hydrogenase maturation proteases. In E. coli HypI the hydrogenase maturation protease is involved in processing of HypE the large subunit of hydrogenases 3%2C by cleavage of its C-terminal. IPR000671:Peptidase_M52%3B TIGR00072%3B hydrog_prot%3B Signal P reporting SIgnal peptide Present. No TMH present.%3B~High confidence in function and specificity;gbkey=CDS;gene=hupD;product=hydrogenase expression/formation protein hupD;protein_id=CAL96408.1;transl_table=11
AM406670.1	EMBL	gene	4154410	4154721	.	+	.	ID=gene3854;Name=hupF;gbkey=Gene;gene=hupF;gene_biotype=protein_coding;locus_tag=azo3793
AM406670.1	EMBL	CDS	4154410	4154721	.	+	0	ID=cds3789;Parent=gene3854;Dbxref=EnsemblGenomes-Gn:azo3793,EnsemblGenomes-Tr:CAL96409,InterPro:IPR001109,InterPro:IPR019812,UniProtKB/TrEMBL:A1KC53,NCBI_GP:CAL96409.1;Name=CAL96409.1;Note=Putative Hydrogenase expression/formation protein hupF%2C43%25 similarity to TrEMBL%3B Q6PTB2. No Signal Peptide or TMH reported present. Has PF01455:HupF/HypC family(IPR001109)%3BThe large subunit of [NiFe]-hydrogenase%2Cas well as other nickel metalloenzymes%2C is synthesized as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HUPF/HYPC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process . They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation.%3B~High confidence in function and specificity;gbkey=CDS;gene=hupF;product=putative Hydrogenase expression/formation protein hupF;protein_id=CAL96409.1;transl_table=11
AM406670.1	EMBL	gene	4154718	4155176	.	+	.	ID=gene3855;Name=hupG;gbkey=Gene;gene=hupG;gene_biotype=protein_coding;locus_tag=azo3794
AM406670.1	EMBL	CDS	4154718	4155176	.	+	0	ID=cds3790;Parent=gene3855;Dbxref=EnsemblGenomes-Gn:azo3794,EnsemblGenomes-Tr:CAL96410,InterPro:IPR010893,InterPro:IPR012336,UniProtKB/TrEMBL:A1KC54,NCBI_GP:CAL96410.1;Name=CAL96410.1;Note=Hydrogenase-1 operon protein HyaE%2C 50%25 similarity to TrEMBL%3BQ8XGC7%2C 46%25 similarity to SwissProt%3BP19931. Alias: hupG Has PF07449:Hydrogenase-1 expression protein HyaE(IPR010893)%3BThis family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the E. coli protein HyaE%2C and the homologous proteins HoxO of R. eutropha and HupG of R. leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity%2C suggesting that it has a critical role in hydrogenase assembly. No signal peptide or TMH reported present.%3B~High confidence in function and specificity;gbkey=CDS;gene=hupG;product=Hydrogenase-1 operon protein hyaE;protein_id=CAL96410.1;transl_table=11
AM406670.1	EMBL	gene	4155192	4156064	.	+	.	ID=gene3856;Name=hupH;gbkey=Gene;gene=hupH;gene_biotype=protein_coding;locus_tag=azo3795
AM406670.1	EMBL	CDS	4155192	4156064	.	+	0	ID=cds3791;Parent=gene3856;Dbxref=EnsemblGenomes-Gn:azo3795,EnsemblGenomes-Tr:CAL96411,InterPro:IPR006894,UniProtKB/TrEMBL:A1KC55,NCBI_GP:CAL96411.1;Name=CAL96411.1;Note=Hydrogenase expression/formation protein hupH%2C 58%25 similarity to SwissProt:Q03007. TrEMBL%3BQ6PTB0%2CTrEMBL%3BP95499%2C SwissProt%3BP19932. Has PF04809(IPR006894):HupH hydrogenase expression protein%2C C-terminal conserved region%3BThis family represents a C-terminal conserved region found in these bacterial proteins necessary for hydrogenase synthesis. Their precise function is unknown. No Signal peptide or TMH reported Present.%3B~High confidence in function and specificity;gbkey=CDS;gene=hupH;product=hydrogenase-1 operon protein hupH;protein_id=CAL96411.1;transl_table=11
AM406670.1	EMBL	gene	4156109	4156321	.	+	.	ID=gene3857;Name=hupI;gbkey=Gene;gene=hupI;gene_biotype=protein_coding;locus_tag=azo3796
AM406670.1	EMBL	CDS	4156109	4156321	.	+	0	ID=cds3792;Parent=gene3857;Dbxref=EnsemblGenomes-Gn:azo3796,EnsemblGenomes-Tr:CAL96412,GOA:A1KC56,InterPro:IPR004039,InterPro:IPR024934,InterPro:IPR024935,UniProtKB/TrEMBL:A1KC56,NCBI_GP:CAL96412.1;Name=CAL96412.1;Note=Probable rubredoxin protein%2C 61%25 Identity to SProt%3BP30778%2C P31912. Has PF00301%2C Rubredoxin%3BRubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer%2Csometimes replacing ferredoxin as an electron carrier. No signal peptide. No TMHs.%3B~High confidence in function and specificity;gbkey=CDS;gene=hupI;product=probable rubredoxin protein.;protein_id=CAL96412.1;transl_table=11
AM406670.1	EMBL	gene	4156321	4156887	.	+	.	ID=gene3858;Name=hupJ;gbkey=Gene;gene=hupJ;gene_biotype=protein_coding;locus_tag=azo3797
AM406670.1	EMBL	CDS	4156321	4156887	.	+	0	ID=cds3793;Parent=gene3858;Dbxref=EnsemblGenomes-Gn:azo3797,EnsemblGenomes-Tr:CAL96413,InterPro:IPR023994,UniProtKB/TrEMBL:A1KC57,NCBI_GP:CAL96413.1;Name=CAL96413.1;Note=Probable Hydrogenase expression/formation protein hupJ%2C 52%25 similarity to SwissProtP28152. Alias:hybE No Signal Peptide or TMH reported present. thiM: hydroxyethylthiazole kinase;gbkey=CDS;gene=hupJ;product=probable Hydrogenase expression/formation protein;protein_id=CAL96413.1;transl_table=11
AM406670.1	EMBL	gene	4156888	4157994	.	+	.	ID=gene3859;Name=hupK;gbkey=Gene;gene=hupK;gene_biotype=protein_coding;locus_tag=azo3798
AM406670.1	EMBL	CDS	4156888	4157994	.	+	0	ID=cds3794;Parent=gene3859;Dbxref=EnsemblGenomes-Gn:azo3798,EnsemblGenomes-Tr:CAL96414,InterPro:IPR029014,UniProtKB/TrEMBL:A1KC58,NCBI_GP:CAL96414.1;Name=CAL96414.1;Note=Putative hydrogenase expression/formation protein HupK. Homology to hupK of R. leguminosarum of 33%25 (gi|48731|emb|CAA37158.1|(NCBI ENTREZ). No domains predicted. No signal peptide or TMH present.%2C %2C%3B~Family membership;gbkey=CDS;gene=hupK;product=putative hydrogenase expression/formation protein HupK;protein_id=CAL96414.1;transl_table=11
AM406670.1	EMBL	gene	4157987	4158331	.	+	.	ID=gene3860;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=azo3799
AM406670.1	EMBL	CDS	4157987	4158331	.	+	0	ID=cds3795;Parent=gene3860;Dbxref=EnsemblGenomes-Gn:azo3799,EnsemblGenomes-Tr:CAL96415,GOA:A1KC59,InterPro:IPR000688,InterPro:IPR020538,NCBI_GP:CAL96415.1;Name=CAL96415.1;Note=Hydrogenase nickel incorporation protein hypA. Homology to hypA2 of A. eutrophus of 50%25 (AAB60888). Probably plays a role in an hydrogenase nickel cofactor insertion step. Pfam: Hydrogenase eypression/synthesis hypA Tigrfam: hypA: hydrogenase expression/formation protein no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hypA;product=probable hydrogenase nickel inorporation protein hypA;protein_id=CAL96415.1;transl_table=11
AM406670.1	EMBL	gene	4158470	4159393	.	+	.	ID=gene3861;Name=hypB;gbkey=Gene;gene=hypB;gene_biotype=protein_coding;locus_tag=azo3800
AM406670.1	EMBL	CDS	4158470	4159393	.	+	0	ID=cds3796;Parent=gene3861;Dbxref=EnsemblGenomes-Gn:azo3800,EnsemblGenomes-Tr:CAL96416,GOA:A1KC60,InterPro:IPR003495,InterPro:IPR004392,InterPro:IPR012202,InterPro:IPR027417,UniProtKB/TrEMBL:A1KC60,NCBI_GP:CAL96416.1;Name=CAL96416.1;Note=Probable hydrogenase accessory protein HypB. Homology to hypB of E. coli of 56%25 (sprot|HYPB_ECOLI). IS REQUIRED FOR THE FORMATION OF HYDROGENASE ISOENZYMES. AFFECTS SOME ASPECT OF THE PROCESSING OF HYDROGENASES and NICKEL INCORPORATION scince HYPB GENE LESIONS CAN BE COMPLEMENTED BY HIGH NICKEL ION CONCENTRATION IN THE MEDIUM. Pfam: HypB/UreG nucleotide-binding domain Tigrfam: hypB: hydrogenase accessory protein Hyp no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hypB;product=probable hydrogenase accessory protein HypB;protein_id=CAL96416.1;transl_table=11
AM406670.1	EMBL	gene	4159390	4161762	.	+	.	ID=gene3862;Name=hypF;gbkey=Gene;gene=hypF;gene_biotype=protein_coding;locus_tag=azo3801
AM406670.1	EMBL	CDS	4159390	4161762	.	+	0	ID=cds3797;Parent=gene3862;Dbxref=EnsemblGenomes-Gn:azo3801,EnsemblGenomes-Tr:CAL96417,GOA:A1KC61,InterPro:IPR001792,InterPro:IPR004421,InterPro:IPR006070,InterPro:IPR011125,InterPro:IPR017945,InterPro:IPR017968,UniProtKB/TrEMBL:A1KC61,NCBI_GP:CAL96417.1;Name=CAL96417.1;Note=probable hydrogenase maturation protein HypF. Homology to hypF2 of A. eutrophus of 58%25 (sprot|HYF2_ALCEU). Involved in the hydrogenase maturation process. InterPro: Hydrogenase maturation protein HypF (IPR00421)%2C SuA5/yciO/yrdC family (IPR004388)%3B Acylphosphatase (IPR001792) Pfam: Acylphosphatase%2C yrdC domain Tigrfam: hypF: hydrogenase maturation protein H no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hypF;product=probable hydrogenase maturation protein HypF;protein_id=CAL96417.1;transl_table=11
AM406670.1	EMBL	gene	4161767	4162006	.	+	.	ID=gene3863;Name=hypC;gbkey=Gene;gene=hypC;gene_biotype=protein_coding;locus_tag=azo3802
AM406670.1	EMBL	CDS	4161767	4162006	.	+	0	ID=cds3798;Parent=gene3863;Dbxref=EnsemblGenomes-Gn:azo3802,EnsemblGenomes-Tr:CAL96418,InterPro:IPR001109,InterPro:IPR019812,UniProtKB/TrEMBL:A1KC62,NCBI_GP:CAL96418.1;Name=CAL96418.1;Note=Probable hydrogenase assembly chaperon HypC. Homology to hypC of R. leguminosarum of 61%25 (sprot|HYPC_RHILV). Forms a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation. Pfam: HypF/HypC family Tigrfam: hypC_hupF: hydrogenase assembly chaperone no signal peptide no TMHs%3B~Function unclear;gbkey=CDS;gene=hypC;product=probable hydrogenase assembly chaperon HypC;protein_id=CAL96418.1;transl_table=11
AM406670.1	EMBL	gene	4162003	4163145	.	+	.	ID=gene3864;Name=hypD;gbkey=Gene;gene=hypD;gene_biotype=protein_coding;locus_tag=azo3803
AM406670.1	EMBL	CDS	4162003	4163145	.	+	0	ID=cds3799;Parent=gene3864;Dbxref=EnsemblGenomes-Gn:azo3803,EnsemblGenomes-Tr:CAL96419,GOA:A1KC63,InterPro:IPR002780,UniProtKB/TrEMBL:A1KC63,NCBI_GP:CAL96419.1;Name=CAL96419.1;Note=Hydrogenase expression/formation protein hypD. Homology to hypD of A. eutrophus of 71%25 (sprot|HYPD_ALCEU). HypD is involved in hydrogenase formation. InterPro: Hydrogenase formation hypA (IPR002780) Pfam: Hydrogenase formation hypA family Tigrfam: hypD: hydrogenase expression/formation no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hypD;product=hydrogenase expression/formation protein HypD;protein_id=CAL96419.1;transl_table=11
AM406670.1	EMBL	gene	4163214	4164266	.	+	.	ID=gene3865;Name=hypE;gbkey=Gene;gene=hypE;gene_biotype=protein_coding;locus_tag=azo3804
AM406670.1	EMBL	CDS	4163214	4164266	.	+	0	ID=cds3800;Parent=gene3865;Dbxref=EnsemblGenomes-Gn:azo3804,EnsemblGenomes-Tr:CAL96420,GOA:A1KC64,InterPro:IPR000728,InterPro:IPR010918,InterPro:IPR011854,InterPro:IPR016188,UniProtKB/TrEMBL:A1KC64,NCBI_GP:CAL96420.1;Name=CAL96420.1;Note=Hydrogenase expression/formation protein hypE%2C 64%25 Identity to SProt%3BP31905%2CTrEMBL%3BQ6NB52(60%25 Identity)%2CQ83WU6. Has PF00586%2C AIR synthase related protein%2C N-terminal domain%3BIPR000728 AIR_synth%3B This family includes Hydrogen expression/formation protein%2C HypE%2C which may be involved inthe maturation of NifE hydrogenase%3B AIR synthase and FGAM synthase%2C which are involved in de novo purine biosynthesis%3B and selenide%2C water dikinase%2C an enzyme which synthesizes selenophosphate from selenide and ATP. PF02769%2C AIR synthase related protein%2C C-terminal domain%3BIPR010918 AIR_synth_C%3B This entry includes Hydrogen expression/formation protein%2C HypE%2C which may be involved in the maturation of NifE hydrogenase%3B AIR synthase and FGAM synthase%2C which are involved in de novo purine biosynthesis%3B and selenide%2C water dikinase%2C an enzyme which synthesizes selenophosphate from selenide and ATP.;gbkey=CDS;gene=hypE;product=hydrogenase expression/formation protein hypE;protein_id=CAL96420.1;transl_table=11
AM406670.1	EMBL	gene	4164280	4165737	.	+	.	ID=gene3866;Name=hoxA;gbkey=Gene;gene=hoxA;gene_biotype=protein_coding;locus_tag=azo3805
AM406670.1	EMBL	CDS	4164280	4165737	.	+	0	ID=cds3801;Parent=gene3866;Dbxref=EnsemblGenomes-Gn:azo3805,EnsemblGenomes-Tr:CAL96421,GOA:A1KC65,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,UniProtKB/TrEMBL:A1KC65,NCBI_GP:CAL96421.1;Name=CAL96421.1;Note=Hydrogenase transcriptional regulatory protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=hoxA;product=hydrogenase transcriptional regulatory protein;protein_id=CAL96421.1;transl_table=11
AM406670.1	EMBL	gene	4165753	4166049	.	-	.	ID=gene3867;Name=azo3806;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3806
AM406670.1	EMBL	CDS	4165753	4166049	.	-	0	ID=cds3802;Parent=gene3867;Dbxref=EnsemblGenomes-Gn:azo3806,EnsemblGenomes-Tr:CAL96422,UniProtKB/TrEMBL:A1KC66,NCBI_GP:CAL96422.1;Name=CAL96422.1;Note=Hypothetical protein%2C 33%25 Identity to TrEMBL%3BQ8XRA3 Has No domains%2C repeats%2C motifs or features could be predicted above threshold.;gbkey=CDS;product=Hypothetical protein;protein_id=CAL96422.1;transl_table=11
AM406670.1	EMBL	gene	4166203	4167198	.	+	.	ID=gene3868;Name=hoxB;gbkey=Gene;gene=hoxB;gene_biotype=protein_coding;locus_tag=azo3807
AM406670.1	EMBL	CDS	4166203	4167198	.	+	0	ID=cds3803;Parent=gene3868;Dbxref=EnsemblGenomes-Gn:azo3807,EnsemblGenomes-Tr:CAL96423,GOA:A1KC67,InterPro:IPR001821,InterPro:IPR006137,InterPro:IPR027394,UniProtKB/TrEMBL:A1KC67,NCBI_GP:CAL96423.1;Name=CAL96423.1;Note=Ferredoxin hydrogenase%2C small subunit. Homology to hoxB of A. hydrogenophilus of 75%25 (TREMBL:P94154). Hydrogenases catalyse the reversible oxidation of molecular hydrogen and play a vital role in anaerobic metabolism. InterPro: Hydrogenase (NiFe) small subunit HydA (IPR001821)%3B Respiroatory-chain NADH dehydrogenase 20 kD subunit (IPR006137) Tigrfam: hydA: hydrogenase (NiFe) small subunit (hydA) Pfam: NADH ubiquinone oxidoreductase no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=hoxB;product=ferredoxin hydrogenase%2C small subunit;protein_id=CAL96423.1;transl_table=11
AM406670.1	EMBL	gene	4167356	4168807	.	+	.	ID=gene3869;Name=hoxC;gbkey=Gene;gene=hoxC;gene_biotype=protein_coding;locus_tag=azo3808
AM406670.1	EMBL	CDS	4167356	4168807	.	+	0	ID=cds3804;Parent=gene3869;Dbxref=EnsemblGenomes-Gn:azo3808,EnsemblGenomes-Tr:CAL96424,GOA:A1KC68,InterPro:IPR001501,InterPro:IPR018194,InterPro:IPR029014,UniProtKB/TrEMBL:A1KC68,NCBI_GP:CAL96424.1;Name=CAL96424.1;Note=Probable ferredoxin hydrogenase%2C large subunit. Homology to hoxC of A. hydrogenophilus of 59%25 (trembl|P94155). InterPro: Nickel-dependent hydrogenases large subunit;gbkey=CDS;gene=hoxC;product=probable ferredoxin hydrogenase%2C large subunit;protein_id=CAL96424.1;transl_table=11
AM406670.1	EMBL	gene	4168926	4170437	.	+	.	ID=gene3870;Name=azo3809;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3809
AM406670.1	EMBL	CDS	4168926	4170437	.	+	0	ID=cds3805;Parent=gene3870;Dbxref=EnsemblGenomes-Gn:azo3809,EnsemblGenomes-Tr:CAL96425,InterPro:IPR000160,InterPro:IPR029787,UniProtKB/TrEMBL:A1KC69,NCBI_GP:CAL96425.1;Name=CAL96425.1;Note=Conserved hypothetical membrane protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96425.1;transl_table=11
AM406670.1	EMBL	gene	4170469	4171854	.	+	.	ID=gene3871;Name=hoxJ;gbkey=Gene;gene=hoxJ;gene_biotype=protein_coding;locus_tag=azo3810
AM406670.1	EMBL	CDS	4170469	4171854	.	+	0	ID=cds3806;Parent=gene3871;Dbxref=EnsemblGenomes-Gn:azo3810,EnsemblGenomes-Tr:CAL96426,GOA:A1KC70,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR013656,UniProtKB/TrEMBL:A1KC70,NCBI_GP:CAL96426.1;Name=CAL96426.1;Note=Putative hydrogen uptake histidine-kinase%2CATPbind_ATPase. IPR004358%3B Bact_sens_pr_C. IPR005467%3B His_kinase. IPR003661%3B His_kinA_N. IPR009082%3B His_kin_homodim. IPR001610%3B PAC. IPR000700%3B PAS-assoc_C. IPR000014%3B PAS_domain. Pfam: PF02518%3B HATPase_c. PF00512%3B HisKA. SMART: SM00387%3B HATPase_c. SM00388%3B HisKA. SM00086%3B PAC. SM00091%3B PAS.%3B~High confidence in function and specificity;gbkey=CDS;gene=hoxJ;product=hydrogen uptake histidine-kinase;protein_id=CAL96426.1;transl_table=11
AM406670.1	EMBL	gene	4171861	4172355	.	-	.	ID=gene3872;Name=ntaB;gbkey=Gene;gene=ntaB;gene_biotype=protein_coding;locus_tag=azo3811
AM406670.1	EMBL	CDS	4171861	4172355	.	-	0	ID=cds3807;Parent=gene3872;Dbxref=EnsemblGenomes-Gn:azo3811,EnsemblGenomes-Tr:CAL96427,GOA:A1KC71,InterPro:IPR002563,InterPro:IPR012349,UniProtKB/TrEMBL:A1KC71,NCBI_GP:CAL96427.1;Name=CAL96427.1;Note=Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) (NTA monooxygenase component B) (NTA-MO B). HYDROXYLATION OF NITRILOTRIACETATE. TREMBL:Q7W4Q0: 46%25 identity%2C 65%25 similarity InterPro: Flavin reductase-like domain Interpro:IPR002563 Pfam:PF01613 No signal peptide No transmembrane helices monomer_idh: isocitrate dehydrogenase NA%3B~High confidence in function and specificity;gbkey=CDS;gene=ntaB;product=probable nitrilotriacetate monooxygenase;protein_id=CAL96427.1;transl_table=11
AM406670.1	EMBL	gene	4172470	4173570	.	+	.	ID=gene3873;Name=mutY;gbkey=Gene;gene=mutY;gene_biotype=protein_coding;locus_tag=azo3812
AM406670.1	EMBL	CDS	4172470	4173570	.	+	0	ID=cds3808;Parent=gene3873;Dbxref=EnsemblGenomes-Gn:azo3812,EnsemblGenomes-Tr:CAL96428,GOA:A1KC72,InterPro:IPR003265,InterPro:IPR003583,InterPro:IPR003651,InterPro:IPR004035,InterPro:IPR004036,InterPro:IPR005760,InterPro:IPR011257,InterPro:IPR015797,InterPro:IPR023170,InterPro:IPR029119,UniProtKB/TrEMBL:A1KC72,NCBI_GP:CAL96428.1;Name=CAL96428.1;Note=A/G-specific adenine glycosylase (EC 3.2.2.-). ADENINE GLYCOSYLASE ACTIVE ON G-A MISPAIRS. MUTY ALSO CORRECTS ERROR-PRONE DNA SYNTHESIS PAST GO LESIONS WHICH ARE DUE TO THE OXIDATIVELY DAMAGED FORM OF GUANINE: 78-DIHYDRO-8- OXOGUANINE.%3B~Specificity unclear;gbkey=CDS;gene=mutY;product=putative A/G-specific adenine glycosylase;protein_id=CAL96428.1;transl_table=11
AM406670.1	EMBL	gene	4173767	4174366	.	-	.	ID=gene3874;Name=azo3813;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3813
AM406670.1	EMBL	CDS	4173767	4174366	.	-	0	ID=cds3809;Parent=gene3874;Dbxref=EnsemblGenomes-Gn:azo3813,EnsemblGenomes-Tr:CAL96429,GOA:A1KC73,InterPro:IPR003111,InterPro:IPR015947,UniProtKB/TrEMBL:A1KC73,NCBI_GP:CAL96429.1;Name=CAL96429.1;Note=Conserved hypothetical ATP-dependent protease La. Homology to rsc0402 of R. solanacearum of 44%25 (trembl|Q8Y2D4). N-terminal domain of the ATP-dependent protease La (LON)%2C present also in other bacterial ORFs. InterPro: ATP-dependent protease La (LON) domain (IPR003111). Pfam: ATP-dependent protease La (LON) domain. no signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical ATP-dependent protease La;protein_id=CAL96429.1;transl_table=11
AM406670.1	EMBL	gene	4174401	4175030	.	-	.	ID=gene3875;Name=ubiX;gbkey=Gene;gene=ubiX;gene_biotype=protein_coding;locus_tag=azo3814
AM406670.1	EMBL	CDS	4174401	4175030	.	-	0	ID=cds3810;Parent=gene3875;Dbxref=EnsemblGenomes-Gn:azo3814,EnsemblGenomes-Tr:CAL96430,GOA:A1KC74,InterPro:IPR003382,InterPro:IPR004507,UniProtKB/TrEMBL:A1KC74,NCBI_GP:CAL96430.1;Name=CAL96430.1;Note=Probable aromatic acid decarboxylase (EC 4.1.1.-). InterPro: Flavoprotein ubiX: phenylacrylic acid decarboxylase%3B~High confidence in function and specificity;gbkey=CDS;gene=ubiX;product=3-octaprenyl-4-hydroxybenzoate carboxy-lyase;protein_id=CAL96430.1;transl_table=11
AM406670.1	EMBL	gene	4175247	4175798	.	+	.	ID=gene3876;Name=azo3815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3815
AM406670.1	EMBL	CDS	4175247	4175798	.	+	0	ID=cds3811;Parent=gene3876;Dbxref=EnsemblGenomes-Gn:azo3815,EnsemblGenomes-Tr:CAL96431,InterPro:IPR010127,InterPro:IPR018968,UniProtKB/TrEMBL:A1KC75,NCBI_GP:CAL96431.1;Name=CAL96431.1;Note=Probable phasin. Homology to p8 of Sphingomonas sp. A1 of 49%25 (gi|51773776|dbj|BAD38885.1|(NBCI ENTREZ)). No domains predicted. No TMHs. No signal peptide.%2C%3B~Function unclear;gbkey=CDS;product=probable phasin;protein_id=CAL96431.1;transl_table=11
AM406670.1	EMBL	gene	4175897	4176934	.	-	.	ID=gene3877;Name=azo3816;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3816
AM406670.1	EMBL	CDS	4175897	4176934	.	-	0	ID=cds3812;Parent=gene3877;Dbxref=EnsemblGenomes-Gn:azo3816,EnsemblGenomes-Tr:CAL96432,GOA:A1KC76,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,InterPro:IPR020449,InterPro:IPR025628,InterPro:IPR029062,UniProtKB/TrEMBL:A1KC76,NCBI_GP:CAL96432.1;Name=CAL96432.1;Note=Putative AraC family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;product=putative AraC family transcriptional regulator;protein_id=CAL96432.1;transl_table=11
AM406670.1	EMBL	gene	4177099	4178040	.	+	.	ID=gene3878;Name=azo3817;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3817
AM406670.1	EMBL	CDS	4177099	4178040	.	+	0	ID=cds3813;Parent=gene3878;Dbxref=EnsemblGenomes-Gn:azo3817,EnsemblGenomes-Tr:CAL96433,GOA:A1KC77,InterPro:IPR003726,UniProtKB/TrEMBL:A1KC77,NCBI_GP:CAL96433.1;Name=CAL96433.1;Note=Conserved hypothetical protein. Homology to slr1189 of Synechocystis of 43%25 (trembl|P74718). Pfam: Homocystein S-transferase. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96433.1;transl_table=11
AM406670.1	EMBL	gene	4178048	4179208	.	-	.	ID=gene3879;Name=livK5;gbkey=Gene;gene=livK5;gene_biotype=protein_coding;locus_tag=azo3818
AM406670.1	EMBL	CDS	4178048	4179208	.	-	0	ID=cds3814;Parent=gene3879;Dbxref=EnsemblGenomes-Gn:azo3818,EnsemblGenomes-Tr:CAL96434,GOA:A1KC78,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:A1KC78,NCBI_GP:CAL96434.1;Name=CAL96434.1;Note=In enteric bacteria such as E. coli and Salmonella typhimurium%2C periplasmic binding proteins are found to participate in the transport of amino acids%2C sugars and ions. Leucine-specific binding protein are coded by livK and livJ. Similar to sprot|LIVK_SALTY (20%25) and to tremblnew|CAE26678 (39%25). Pfam (PF01094): Receptor family ligand binding region SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;gene=livK5;product=putative leucine-specific binding protein;protein_id=CAL96434.1;transl_table=11
AM406670.1	EMBL	gene	4179274	4180221	.	-	.	ID=gene3880;Name=livM6;gbkey=Gene;gene=livM6;gene_biotype=protein_coding;locus_tag=azo3819
AM406670.1	EMBL	CDS	4179274	4180221	.	-	0	ID=cds3815;Parent=gene3880;Dbxref=EnsemblGenomes-Gn:azo3819,EnsemblGenomes-Tr:CAL96435,GOA:A1KC79,InterPro:IPR001851,UniProtKB/TrEMBL:A1KC79,NCBI_GP:CAL96435.1;Name=CAL96435.1;Note=Putative branched-chain amino acid transporter permease. Homology to livM of E. coli of 32%25. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane. InterPro: Binding-system dependent bacterial transporters (araH livH/limM families) Pfam: Branched-chain amino acid transport system. signal peptide probable 10 TMHs%3B~Specificity unclear;gbkey=CDS;gene=livM6;product=putative branched-chain amino acid transport permease;protein_id=CAL96435.1;transl_table=11
AM406670.1	EMBL	gene	4180301	4181158	.	-	.	ID=gene3881;Name=azo3820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3820
AM406670.1	EMBL	CDS	4180301	4181158	.	-	0	ID=cds3816;Parent=gene3881;Dbxref=EnsemblGenomes-Gn:azo3820,EnsemblGenomes-Tr:CAL96436,GOA:A1KC80,InterPro:IPR001851,UniProtKB/TrEMBL:A1KC80,NCBI_GP:CAL96436.1;Name=CAL96436.1;Note=Branched-chain amino acid transport system typically composed of a periplasmic substrate-binding protein%2C one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system.The integral inner-membrane proteins translocate the substrate across the membrane. Similar to trembl|Q89C65 (46%25)%2C to sprot|LIVH_ECOLI (33%25) and to sprot|BRAD_PSEAE (30%25). Pfam (PF02653): Binding-system dependent bacterial transporters (araH%2C livH/limM families) TMHMM reporting seven Tmhelix. SignalP reporting Signal peptide.%3B~Specificity unclear;gbkey=CDS;product=ABC transporter permease protein;protein_id=CAL96436.1;transl_table=11
AM406670.1	EMBL	gene	4181166	4182143	.	-	.	ID=gene3882;Name=ncd2;gbkey=Gene;gene=ncd2;gene_biotype=protein_coding;locus_tag=azo3821
AM406670.1	EMBL	CDS	4181166	4182143	.	-	0	ID=cds3817;Parent=gene3882;Dbxref=EnsemblGenomes-Gn:azo3821,EnsemblGenomes-Tr:CAL96437,GOA:A1KC81,InterPro:IPR004136,InterPro:IPR013785,UniProtKB/TrEMBL:A1KC81,NCBI_GP:CAL96437.1;Name=CAL96437.1;Note=2-nitropropane dioxygenase precursor (EC 1.13.11.32) (Nitroalkane oxidase) (2-NPD). SPROT:Q01284: 28%25 identity%2C 44%25 similarity CATALYZES THE OXIDATION OF NITROALKANES TO PRODUCE THE CORRESPONDING CARBONYL COMPOUNDS. IT ACTS ON 2-NITROPROPANE BETTER THAN ON NITROETHANE AND 1-NITROPROPANE AND ANIONIC FORMS OF NITROALKANES ARE MUCH BETTER SUBSTRATES THAN ARE NEUTRAL FORMS. InterPro: 2-nitropropane dioxygenase InterPro%3B IPR004136%3B 2nprop_dioxygen. InterPro%3B IPR003009%3B FMN_enzyme. Pfam%3B PF03060%3B NPD thiE: thiamine-phosphate pyrophosphoryl Non-secretory protein with signal peptide probability:0.004 Absence of TMH's%3B~High confidence in function and specificity;gbkey=CDS;gene=ncd2;product=putative 2-nitropropane dioxygenase;protein_id=CAL96437.1;transl_table=11
AM406670.1	EMBL	gene	4182309	4182734	.	+	.	ID=gene3883;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=azo3822
AM406670.1	EMBL	CDS	4182309	4182734	.	+	0	ID=cds3818;Parent=gene3883;Dbxref=EnsemblGenomes-Gn:azo3822,EnsemblGenomes-Tr:CAL96438,GOA:A1KC82,InterPro:IPR001185,InterPro:IPR019823,NCBI_GP:CAL96438.1;Name=CAL96438.1;Note=Large-conductance mechanosensitive channel. Forms a nonselective ion channel of 2.5 ns conductance (By similarity). mscL: large conductance mechanosensitive%3B~High confidence in function and specificity;gbkey=CDS;gene=mscL;product=large-conductance mechanosensitive channel;protein_id=CAL96438.1;transl_table=11
AM406670.1	EMBL	gene	4182759	4183517	.	-	.	ID=gene3884;Name=ycbL;gbkey=Gene;gene=ycbL;gene_biotype=protein_coding;locus_tag=azo3823
AM406670.1	EMBL	CDS	4182759	4183517	.	-	0	ID=cds3819;Parent=gene3884;Dbxref=EnsemblGenomes-Gn:azo3823,EnsemblGenomes-Tr:CAL96439,GOA:A1KC83,InterPro:IPR001279,UniProtKB/TrEMBL:A1KC83,NCBI_GP:CAL96439.1;Name=CAL96439.1;Note=Hypothetical protein ycbL. TREMBL:Q7P1X5-63%25 identity. Interpro:IPR001279-Blactamase like Pfam-GlyoxylaseII family relationship. Phosphoribosylglycinamide synthetase%2CRespiratory chain NADH dehydrogenase%3B KH domain and RTX toxin acyltransferase family relationship. ispD: 4-diphosphocytidyl-2C-methyl-D-ery%3B~High confidence in function and specificity;gbkey=CDS;gene=ycbL;product=conserved hypothetical protein;protein_id=CAL96439.1;transl_table=11
AM406670.1	EMBL	gene	4183561	4184352	.	-	.	ID=gene3885;Name=imp;gbkey=Gene;gene=imp;gene_biotype=protein_coding;locus_tag=azo3824
AM406670.1	EMBL	CDS	4183561	4184352	.	-	0	ID=cds3820;Parent=gene3885;Dbxref=EnsemblGenomes-Gn:azo3824,EnsemblGenomes-Tr:CAL96440,GOA:A1KC84,InterPro:IPR000760,InterPro:IPR011809,InterPro:IPR020583,UniProtKB/TrEMBL:A1KC84,NCBI_GP:CAL96440.1;Name=CAL96440.1;Note=Inositol-1(or4)-monophosphatase 3IMPase3)(IMP3)(Inositol monophosphatase 3).Responsible for the provision of inositol required for synthesis of phosphatidylinositol and polyphosphoinositides. 26%25 Inositol_P. Pfam:PF00459%3B Inositol_P%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=imp;product=putative inositol monophosphatase protein;protein_id=CAL96440.1;transl_table=11
AM406670.1	EMBL	gene	4184498	4185523	.	+	.	ID=gene3886;Name=fbpA2;gbkey=Gene;gene=fbpA2;gene_biotype=protein_coding;locus_tag=azo3825
AM406670.1	EMBL	CDS	4184498	4185523	.	+	0	ID=cds3821;Parent=gene3886;Dbxref=EnsemblGenomes-Gn:azo3825,EnsemblGenomes-Tr:CAL96441,InterPro:IPR026045,UniProtKB/TrEMBL:A1KC85,NCBI_GP:CAL96441.1;Name=CAL96441.1;Note=Part of the ABC transporter complex FbpABC involved in ferric import. Similar to the putative periplasmic-binding protein FbpA precursor in A. pleuropneumoniae. 39%25 SBP_bac_1. Pfam:PF01547%3B SBP_bac_1%3B 1. Signal peptide:1 TMHelix:1%3B~Specificity unclear;gbkey=CDS;gene=fbpA2;product=putative ferric transport system%2C periplasmic-binding protein;protein_id=CAL96441.1;transl_table=11
AM406670.1	EMBL	gene	4185569	4186576	.	+	.	ID=gene3887;Name=fbpC2;gbkey=Gene;gene=fbpC2;gene_biotype=protein_coding;locus_tag=azo3826
AM406670.1	EMBL	CDS	4185569	4186576	.	+	0	ID=cds3822;Parent=gene3887;Dbxref=EnsemblGenomes-Gn:azo3826,EnsemblGenomes-Tr:CAL96442,GOA:A1KC86,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR013611,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KC86,NCBI_GP:CAL96442.1;Name=CAL96442.1;Note=Ferric cations import ATP-binding protein fbpC (EC 3.6.3.30).Part of the ABC transporter complex fbpABC (TC 3.A.1.10.1) involved in ferric cations import. Responsible for energy coupling to the transport system. 41%25 AAA_ATPase. IPR003439%3B ABC_transporter. Pfam: PF00005%3BABC_tran%3B 1.%3B~Specificity unclear;gbkey=CDS;gene=fbpC2;product=Fe3+-transporting ATPase;protein_id=CAL96442.1;transl_table=11
AM406670.1	EMBL	gene	4186656	4188308	.	+	.	ID=gene3888;Name=azo3827;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3827
AM406670.1	EMBL	CDS	4186656	4188308	.	+	0	ID=cds3823;Parent=gene3888;Dbxref=EnsemblGenomes-Gn:azo3827,EnsemblGenomes-Tr:CAL96443,GOA:A1KC87,InterPro:IPR000515,UniProtKB/TrEMBL:A1KC87,NCBI_GP:CAL96443.1;Name=CAL96443.1;Note=Region start changed from 4186498 to 4186630 (-132 bases);gbkey=CDS;product=putative ferrric transport system%2C permease protein;protein_id=CAL96443.1;transl_table=11
AM406670.1	EMBL	gene	4188333	4189109	.	+	.	ID=gene3889;Name=glpR;gbkey=Gene;gene=glpR;gene_biotype=protein_coding;locus_tag=azo3828
AM406670.1	EMBL	CDS	4188333	4189109	.	+	0	ID=cds3824;Parent=gene3889;Dbxref=EnsemblGenomes-Gn:azo3828,EnsemblGenomes-Tr:CAL96444,GOA:A1KC88,InterPro:IPR001034,InterPro:IPR011991,InterPro:IPR014036,InterPro:IPR018356,UniProtKB/TrEMBL:A1KC88,NCBI_GP:CAL96444.1;Name=CAL96444.1;Note=Glycerol-3-phosphate regulon repressor. 26%25 HTH_DeoR. Pfam:PF00455%3B DeoR%3B 1. Nucleic acid binding motif%2C present.%3B~High confidence in function and specificity;gbkey=CDS;gene=glpR;product=putative glycerol-3-phosphate regulon repressor;protein_id=CAL96444.1;transl_table=11
AM406670.1	EMBL	gene	4189133	4190521	.	+	.	ID=gene3890;Name=eutB;gbkey=Gene;gene=eutB;gene_biotype=protein_coding;locus_tag=azo3829
AM406670.1	EMBL	CDS	4189133	4190521	.	+	0	ID=cds3825;Parent=gene3890;Dbxref=EnsemblGenomes-Gn:azo3829,EnsemblGenomes-Tr:CAL96445,GOA:A1KC89,InterPro:IPR010628,InterPro:IPR013785,UniProtKB/TrEMBL:A1KC89,NCBI_GP:CAL96445.1;Name=CAL96445.1;Note=Probable ethanolamine ammonia-lyase (EC 4.3.1.7) large subunit. Homology to eutB of S. typhimurium of 50%25 (trembl|Q8XUQ9) Catalyzes the deamination of various vicinal amino- alcohols to oxo compounds. no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=eutB;product=probable ethanolamine ammonia-lyase large subunit;protein_id=CAL96445.1;transl_table=11
AM406670.1	EMBL	gene	4190532	4191356	.	+	.	ID=gene3891;Name=eutC;gbkey=Gene;gene=eutC;gene_biotype=protein_coding;locus_tag=azo3830
AM406670.1	EMBL	CDS	4190532	4191356	.	+	0	ID=cds3826;Parent=gene3891;Dbxref=EnsemblGenomes-Gn:azo3830,EnsemblGenomes-Tr:CAL96446,GOA:A1KC90,InterPro:IPR009246,UniProtKB/TrEMBL:A1KC90,NCBI_GP:CAL96446.1;Name=CAL96446.1;Note=Ethanolamine ammonia-lyase (EC 4.3.1.7) small subunit. Homology to eutC of S. typhimurium of 35%25 (sprot|EUTC_SALTY) catalyzes the deamination of various vicinal amino- alcohols to oxo compounds. no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=eutC;product=putative ethanolamine ammonia-lyase small subunit;protein_id=CAL96446.1;transl_table=11
AM406670.1	EMBL	gene	4191496	4192371	.	+	.	ID=gene3892;Name=azo3831;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3831
AM406670.1	EMBL	CDS	4191496	4192371	.	+	0	ID=cds3827;Parent=gene3892;Dbxref=EnsemblGenomes-Gn:azo3831,EnsemblGenomes-Tr:CAL96447,UniProtKB/TrEMBL:A1KC91,NCBI_GP:CAL96447.1;Name=CAL96447.1;Note=Conserved hypothetical secreted protein. Homology to rpa0361 of R. palustris off 67%25 (tremblnew|CAE25805). no domains predicted .signal peptide. TMH in signal peptide%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96447.1;transl_table=11
AM406670.1	EMBL	gene	4192520	4193338	.	-	.	ID=gene3893;Name=azo3832;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3832
AM406670.1	EMBL	CDS	4192520	4193338	.	-	0	ID=cds3828;Parent=gene3893;Dbxref=EnsemblGenomes-Gn:azo3832,EnsemblGenomes-Tr:CAL96448,InterPro:IPR024370,UniProtKB/TrEMBL:A1KC92,NCBI_GP:CAL96448.1;Name=CAL96448.1;Note=Putative ABC-type tungstate transport system%2Cpermease component.%3B~Function unclear;gbkey=CDS;product=ABC-type tungstate transport system%2C permease component;protein_id=CAL96448.1;transl_table=11
AM406670.1	EMBL	gene	4193453	4194556	.	+	.	ID=gene3894;Name=azo3833;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3833
AM406670.1	EMBL	CDS	4193453	4194556	.	+	0	ID=cds3829;Parent=gene3894;Dbxref=EnsemblGenomes-Gn:azo3833,EnsemblGenomes-Tr:CAL96449,GOA:A1KC93,InterPro:IPR000847,InterPro:IPR011991,InterPro:IPR024370,UniProtKB/TrEMBL:A1KC93,NCBI_GP:CAL96449.1;Name=CAL96449.1;Note=31%25 HTH_9%3B 1. InterPro: IPR003725%3B ModE:Molybdenum-binding protein N-terminal. ModE are involved in molybdenum transport.These proteins acts both as a repressor and activator of the mod and moa operons%2Crespectively%2C depending on the properties of the binding site.%3B~High confidence in function and specificity;gbkey=CDS;product=putative molybdenum-binding protein;protein_id=CAL96449.1;transl_table=11
AM406670.1	EMBL	gene	4194613	4195911	.	-	.	ID=gene3895;Name=azo3834;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3834
AM406670.1	EMBL	CDS	4194613	4195911	.	-	0	ID=cds3830;Parent=gene3895;Dbxref=EnsemblGenomes-Gn:azo3834,EnsemblGenomes-Tr:CAL96450,GOA:A1KC94,InterPro:IPR009056,InterPro:IPR010538,UniProtKB/TrEMBL:A1KC94,NCBI_GP:CAL96450.1;Name=CAL96450.1;Note=Conserved hypothetical protein. Homology to vv12967 of V. vulnificus of 47%25 (trembl|Q8D8K5). Pfam: DUF1111. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96450.1;transl_table=11
AM406670.1	EMBL	gene	4195950	4197269	.	-	.	ID=gene3896;Name=pgtC;gbkey=Gene;gene=pgtC;gene_biotype=protein_coding;locus_tag=azo3835
AM406670.1	EMBL	CDS	4195950	4197269	.	-	0	ID=cds3831;Parent=gene3896;Dbxref=EnsemblGenomes-Gn:azo3835,EnsemblGenomes-Tr:CAL96451,InterPro:IPR006311,UniProtKB/TrEMBL:A1KC95,NCBI_GP:CAL96451.1;Name=CAL96451.1;Note=Phosphoglycerate transport regulatory protein pgtC precursor.Required for pgtP expression it may act jointly with the pgtA/pgtB signaling proteins.29%25 SBP_bac_1: Bacterial extracellular solute-binding protein family 1. Pfam:PF01547%3B SBP_bac_1%3B 1. Signal peptide:present.%3B~High confidence in function and specificity;gbkey=CDS;gene=pgtC;product=putative regulatory lipoprotein;protein_id=CAL96451.1;transl_table=11
AM406670.1	EMBL	gene	4197290	4199275	.	-	.	ID=gene3897;Name=azo3836;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3836
AM406670.1	EMBL	CDS	4197290	4199275	.	-	0	ID=cds3832;Parent=gene3897;Dbxref=EnsemblGenomes-Gn:azo3836,EnsemblGenomes-Tr:CAL96452,GOA:A1KC96,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1KC96,NCBI_GP:CAL96452.1;Name=CAL96452.1;Note=Probable Iron-regulated outer membrane TonB-dependent receptor. 35%25 TonB_receptor.IPR010917%3B TonB_recept_C.IPR010105%3B TonB_siderophor. Pfam:PF00593%3B TonB_dep_Rec%3B 1. TIGRFAMs:TIGR01783%3B TonB-siderophor%3B 1. Signal peptide:present.%3B~Function unclear;gbkey=CDS;product=probable TonB-dependent receptor;protein_id=CAL96452.1;transl_table=11
AM406670.1	EMBL	gene	4199407	4200564	.	-	.	ID=gene3898;Name=modC1;gbkey=Gene;gene=modC1;gene_biotype=protein_coding;locus_tag=azo3837
AM406670.1	EMBL	CDS	4199407	4200564	.	-	0	ID=cds3833;Parent=gene3898;Dbxref=EnsemblGenomes-Gn:azo3837,EnsemblGenomes-Tr:CAL96453,GOA:A1KC97,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005116,InterPro:IPR008995,InterPro:IPR011868,InterPro:IPR015852,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KC97,NCBI_GP:CAL96453.1;Name=CAL96453.1;Note=80%25 AAA_ATPase superfamily. IPR003439%3B ABC_transporter. IPR008995%3B MOP_like:molybdenum-pterin binding domain.IPR005116%3B TOBE. Pfam:PF00005%3B ABC_tran%3B 1.PF03459%3B TOBE%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=modC1;product=putative molybdenum transport system%2C ATP-binding protein;protein_id=CAL96453.1;transl_table=11
AM406670.1	EMBL	gene	4200561	4201241	.	-	.	ID=gene3899;Name=modB1;gbkey=Gene;gene=modB1;gene_biotype=protein_coding;locus_tag=azo3838
AM406670.1	EMBL	CDS	4200561	4201241	.	-	0	ID=cds3834;Parent=gene3899;Dbxref=EnsemblGenomes-Gn:azo3838,EnsemblGenomes-Tr:CAL96454,GOA:A1KC98,InterPro:IPR000515,InterPro:IPR011867,UniProtKB/TrEMBL:A1KC98,NCBI_GP:CAL96454.1;Name=CAL96454.1;Note=72%25 BPD_transp.Binding-protein-dependent transport systems inner membrane component. Pfam:PF00528%3B BPD_transp%3B 1. TMHelix:6%3B~High confidence in function and specificity;gbkey=CDS;gene=modB1;product=putative molybdenum transport system permease protein;protein_id=CAL96454.1;transl_table=11
AM406670.1	EMBL	gene	4201261	4202022	.	-	.	ID=gene3900;Name=modA1;gbkey=Gene;gene=modA1;gene_biotype=protein_coding;locus_tag=azo3839
AM406670.1	EMBL	CDS	4201261	4202022	.	-	0	ID=cds3835;Parent=gene3900;Dbxref=EnsemblGenomes-Gn:azo3839,EnsemblGenomes-Tr:CAL96455,GOA:A1KC99,InterPro:IPR005950,UniProtKB/TrEMBL:A1KC99,NCBI_GP:CAL96455.1;Name=CAL96455.1;Note=73%25 MolP_ABC_transpt.IPR000437%3B prok_lipoprot_S. IPR006059%3B SBP_bac_1. Pfam:PF01547%3B SBP_bac_1%3B 1. TIGRFAMs:TIGR01256%3B modA%3B 1. Signal peptide: present.%3B~High confidence in function and specificity;gbkey=CDS;gene=modA1;product=putative molybdate transport system%2C periplasmic-binding protein;protein_id=CAL96455.1;transl_table=11
AM406670.1	EMBL	gene	4202077	4202904	.	-	.	ID=gene3901;Name=modE;gbkey=Gene;gene=modE;gene_biotype=protein_coding;locus_tag=azo3840
AM406670.1	EMBL	CDS	4202077	4202904	.	-	0	ID=cds3836;Parent=gene3901;Dbxref=EnsemblGenomes-Gn:azo3840,EnsemblGenomes-Tr:CAL96456,GOA:A1KCA0,InterPro:IPR000847,InterPro:IPR003725,InterPro:IPR004606,InterPro:IPR005116,InterPro:IPR008995,InterPro:IPR011991,InterPro:IPR016462,UniProtKB/TrEMBL:A1KCA0,NCBI_GP:CAL96456.1;Name=CAL96456.1;Note=80%25 ModE.IPR004606%3B Mop.IPR008995%3B MOP_like.IPR005116%3B TOBE.Molybdenum-binding protein N-terminal. Pfam:PF02573%3B HTH_9%3B 1.PF03459%3B TOBE%3B 2. TIGRFAMs:TIGR00637%3B ModE_repress%3B 1:ModE molybdate transport.TIGR00638%3B Mop%3B 2.%3B~High confidence in function and specificity;gbkey=CDS;gene=modE;product=putative molybdenum transport protein;protein_id=CAL96456.1;transl_table=11
AM406670.1	EMBL	gene	4203085	4203513	.	+	.	ID=gene3902;Name=modG;gbkey=Gene;gene=modG;gene_biotype=protein_coding;locus_tag=azo3841
AM406670.1	EMBL	CDS	4203085	4203513	.	+	0	ID=cds3837;Parent=gene3902;Dbxref=EnsemblGenomes-Gn:azo3841,EnsemblGenomes-Tr:CAL96457,GOA:A1KCA1,InterPro:IPR004606,InterPro:IPR005116,InterPro:IPR008995,UniProtKB/TrEMBL:A1KCA1,NCBI_GP:CAL96457.1;Name=CAL96457.1;Note=80%25 Mop.IPR008995%3BMOP_like.IPR005116%3BTOBE.InterPro: Molybdenum-pterin binding domain. Mop: molybdenum-pterin binding domain Pfam: PF03459%3B TOBE%3B 2. TIGRFAMs:TIGR00638%3B Mop%3B 2.%3B~High confidence in function and specificity;gbkey=CDS;gene=modG;product=putative molybdenum-pterin-binding-protein;protein_id=CAL96457.1;transl_table=11
AM406670.1	EMBL	gene	4203575	4204612	.	+	.	ID=gene3903;Name=modC2;gbkey=Gene;gene=modC2;gene_biotype=protein_coding;locus_tag=azo3842
AM406670.1	EMBL	CDS	4203575	4204612	.	+	0	ID=cds3838;Parent=gene3903;Dbxref=EnsemblGenomes-Gn:azo3842,EnsemblGenomes-Tr:CAL96458,GOA:A1KCA2,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KCA2,NCBI_GP:CAL96458.1;Name=CAL96458.1;Note=39%25 AAA_ATPase superfamily. IPR003439%3B ABC_transporter. IPR008995%3B MOP_like:molybdenum-pterin binding domain.IPR005116%3B TOBE. Pfam:PF00005%3B ABC_tran%3B 1.PF03459%3B TOBE%3B 1.%3B~High confidence in function and specificity;gbkey=CDS;gene=modC2;product=putative molybdate transport system ATP-binding protein;protein_id=CAL96458.1;transl_table=11
AM406670.1	EMBL	gene	4204593	4205462	.	-	.	ID=gene3904;Name=azo3843;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3843
AM406670.1	EMBL	CDS	4204593	4205462	.	-	0	ID=cds3839;Parent=gene3904;Dbxref=EnsemblGenomes-Gn:azo3843,EnsemblGenomes-Tr:CAL96459,UniProtKB/TrEMBL:A1KCA3,NCBI_GP:CAL96459.1;Name=CAL96459.1;Note=Putative exported protein.SignalP reporting signal peptice. Most likely cleavage site between pos. 27 and 28: AHA-AP%3B~Function unclear;gbkey=CDS;product=putative exported protein;protein_id=CAL96459.1;transl_table=11
AM406670.1	EMBL	gene	4205489	4207765	.	-	.	ID=gene3905;Name=azo3844;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3844
AM406670.1	EMBL	CDS	4205489	4207765	.	-	0	ID=cds3840;Parent=gene3905;Dbxref=EnsemblGenomes-Gn:azo3844,EnsemblGenomes-Tr:CAL96460,GOA:A1KCA4,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1KCA4,NCBI_GP:CAL96460.1;Name=CAL96460.1;Note=Region start changed from 4207859 to 4207739 (-120 bases);gbkey=CDS;product=putative TonB-dependent receptor;protein_id=CAL96460.1;transl_table=11
AM406670.1	EMBL	gene	4208004	4208693	.	-	.	ID=gene3906;Name=modB2;gbkey=Gene;gene=modB2;gene_biotype=protein_coding;locus_tag=azo3845
AM406670.1	EMBL	CDS	4208004	4208693	.	-	0	ID=cds3841;Parent=gene3906;Dbxref=EnsemblGenomes-Gn:azo3845,EnsemblGenomes-Tr:CAL96461,GOA:A1KCA5,InterPro:IPR000515,UniProtKB/TrEMBL:A1KCA5,NCBI_GP:CAL96461.1;Name=CAL96461.1;Note=36%25 BPD_transp.Binding-protein-dependent transport systems inner membrane component. Pfam:PF00528%3B BPD_transp%3B 1. TMHelix:5 Signal peptide:present%3B~High confidence in function and specificity;gbkey=CDS;gene=modB2;product=putative molybdenum ABC transporter permease protein;protein_id=CAL96461.1;transl_table=11
AM406670.1	EMBL	gene	4208693	4209478	.	-	.	ID=gene3907;Name=modA2;gbkey=Gene;gene=modA2;gene_biotype=protein_coding;locus_tag=azo3846
AM406670.1	EMBL	CDS	4208693	4209478	.	-	0	ID=cds3842;Parent=gene3907;Dbxref=EnsemblGenomes-Gn:azo3846,EnsemblGenomes-Tr:CAL96462,GOA:A1KCA6,InterPro:IPR005950,UniProtKB/TrEMBL:A1KCA6,NCBI_GP:CAL96462.1;Name=CAL96462.1;Note=23%25 MolP_ABC_transpt.IPR000437%3B prok_lipoprot_S. IPR006059%3B SBP_bac_1. Pfam:PF01547%3B SBP_bac_1%3B 1. TIGRFAMs:TIGR01256%3B modA%3B 1. Signal peptide: present.%3B~High confidence in function and specificity;gbkey=CDS;gene=modA2;product=putative molybdate transport system substrate-binding protein;protein_id=CAL96462.1;transl_table=11
AM406670.1	EMBL	gene	4209537	4209923	.	-	.	ID=gene3908;Name=azo3847;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3847
AM406670.1	EMBL	CDS	4209537	4209923	.	-	0	ID=cds3843;Parent=gene3908;Dbxref=EnsemblGenomes-Gn:azo3847,EnsemblGenomes-Tr:CAL96463,UniProtKB/TrEMBL:A1KCA7,NCBI_GP:CAL96463.1;Name=CAL96463.1;Note=conserved hypothetical protein. Homology to Daro03003735 of Dechloromonas aromatica of 35%25 (gi|41722661|ref|ZP_00149650.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96463.1;transl_table=11
AM406670.1	EMBL	gene	4210313	4212361	.	+	.	ID=gene3909;Name=yhjG;gbkey=Gene;gene=yhjG;gene_biotype=protein_coding;locus_tag=azo3848
AM406670.1	EMBL	CDS	4210313	4212361	.	+	0	ID=cds3844;Parent=gene3909;Dbxref=EnsemblGenomes-Gn:azo3848,EnsemblGenomes-Tr:CAL96464,InterPro:IPR007844,UniProtKB/TrEMBL:A1KCA8,NCBI_GP:CAL96464.1;Name=CAL96464.1;Note=Function unclear;gbkey=CDS;gene=yhjG;product=outer membrane protein;protein_id=CAL96464.1;transl_table=11
AM406670.1	EMBL	gene	4212375	4214444	.	-	.	ID=gene3910;Name=azo3849;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3849
AM406670.1	EMBL	CDS	4212375	4214444	.	-	0	ID=cds3845;Parent=gene3910;Dbxref=EnsemblGenomes-Gn:azo3849,EnsemblGenomes-Tr:CAL96465,GOA:A1KCA9,InterPro:IPR000014,InterPro:IPR000160,InterPro:IPR001610,InterPro:IPR001633,InterPro:IPR029787,UniProtKB/TrEMBL:A1KCA9,NCBI_GP:CAL96465.1;Name=CAL96465.1;Note=GGDEF/EAL/PAS/PAC-domain containing protein;gbkey=CDS;product=GGDEF/EAL/PAS/PAC-domain containing protein;protein_id=CAL96465.1;transl_table=11
AM406670.1	EMBL	gene	4214513	4216465	.	-	.	ID=gene3911;Name=recD;gbkey=Gene;gene=recD;gene_biotype=protein_coding;locus_tag=azo3850
AM406670.1	EMBL	CDS	4214513	4216465	.	-	0	ID=cds3846;Parent=gene3911;Dbxref=EnsemblGenomes-Gn:azo3850,EnsemblGenomes-Tr:CAL96466,GOA:A1KCB0,InterPro:IPR003593,InterPro:IPR006344,InterPro:IPR027417,InterPro:IPR027785,UniProtKB/TrEMBL:A1KCB0,NCBI_GP:CAL96466.1;Name=CAL96466.1;Note=Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) (Exodeoxyribonuclease V 67 kDa polypeptide). EXHIBITS SEVERAL CATALYTIC ACTIVITIES INCLUDING ATP-DEPENDENT EXONUCLEASE ATP-STIMULATED ENDONUCLEASE ATP-DEPENDENT UNWINDING AND DNA-DEPENDENT ATPASE ACTIVITIES. STRAND CLEAVAGE OCCURS 5 TO 3 DURING THE UNWINDING OF DUPLEX DNA AT CHI SEQUENCES WHICH LOCALLY STIMULATE RECOMBINATION. InterPro: AAA ATPase superfamily%3B~High confidence in function and specificity;gbkey=CDS;gene=recD;product=DNA helicase%2C ATP-dependent dsDNA/ssDNA exonuclease V subunit%2C ssDNA endonuclease;protein_id=CAL96466.1;transl_table=11
AM406670.1	EMBL	gene	4216462	4220187	.	-	.	ID=gene3912;Name=recB;gbkey=Gene;gene=recB;gene_biotype=protein_coding;locus_tag=azo3851
AM406670.1	EMBL	CDS	4216462	4220187	.	-	0	ID=cds3847;Parent=gene3912;Dbxref=EnsemblGenomes-Gn:azo3851,EnsemblGenomes-Tr:CAL96467,GOA:A1KCB1,InterPro:IPR000212,InterPro:IPR004586,InterPro:IPR011335,InterPro:IPR011604,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR027417,UniProtKB/TrEMBL:A1KCB1,NCBI_GP:CAL96467.1;Name=CAL96467.1;Note=Exodeoxyribonuclease V beta chain (EC 3.1.11.5) (Exodeoxyribonuclease V 135 KDA polypeptide). REQUIRED FOR EFFICIENT DNA REPAIR%3B IT CATALYZES THE UNWINDING OF DOUBLE-STRANDED DNA AND THE CLEAVAGE OF SINGLE- STRANDED DNA AND IT STIMULATES LOCAL GENETIC RECOMBINATION. ALL OF THESE ACTIVITIES REQUIRE CONCOMITANT HYDROLYSIS OF ATP.%3B~High confidence in function and specificity;gbkey=CDS;gene=recB;product=ATP-dependent exoDNAse beta subunit;protein_id=CAL96467.1;transl_table=11
AM406670.1	EMBL	gene	4220373	4222526	.	+	.	ID=gene3913;Name=irgA2;gbkey=Gene;gene=irgA2;gene_biotype=protein_coding;locus_tag=azo3852
AM406670.1	EMBL	CDS	4220373	4222526	.	+	0	ID=cds3848;Parent=gene3913;Dbxref=EnsemblGenomes-Gn:azo3852,EnsemblGenomes-Tr:CAL96468,GOA:A1KCB2,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:A1KCB2,NCBI_GP:CAL96468.1;Name=CAL96468.1;Note=24%25 TonB_boxC. Pfam:PF00593%3B TonB_dep_Rec%3B 1. Signal peptide present.%3B~High confidence in function and specificity;gbkey=CDS;gene=irgA2;product=putative TonB-dependent receptor;protein_id=CAL96468.1;transl_table=11
AM406670.1	EMBL	gene	4222614	4223768	.	+	.	ID=gene3914;Name=azo3853;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3853
AM406670.1	EMBL	CDS	4222614	4223768	.	+	0	ID=cds3849;Parent=gene3914;Dbxref=EnsemblGenomes-Gn:azo3853,EnsemblGenomes-Tr:CAL96469,GOA:A1KCB3,InterPro:IPR002052,InterPro:IPR007848,InterPro:IPR029063,UniProtKB/TrEMBL:A1KCB3,NCBI_GP:CAL96469.1;Name=CAL96469.1;Note=Conserved hypothetical protein%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96469.1;transl_table=11
AM406670.1	EMBL	gene	4223747	4224304	.	+	.	ID=gene3915;Name=ligT;gbkey=Gene;gene=ligT;gene_biotype=protein_coding;locus_tag=azo3854
AM406670.1	EMBL	CDS	4223747	4224304	.	+	0	ID=cds3850;Parent=gene3915;Dbxref=EnsemblGenomes-Gn:azo3854,EnsemblGenomes-Tr:CAL96470,GOA:A1KCB4,InterPro:IPR004175,InterPro:IPR009097,UniProtKB/TrEMBL:A1KCB4,NCBI_GP:CAL96470.1;Name=CAL96470.1;Note=2-5 RNA ligase (EC 6.5.1.-). Specifically ligates tRNA half-molecules containing nucleoside base modifications and shows a preference among different tRNA species. Acts in the absence of ATP to form a 2-5 phosphodiester linkage.;gbkey=CDS;gene=ligT;product=2'-5' RNA ligase;protein_id=CAL96470.1;transl_table=11
AM406670.1	EMBL	gene	4224451	4226037	.	+	.	ID=gene3916;Name=azo3855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3855
AM406670.1	EMBL	CDS	4224451	4226037	.	+	0	ID=cds3851;Parent=gene3916;Dbxref=EnsemblGenomes-Gn:azo3855,EnsemblGenomes-Tr:CAL96471,GOA:A1KCB5,InterPro:IPR001952,InterPro:IPR017849,InterPro:IPR017850,UniProtKB/TrEMBL:A1KCB5,NCBI_GP:CAL96471.1;Name=CAL96471.1;Note=Alkaline phosphatase (EC 3.1.3.1) (ALP)is a zinc and magnesium-containing metalloenzyme which hydrolyzes phosphate esters%2C optimally at high pH.It is found in nearly all living organisms%2Cwith the exception of some plants. 30%25 Alk_phosphtse.Alkaline phosphatase family Pfam:PF00245%3B alk_phosphatase%3B 1. Signal peptide present.%3B~High confidence in function and specificity;gbkey=CDS;product=putative alkaline phosphatase;protein_id=CAL96471.1;transl_table=11
AM406670.1	EMBL	gene	4226137	4226919	.	+	.	ID=gene3917;Name=azo3856;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3856
AM406670.1	EMBL	CDS	4226137	4226919	.	+	0	ID=cds3852;Parent=gene3917;Dbxref=EnsemblGenomes-Gn:azo3856,EnsemblGenomes-Tr:CAL96472,UniProtKB/TrEMBL:A1KCB6,NCBI_GP:CAL96472.1;Name=CAL96472.1;Note=Conserved hypothetical secreted protein. Homology to Avin02002740 of Azotobacter vinelandii of 66%25 (gi|23103854|ref|ZP_00090328.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHS%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96472.1;transl_table=11
AM406670.1	EMBL	gene	4226936	4227793	.	-	.	ID=gene3918;Name=paaG6;gbkey=Gene;gene=paaG6;gene_biotype=protein_coding;locus_tag=azo3857
AM406670.1	EMBL	CDS	4226936	4227793	.	-	0	ID=cds3853;Parent=gene3918;Dbxref=EnsemblGenomes-Gn:azo3857,EnsemblGenomes-Tr:CAL96473,GOA:A1KCB7,InterPro:IPR001753,InterPro:IPR029045,UniProtKB/TrEMBL:A1KCB7,NCBI_GP:CAL96473.1;Name=CAL96473.1;Note=Function:- Could possibly oxidizes fatty acids using specific components (By similarity). Activity:-(3S)-3-hydroxyacyl-CoA %3D trans-2(or 3)-enoyl-CoA + H(2)O. Entry name:- SWISSPROT:PAAG_ECOLI InterPro:- IPR001753%3B EnCoA_hydrtse. Pfam:- PF00378%3B ECH%3B 1. Identities %3D 65/222 (29%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;gene=paaG6;product=putative enoyl-CoA hydratase paaG;protein_id=CAL96473.1;transl_table=11
AM406670.1	EMBL	gene	4227790	4231209	.	-	.	ID=gene3919;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=azo3858
AM406670.1	EMBL	CDS	4227790	4231209	.	-	0	ID=cds3854;Parent=gene3919;Dbxref=EnsemblGenomes-Gn:azo3858,EnsemblGenomes-Tr:CAL96474,GOA:A1KCB8,InterPro:IPR006697,InterPro:IPR011335,InterPro:IPR013986,InterPro:IPR027417,UniProtKB/TrEMBL:A1KCB8,NCBI_GP:CAL96474.1;Name=CAL96474.1;Note=Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) (Exodeoxyribonuclease V 125 kDa polypeptide). EXHIBITS A WIDE VARIETY OF CATALYTIC ACTIVITIES INCLUDING ATP-DEPENDENT EXONUCLEASE ATP-STIMULATED ENDONUCLEASE ATP-DEPENDENT HELICASE AND DNA-DEPENDENT ATPASE ACTIVITIES.%3B~High confidence in function and specificity;gbkey=CDS;gene=recC;product=DNA helicase%2C ATP-dependent dsDNA/ssDNA exonuclease V subunit%2C ssDNA endonuclease;protein_id=CAL96474.1;transl_table=11
AM406670.1	EMBL	gene	4231262	4232182	.	-	.	ID=gene3920;Name=yeaT;gbkey=Gene;gene=yeaT;gene_biotype=protein_coding;locus_tag=azo3859
AM406670.1	EMBL	CDS	4231262	4232182	.	-	0	ID=cds3855;Parent=gene3920;Dbxref=EnsemblGenomes-Gn:azo3859,EnsemblGenomes-Tr:CAL96475,GOA:A1KCB9,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:A1KCB9,NCBI_GP:CAL96475.1;Name=CAL96475.1;Note=Putative transcriptional regulator%2C LysR family%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=yeaT;product=putative transcriptional regulator%2C LysR family;protein_id=CAL96475.1;transl_table=11
AM406670.1	EMBL	gene	4232582	4233661	.	+	.	ID=gene3921;Name=yeaU;gbkey=Gene;gene=yeaU;gene_biotype=protein_coding;locus_tag=azo3860
AM406670.1	EMBL	CDS	4232582	4233661	.	+	0	ID=cds3856;Parent=gene3921;Dbxref=EnsemblGenomes-Gn:azo3860,EnsemblGenomes-Tr:CAL96476,GOA:A1KCC0,InterPro:IPR001804,InterPro:IPR011829,InterPro:IPR019818,InterPro:IPR024084,UniProtKB/TrEMBL:A1KCC0,NCBI_GP:CAL96476.1;Name=CAL96476.1;Note=Tartrate dehydrogenase catalyzes the reduction of tartrate to oxaloglycolate. Similar to sprot|TTUC_ECOLI (75%25) and to sprot|TTUC_PSEPU (76%25). Pfam (PF00180): Isocitrate and isopropylmalate dehydrogenases%3B~High confidence in function and specificity;gbkey=CDS;gene=yeaU;product=tartrate dehydrogenase;protein_id=CAL96476.1;transl_table=11
AM406670.1	EMBL	gene	4233743	4233961	.	-	.	ID=gene3922;Name=azo3861;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3861
AM406670.1	EMBL	CDS	4233743	4233961	.	-	0	ID=cds3857;Parent=gene3922;Dbxref=EnsemblGenomes-Gn:azo3861,EnsemblGenomes-Tr:CAL96477,InterPro:IPR024530,UniProtKB/TrEMBL:A1KCC1,NCBI_GP:CAL96477.1;Name=CAL96477.1;Note=Hypothetical protein%2C 73%25 identity(87%25 similarity) to TrEMBL%3BQ8XU60. No domains%2C repeats%2C motifs or features not present.%3B~Function unclear;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96477.1;transl_table=11
AM406670.1	EMBL	gene	4234040	4234657	.	-	.	ID=gene3923;Name=azo3862;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3862
AM406670.1	EMBL	CDS	4234040	4234657	.	-	0	ID=cds3858;Parent=gene3923;Dbxref=EnsemblGenomes-Gn:azo3862,EnsemblGenomes-Tr:CAL96478,GOA:A1KCC2,InterPro:IPR002771,UniProtKB/TrEMBL:A1KCC2,NCBI_GP:CAL96478.1;Name=CAL96478.1;Note=Conserved hypothetical membrane protein. Homology to rsc2949 of R. solanacearum of 54%25 (trembl|Q8XV82(SRS)). Tigrfam: TIGR00427: conserved hypothetical protein. Pfam: Uncharacterised protein family. signal peptide. 5 TMHs;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96478.1;transl_table=11
AM406670.1	EMBL	gene	4234851	4236512	.	+	.	ID=gene3924;Name=azo3863;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3863
AM406670.1	EMBL	CDS	4234851	4236512	.	+	0	ID=cds3859;Parent=gene3924;Dbxref=EnsemblGenomes-Gn:azo3863,EnsemblGenomes-Tr:CAL96479,InterPro:IPR027417,InterPro:IPR027785,UniProtKB/TrEMBL:A1KCC3,NCBI_GP:CAL96479.1;Name=CAL96479.1;Note=Conserved hypothetical protein. Homology to ebA2737 of Azoarcus sp. EbN1 of 63%25 (gnl|keqq|eba:ebA2737(KEGG)). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96479.1;transl_table=11
AM406670.1	EMBL	gene	4236519	4236902	.	-	.	ID=gene3925;Name=azo3864;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3864
AM406670.1	EMBL	CDS	4236519	4236902	.	-	0	ID=cds3860;Parent=gene3925;Dbxref=EnsemblGenomes-Gn:azo3864,EnsemblGenomes-Tr:CAL96480,GOA:A1KCC4,InterPro:IPR009056,UniProtKB/TrEMBL:A1KCC4,NCBI_GP:CAL96480.1;Name=CAL96480.1;Note=Conserved hypothetical cytochrome c family protein. Homology to gsu2513 of G. sulfurreducens of 36%25 (tremblnew|AAR35886). Pfam: Cytochrome c. singal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical cytochrome c family protein;protein_id=CAL96480.1;transl_table=11
AM406670.1	EMBL	gene	4236962	4238632	.	-	.	ID=gene3926;Name=exaA5;gbkey=Gene;gene=exaA5;gene_biotype=protein_coding;locus_tag=azo3865
AM406670.1	EMBL	CDS	4236962	4238632	.	-	0	ID=cds3861;Parent=gene3926;Dbxref=EnsemblGenomes-Gn:azo3865,EnsemblGenomes-Tr:CAL96481,GOA:A1KCC5,InterPro:IPR002372,InterPro:IPR011047,InterPro:IPR018391,InterPro:IPR027295,UniProtKB/TrEMBL:A1KCC5,NCBI_GP:CAL96481.1;Name=CAL96481.1;Note=Quinoprotein ethanol dehydrogenase precursor (QEDH). Oxidizes primary alcohols and also acts on secondary alcohol%2C but not highly active on methanol. 32%25 Bac_PQQ.IPR002372%3B Bac_PQQ_repeat. Pfam:PF01011%3B PQQ%3B 2. Signal peptide:present. SWISSPROT:DHET_GLUOX:O05542.30%25%3B~High confidence in function and specificity;gbkey=CDS;gene=exaA5;product=putative quinoprotein ethanol dehydrogenase;protein_id=CAL96481.1;transl_table=11
AM406670.1	EMBL	gene	4238668	4239555	.	-	.	ID=gene3927;Name=azo3866;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3866
AM406670.1	EMBL	CDS	4238668	4239555	.	-	0	ID=cds3862;Parent=gene3927;Dbxref=EnsemblGenomes-Gn:azo3866,EnsemblGenomes-Tr:CAL96482,InterPro:IPR025737,UniProtKB/TrEMBL:A1KCC6,NCBI_GP:CAL96482.1;Name=CAL96482.1;Note=Conserved hypothetical secreted protein. Homology to GOX0515 of Gluconobacter oxydans of 36%25 (gnl|keqq|gox:GOX0515(KEGG)). no domains predicted. signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96482.1;transl_table=11
AM406670.1	EMBL	gene	4239989	4240999	.	+	.	ID=gene3928;Name=acoA2;gbkey=Gene;gene=acoA2;gene_biotype=protein_coding;locus_tag=azo3867
AM406670.1	EMBL	CDS	4239989	4240999	.	+	0	ID=cds3863;Parent=gene3928;Dbxref=EnsemblGenomes-Gn:azo3867,EnsemblGenomes-Tr:CAL96483,GOA:A1KCC7,InterPro:IPR001017,InterPro:IPR029061,UniProtKB/TrEMBL:A1KCC7,NCBI_GP:CAL96483.1;Name=CAL96483.1;Note=Probable acetoin dehydrogenase%2C alpha subunit. Homology to acoA of C. magnum of 42%25 (trembl|Q46142) CATALYZES THE 26-DICHLOROPHENOLINDOPHENOL-DEPENDENT CLEAVAGE OF ACETOIN INTO ACETATE AND ACETALDEHYDE IN VITRO. THE ALPHA SUBUNIT IS PROBABLY THE CATALYTIC SUBUNIT OF THE ENZYME. Pfam: Dehydrogenase E1 component no signal peptide no TMHs%3B~Family membership;gbkey=CDS;gene=acoA2;product=probable acetoin dehydrogenase%2C alpha subunit;protein_id=CAL96483.1;transl_table=11
AM406670.1	EMBL	gene	4241016	4242053	.	+	.	ID=gene3929;Name=acoB2;gbkey=Gene;gene=acoB2;gene_biotype=protein_coding;locus_tag=azo3868
AM406670.1	EMBL	CDS	4241016	4242053	.	+	0	ID=cds3864;Parent=gene3929;Dbxref=EnsemblGenomes-Gn:azo3868,EnsemblGenomes-Tr:CAL96484,GOA:A1KCC8,InterPro:IPR005475,InterPro:IPR005476,InterPro:IPR009014,InterPro:IPR029061,UniProtKB/TrEMBL:A1KCC8,NCBI_GP:CAL96484.1;Name=CAL96484.1;Note=Probable acetoin dehydrogenase%2C beta subunit. Homology to acoB of. A. eutrophus of 48%25 (sprot|ACOB_ALCEU) Probable TPP-dependent acetoin dehydrogenase%2C beta subunit. Homology to acoB of A. eutrophus of 41%25 (sprot|ACOB_ALCEU) Catalyzes the 2%2C6-dichlorophenolindophenol-dependent cleavage of acetoin into acetate and acetaldehyde%2C in vitro. The beta subunit is probably not the catalytic subunit of the enzyme. InterPro: Transketolase (IPR005474) Pfam: Transketoase%2Cpyridine binding domain %3B Transketolase%2C C-terminal domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=acoB2;product=probable acetoin dehydrogenase%2C beta subunit;protein_id=CAL96484.1;transl_table=11
AM406670.1	EMBL	gene	4242264	4242509	.	+	.	ID=gene3930;Name=azo3869;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3869
AM406670.1	EMBL	CDS	4242264	4242509	.	+	0	ID=cds3865;Parent=gene3930;Dbxref=EnsemblGenomes-Gn:azo3869,EnsemblGenomes-Tr:CAL96485,InterPro:IPR000089,InterPro:IPR003016,InterPro:IPR011053,UniProtKB/TrEMBL:A1KCC9,NCBI_GP:CAL96485.1;Name=CAL96485.1;Note=Conserved hypothetical protein. Homology to oadh21d of H. volcanii of 33%25 (trembl|Q8U4T3). Pfam: Biotin-requiring enzyme. Interpro: Biotin/Lipoyl attachment (IPR000089). no signal peptide. no TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96485.1;transl_table=11
AM406670.1	EMBL	gene	4242513	4243226	.	+	.	ID=gene3931;Name=azo3870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3870
AM406670.1	EMBL	CDS	4242513	4243226	.	+	0	ID=cds3866;Parent=gene3931;Dbxref=EnsemblGenomes-Gn:azo3870,EnsemblGenomes-Tr:CAL96486,GOA:A1KCD0,InterPro:IPR001078,InterPro:IPR023213,UniProtKB/TrEMBL:A1KCD0,NCBI_GP:CAL96486.1;Name=CAL96486.1;Note=Hypothetical protein. Homology of the entire orf to the C-terminus of dihydrolipoamide acetyltransferase. Pfam: 2-0xo acid dehydrogenase acyltransferase no TMHs no signal peptide;gbkey=CDS;product=hypothetical protein;protein_id=CAL96486.1;transl_table=11
AM406670.1	EMBL	gene	4243226	4243996	.	+	.	ID=gene3932;Name=azo3871;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3871
AM406670.1	EMBL	CDS	4243226	4243996	.	+	0	ID=cds3867;Parent=gene3932;Dbxref=EnsemblGenomes-Gn:azo3871,EnsemblGenomes-Tr:CAL96487,GOA:A1KCD1,UniProtKB/TrEMBL:A1KCD1,NCBI_GP:CAL96487.1;Name=CAL96487.1;Note=Putative lipoate protein ligase%2C has weak homology with hits. 35%25 identity with TrEMBL%3BQ81M24%2CQ818P0. Has Signal peptide. Has PF03099%2C Biotin/lipoate A/B protein ligase family%3BIPR004143 BPL_LipA_LipB%3B This family includes biotin protein ligase%2C lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes.;gbkey=CDS;product=putative lipoate protein ligase;protein_id=CAL96487.1;transl_table=11
AM406670.1	EMBL	gene	4244062	4244643	.	+	.	ID=gene3933;Name=azo3872;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3872
AM406670.1	EMBL	CDS	4244062	4244643	.	+	0	ID=cds3868;Parent=gene3933;Dbxref=EnsemblGenomes-Gn:azo3872,EnsemblGenomes-Tr:CAL96488,InterPro:IPR006311,InterPro:IPR019546,InterPro:IPR027056,UniProtKB/TrEMBL:A1KCD2,NCBI_GP:CAL96488.1;Name=CAL96488.1;Note=Conserved hypothetical secreted protein. Homology blr7490 of B.japonicum of 47%25 (trembl|Q89DE9(SRS)). No domains predicted .No TMHs. Signal peptide: present%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96488.1;transl_table=11
AM406670.1	EMBL	gene	4244733	4246307	.	+	.	ID=gene3934;Name=azo3873;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3873
AM406670.1	EMBL	CDS	4244733	4246307	.	+	0	ID=cds3869;Parent=gene3934;Dbxref=EnsemblGenomes-Gn:azo3873,EnsemblGenomes-Tr:CAL96489,GOA:A1KCD3,InterPro:IPR000172,InterPro:IPR007867,UniProtKB/TrEMBL:A1KCD3,NCBI_GP:CAL96489.1;Name=CAL96489.1;Note=Putative glucase dehydrogenase alpha subunit. Homology to gdhalspha of B. cepacia of 31%25 (trembl|Q8GQE7). Pfam: GMC oxidoreductase no signal peptide no TMHs%3B~Function unclear;gbkey=CDS;product=putative glucase dehydrogenase alpha subunit;protein_id=CAL96489.1;transl_table=11
AM406670.1	EMBL	gene	4246369	4246983	.	+	.	ID=gene3935;Name=azo3874;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3874
AM406670.1	EMBL	CDS	4246369	4246983	.	+	0	ID=cds3870;Parent=gene3935;Dbxref=EnsemblGenomes-Gn:azo3874,EnsemblGenomes-Tr:CAL96490,InterPro:IPR029068,UniProtKB/TrEMBL:A1KCD4,NCBI_GP:CAL96490.1;Name=CAL96490.1;Note=Conserved hypothetical secreted protein.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96490.1;transl_table=11
AM406670.1	EMBL	gene	4247215	4249182	.	+	.	ID=gene3936;Name=azo3875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3875
AM406670.1	EMBL	CDS	4247215	4249182	.	+	0	ID=cds3871;Parent=gene3936;Dbxref=EnsemblGenomes-Gn:azo3875,EnsemblGenomes-Tr:CAL96491,GOA:A1KCD5,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR025944,InterPro:IPR027417,InterPro:IPR029016,UniProtKB/TrEMBL:A1KCD5,NCBI_GP:CAL96491.1;Name=CAL96491.1;Note=Similar to SWISSPROT:P28614 (44%25 identity)%3B TREMBL:Q9HWN4 (40%25 identity)%3B TREMBL:Q92X60 (38%25 identity). Pfam (PF02954): Bacterial regulatory protein%2CFis family. Pfam (PF00158): Sigma-54 interaction domain. HTH reporting nucleic acid binding motif.%3B~Family membership;gbkey=CDS;product=Sigma-54-dependent transcriptional regulator;protein_id=CAL96491.1;transl_table=11
AM406670.1	EMBL	gene	4249321	4251393	.	+	.	ID=gene3937;Name=azo3876;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3876
AM406670.1	EMBL	CDS	4249321	4251393	.	+	0	ID=cds3872;Parent=gene3937;Dbxref=EnsemblGenomes-Gn:azo3876,EnsemblGenomes-Tr:CAL96492,InterPro:IPR006531,InterPro:IPR006533,InterPro:IPR010609,InterPro:IPR017847,UniProtKB/TrEMBL:A1KCD6,NCBI_GP:CAL96492.1;Name=CAL96492.1;Note=Rhs family protein%2CvgrG 38%25 identity(54%25 similarity) to TrEMBL%3BQ747T8. TrEMBL%3BO52672. Signal Peptide Present. Has PF04524%2C Protein of unknown function%2CDUF586%3BIPR006533%2C Rhs_Vgr:This family contains a conserved region in several bacterial proteins of unknown function. These sequences represent the Vgr family of proteins%2Cassociated with some classes of Rhs elements. This model does not include a large octapeptide repeat region%2CVGXXXXXX%2C found in the Vgr of Rhs classes G and E. Has PF06715%2C Gp5 C-terminal repeat (2 copies)%3BIPR010609%2CGp5_C:This repeat composes the C-terminal part of the bacteriophage T4 baseplate protein Gp5. This region of the protein forms a needle like projection from the baseplate that is presumed to puncture the bacterial cell membrane. Structurally three copies of the repeated region trimerise to form a beta solenoid type structure. This family also includes repeats from bacterial Vgr proteins.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96492.1;transl_table=11
AM406670.1	EMBL	gene	4251398	4252432	.	+	.	ID=gene3938;Name=azo3877;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3877
AM406670.1	EMBL	CDS	4251398	4252432	.	+	0	ID=cds3873;Parent=gene3938;Dbxref=EnsemblGenomes-Gn:azo3877,EnsemblGenomes-Tr:CAL96493,InterPro:IPR018683,UniProtKB/TrEMBL:A1KCD7,NCBI_GP:CAL96493.1;Name=CAL96493.1;Note=Conserved hypothetical protein. Homology to GSU3186 of G.sulfurreducens of 36%25 (tremblnew|AAR36577(SRS)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96493.1;transl_table=11
AM406670.1	EMBL	gene	4252437	4253474	.	+	.	ID=gene3939;Name=azo3878;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3878
AM406670.1	EMBL	CDS	4252437	4253474	.	+	0	ID=cds3874;Parent=gene3939;Dbxref=EnsemblGenomes-Gn:azo3878,EnsemblGenomes-Tr:CAL96494,GOA:A1KCD8,InterPro:IPR014030,InterPro:IPR016038,InterPro:IPR016039,UniProtKB/TrEMBL:A1KCD8,NCBI_GP:CAL96494.1;Name=CAL96494.1;Note=Region start changed from 4252363 to 4252411 (-48 bases);gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96494.1;transl_table=11
AM406670.1	EMBL	gene	4253497	4254504	.	+	.	ID=gene3940;Name=azo3879;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3879
AM406670.1	EMBL	CDS	4253497	4254504	.	+	0	ID=cds3875;Parent=gene3940;Dbxref=EnsemblGenomes-Gn:azo3879,EnsemblGenomes-Tr:CAL96495,UniProtKB/TrEMBL:A1KCD9,NCBI_GP:CAL96495.1;Name=CAL96495.1;Note=Hypothetical protein predicted by Glimmer/Critica. no homology of the entier protein to the data bank. no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96495.1;transl_table=11
AM406670.1	EMBL	gene	4254527	4255069	.	+	.	ID=gene3941;Name=azo3880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3880
AM406670.1	EMBL	CDS	4254527	4255069	.	+	0	ID=cds3876;Parent=gene3941;Dbxref=EnsemblGenomes-Gn:azo3880,EnsemblGenomes-Tr:CAL96496,UniProtKB/TrEMBL:A1KCE0,NCBI_GP:CAL96496.1;Name=CAL96496.1;Note=Hypothetical protein. Homology to LA1152 of L.interrogans of 28%25 (trembl:Q8F6Z6). No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=hypothetical protein;protein_id=CAL96496.1;transl_table=11
AM406670.1	EMBL	gene	4255159	4255536	.	+	.	ID=gene3942;Name=azo3881;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3881
AM406670.1	EMBL	CDS	4255159	4255536	.	+	0	ID=cds3877;Parent=gene3942;Dbxref=EnsemblGenomes-Gn:azo3881,EnsemblGenomes-Tr:CAL96497,InterPro:IPR025425,UniProtKB/TrEMBL:A1KCE1,NCBI_GP:CAL96497.1;Name=CAL96497.1;Note=Conserved hypothetical protein. Homology to GSU3182 of G.sulfurreducens of 42%25 (tremblnew|AAR36573(SRS)). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96497.1;transl_table=11
AM406670.1	EMBL	gene	4255546	4255974	.	+	.	ID=gene3943;Name=azo3882;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3882
AM406670.1	EMBL	CDS	4255546	4255974	.	+	0	ID=cds3878;Parent=gene3943;Dbxref=EnsemblGenomes-Gn:azo3882,EnsemblGenomes-Tr:CAL96498,UniProtKB/TrEMBL:A1KCE2,NCBI_GP:CAL96498.1;Name=CAL96498.1;Note=Hypothetical protein%2C 40%25 similarity to TrEMBL: O86588. No domains%2C repeats%2C motifs or features predicted present.%3B~Function unclear;gbkey=CDS;product=hypothetical protein;protein_id=CAL96498.1;transl_table=11
AM406670.1	EMBL	gene	4255979	4257190	.	+	.	ID=gene3944;Name=azo3883;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3883
AM406670.1	EMBL	CDS	4255979	4257190	.	+	0	ID=cds3879;Parent=gene3944;Dbxref=EnsemblGenomes-Gn:azo3883,EnsemblGenomes-Tr:CAL96499,InterPro:IPR016024,UniProtKB/TrEMBL:A1KCE3,NCBI_GP:CAL96499.1;Name=CAL96499.1;Note=Hypothetical protein%2C35%25 identity(53%25 similarity) to TrEMBL%3BQ9I731. Very Poor homology with hits in the database over the entire length of protein! No Signal peptide or TMH reported Present.%3B~Family membership;gbkey=CDS;product=Hypothetical protein;protein_id=CAL96499.1;transl_table=11
AM406670.1	EMBL	gene	4257210	4259045	.	+	.	ID=gene3945;Name=azo3884;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3884
AM406670.1	EMBL	CDS	4257210	4259045	.	+	0	ID=cds3880;Parent=gene3945;Dbxref=EnsemblGenomes-Gn:azo3884,EnsemblGenomes-Tr:CAL96500,InterPro:IPR000253,InterPro:IPR008984,InterPro:IPR017735,UniProtKB/TrEMBL:A1KCE4,NCBI_GP:CAL96500.1;Name=CAL96500.1;Note=Hypothetical regulatory protein%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=hypothetical regulatory protein;protein_id=CAL96500.1;transl_table=11
AM406670.1	EMBL	gene	4259097	4259867	.	+	.	ID=gene3946;Name=azo3885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3885
AM406670.1	EMBL	CDS	4259097	4259867	.	+	0	ID=cds3881;Parent=gene3946;Dbxref=EnsemblGenomes-Gn:azo3885,EnsemblGenomes-Tr:CAL96501,GOA:A1KCE5,InterPro:IPR001932,InterPro:IPR015655,UniProtKB/TrEMBL:A1KCE5,NCBI_GP:CAL96501.1;Name=CAL96501.1;Note=Putative phosphoprotein phosphatase%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative phosphoprotein phosphatase;protein_id=CAL96501.1;transl_table=11
AM406670.1	EMBL	gene	4259941	4260594	.	+	.	ID=gene3947;Name=azo3886;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3886
AM406670.1	EMBL	CDS	4259941	4260594	.	+	0	ID=cds3882;Parent=gene3947;Dbxref=EnsemblGenomes-Gn:azo3886,EnsemblGenomes-Tr:CAL96502,UniProtKB/TrEMBL:A1KCE6,NCBI_GP:CAL96502.1;Name=CAL96502.1;Note=Hypothetical secreted protein. Homology to cv1891 of C. violaceum of 27%25 (TrEMBL:Q7NWT8). no domains predicted. signal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL96502.1;transl_table=11
AM406670.1	EMBL	gene	4260635	4261894	.	+	.	ID=gene3948;Name=azo3887;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3887
AM406670.1	EMBL	CDS	4260635	4261894	.	+	0	ID=cds3883;Parent=gene3948;Dbxref=EnsemblGenomes-Gn:azo3887,EnsemblGenomes-Tr:CAL96503,UniProtKB/TrEMBL:A1KCE7,NCBI_GP:CAL96503.1;Name=CAL96503.1;Note=Hypothetical secreted protein. no Homology of the entiere protein to the data bank. no domains predicted. singal peptide. no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL96503.1;transl_table=11
AM406670.1	EMBL	gene	4261940	4263946	.	-	.	ID=gene3949;Name=azo3888;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3888
AM406670.1	EMBL	CDS	4261940	4263946	.	-	0	ID=cds3884;Parent=gene3949;Dbxref=EnsemblGenomes-Gn:azo3888,EnsemblGenomes-Tr:CAL96504,GOA:A1KCE8,InterPro:IPR000719,InterPro:IPR008266,InterPro:IPR011009,InterPro:IPR017441,InterPro:IPR025493,UniProtKB/TrEMBL:A1KCE8,NCBI_GP:CAL96504.1;Name=CAL96504.1;Note=Serine/threonine-protein kinase pknA (EC 2.7.11.1). Probably required for both normal cellular growth and differentiation. Inactivation of pknA leads to colonies that appear light green and rough in the absence of combined nitrogen. Pfam: Protein kinase domain%3B~Family membership;gbkey=CDS;product=putative serine/threonine kinase;protein_id=CAL96504.1;transl_table=11
AM406670.1	EMBL	gene	4264005	4264706	.	-	.	ID=gene3950;Name=azo3889;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3889
AM406670.1	EMBL	CDS	4264005	4264706	.	-	0	ID=cds3885;Parent=gene3950;Dbxref=EnsemblGenomes-Gn:azo3889,EnsemblGenomes-Tr:CAL96505,InterPro:IPR017748,UniProtKB/TrEMBL:A1KCE9,NCBI_GP:CAL96505.1;Name=CAL96505.1;Note=Conserved hypothetical protein. Homology to PA0076 of P.aeruginosa of 38%25 (trembl:Q9I756). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96505.1;transl_table=11
AM406670.1	EMBL	gene	4264709	4268281	.	-	.	ID=gene3951;Name=imcF;gbkey=Gene;gene=imcF;gene_biotype=protein_coding;locus_tag=azo3890
AM406670.1	EMBL	CDS	4264709	4268281	.	-	0	ID=cds3886;Parent=gene3951;Dbxref=EnsemblGenomes-Gn:azo3890,EnsemblGenomes-Tr:CAL96506,InterPro:IPR009612,InterPro:IPR010623,InterPro:IPR017731,InterPro:IPR025743,InterPro:IPR027417,UniProtKB/TrEMBL:A1KCF0,NCBI_GP:CAL96506.1;Name=CAL96506.1;Note=Conserved hypothetical ImcF-related protein. Homology to BPP0730 of Bordetella parapertussis of 45%25 (gnl|keqq|bpa:BPP0730(KEGG)). Has Signal Peptide. TMHMM2 reporting 2 TMH's present. Coils2 Program reporting presence of Coiled-Coil. Has PF06761%2C ImcF-related%3BIPR009612%3B This family represents a conserved region within several bacterial proteins that resemble ImcF%2C which has been proposed to be involved in Vibrio cholerae cell surface reorganisation%2C resulting in increased adherence to epithelial cells and increased conjugation frequency. Note that many family members are hypothetical proteins. Has PF06744%2C Protein of unknown function (DUF1215)%3BIPR010623%3B This family represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein%2C which has been proposed to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.%3B~Conserved hypothetical protein;gbkey=CDS;gene=imcF;product=conserved hypothetical ImcF-related protein;protein_id=CAL96506.1;transl_table=11
AM406670.1	EMBL	gene	4268313	4269617	.	-	.	ID=gene3952;Name=ompA2;gbkey=Gene;gene=ompA2;gene_biotype=protein_coding;locus_tag=azo3891
AM406670.1	EMBL	CDS	4268313	4269617	.	-	0	ID=cds3887;Parent=gene3952;Dbxref=EnsemblGenomes-Gn:azo3891,EnsemblGenomes-Tr:CAL96507,InterPro:IPR006665,InterPro:IPR017732,InterPro:IPR017733,UniProtKB/TrEMBL:A1KCF1,NCBI_GP:CAL96507.1;Name=CAL96507.1;Note=Putative outer membrane protein%2C OmpA family%2C36%25 identity(51%25similarity) to TrEMBL%3BQ93IS0.TrEMBL%3BQ7AXY6(36%25 identity) TMHMM2 reporting presence of 1 TMH's. Has PF00691%2C OmpA family%3BIPR006665%2C OmpA/MotB:Most of the bacterial outer membrane proteins in this group are porin-like integral membrane proteins (such as ompA) MEDLINE:%2Cbut some are small lipid-anchored proteins.It is also found in MotB and related proteins. They are present in the outer membrane of many Gram-negative organisms.%3B~Conserved hypothetical protein;gbkey=CDS;gene=ompA2;product=putative outer membrane protein;protein_id=CAL96507.1;transl_table=11
AM406670.1	EMBL	gene	4269682	4271016	.	-	.	ID=gene3953;Name=impJ;gbkey=Gene;gene=impJ;gene_biotype=protein_coding;locus_tag=azo3892
AM406670.1	EMBL	CDS	4269682	4271016	.	-	0	ID=cds3888;Parent=gene3953;Dbxref=EnsemblGenomes-Gn:azo3892,EnsemblGenomes-Tr:CAL96508,InterPro:IPR010263,UniProtKB/TrEMBL:A1KCF2,NCBI_GP:CAL96508.1;Name=CAL96508.1;Note=Conserved hypothetical protein%2C40%25 Identity (57%25 similarity)to TrEMBL%3BQ93EC4 Has PF05936%2C Bacterial protein of unknown function (DUF876)%3BIPR010263%3BThis family consists of a series of hypothetical bacterial sequences of unknown function.;gbkey=CDS;gene=impJ;product=conserved hypothetical protein;protein_id=CAL96508.1;transl_table=11
AM406670.1	EMBL	gene	4271065	4271583	.	-	.	ID=gene3954;Name=azo3893;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3893
AM406670.1	EMBL	CDS	4271065	4271583	.	-	0	ID=cds3889;Parent=gene3954;Dbxref=EnsemblGenomes-Gn:azo3893,EnsemblGenomes-Tr:CAL96509,InterPro:IPR017734,UniProtKB/TrEMBL:A1KCF3,NCBI_GP:CAL96509.1;Name=CAL96509.1;Note=Conserved hypothetical secreted protein. Homology to PA1666 of P.aeruginosa of 37%25 (trembl|Q9I359(SRS)). Signal peptide present. No TMH or any other domains/features reported present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96509.1;transl_table=11
AM406670.1	EMBL	gene	4271852	4272913	.	+	.	ID=gene3955;Name=sciA;gbkey=Gene;gene=sciA;gene_biotype=protein_coding;locus_tag=azo3894
AM406670.1	EMBL	CDS	4271852	4272913	.	+	0	ID=cds3890;Parent=gene3955;Dbxref=EnsemblGenomes-Gn:azo3894,EnsemblGenomes-Tr:CAL96510,InterPro:IPR010657,InterPro:IPR017740,UniProtKB/TrEMBL:A1KCF4,NCBI_GP:CAL96510.1;Name=CAL96510.1;Note=Putative cytoplasmic protein%2CsciA. TrEMBL%3BQ83SK5 %2CQ7AXZ5 Has PF06812%2C ImpA-related N-terminal%3BIPR010657%2CImpA_N%3BThis family represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein%2C which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans. Note that many family members are hypothetical proteins.%3B~Conserved hypothetical protein;gbkey=CDS;gene=sciA;product=putative cytoplasmic protein;protein_id=CAL96510.1;transl_table=11
AM406670.1	EMBL	gene	4272962	4273471	.	+	.	ID=gene3956;Name=sciH;gbkey=Gene;gene=sciH;gene_biotype=protein_coding;locus_tag=azo3895
AM406670.1	EMBL	CDS	4272962	4273471	.	+	0	ID=cds3891;Parent=gene3956;Dbxref=EnsemblGenomes-Gn:azo3895,EnsemblGenomes-Tr:CAL96511,InterPro:IPR008312,UniProtKB/TrEMBL:A1KCF5,NCBI_GP:CAL96511.1;Name=CAL96511.1;Note=Putative cytoplasmic protein%2CsciH%2C 71%25 identity(87%25 similarity) to TrEMBL%3BQ7AXZ1. Has PF05591%2C Protein of unknown function (DUF770)%3BIPR008312%2CUCP028301%3BThis family consists of several proteins of unknown function from various bacterial species. These proteins are encoded in pathogenic and symbiotic bacteria as part of an operon (part of the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion.These proteins are SciH/ImpB.%3B~High confidence in function and specificity;gbkey=CDS;gene=sciH;product=putative cytoplasmic protein%2CSciH;protein_id=CAL96511.1;transl_table=11
AM406670.1	EMBL	gene	4273523	4275019	.	+	.	ID=gene3957;Name=sciI;gbkey=Gene;gene=sciI;gene_biotype=protein_coding;locus_tag=azo3896
AM406670.1	EMBL	CDS	4273523	4275019	.	+	0	ID=cds3892;Parent=gene3957;Dbxref=EnsemblGenomes-Gn:azo3896,EnsemblGenomes-Tr:CAL96512,InterPro:IPR010269,UniProtKB/TrEMBL:A1KCF6,NCBI_GP:CAL96512.1;Name=CAL96512.1;Note=Putative cytoplasmic protein%2C sciI%2C 68%25 identity(80%25 similarity) to TrEMBL%3BQ93IS7. Has PF05943%2CProtein of unknown function (DUF877)%3BIPR010269%3BThis family consists of a number of uncharacterised bacterial proteins. The function of this family is unknown.%3B~High confidence in function and specificity;gbkey=CDS;gene=sciI;product=putative cytoplasmic protein%2C sciI;protein_id=CAL96512.1;transl_table=11
AM406670.1	EMBL	gene	4275148	4275636	.	+	.	ID=gene3958;Name=sciM;gbkey=Gene;gene=sciM;gene_biotype=protein_coding;locus_tag=azo3897
AM406670.1	EMBL	CDS	4275148	4275636	.	+	0	ID=cds3893;Parent=gene3958;Dbxref=EnsemblGenomes-Gn:azo3897,EnsemblGenomes-Tr:CAL96513,InterPro:IPR008514,UniProtKB/TrEMBL:A1KCF7,NCBI_GP:CAL96513.1;Name=CAL96513.1;Note=Putative cytoplasmic protein%2CsciM %2C 33%25 identity(50%25 similarity) to TrEMBL%3BQ7AXY8. Has PF05638%2CProtein of unknown function (DUF796)%3BIPR008514%3BThis family consists of several bacterial proteins of unknown function.%3B~High confidence in function and specificity;gbkey=CDS;gene=sciM;product=putative cytoplasmic protein%2CsciM;protein_id=CAL96513.1;transl_table=11
AM406670.1	EMBL	gene	4275831	4276337	.	+	.	ID=gene3959;Name=sciK;gbkey=Gene;gene=sciK;gene_biotype=protein_coding;locus_tag=azo3898
AM406670.1	EMBL	CDS	4275831	4276337	.	+	0	ID=cds3894;Parent=gene3959;Dbxref=EnsemblGenomes-Gn:azo3898,EnsemblGenomes-Tr:CAL96514,InterPro:IPR008514,UniProtKB/TrEMBL:A1KCF8,NCBI_GP:CAL96514.1;Name=CAL96514.1;Note=Putative cytoplasmic protein%2CsciK%2C 33%25 identity to TrEMBL%3BQ7AXZ0. Has PF05638%2C Protein of unknown function (DUF796)%3BThis family consists of several bacterial proteins of unknown function. Signal Peptide or TMH absent.%3B~Conserved hypothetical protein;gbkey=CDS;gene=sciK;product=putative cytoplasmic protein%2CsciK;protein_id=CAL96514.1;transl_table=11
AM406670.1	EMBL	gene	4276353	4277174	.	+	.	ID=gene3960;Name=sciE;gbkey=Gene;gene=sciE;gene_biotype=protein_coding;locus_tag=azo3899
AM406670.1	EMBL	CDS	4276353	4277174	.	+	0	ID=cds3895;Parent=gene3960;Dbxref=EnsemblGenomes-Gn:azo3899,EnsemblGenomes-Tr:CAL96515,InterPro:IPR009211,InterPro:IPR011990,InterPro:IPR013026,UniProtKB/TrEMBL:A1KCF9,NCBI_GP:CAL96515.1;Name=CAL96515.1;Note=Putative cytoplasmic protein%2CsciE%2C 37%25 identity(52%25 similarity) to TrEMBL%3BQ93IT1. Has PF07024%2C ImpE protein%3BThis family consists of several bacterial proteins including ImpE (Q93EC9) from Rhizobium leguminosarum. It has been suggested that the imp locus is involved in the secretion to the environment of proteins%2C including periplasmic RbsB protein%2C that cause blocking of infection specifically in pea plants.The exact function of this family is unknown.%3B~High confidence in function and specificity;gbkey=CDS;gene=sciE;product=putative cytoplasmic protein%2CsciE;protein_id=CAL96515.1;transl_table=11
AM406670.1	EMBL	gene	4277167	4277676	.	+	.	ID=gene3961;Name=sciD;gbkey=Gene;gene=sciD;gene_biotype=protein_coding;locus_tag=azo3900
AM406670.1	EMBL	CDS	4277167	4277676	.	+	0	ID=cds3896;Parent=gene3961;Dbxref=EnsemblGenomes-Gn:azo3900,EnsemblGenomes-Tr:CAL96516,InterPro:IPR007048,InterPro:IPR017737,UniProtKB/TrEMBL:A1KCG0,NCBI_GP:CAL96516.1;Name=CAL96516.1;Note=Putative cytoplasmic protein%2C sciD%2C34%25 identity (50%25 similarity) to TrEMBL%3B Q7AXZ4. Has PF07025%2C Protein of unknown function (DUF1316)%3BIPR010745%3BThis family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.%3B~Conserved hypothetical protein;gbkey=CDS;gene=sciD;product=putative cytoplasmic protein%2C sciD;protein_id=CAL96516.1;transl_table=11
AM406670.1	EMBL	gene	4277775	4279646	.	+	.	ID=gene3962;Name=sciC;gbkey=Gene;gene=sciC;gene_biotype=protein_coding;locus_tag=azo3901
AM406670.1	EMBL	CDS	4277775	4279646	.	+	0	ID=cds3897;Parent=gene3962;Dbxref=EnsemblGenomes-Gn:azo3901,EnsemblGenomes-Tr:CAL96517,InterPro:IPR010272,UniProtKB/TrEMBL:A1KCG1,NCBI_GP:CAL96517.1;Name=CAL96517.1;Note=Putative cytoplasmic protein%2C sciC%2C 42%25 identity (57%25 similarity) to TrEMBL%3B Q93IT3. Has PF05947%2C Bacterial protein of unknown function (DUF879)%3BIPR010272 %3B This family consists of several hypothetical bacterial proteins of unknown function.%3B~Function unclear;gbkey=CDS;gene=sciC;product=putative cytoplasmic protein%2C sciC;protein_id=CAL96517.1;transl_table=11
AM406670.1	EMBL	gene	4279622	4280665	.	+	.	ID=gene3963;Name=sciB;gbkey=Gene;gene=sciB;gene_biotype=protein_coding;locus_tag=azo3902
AM406670.1	EMBL	CDS	4279622	4280665	.	+	0	ID=cds3898;Parent=gene3963;Dbxref=EnsemblGenomes-Gn:azo3902,EnsemblGenomes-Tr:CAL96518,InterPro:IPR010732,UniProtKB/TrEMBL:A1KCG2,NCBI_GP:CAL96518.1;Name=CAL96518.1;Note=Putative cytoplasmic protein%2C sciB. TrEMBl%3BQ93IT4(36%25 identity) Has PF06996%3BProtein of unknown function (DUF1305)%3BIPR010732 %3BThis family consists of several hypothetical bacterial proteins of around 300 residues in length. The function of this family is unknown although one member (Q93IT4) from Salmonella enterica is thought to be involved in virulence.%3B~Conserved hypothetical protein;gbkey=CDS;gene=sciB;product=putative cytoplasmic protein%2C sciB.;protein_id=CAL96518.1;transl_table=11
AM406670.1	EMBL	gene	4280714	4283434	.	+	.	ID=gene3964;Name=clpB2;gbkey=Gene;gene=clpB2;gene_biotype=protein_coding;locus_tag=azo3903
AM406670.1	EMBL	CDS	4280714	4283434	.	+	0	ID=cds3899;Parent=gene3964;Dbxref=EnsemblGenomes-Gn:azo3903,EnsemblGenomes-Tr:CAL96519,GOA:A1KCG3,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR017729,InterPro:IPR018368,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,UniProtKB/TrEMBL:A1KCG3,NCBI_GP:CAL96519.1;Name=CAL96519.1;Note=Putative ATP-dependent Clp protease%2C ATP-binding subunit ClpB. Homology to clpB of E. coli of 38%25 (sprot|CLPB_ECOLI). The protein is thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates. Pfam: ATPsae family associated with various cellular activites no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=clpB2;product=putative ATP-dependent Clp protease%2C ATP-binding subunit ClpB;protein_id=CAL96519.1;transl_table=11
AM406670.1	EMBL	gene	4283535	4283924	.	+	.	ID=gene3965;Name=azo3904;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3904
AM406670.1	EMBL	CDS	4283535	4283924	.	+	0	ID=cds3900;Parent=gene3965;Dbxref=EnsemblGenomes-Gn:azo3904,EnsemblGenomes-Tr:CAL96520,InterPro:IPR008969,InterPro:IPR014766,UniProtKB/TrEMBL:A1KCG4,NCBI_GP:CAL96520.1;Name=CAL96520.1;Note=Hypothetical protein predicted by Glimmer/Critica no homology of the entire protein to the data bank no domains predicted no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96520.1;transl_table=11
AM406670.1	EMBL	gene	4283936	4285093	.	+	.	ID=gene3966;Name=azo3905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3905
AM406670.1	EMBL	CDS	4283936	4285093	.	+	0	ID=cds3901;Parent=gene3966;Dbxref=EnsemblGenomes-Gn:azo3905,EnsemblGenomes-Tr:CAL96521,GOA:A1KCG5,InterPro:IPR002921,InterPro:IPR029058,UniProtKB/TrEMBL:A1KCG5,NCBI_GP:CAL96521.1;Name=CAL96521.1;Note=Entry name:- TREMBL:Q7MFV5 Identities %3D 112/345 (32%25)%2C InterPro:- IPR002921%3B Lipase_3. Pfam:- PF01764%3B Lipase_3%3B 1. Prediction: Non-secretory protein Signal peptide probability: 0.074 Number of predicted TMHs: 0%3B~Family membership;gbkey=CDS;product=putative lipase family protein;protein_id=CAL96521.1;transl_table=11
AM406670.1	EMBL	gene	4285131	4286267	.	+	.	ID=gene3967;Name=azo3906;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3906
AM406670.1	EMBL	CDS	4285131	4286267	.	+	0	ID=cds3902;Parent=gene3967;Dbxref=EnsemblGenomes-Gn:azo3906,EnsemblGenomes-Tr:CAL96522,GOA:A1KCG6,InterPro:IPR000909,InterPro:IPR017946,UniProtKB/TrEMBL:A1KCG6,NCBI_GP:CAL96522.1;Name=CAL96522.1;Note=Hypothetical protein. No homology over the entire length with the data base. Pfam: Phosphatidylinositol-specific phospholipase C%2C X domain. Interpro: Phosphatidylinositol-specific phospholipase C%2C X region (IPR000909). No TMHs. No signal peptide.;gbkey=CDS;product=hypothetical protein;protein_id=CAL96522.1;transl_table=11
AM406670.1	EMBL	gene	4286286	4287635	.	+	.	ID=gene3968;Name=azo3907;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3907
AM406670.1	EMBL	CDS	4286286	4287635	.	+	0	ID=cds3903;Parent=gene3968;Dbxref=EnsemblGenomes-Gn:azo3907,EnsemblGenomes-Tr:CAL96523,GOA:A1KCG7,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR013216,InterPro:IPR019734,InterPro:IPR029063,UniProtKB/TrEMBL:A1KCG7,NCBI_GP:CAL96523.1;Name=CAL96523.1;Note=Conserved hypothetical protein. Homology to xac4125 of X. axonopodis of 42%25 (trembl|Q8PF60). Domain structure: 5 x TRP%2C 50 aa - 83 aa%3B 84 aa - 117 aa%3B 118 aa - 151 aa%3B 152 aa - 182 aa%3B 186 aa - 219 aa. InterPro: TPR repeat (IPR001440)%3B SAM (and some other nucleotide) binding motif (IPR000051). Pfam: TPR daomian. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96523.1;transl_table=11
AM406670.1	EMBL	gene	4287636	4289066	.	-	.	ID=gene3969;Name=azo3908;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3908
AM406670.1	EMBL	CDS	4287636	4289066	.	-	0	ID=cds3904;Parent=gene3969;Dbxref=EnsemblGenomes-Gn:azo3908,EnsemblGenomes-Tr:CAL96524,GOA:A1KCG8,InterPro:IPR000719,InterPro:IPR008271,InterPro:IPR011009,InterPro:IPR017441,UniProtKB/TrEMBL:A1KCG8,NCBI_GP:CAL96524.1;Name=CAL96524.1;Note=PutativeSerine/threonine-protein kinase (EC 2.7.11.1) (NimA-related protein kinase 4) (Serine/threonine protein kinase 2). Seems to act exclusively upon threonine residues. Pfam: Protein kinase domain%3B~Family membership;gbkey=CDS;product=putative serine/threonine protein kinase;protein_id=CAL96524.1;transl_table=11
AM406670.1	EMBL	gene	4289077	4289949	.	-	.	ID=gene3970;Name=mnsA;gbkey=Gene;gene=mnsA;gene_biotype=protein_coding;locus_tag=azo3909
AM406670.1	EMBL	CDS	4289077	4289949	.	-	0	ID=cds3905;Parent=gene3970;Dbxref=EnsemblGenomes-Gn:azo3909,EnsemblGenomes-Tr:CAL96525,GOA:A1KCG9,InterPro:IPR003660,InterPro:IPR021796,UniProtKB/TrEMBL:A1KCG9,NCBI_GP:CAL96525.1;Name=CAL96525.1;Note=Probable sensor protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=mnsA;product=probable sensor protein;protein_id=CAL96525.1;transl_table=11
AM406670.1	EMBL	gene	4290002	4290928	.	-	.	ID=gene3971;Name=azo3910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3910
AM406670.1	EMBL	CDS	4290002	4290928	.	-	0	ID=cds3906;Parent=gene3971;Dbxref=EnsemblGenomes-Gn:azo3910,EnsemblGenomes-Tr:CAL96526,InterPro:IPR006860,UniProtKB/TrEMBL:A1KCH0,NCBI_GP:CAL96526.1;Name=CAL96526.1;Note=Hypothetical secreted protein no homology of the entire protein to the data bank no domains predicted signal peptide no TMHs;gbkey=CDS;product=hypothetical secreted protein;protein_id=CAL96526.1;transl_table=11
AM406670.1	EMBL	gene	4291053	4292258	.	+	.	ID=gene3972;Name=fabF2;gbkey=Gene;gene=fabF2;gene_biotype=protein_coding;locus_tag=azo3911
AM406670.1	EMBL	CDS	4291053	4292258	.	+	0	ID=cds3907;Parent=gene3972;Dbxref=EnsemblGenomes-Gn:azo3911,EnsemblGenomes-Tr:CAL96527,GOA:A1KCH1,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR018201,UniProtKB/TrEMBL:A1KCH1,NCBI_GP:CAL96527.1;Name=CAL96527.1;Note=CATALYZES THE CONDENSATION REACTION OF FATTY ACID SYNTHESIS BY THE ADDITION TO AN ACYL ACCEPTOR OF TWO CARBONS FROM MALONYL-ACP. HAS A PREFERENCE FOR SHORT CHAIN ACID SUBSTRATES AND MAY FUNCTION TO SUPPLY THE OCTANOIC SUBSTRATES FOR LIPOIC ACID BIOSYNTHESIS (BY SIMILARITY)%2CTREMBL:Q8P3S1 (45%25 identity)%3B TREMBL:Q87CD9 (41%25 identity). InterPro (IPR000794): Beta-ketoacyl synthase. Pfam (PF02801): Beta-ketoacyl synthase%2C C-terminal domain. Pfam (PF00109): Beta-ketoacyl synthase%2C N-terminal domain. Signal P reporting signal peptide.%3B~High confidence in function and specificity;gbkey=CDS;gene=fabF2;product=3-oxoacyl-[acyl-carrier-protein] synthase;protein_id=CAL96527.1;transl_table=11
AM406670.1	EMBL	gene	4292263	4293090	.	+	.	ID=gene3973;Name=azo3912;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3912
AM406670.1	EMBL	CDS	4292263	4293090	.	+	0	ID=cds3908;Parent=gene3973;Dbxref=EnsemblGenomes-Gn:azo3912,EnsemblGenomes-Tr:CAL96528,GOA:A1KCH2,InterPro:IPR016039,UniProtKB/TrEMBL:A1KCH2,NCBI_GP:CAL96528.1;Name=CAL96528.1;Note=Conserved hypothetical protein. Homology to RSc0426 of R.solanacearum of 51%25 (trembl:Q8Y2B0). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96528.1;transl_table=11
AM406670.1	EMBL	gene	4293087	4293596	.	+	.	ID=gene3974;Name=azo3913;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3913
AM406670.1	EMBL	CDS	4293087	4293596	.	+	0	ID=cds3909;Parent=gene3974;Dbxref=EnsemblGenomes-Gn:azo3913,EnsemblGenomes-Tr:CAL96529,InterPro:IPR029069,UniProtKB/TrEMBL:A1KCH3,NCBI_GP:CAL96529.1;Name=CAL96529.1;Note=Entry name:- TREMBL:Q8Y2B1 Prim. accession # Q8Y2B1 Identities %3D 64/116 (55%25) Prediction: Non-secretory protein Signal peptide probability: 0.000 Number of predicted TMHs: 0;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96529.1;transl_table=11
AM406670.1	EMBL	gene	4293607	4294332	.	+	.	ID=gene3975;Name=fabG2;gbkey=Gene;gene=fabG2;gene_biotype=protein_coding;locus_tag=azo3914
AM406670.1	EMBL	CDS	4293607	4294332	.	+	0	ID=cds3910;Parent=gene3975;Dbxref=EnsemblGenomes-Gn:azo3914,EnsemblGenomes-Tr:CAL96530,GOA:A1KCH4,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:A1KCH4,NCBI_GP:CAL96530.1;Name=CAL96530.1;Note=The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes%2C most of which are known to be NAD- or NADP-dependent oxidoreductases%2CTREMBL:Q8PF93 (52%25 identity)%3B TREMBL:Q8Y2A1 (53%25 identity). Pfam (PF00106): Short chain dehydrogenase.%3B~High confidence in function and specificity;gbkey=CDS;gene=fabG2;product=3-oxoacyl-[acyl-carrier protein] reductase;protein_id=CAL96530.1;transl_table=11
AM406670.1	EMBL	gene	4294332	4295636	.	+	.	ID=gene3976;Name=azo3915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3915
AM406670.1	EMBL	CDS	4294332	4295636	.	+	0	ID=cds3911;Parent=gene3976;Dbxref=EnsemblGenomes-Gn:azo3915,EnsemblGenomes-Tr:CAL96531,GOA:A1KCH5,InterPro:IPR006153,UniProtKB/TrEMBL:A1KCH5,NCBI_GP:CAL96531.1;Name=CAL96531.1;Note=23%25 K_eff.IPR006153%3B Na_H_porter. Pfam:PF00999%3B Na_H_Exchanger%3B 1. TIGRFAMs:TIGR00932%3B 2a37%3B 1. TMHelix: 11.%3B~High confidence in function and specificity;gbkey=CDS;product=putative Na/H(+) antiporter;protein_id=CAL96531.1;transl_table=11
AM406670.1	EMBL	gene	4295751	4296674	.	+	.	ID=gene3977;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;locus_tag=azo3916
AM406670.1	EMBL	CDS	4295751	4296674	.	+	0	ID=cds3912;Parent=gene3977;Dbxref=EnsemblGenomes-Gn:azo3916,EnsemblGenomes-Tr:CAL96532,GOA:A1KCH6,InterPro:IPR000534,InterPro:IPR010136,InterPro:IPR016040,InterPro:IPR023013,UniProtKB/TrEMBL:A1KCH6,NCBI_GP:CAL96532.1;Name=CAL96532.1;Note=N-acetyl-gamma-glutamyl-phosphate reductase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=argC;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=CAL96532.1;transl_table=11
AM406670.1	EMBL	gene	4296699	4297466	.	-	.	ID=gene3978;Name=azo3917;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3917
AM406670.1	EMBL	CDS	4296699	4297466	.	-	0	ID=cds3913;Parent=gene3978;Dbxref=EnsemblGenomes-Gn:azo3917,EnsemblGenomes-Tr:CAL96533,GOA:A1KCH7,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:A1KCH7,NCBI_GP:CAL96533.1;Name=CAL96533.1;Note=Specificity unclear;gbkey=CDS;product=glycosyltransferase;protein_id=CAL96533.1;transl_table=11
AM406670.1	EMBL	gene	4297495	4298283	.	-	.	ID=gene3979;Name=azo3918;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3918
AM406670.1	EMBL	CDS	4297495	4298283	.	-	0	ID=cds3914;Parent=gene3979;Dbxref=EnsemblGenomes-Gn:azo3918,EnsemblGenomes-Tr:CAL96534,GOA:A1KCH8,InterPro:IPR002123,UniProtKB/TrEMBL:A1KCH8,NCBI_GP:CAL96534.1;Name=CAL96534.1;Note=Putative phospholipid biosynthesis acyltransferase%2C30%25 Identity to TrEMBL%3BQ8FJ00.Q8X6N6 Has Signal Peptide. Has SMART%3BSM00563%2C PlsC%2C Phosphate acyltransferases%3BFunction in phospholipid biosynthesis and have either glycerolphosphate%2C 1-acylglycerolphosphate%2C or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin%2C the product of the gene mutated in patients with Barth syndrome%2C is a member of this family.;gbkey=CDS;product=putative phospholipid biosynthesis acyltransferase;protein_id=CAL96534.1;transl_table=11
AM406670.1	EMBL	gene	4298304	4299155	.	-	.	ID=gene3980;Name=mipA;gbkey=Gene;gene=mipA;gene_biotype=protein_coding;locus_tag=azo3919
AM406670.1	EMBL	CDS	4298304	4299155	.	-	0	ID=cds3915;Parent=gene3980;Dbxref=EnsemblGenomes-Gn:azo3919,EnsemblGenomes-Tr:CAL96535,InterPro:IPR010583,UniProtKB/TrEMBL:A1KCH9,NCBI_GP:CAL96535.1;Name=CAL96535.1;Note=MltA-interacting protein precursor. MAY SERVE AS A SCAFFOLD PROTEIN REQUIRED FOR THE FORMATION OF A COMPLEX WITH MRCB/PONB AND MLTA THIS COMPLEX COULD PLAY A ROLE IN ENLARGEMENT AND SEPTATION OF THE MUREIN SACCULUS.%3B~High confidence in function and specificity;gbkey=CDS;gene=mipA;product=MltA-interacting protein precursor;protein_id=CAL96535.1;transl_table=11
AM406670.1	EMBL	gene	4299152	4300162	.	-	.	ID=gene3981;Name=azo3920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3920
AM406670.1	EMBL	CDS	4299152	4300162	.	-	0	ID=cds3916;Parent=gene3981;Dbxref=EnsemblGenomes-Gn:azo3920,EnsemblGenomes-Tr:CAL96536,InterPro:IPR013813,UniProtKB/TrEMBL:A1KCI0,NCBI_GP:CAL96536.1;Name=CAL96536.1;Note=Conserved Hypothetical protein%2C Most Hits in the data base suggest to Pteridine-dependent deoxygenase like protein%2CTrEMBL%3BQ8P3Q5. Has PF01042 Endoribonuclease L-PSP%2C(IPR006175:Endoribon_LPSP)%3BThis domain is found in endoribonuclease%2C that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA. Previously it was thought to inhibit protein synthesis initiation.This endoribonuclease may also be involved in the regulation of purine biosynthesis . No Signal peptide or TMH present!%3B~Family membership;gbkey=CDS;product=Conserved Hypothetical protein;protein_id=CAL96536.1;transl_table=11
AM406670.1	EMBL	gene	4300159	4301538	.	-	.	ID=gene3982;Name=azo3921;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3921
AM406670.1	EMBL	CDS	4300159	4301538	.	-	0	ID=cds3917;Parent=gene3982;Dbxref=EnsemblGenomes-Gn:azo3921,EnsemblGenomes-Tr:CAL96537,GOA:A1KCI1,InterPro:IPR003042,InterPro:IPR006905,UniProtKB/TrEMBL:A1KCI1,NCBI_GP:CAL96537.1;Name=CAL96537.1;Note=Conserved hypothetical protein. Homology to xcc4013 of X. campestris of 46%25 (trembl|Q8P3Q6). InterPro: Monooxygenases FAD binding domain (IPR002938)%3B NAD binding site (IPR000205) Pfam: FAD binding domain%3B Monooxygenase FAD binding domain. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96537.1;transl_table=11
AM406670.1	EMBL	gene	4301535	4302155	.	-	.	ID=gene3983;Name=azo3922;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3922
AM406670.1	EMBL	CDS	4301535	4302155	.	-	0	ID=cds3918;Parent=gene3983;Dbxref=EnsemblGenomes-Gn:azo3922,EnsemblGenomes-Tr:CAL96538,UniProtKB/TrEMBL:A1KCI2,NCBI_GP:CAL96538.1;Name=CAL96538.1;Note=Conserved hypothetical secred protein. Homology to xac4267 of X. axonopodis of 41%25 (trembl|Q8PES3). no domains predicted .signal peptide. no TMHs%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96538.1;transl_table=11
AM406670.1	EMBL	gene	4302273	4302821	.	-	.	ID=gene3984;Name=lrp2;gbkey=Gene;gene=lrp2;gene_biotype=protein_coding;locus_tag=azo3923
AM406670.1	EMBL	CDS	4302273	4302821	.	-	0	ID=cds3919;Parent=gene3984;Dbxref=EnsemblGenomes-Gn:azo3923,EnsemblGenomes-Tr:CAL96539,GOA:A1KCI3,InterPro:IPR000485,InterPro:IPR011008,InterPro:IPR011991,InterPro:IPR019885,InterPro:IPR019887,InterPro:IPR019888,UniProtKB/TrEMBL:A1KCI3,NCBI_GP:CAL96539.1;Name=CAL96539.1;Note=Probable leucine-responsive regulatory protein. Mediates a global response to leucine. Exogenous leucine affects the expression of a number of different opreons%3B Lrp mediates this effect for at least some of these operons. For example it is regulator of the branched-chain amino acid transport genes. Similar to SWISSPROT: sprot|LRP_ECOLI (49%25 Escherichia coli%2C leucine-responsive regulatory protein Lrp) InterPro: IPR000485 HTH_AsnC_lrp. Pfam: PF01037 AsnC family. HTH reporting nucleic acid binding motif.%3B~High confidence in function and specificity;gbkey=CDS;gene=lrp2;product=leucine-responsive regulatory protein;protein_id=CAL96539.1;transl_table=11
AM406670.1	EMBL	gene	4302926	4304239	.	+	.	ID=gene3985;Name=dadA2;gbkey=Gene;gene=dadA2;gene_biotype=protein_coding;locus_tag=azo3924
AM406670.1	EMBL	CDS	4302926	4304239	.	+	0	ID=cds3920;Parent=gene3985;Dbxref=EnsemblGenomes-Gn:azo3924,EnsemblGenomes-Tr:CAL96540,GOA:A1KCI4,InterPro:IPR006076,InterPro:IPR023080,UniProtKB/TrEMBL:A1KCI4,NCBI_GP:CAL96540.1;Name=CAL96540.1;Note=The L-alanine catabolic pathway proceeds in two steps: racemization of the L-isomer to D-alanine by alanine racemase and oxidative deamination of D-alanine to pyruvate and ammonia by D- amino acid dehydrogenase. Similar to sprot|DADA_BORBR (68%25) and to sprot|DAD1_PSEAE (61%25). ProSite (PS50205): NAD binding site ProSite (PF01266): D-amino acid oxidase%3B~Specificity unclear;gbkey=CDS;gene=dadA2;product=D-amino acid dehydrogenase small subunit;protein_id=CAL96540.1;transl_table=11
AM406670.1	EMBL	gene	4304301	4305362	.	+	.	ID=gene3986;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=azo3925
AM406670.1	EMBL	CDS	4304301	4305362	.	+	0	ID=cds3921;Parent=gene3986;Dbxref=EnsemblGenomes-Gn:azo3925,EnsemblGenomes-Tr:CAL96541,GOA:A1KCI5,InterPro:IPR000821,InterPro:IPR001608,InterPro:IPR009006,InterPro:IPR011079,InterPro:IPR020622,InterPro:IPR029066,NCBI_GP:CAL96541.1;Name=CAL96541.1;Note=Alanine racemase catabolic (EC 5.1.1.1). Isomerizes L-alanine to D-alanine which is then oxidized to pyruvate by dadA (By similarity). alr: alanine racemase%3B~High confidence in function and specificity;gbkey=CDS;gene=alr;product=alanine racemase;protein_id=CAL96541.1;transl_table=11
AM406670.1	EMBL	gene	4305381	4305590	.	-	.	ID=gene3987;Name=azo3926;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3926
AM406670.1	EMBL	CDS	4305381	4305590	.	-	0	ID=cds3922;Parent=gene3987;Dbxref=EnsemblGenomes-Gn:azo3926,EnsemblGenomes-Tr:CAL96542,UniProtKB/TrEMBL:A1KCI6,NCBI_GP:CAL96542.1;Name=CAL96542.1;Note=conserved hypothetical protein. Homology to Daro03003529 of Dechloromonas aromatica of 39%25 (gi|41722979|ref|ZP_00149945.1|(NBCI ENTREZ)). no domains predicted. no signal peptide. no TMH;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96542.1;transl_table=11
AM406670.1	EMBL	gene	4305599	4306858	.	-	.	ID=gene3988;Name=cycH;gbkey=Gene;gene=cycH;gene_biotype=protein_coding;locus_tag=azo3927
AM406670.1	EMBL	CDS	4305599	4306858	.	-	0	ID=cds3923;Parent=gene3988;Dbxref=EnsemblGenomes-Gn:azo3927,EnsemblGenomes-Tr:CAL96543,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR017560,InterPro:IPR019734,UniProtKB/TrEMBL:A1KCI7,NCBI_GP:CAL96543.1;Name=CAL96543.1;Note=Conserved hyppthetical cytochrome c-type biogenesis protein CycH. Homology to cycH of Azoarcus sp. EbN1 of 50%25 (gnl|keqq|eba:ebA3526(KEGG)). REQUIRED FOR THE BIOGENESIS OF C-TYPE CYTOCHROMES. POSSIBLE SUBUNIT OF A HEME LYASE (BY SIMILARITY). signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=cycH;product=conserved hypothetical cytochrome c-type biogenesis protein CycH;protein_id=CAL96543.1;transl_table=11
AM406670.1	EMBL	gene	4306855	4307364	.	-	.	ID=gene3989;Name=cycL;gbkey=Gene;gene=cycL;gene_biotype=protein_coding;locus_tag=azo3928
AM406670.1	EMBL	CDS	4306855	4307364	.	-	0	ID=cds3924;Parent=gene3989;Dbxref=EnsemblGenomes-Gn:azo3928,EnsemblGenomes-Tr:CAL96544,InterPro:IPR005616,UniProtKB/TrEMBL:A1KCI8,NCBI_GP:CAL96544.1;Name=CAL96544.1;Note=Probable Cytochrome c-type biogenesis protein cycL. Homology to cycL of S. meliloti of 44%25 (sprot|CCMH_RHIME). REQUIRED FOR THE BIOGENESIS OF C-TYPE CYTOCHROMES. POSSIBLE SUBUNIT OF A HEME LYASE. signal peptide probable 2 TMHs%3B~Family membership;gbkey=CDS;gene=cycL;product=probable cytochrome C-type biogenesis protein CycL;protein_id=CAL96544.1;transl_table=11
AM406670.1	EMBL	gene	4307381	4307974	.	-	.	ID=gene3990;Name=ccmG;gbkey=Gene;gene=ccmG;gene_biotype=protein_coding;locus_tag=azo3929
AM406670.1	EMBL	CDS	4307381	4307974	.	-	0	ID=cds3925;Parent=gene3990;Dbxref=EnsemblGenomes-Gn:azo3929,EnsemblGenomes-Tr:CAL96545,GOA:A1KCI9,InterPro:IPR012336,InterPro:IPR013740,InterPro:IPR017937,UniProtKB/TrEMBL:A1KCI9,NCBI_GP:CAL96545.1;Name=CAL96545.1;Note=Probable thiol disulfide interchange protein. Involved in disulfide bond formation. Catalyzes a late reductive step in the assembly of periplasmic c-type cytochromes probably the reduction of disulfide bonds of the apocytochrome c to allow covalent linkage with the heme. Possible subunit of a heme lyase (By similarity). InterPro: Periplasmic protein thiol:disulfide oxidoreductase DsbE (IPR004799) Interpro: Thioredoxin (IPR006662) Tigrfam: dsbE: periplasmic protein thiol:disulfide axidoreductase%2C DsbE superfamily signal peptide Probable 1 TMH%3B~Family membership;gbkey=CDS;gene=ccmG;product=protein disulfide-isomerase;protein_id=CAL96545.1;transl_table=11
AM406670.1	EMBL	gene	4307994	4309970	.	-	.	ID=gene3991;Name=ccmF;gbkey=Gene;gene=ccmF;gene_biotype=protein_coding;locus_tag=azo3930
AM406670.1	EMBL	CDS	4307994	4309970	.	-	0	ID=cds3926;Parent=gene3991;Dbxref=EnsemblGenomes-Gn:azo3930,EnsemblGenomes-Tr:CAL96546,GOA:A1KCJ0,InterPro:IPR002541,InterPro:IPR003567,InterPro:IPR003568,UniProtKB/TrEMBL:A1KCJ0,NCBI_GP:CAL96546.1;Name=CAL96546.1;Note=Cytochrome c-type biogenesis protein ccmF. Homology to ccmF of E. coli of 63%25 (sprot|CCMF_ECOLI). REQUIRED FOR THE BIOGENESIS OF C-TYPE CYTOCHROMES. POSSIBLE SUBUNIT OF A HEME LYASE. Tigrfam: nerF: cytochrome c-type biogenesis protein ccmF Pfam: Cytochrome C assembly protein probably signal peptide probably 15 THMs%3B~High confidence in function and specificity;gbkey=CDS;gene=ccmF;product=cytochrome c-type biogenesis protein CcmF;protein_id=CAL96546.1;transl_table=11
AM406670.1	EMBL	gene	4309967	4310413	.	-	.	ID=gene3992;Name=ccmE;gbkey=Gene;gene=ccmE;gene_biotype=protein_coding;locus_tag=azo3931
AM406670.1	EMBL	CDS	4309967	4310413	.	-	0	ID=cds3927;Parent=gene3992;Dbxref=EnsemblGenomes-Gn:azo3931,EnsemblGenomes-Tr:CAL96547,GOA:A1KCJ1,InterPro:IPR004329,InterPro:IPR012340,NCBI_GP:CAL96547.1;Name=CAL96547.1;Note=Cytochrome c-type biogenesis protein CcmE. Homology to ccmE of E. coli of 45%25 (sprot|CCME_ECOLI). REQUIRED FOR THE BIOGENESIS OF C-TYPE CYTOCHROMES. POSSIBLE SUBUNIT OF A HEME LYASE (BY SIMILARITY). InterPro: CcmE/CycJ proteins (IPR004329) Pfam: CcmE signal peptide probable 1TMH%3B~High confidence in function and specificity;gbkey=CDS;gene=ccmE;product=probable cytochrome C-type biogenesis protein CcmE;protein_id=CAL96547.1;transl_table=11
AM406670.1	EMBL	gene	4310410	4310631	.	-	.	ID=gene3993;Name=ccmD;gbkey=Gene;gene=ccmD;gene_biotype=protein_coding;locus_tag=azo3932
AM406670.1	EMBL	CDS	4310410	4310631	.	-	0	ID=cds3928;Parent=gene3993;Dbxref=EnsemblGenomes-Gn:azo3932,EnsemblGenomes-Tr:CAL96548,GOA:A1KCJ2,InterPro:IPR007078,UniProtKB/TrEMBL:A1KCJ2,NCBI_GP:CAL96548.1;Name=CAL96548.1;Note=Conserved hypothetical heme exporter protein D. Homology to ccmD of Azoarcus EBN1 of 49%25 (trembl:Q5P3K7). Pfam: Heme exporter protein D . The CcmD protein is part of a C-type cytochrome biogenesis operon. The exact function of this protein is uncertain. It has been proposed that CcmC%2C CcmD and CcmE interact directly with each other%2C establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation. This protein is found fused to CcmE in P52224. These proteins contain a predicted transmembrane helix. No signal peptide. 1 TMHs%3B~Conserved hypothetical protein;gbkey=CDS;gene=ccmD;product=conserved hypothetical heme exporter protein D;protein_id=CAL96548.1;transl_table=11
AM406670.1	EMBL	gene	4310631	4311407	.	-	.	ID=gene3994;Name=ccmC;gbkey=Gene;gene=ccmC;gene_biotype=protein_coding;locus_tag=azo3933
AM406670.1	EMBL	CDS	4310631	4311407	.	-	0	ID=cds3929;Parent=gene3994;Dbxref=EnsemblGenomes-Gn:azo3933,EnsemblGenomes-Tr:CAL96549,GOA:A1KCJ3,InterPro:IPR002541,InterPro:IPR003557,UniProtKB/TrEMBL:A1KCJ3,NCBI_GP:CAL96549.1;Name=CAL96549.1;Note=Probable heme exporter protein C (Cytochrome c-type biogenesis protein ccmC). Homology to ccmC of E. coli of 43%25 (sprot|CCMC_ECOLI). Required for the export of heme to the periplasm for the biogenesis of C-type cytochromes. Pfam: Cytrochrome C assembly protein no signal peptide probable 6 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ccmC;product=probable heme exporter protein C;protein_id=CAL96549.1;transl_table=11
AM406670.1	EMBL	gene	4311404	4311499	.	-	.	ID=gene3995;Name=azo3934;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3934
AM406670.1	EMBL	CDS	4311404	4311499	.	-	0	ID=cds3930;Parent=gene3995;Dbxref=EnsemblGenomes-Gn:azo3934,EnsemblGenomes-Tr:CAL96550,UniProtKB/TrEMBL:A1KCJ4,NCBI_GP:CAL96550.1;Name=CAL96550.1;Note=Hypothetical protein predicted by Glimmer/Critica no homology to the data bank no domains predicted no signal peptide no TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96550.1;transl_table=11
AM406670.1	EMBL	gene	4311496	4312164	.	-	.	ID=gene3996;Name=ccmB;gbkey=Gene;gene=ccmB;gene_biotype=protein_coding;locus_tag=azo3935
AM406670.1	EMBL	CDS	4311496	4312164	.	-	0	ID=cds3931;Parent=gene3996;Dbxref=EnsemblGenomes-Gn:azo3935,EnsemblGenomes-Tr:CAL96551,GOA:A1KCJ5,InterPro:IPR003544,InterPro:IPR026031,UniProtKB/TrEMBL:A1KCJ5,NCBI_GP:CAL96551.1;Name=CAL96551.1;Note=Probable heme exporter protein B (Cytochrome c-type biogenesis protein ccmB). Homology to ccmB (sprot|CCMB_ECOLI) of E. coli of 49%25. Required for the export of heme to the periplasm for the biogenesis of C-type cytochromes (By similarity). no signal peptide probable 6 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ccmB;product=probable heme exporter protein B;protein_id=CAL96551.1;transl_table=11
AM406670.1	EMBL	gene	4312158	4312784	.	-	.	ID=gene3997;Name=ccmA;gbkey=Gene;gene=ccmA;gene_biotype=protein_coding;locus_tag=azo3936
AM406670.1	EMBL	CDS	4312158	4312784	.	-	0	ID=cds3932;Parent=gene3997;Dbxref=EnsemblGenomes-Gn:azo3936,EnsemblGenomes-Tr:CAL96552,GOA:A1KCJ6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005895,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:A1KCJ6,NCBI_GP:CAL96552.1;Name=CAL96552.1;Note=Probable heme exporter protein A (Cytochrome c-type biogenesis ATP-binding protein ccmA). Homology to ccmA (CCMA_ECOLI) of E. coli of 47%25. Required for the export of heme to the periplasm for the biogenesis of C-type cytochromes (By similarity). InterPro: AAA ATPase superfamily (IPR003593)%2C ABC-Transporter (IPR003439)%2CATP/GTP-binding motif A (IPR001687) Pfam: ABC transporter no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=ccmA;product=probable heme exporter protein A;protein_id=CAL96552.1;transl_table=11
AM406670.1	EMBL	gene	4313372	4315009	.	+	.	ID=gene3998;Name=azo3937;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3937
AM406670.1	EMBL	CDS	4313372	4315009	.	+	0	ID=cds3933;Parent=gene3998;Dbxref=EnsemblGenomes-Gn:azo3937,EnsemblGenomes-Tr:CAL96553,GOA:A1KCJ7,InterPro:IPR000014,InterPro:IPR001610,InterPro:IPR004089,UniProtKB/TrEMBL:A1KCJ7,NCBI_GP:CAL96553.1;Name=CAL96553.1;Note=Putative aerotaxis receptor%2C sensory_box TMHMM reporting 2 transmembrane helices. HTH reporting nucleic acid binding motif. Aerotaxis receptor. SIGNAL TRANSDUCER FOR AEROTAXIS. THE AEROTACTIC RESPONSES IS THE ACCUMULATION OF CELLS AROUND AIR BUBBLES. THE NATURE OF THE SENSORY STIMULUS DETECTED BY THIS PROTEIN IS THE PROTON MOTIVE FORCE OR CELLULAR REDOX STATE. IT USES A FAD PROSTHETIC GROUP AS A REDOX SENSOR TO MONITOR OXYGEN LEVELS.%3B~Specificity unclear;gbkey=CDS;product=putative aerotaxis receptor;protein_id=CAL96553.1;transl_table=11
AM406670.1	EMBL	gene	4315202	4315840	.	-	.	ID=gene3999;Name=napC2;gbkey=Gene;gene=napC2;gene_biotype=protein_coding;locus_tag=azo3938
AM406670.1	EMBL	CDS	4315202	4315840	.	-	0	ID=cds3934;Parent=gene3999;Dbxref=EnsemblGenomes-Gn:azo3938,EnsemblGenomes-Tr:CAL96554,GOA:A1KCJ8,InterPro:IPR005126,InterPro:IPR011031,InterPro:IPR024717,UniProtKB/TrEMBL:A1KCJ8,NCBI_GP:CAL96554.1;Name=CAL96554.1;Note=Probable cytochrome c-type protein NapC. Homology to napC of R. sphaeroides of 57%25 (sprot|NAPC_RHOSH). MEDIATES ELECTRON FLOW FROM QUINONES TO THE NAPAB COMPLEX. no signal peptide probable 1 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=napC2;product=probable cytochrome c-type protein NapC;protein_id=CAL96554.1;transl_table=11
AM406670.1	EMBL	gene	4315856	4316308	.	-	.	ID=gene4000;Name=napB2;gbkey=Gene;gene=napB2;gene_biotype=protein_coding;locus_tag=azo3939
AM406670.1	EMBL	CDS	4315856	4316308	.	-	0	ID=cds3935;Parent=gene4000;Dbxref=EnsemblGenomes-Gn:azo3939,EnsemblGenomes-Tr:CAL96555,GOA:A1KCJ9,InterPro:IPR005591,InterPro:IPR011031,InterPro:IPR027406,UniProtKB/TrEMBL:A1KCJ9,NCBI_GP:CAL96555.1;Name=CAL96555.1;Note=Probable diheme cytochrome c. Homology to napB of A. eutrophus of 47%25 (sprot|NAPB_ALCEU). SMALL SUBUNIT OF THE PERIPLASMIC NITRATE REDUCTASE (NAP). ONLY EXPRESSED AT HIGH LEVELS DURING AEROBIC GROWTH. NAPAB COMPLEX RECEIVES ELECTRONS FROM THE MEMBRANE-ANCHORED TETRAHEME NAPC PROTEIN THUS ALLOWING ELECTRON FLOW BETWEEN MEMBRANE AND PERIPLASM. ESSENTIAL FUNCTION FOR NITRATE ASSIMILATION AND MAY HAVE A ROLE IN ANAEROBIC METABOLISM. signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=napB2;product=probable diheme cytochrome c;protein_id=CAL96555.1;transl_table=11
AM406670.1	EMBL	gene	4316305	4317300	.	-	.	ID=gene4001;Name=napH;gbkey=Gene;gene=napH;gene_biotype=protein_coding;locus_tag=azo3940
AM406670.1	EMBL	CDS	4316305	4317300	.	-	0	ID=cds3936;Parent=gene4001;Dbxref=EnsemblGenomes-Gn:azo3940,EnsemblGenomes-Tr:CAL96556,GOA:A1KCK0,InterPro:IPR001450,InterPro:IPR011886,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1KCK0,NCBI_GP:CAL96556.1;Name=CAL96556.1;Note=Probabe iron-sulfur 4Fe-4s ferredoxin transmembrane protein. Homology to napH of E. coli of 43%25 (sprot|NAPH_ECOLI) Involved in a membrane generated redox potential. InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding domain no signal peptide 4 TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=napH;product=probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein;protein_id=CAL96556.1;transl_table=11
AM406670.1	EMBL	gene	4317297	4318157	.	-	.	ID=gene4002;Name=napG;gbkey=Gene;gene=napG;gene_biotype=protein_coding;locus_tag=azo3941
AM406670.1	EMBL	CDS	4317297	4318157	.	-	0	ID=cds3937;Parent=gene4002;Dbxref=EnsemblGenomes-Gn:azo3941,EnsemblGenomes-Tr:CAL96557,GOA:A1KCK1,InterPro:IPR001450,InterPro:IPR004494,InterPro:IPR006311,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1KCK1,NCBI_GP:CAL96557.1;Name=CAL96557.1;Note=Probable ferredoxin-type protein napG. Homology to napG of E. coli of 57%25 (sprot|NAPG_ECOLI). Involved in electron transfer in a wide variety of metabolic reactions. InterPro: MauM/NapG family ferredoxin-type protein (IPR004494)%3B 7 Fe ferredoxin (IPR000813)%3B 4Fe-4S ferredoxin%3B iron-sulfur binding domain (IPR001450) Pfam: 4Fe-4S binding domain Tigrfam: mauM_napG: MauM/NapG family ferredoxin-type protein no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=napG;product=probable ferredoxin-type protein NapG;protein_id=CAL96557.1;transl_table=11
AM406670.1	EMBL	gene	4318452	4320995	.	-	.	ID=gene4003;Name=napA2;gbkey=Gene;gene=napA2;gene_biotype=protein_coding;locus_tag=azo3942
AM406670.1	EMBL	CDS	4318452	4320995	.	-	0	ID=cds3938;Parent=gene4003;Dbxref=EnsemblGenomes-Gn:azo3942,EnsemblGenomes-Tr:CAL96558,GOA:A1KCK2,InterPro:IPR006311,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,InterPro:IPR010051,InterPro:IPR019546,InterPro:IPR027467,UniProtKB/TrEMBL:A1KCK2,NCBI_GP:CAL96558.1;Name=CAL96558.1;Note=Probable nitrate reductase. Homology to napa of A. eutrophus of 68%25 (CAA50507). ONLY EXPRESSED AT HIGH LEVELS DURING AEROBIC GROWTH. NAPAB COMPLEX RECEIVES ELECTRONS FROM THE MEMBRANE-ANCHORED TETRAHEME NAPC PROTEIN THUS ALLOWING ELECTRON FLOW BETWEEN MEMBRANE AND PERIPLASM. ESSENTIAL FUNCTION FOR NITRATE ASSIMILATION AND MAY HAVE A ROLE IN ANAEROBIC METABOLISM. Interpro: Prokaryotic molybdopterin oxidoreductase (IPR006655) Pfam: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=napA2;product=probable nitrate reductase;protein_id=CAL96558.1;transl_table=11
AM406670.1	EMBL	gene	4320997	4321251	.	-	.	ID=gene4004;Name=napD2;gbkey=Gene;gene=napD2;gene_biotype=protein_coding;locus_tag=azo3943
AM406670.1	EMBL	CDS	4320997	4321251	.	-	0	ID=cds3939;Parent=gene4004;Dbxref=EnsemblGenomes-Gn:azo3943,EnsemblGenomes-Tr:CAL96559,InterPro:IPR005623,UniProtKB/TrEMBL:A1KCK3,NCBI_GP:CAL96559.1;Name=CAL96559.1;Note=Probable NapD protein%2C 38%25 Identity to TrEMBL%3BQ6LTW0%2C Has PF03927%2C NapD protein%3BIPR005623%3BUncharacterized protein involved in formation of periplasmic nitrate reductase.%3B~Family membership;gbkey=CDS;gene=napD2;product=probable NapD protein;protein_id=CAL96559.1;transl_table=11
AM406670.1	EMBL	gene	4321248	4321751	.	-	.	ID=gene4005;Name=napF;gbkey=Gene;gene=napF;gene_biotype=protein_coding;locus_tag=azo3944
AM406670.1	EMBL	CDS	4321248	4321751	.	-	0	ID=cds3940;Parent=gene4005;Dbxref=EnsemblGenomes-Gn:azo3944,EnsemblGenomes-Tr:CAL96560,GOA:A1KCK4,InterPro:IPR001450,InterPro:IPR004496,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:A1KCK4,NCBI_GP:CAL96560.1;Name=CAL96560.1;Note=Probabel ferredoxin-type protein napF. Homology to napF of E. coli of 43%25 (sprot|NAPF_ECOLI). Involved in electron transfer ina a wide variety of metabolic reactions. InterPro: Ferredoxin-type protein NapF (IPR004496)%3B 4Fe-4S ferredoxin%2C iron-sulfur binding domain (IPR001450) Tigrfam: napF: ferredoxin-type protein NapF Pfam: 4Fe-4S binding domain no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=napF;product=probable ferredoxin-type protein NapF;protein_id=CAL96560.1;transl_table=11
AM406670.1	EMBL	gene	4321945	4325139	.	-	.	ID=gene4006;Name=azo3945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3945
AM406670.1	EMBL	CDS	4321945	4325139	.	-	0	ID=cds3941;Parent=gene4006;Dbxref=EnsemblGenomes-Gn:azo3945,EnsemblGenomes-Tr:CAL96561,GOA:A1KCK5,InterPro:IPR000014,InterPro:IPR001789,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,InterPro:IPR011006,UniProtKB/TrEMBL:A1KCK5,NCBI_GP:CAL96561.1;Name=CAL96561.1;Note=Putative hybrid sensor and regulator protein%2C%3B~Specificity unclear;gbkey=CDS;product=putative hybrid sensor and regulator protein;protein_id=CAL96561.1;transl_table=11
AM406670.1	EMBL	gene	4325235	4325588	.	+	.	ID=gene4007;Name=azo3946;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3946
AM406670.1	EMBL	CDS	4325235	4325588	.	+	0	ID=cds3942;Parent=gene4007;Dbxref=EnsemblGenomes-Gn:azo3946,EnsemblGenomes-Tr:CAL96562,GOA:A1KCK6,InterPro:IPR001789,InterPro:IPR011006,UniProtKB/TrEMBL:A1KCK6,NCBI_GP:CAL96562.1;Name=CAL96562.1;Note=Putative transcriptional regulator%2C%3B~Function unclear;gbkey=CDS;product=putative two component transcriptional regulator;protein_id=CAL96562.1;transl_table=11
AM406670.1	EMBL	gene	4325551	4328109	.	-	.	ID=gene4008;Name=azo3947;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3947
AM406670.1	EMBL	CDS	4325551	4328109	.	-	0	ID=cds3943;Parent=gene4008;Dbxref=EnsemblGenomes-Gn:azo3947,EnsemblGenomes-Tr:CAL96563,GOA:A1KCK7,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR029151,UniProtKB/TrEMBL:A1KCK7,NCBI_GP:CAL96563.1;Name=CAL96563.1;Note=Putative two component sensor protein%2C%3B~Function unclear;gbkey=CDS;product=putative two component sensor protein;protein_id=CAL96563.1;transl_table=11
AM406670.1	EMBL	gene	4328357	4329781	.	-	.	ID=gene4009;Name=azo3948;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3948
AM406670.1	EMBL	CDS	4328357	4329781	.	-	0	ID=cds3944;Parent=gene4009;Dbxref=EnsemblGenomes-Gn:azo3948,EnsemblGenomes-Tr:CAL96564,GOA:A1KCK8,InterPro:IPR000305,InterPro:IPR006054,InterPro:IPR006055,InterPro:IPR012337,InterPro:IPR013520,UniProtKB/TrEMBL:A1KCK8,NCBI_GP:CAL96564.1;Name=CAL96564.1;Note=Excinuclease cho (EC 3.1.25.-) (Endonuclease cho) (UvrC homolog protein). Incises the DNA at the 3 side of a lesion during nucleotide excision repair. Incises the DNA farther away from the lesion than uvrC. Not able to incise the 5 site of a lesion. When a lesion remains because uvrC is not able to induce the 3 incision cho incises the DNA. Then uvrC makes the 5 incision. The combined action of cho and uvrC broadens the substrate range of nucleotide excision repair (By similarity).%3B~Specificity unclear;gbkey=CDS;product=putative DNA-directed polymerase III;protein_id=CAL96564.1;transl_table=11
AM406670.1	EMBL	gene	4329784	4330548	.	-	.	ID=gene4010;Name=ubiE2;gbkey=Gene;gene=ubiE2;gene_biotype=protein_coding;locus_tag=azo3949
AM406670.1	EMBL	CDS	4329784	4330548	.	-	0	ID=cds3945;Parent=gene4010;Dbxref=EnsemblGenomes-Gn:azo3949,EnsemblGenomes-Tr:CAL96565,GOA:A1KCK9,InterPro:IPR004033,InterPro:IPR023576,InterPro:IPR029063,UniProtKB/TrEMBL:A1KCK9,NCBI_GP:CAL96565.1;Name=CAL96565.1;Note=Ubiquinone/menaquinone biosynthesis methyltransferase ubiE (EC 2.1.1.-). Methyltransferase required for the conversion of dimethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-14-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-14-benzoquinol (DMQH2) (By similarity). InterPro: ubiE/COQ5 methyltransferase rrmJ: ribosomal RNA large subunit methy%3B~High confidence in function and specificity;gbkey=CDS;gene=ubiE2;product=ubiquinone/menaquinone biosynthesis methyltransferase;protein_id=CAL96565.1;transl_table=11
AM406670.1	EMBL	gene	4330672	4330863	.	-	.	ID=gene4011;Name=azo3950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3950
AM406670.1	EMBL	CDS	4330672	4330863	.	-	0	ID=cds3946;Parent=gene4011;Dbxref=EnsemblGenomes-Gn:azo3950,EnsemblGenomes-Tr:CAL96566,InterPro:IPR021853,UniProtKB/TrEMBL:A1KCL0,NCBI_GP:CAL96566.1;Name=CAL96566.1;Note=Conserved hypothetical protein. Homology to RS02765 of R.solanacearum of 43%25 (trembl:Q8XWT5). No domains predicted. No TMHs. No signal peptide.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96566.1;transl_table=11
AM406670.1	EMBL	gene	4330962	4333160	.	-	.	ID=gene4012;Name=spoT;gbkey=Gene;gene=spoT;gene_biotype=protein_coding;locus_tag=azo3951
AM406670.1	EMBL	CDS	4330962	4333160	.	-	0	ID=cds3947;Parent=gene4012;Dbxref=EnsemblGenomes-Gn:azo3951,EnsemblGenomes-Tr:CAL96567,GOA:A1KCL1,InterPro:IPR002912,InterPro:IPR003607,InterPro:IPR004095,InterPro:IPR004811,InterPro:IPR007685,InterPro:IPR012675,InterPro:IPR012676,UniProtKB/TrEMBL:A1KCL1,NCBI_GP:CAL96567.1;Name=CAL96567.1;Note=Guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=spoT;product=guanosine-3'%2C5'-bis(diphosphate) 3'-diphosphatase;protein_id=CAL96567.1;transl_table=11
AM406670.1	EMBL	gene	4333183	4333398	.	-	.	ID=gene4013;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=azo3952
AM406670.1	EMBL	CDS	4333183	4333398	.	-	0	ID=cds3948;Parent=gene4013;Dbxref=EnsemblGenomes-Gn:azo3952,EnsemblGenomes-Tr:CAL96568,GOA:A1KCL2,InterPro:IPR003716,InterPro:IPR006110,InterPro:IPR012293,NCBI_GP:CAL96568.1;Name=CAL96568.1;Note=DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (Transcriptase omega chain) (RNA polymerase omega subunit). Promotes RNA polymerase assembly. Latches the N-and C-terminal regions of the beta subunit thereby facilitating its interaction with the beta and alpha subunits. Similar to SWISSPROT: sprot|RPOZ_ECOLI (45%25 Escherichia coli%2C RpoZ) / sprot|RPOZ_RALSO (67%25 Ralstonia solanacearum (Pseudomonas solanacearum)%2C RpoZ or rsc2154) InterPro: IPR003716 RNA_pol_omega. TIGRFAM: TIGR00690 DNA-directed RNA polymerase%2C omega subunit.%3B~High confidence in function and specificity;gbkey=CDS;gene=rpoZ;product=DNA-directed RNA polymerase;protein_id=CAL96568.1;transl_table=11
AM406670.1	EMBL	gene	4333401	4334015	.	-	.	ID=gene4014;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=azo3953
AM406670.1	EMBL	CDS	4333401	4334015	.	-	0	ID=cds3949;Parent=gene4014;Dbxref=EnsemblGenomes-Gn:azo3953,EnsemblGenomes-Tr:CAL96569,GOA:A1KCL3,InterPro:IPR008144,InterPro:IPR008145,InterPro:IPR017665,InterPro:IPR020590,InterPro:IPR027417,UniProtKB/TrEMBL:A1KCL3,NCBI_GP:CAL96569.1;Name=CAL96569.1;Note=Guanylate kinase (Deoxyguanylate kinase) (GMP kinase) (Guanosine monophosphate kinase) InterPro: Guanylate kinase%3B~High confidence in function and specificity;gbkey=CDS;gene=gmk;product=guanylate kinase;protein_id=CAL96569.1;transl_table=11
AM406670.1	EMBL	gene	4334206	4334748	.	-	.	ID=gene4015;Name=azo3954;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3954
AM406670.1	EMBL	CDS	4334206	4334748	.	-	0	ID=cds3950;Parent=gene4015;Dbxref=EnsemblGenomes-Gn:azo3954,EnsemblGenomes-Tr:CAL96570,GOA:A1KCL4,InterPro:IPR000868,UniProtKB/TrEMBL:A1KCL4,NCBI_GP:CAL96570.1;Name=CAL96570.1;Note=Similar to TREMBL:Q9HXG0 (60%25 identity)%3B TREMBL:Q7NRZ4 (45%25 identity)%3B TREMBL:Q88GB8 (43%25 identity). InterPro (IPR000868): Isochorismatase hydrolase. Pfam (PF00857): Isochorismatase family.%3B~Specificity unclear;gbkey=CDS;product=isochorismatase family protein;protein_id=CAL96570.1;transl_table=11
AM406670.1	EMBL	gene	4335032	4335799	.	+	.	ID=gene4016;Name=azo3955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3955
AM406670.1	EMBL	CDS	4335032	4335799	.	+	0	ID=cds3951;Parent=gene4016;Dbxref=EnsemblGenomes-Gn:azo3955,EnsemblGenomes-Tr:CAL96571,InterPro:IPR017166,InterPro:IPR027417,UniProtKB/TrEMBL:A1KCL5,NCBI_GP:CAL96571.1;Name=CAL96571.1;Note=Conserved hypothetical protein. Homology to Daro03000439 of Dechloromonas aromatica of 48%25 (gi|41725494|ref|ZP_00152252.1|(NBCI ENTREZ)). No domains predicted. No signal peptide. No TMHs.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96571.1;transl_table=11
AM406670.1	EMBL	gene	4335858	4337279	.	+	.	ID=gene4017;Name=azo3956;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3956
AM406670.1	EMBL	CDS	4335858	4337279	.	+	0	ID=cds3952;Parent=gene4017;Dbxref=EnsemblGenomes-Gn:azo3956,EnsemblGenomes-Tr:CAL96572,GOA:A1KCL6,InterPro:IPR001126,UniProtKB/TrEMBL:A1KCL6,NCBI_GP:CAL96572.1;Name=CAL96572.1;Note=Conserved hypothetical protein%2C has weak homlogs in the Database. TrEMBL%3BQ88I83(25%25 Identity). gi|46140644|ref|ZP_00152253.2| %2C 30%25 Identity to Dechloromonas aromatica RCB%2CNucleotidyltransferase/DNA polymerase involved in DNA repair Has PF00817%2CimpB/mucB/samB family%3B IPR001126%2C UMUC_like%3B These proteins are involved in UV protection.In Escherichia coli%2C UV and many chemicals appear to cause mutagenesis by a process of translesion synthesis that requires DNA polymerase III and the SOS-regulated proteins UmuD%2C UmuC and RecA. This machinery allows the replication to continue through DNA lesion%2C and therefore avoid lethal interruption of DNA replication after DNA damage. The UmuC is a well conserved protein in prokaryotes%2C with a homologue in yeast.;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96572.1;transl_table=11
AM406670.1	EMBL	gene	4337288	4340482	.	+	.	ID=gene4018;Name=azo3957;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3957
AM406670.1	EMBL	CDS	4337288	4340482	.	+	0	ID=cds3953;Parent=gene4018;Dbxref=EnsemblGenomes-Gn:azo3957,EnsemblGenomes-Tr:CAL96573,GOA:A1KCL7,InterPro:IPR003141,InterPro:IPR004013,InterPro:IPR004365,InterPro:IPR004805,InterPro:IPR011708,InterPro:IPR016195,InterPro:IPR023073,InterPro:IPR029460,NCBI_GP:CAL96573.1;Name=CAL96573.1;Note=Region start changed from 4336170 to 4337262 (-1092 bases);gbkey=CDS;product=DNA polymerase III%2C alpha subunit%2C putative;protein_id=CAL96573.1;transl_table=11
AM406670.1	EMBL	gene	4340498	4340884	.	-	.	ID=gene4019;Name=pcaC;gbkey=Gene;gene=pcaC;gene_biotype=protein_coding;locus_tag=azo3958
AM406670.1	EMBL	CDS	4340498	4340884	.	-	0	ID=cds3954;Parent=gene4019;Dbxref=EnsemblGenomes-Gn:azo3958,EnsemblGenomes-Tr:CAL96574,GOA:A1KCL8,InterPro:IPR003779,InterPro:IPR029032,UniProtKB/TrEMBL:A1KCL8,NCBI_GP:CAL96574.1;Name=CAL96574.1;Note=Carboxymuconolactone decarboxylase family protein%2C65%25 Identity (78%25 similarity) to TrEMBL%3BQ8EKK9. Has PF02627%2C Carboxymuconolactone decarboxylase family%3B IPR003779%2C CMD: Carboxymuconolactone decarboxylase (CMD)is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins (e.g. O67982) CMD represents the C-terminal domain%2C Abhydrolase_1 represents the N-terminal domain.%3B~High confidence in function and specificity;gbkey=CDS;gene=pcaC;product=4-carboxymuconolactone decarboxylase;protein_id=CAL96574.1;transl_table=11
AM406670.1	EMBL	gene	4340829	4341284	.	-	.	ID=gene4020;Name=cadR;gbkey=Gene;gene=cadR;gene_biotype=protein_coding;locus_tag=azo3959
AM406670.1	EMBL	CDS	4340829	4341284	.	-	0	ID=cds3955;Parent=gene4020;Dbxref=EnsemblGenomes-Gn:azo3959,EnsemblGenomes-Tr:CAL96575,GOA:A1KCL9,InterPro:IPR000551,InterPro:IPR009061,InterPro:IPR015358,UniProtKB/TrEMBL:A1KCL9,NCBI_GP:CAL96575.1;Name=CAL96575.1;Note=Putative MerR-family transcriptional regulator%2C%3B~Family membership;gbkey=CDS;gene=cadR;product=putative MerR-family transcriptional regulator;protein_id=CAL96575.1;transl_table=11
AM406670.1	EMBL	gene	4341451	4342317	.	-	.	ID=gene4021;Name=yicC;gbkey=Gene;gene=yicC;gene_biotype=protein_coding;locus_tag=azo3960
AM406670.1	EMBL	CDS	4341451	4342317	.	-	0	ID=cds3956;Parent=gene4021;Dbxref=EnsemblGenomes-Gn:azo3960,EnsemblGenomes-Tr:CAL96576,InterPro:IPR005229,InterPro:IPR013527,InterPro:IPR013551,UniProtKB/TrEMBL:A1KCM0,NCBI_GP:CAL96576.1;Name=CAL96576.1;Note=Putative alpha helix protein%2CyicC.42%25 identity(57%25 Similarity) to SwissProt%3BP23839%2C TrEMBL%3BQ8XD97(42%25). TrEMBL%3B Q8XXF8(45%25 identity). Coils2 program reports the presence of Coiled-Coil. Has PF03755%2C YicC-like family%2C N-terminal region%3B IPR005229%2C Cons_hypoth255: Family of bacterial proteins. Although poorly characterised%2C the members of this protein family have been demonstrated to play a role in stationary phase survival. These proteins are not essential during stationary phase.%3B~Conserved hypothetical protein;gbkey=CDS;gene=yicC;product=putative alpha helix protein%2CyicC;protein_id=CAL96576.1;transl_table=11
AM406670.1	EMBL	gene	4342320	4343360	.	+	.	ID=gene4022;Name=azo3961;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3961
AM406670.1	EMBL	CDS	4342320	4343360	.	+	0	ID=cds3957;Parent=gene4022;Dbxref=EnsemblGenomes-Gn:azo3961,EnsemblGenomes-Tr:CAL96577,GOA:A1KCM1,InterPro:IPR000719,InterPro:IPR008271,InterPro:IPR011009,UniProtKB/TrEMBL:A1KCM1,NCBI_GP:CAL96577.1;Name=CAL96577.1;Note=Putative serine/threonine protein kinase%2C%3B~Family membership;gbkey=CDS;product=putative serine/threonine protein kinase;protein_id=CAL96577.1;transl_table=11
AM406670.1	EMBL	gene	4343372	4344292	.	+	.	ID=gene4023;Name=azo3962;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3962
AM406670.1	EMBL	CDS	4343372	4344292	.	+	0	ID=cds3958;Parent=gene4023;Dbxref=EnsemblGenomes-Gn:azo3962,EnsemblGenomes-Tr:CAL96578,GOA:A1KCM2,InterPro:IPR001932,InterPro:IPR015655,UniProtKB/TrEMBL:A1KCM2,NCBI_GP:CAL96578.1;Name=CAL96578.1;Note=Putative phosphoprotein phosphatase%2C%3B~Conserved hypothetical protein;gbkey=CDS;product=putative phosphoprotein phosphatase;protein_id=CAL96578.1;transl_table=11
AM406670.1	EMBL	gene	4344315	4345034	.	+	.	ID=gene4024;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=azo3963
AM406670.1	EMBL	CDS	4344315	4345034	.	+	0	ID=cds3959;Parent=gene4024;Dbxref=EnsemblGenomes-Gn:azo3963,EnsemblGenomes-Tr:CAL96579,GOA:A1KCM3,InterPro:IPR001247,InterPro:IPR002381,InterPro:IPR015847,InterPro:IPR018336,InterPro:IPR020568,InterPro:IPR027408,NCBI_GP:CAL96579.1;Name=CAL96579.1;Note=Ribonuclease PH (EC 2.7.7.56) (tRNA nucleotidyltransferase). Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates.%3B~High confidence in function and specificity;gbkey=CDS;gene=rph;product=ribonuclease PH;protein_id=CAL96579.1;transl_table=11
AM406670.1	EMBL	gene	4345038	4345634	.	+	.	ID=gene4025;Name=azo3964;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3964
AM406670.1	EMBL	CDS	4345038	4345634	.	+	0	ID=cds3960;Parent=gene4025;Dbxref=EnsemblGenomes-Gn:azo3964,EnsemblGenomes-Tr:CAL96580,GOA:A1KCM4,InterPro:IPR002637,InterPro:IPR020922,InterPro:IPR029001,UniProtKB/TrEMBL:A1KCM4,NCBI_GP:CAL96580.1;Name=CAL96580.1;Note=Protein of Ham1 family%2C 76%25 Identity to TrEMBL%3B Q8G9C9%2C SProt%3BQ8XXF4(58%25) Has PF01725%2C Ham1 family%3B IPR002637%2C Ham1p_like%3B This family consists of the HAM1 protein P47119 and hypothetical archaeal bacterial and C. elegans proteins. HAM1 controls 6-N-hydroxylaminopurine (HAP) sensitivity and mutagenesis in S. cerevisiae P47119. The HAM1 protein protects the cell from HAP%2C either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions.;gbkey=CDS;product=Conserved Hypothetical protein;protein_id=CAL96580.1;transl_table=11
AM406670.1	EMBL	gene	4345631	4346854	.	+	.	ID=gene4026;Name=azo3965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3965
AM406670.1	EMBL	CDS	4345631	4346854	.	+	0	ID=cds3961;Parent=gene4026;Dbxref=EnsemblGenomes-Gn:azo3965,EnsemblGenomes-Tr:CAL96581,GOA:A1KCM5,InterPro:IPR004559,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR010723,InterPro:IPR023404,UniProtKB/TrEMBL:A1KCM5,NCBI_GP:CAL96581.1;Name=CAL96581.1;Note=Putative anaerobic coproporphyrinogen iii oxidase oxidoreductase protein. TIGRFAM: hemN_rel: oxygen-independent coproporphyrinogen III oxidase%2C putative%3B~Specificity unclear;gbkey=CDS;product=coproporphyrinogen oxidase;protein_id=CAL96581.1;transl_table=11
AM406670.1	EMBL	gene	4346862	4347371	.	-	.	ID=gene4027;Name=azo3966;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3966
AM406670.1	EMBL	CDS	4346862	4347371	.	-	0	ID=cds3962;Parent=gene4027;Dbxref=EnsemblGenomes-Gn:azo3966,EnsemblGenomes-Tr:CAL96582,UniProtKB/TrEMBL:A1KCM6,NCBI_GP:CAL96582.1;Name=CAL96582.1;Note=Hypothetical protein predicted by Glimmer/Critica. No homology of the entire protein with the data bank. No domains predicted. No signal peptide. No TMHs;gbkey=CDS;product=hypothetical protein predicted by Glimmer/Critica;protein_id=CAL96582.1;transl_table=11
AM406670.1	EMBL	gene	4347471	4349312	.	-	.	ID=gene4028;Name=azo3967;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3967
AM406670.1	EMBL	CDS	4347471	4349312	.	-	0	ID=cds3963;Parent=gene4028;Dbxref=EnsemblGenomes-Gn:azo3967,EnsemblGenomes-Tr:CAL96583,GOA:A1KCM7,InterPro:IPR002142,InterPro:IPR004634,InterPro:IPR004635,InterPro:IPR029045,UniProtKB/TrEMBL:A1KCM7,NCBI_GP:CAL96583.1;Name=CAL96583.1;Note=Putative protease IV. homology to sspA of E. coli of 38%25 (sprot|SPPA_ECOLI). Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane. InterPro: Signal peptide peptidase SppA 67K type (IPR004634)%3B Signal peptide peptidase SppA 36K type (IPR004635)%3B Pepditase family U7 (IPR002142) Pfam: Peptidase family U7 Tigrfam: SppA_67K: signal peptide peptidase SppA%3B sppA_dom: signal peptide peptidase SppA no signal peptide probable 1 TMH%3B~High confidence in function and specificity;gbkey=CDS;product=putative protease IV;protein_id=CAL96583.1;transl_table=11
AM406670.1	EMBL	gene	4349397	4350149	.	-	.	ID=gene4029;Name=azo3968;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3968
AM406670.1	EMBL	CDS	4349397	4350149	.	-	0	ID=cds3964;Parent=gene4029;Dbxref=EnsemblGenomes-Gn:azo3968,EnsemblGenomes-Tr:CAL96584,GOA:A1KCM8,InterPro:IPR003358,InterPro:IPR029063,NCBI_GP:CAL96584.1;Name=CAL96584.1;Note=Conserved hypothetical tRNA (guanine-N(7)-)-methyltransferase. Homology to Azaoracus sp of 80%25 (sprot|TRMB_AZOSE). Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (By similarity). InterPro: Putative methyltransferase (IPR003358)%3B conserved hypothetical protein 91 (IPR004395)%3B SAM (and some other nucleotide) binding motif (IPR000051) Pfam: Putative methyltransferase Tigrfam: TIGR00091: conserved hypothetical protein no signal peptide no TMHs%3B~Family membership;gbkey=CDS;product=conserved hypothetical tRNA (guanine-N7-)-methyltransferase;protein_id=CAL96584.1;transl_table=11
AM406670.1	EMBL	gene	4350146	4350931	.	-	.	ID=gene4030;Name=azo3969;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3969
AM406670.1	EMBL	CDS	4350146	4350931	.	-	0	ID=cds3965;Parent=gene4030;Dbxref=EnsemblGenomes-Gn:azo3969,EnsemblGenomes-Tr:CAL96585,GOA:A1KCM9,InterPro:IPR008867,InterPro:IPR013785,NCBI_GP:CAL96585.1;Name=CAL96585.1;Note=Thiazole biosynthesis protein%3B~High confidence in function and specificity;gbkey=CDS;product=thiamine biosynthesis protein;protein_id=CAL96585.1;transl_table=11
AM406670.1	EMBL	gene	4350986	4351189	.	-	.	ID=gene4031;Name=thiS;gbkey=Gene;gene=thiS;gene_biotype=protein_coding;locus_tag=azo3970
AM406670.1	EMBL	CDS	4350986	4351189	.	-	0	ID=cds3966;Parent=gene4031;Dbxref=EnsemblGenomes-Gn:azo3970,EnsemblGenomes-Tr:CAL96586,InterPro:IPR003749,InterPro:IPR010035,InterPro:IPR012675,InterPro:IPR016155,UniProtKB/TrEMBL:A1KCN0,NCBI_GP:CAL96586.1;Name=CAL96586.1;Note=Putative sulfur transfer protein involved in thimanin biosynsthesis.%3B~High confidence in function and specificity;gbkey=CDS;gene=thiS;product=thiamine biosynthesis protein ThiS;protein_id=CAL96586.1;transl_table=11
AM406670.1	EMBL	gene	4351391	4352518	.	+	.	ID=gene4032;Name=metX;gbkey=Gene;gene=metX;gene_biotype=protein_coding;locus_tag=azo3971
AM406670.1	EMBL	CDS	4351391	4352518	.	+	0	ID=cds3967;Parent=gene4032;Dbxref=EnsemblGenomes-Gn:azo3971,EnsemblGenomes-Tr:CAL96587,GOA:A1KCN1,InterPro:IPR000073,InterPro:IPR008220,InterPro:IPR029058,NCBI_GP:CAL96587.1;Name=CAL96587.1;Note=Probable homoserine O-acetyltransferase. Homology to metX of L meyeri of 47%25 (SWISSPROT:METX_LEPME). Involved in methionine biosynthesis. catalytic activity: acetyl-coa + l-homoserine %3D coa + o-acetyl-l- homoserine. InterPro: Alpha/beta hydrolase fold (IPR000073) Pfam: alpha/beta hydrolase fold no signal peptide no TMHs%3B~High confidence in function and specificity;gbkey=CDS;gene=metX;product=probable homoserine O-acetyltransferase;protein_id=CAL96587.1;transl_table=11
AM406670.1	EMBL	gene	4352521	4353108	.	+	.	ID=gene4033;Name=metW;gbkey=Gene;gene=metW;gene_biotype=protein_coding;locus_tag=azo3972
AM406670.1	EMBL	CDS	4352521	4353108	.	+	0	ID=cds3968;Parent=gene4033;Dbxref=EnsemblGenomes-Gn:azo3972,EnsemblGenomes-Tr:CAL96588,GOA:A1KCN2,InterPro:IPR010743,InterPro:IPR029063,UniProtKB/TrEMBL:A1KCN2,NCBI_GP:CAL96588.1;Name=CAL96588.1;Note=Q8YDE4:20%25 identity%2C 37%25 similarity. Ubiquinone/menaquinone biosynthesis methyltransferase ubiE . Methyltransferase required for the conversion of dimethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-14-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-14-benzoquinol (DMQH2) (By similarity). METHIONINE BIOSYNTHESIS PROTEIN Pfam:PPTA(protein prenyl transferase alpha subunit)%2C FERM domain TIGRFAM:rmJ: ribosomal RNA large subunit methylation InterPro IPR000051%3B SAM_bind. IPR004034%3B Ubi/men_Metransf. IPR004033%3B UbiE/COQ5_Metrf. HTH predicted nucleic acid binding motif PROSITE PS01183%3B UBIE_1%3B 1. PS01184%3B UBIE_2%3B FALSE_NEG.%3B~Family membership;gbkey=CDS;gene=metW;product=putative methionine biosynthesis protein;protein_id=CAL96588.1;transl_table=11
AM406670.1	EMBL	gene	4353124	4353927	.	-	.	ID=gene4034;Name=azo3973;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3973
AM406670.1	EMBL	CDS	4353124	4353927	.	-	0	ID=cds3969;Parent=gene4034;Dbxref=EnsemblGenomes-Gn:azo3973,EnsemblGenomes-Tr:CAL96589,InterPro:IPR002477,InterPro:IPR023346,UniProtKB/TrEMBL:A1KCN3,NCBI_GP:CAL96589.1;Name=CAL96589.1;Note=Hypothetical protein. no homology of the entire protein to the data bank. Pfam: putative peptidoglycan binding domain. This domain%2C peptidoglycan binding domain 1%2C may have a general peptidoglycan binding function. It is composed of three alpha helices and is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. no signal peptide. no TMHs;gbkey=CDS;product=hypothetical protein;protein_id=CAL96589.1;transl_table=11
AM406670.1	EMBL	gene	4354102	4354419	.	-	.	ID=gene4035;Name=azo3974;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3974
AM406670.1	EMBL	CDS	4354102	4354419	.	-	0	ID=cds3970;Parent=gene4035;Dbxref=EnsemblGenomes-Gn:azo3974,EnsemblGenomes-Tr:CAL96590,UniProtKB/TrEMBL:A1KCN4,NCBI_GP:CAL96590.1;Name=CAL96590.1;Note=Conserved hypothetical protein. Homology to bb4936 of B. bronchiseptica of 36%25 (trembl|Q7WDQ2). no domains predicted. no signal peptide. no TMHs;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96590.1;transl_table=11
AM406670.1	EMBL	gene	4354671	4356191	.	+	.	ID=gene4036;Name=ampG;gbkey=Gene;gene=ampG;gene_biotype=protein_coding;locus_tag=azo3975
AM406670.1	EMBL	CDS	4354671	4356191	.	+	0	ID=cds3971;Parent=gene4036;Dbxref=EnsemblGenomes-Gn:azo3975,EnsemblGenomes-Tr:CAL96591,GOA:A1KCN5,InterPro:IPR011701,InterPro:IPR016196,UniProtKB/TrEMBL:A1KCN5,NCBI_GP:CAL96591.1;Name=CAL96591.1;Note=AmpG protein. Probably acts as a permease in the beta-lactamase induction system and in peptidoglycan recycling.Belong to the BT1 family of proteins. Presence of DUF domains and signail peptide. 11 tranmembrane helices.36%25 identity and 50%25 similarity to E.coli AmpG protein.(JW0423) 2A0125: AmpG-related permease%3B~Family membership;gbkey=CDS;gene=ampG;product=putative AmpG protein;protein_id=CAL96591.1;transl_table=11
AM406670.1	EMBL	gene	4356228	4356950	.	+	.	ID=gene4037;Name=azo3976;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3976
AM406670.1	EMBL	CDS	4356228	4356950	.	+	0	ID=cds3972;Parent=gene4037;Dbxref=EnsemblGenomes-Gn:azo3976,EnsemblGenomes-Tr:CAL96592,GOA:A1KCN6,InterPro:IPR005122,UniProtKB/TrEMBL:A1KCN6,NCBI_GP:CAL96592.1;Name=CAL96592.1;Note=Probable uracil-DNA glycosylase. Has PF03167%2CUracil DNA glycosylase superfamily%3BIPR005122 UDNA_glycsylseSF%3B Uracil-DNA glycosylase is a DNA repair enzyme that excises uracil residues from DNA by cleaving the N-glycosylic bond. Uracil in DNA can arise as a result of misincorportation of dUMP residues by DNA polymerase or deamination of cytosine. The sequence of uracil-DNA glycosylase is extremely well conserved;gbkey=CDS;product=probable uracil-DNA glycosylase;protein_id=CAL96592.1;transl_table=11
AM406670.1	EMBL	gene	4357121	4357792	.	+	.	ID=gene4038;Name=azo3977;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3977
AM406670.1	EMBL	CDS	4357121	4357792	.	+	0	ID=cds3973;Parent=gene4038;Dbxref=EnsemblGenomes-Gn:azo3977,EnsemblGenomes-Tr:CAL96593,GOA:A1KCN7,InterPro:IPR001765,InterPro:IPR015892,UniProtKB/TrEMBL:A1KCN7,NCBI_GP:CAL96593.1;Name=CAL96593.1;Note=Region start changed from 4356747 to 4357095 (-348 bases);gbkey=CDS;product=putative carbonic anhydrase;protein_id=CAL96593.1;transl_table=11
AM406670.1	EMBL	gene	4358238	4360409	.	-	.	ID=gene4039;Name=priA;gbkey=Gene;gene=priA;gene_biotype=protein_coding;locus_tag=azo3978
AM406670.1	EMBL	CDS	4358238	4360409	.	-	0	ID=cds3974;Parent=gene4039;Dbxref=EnsemblGenomes-Gn:azo3978,EnsemblGenomes-Tr:CAL96594,GOA:A1KCN8,InterPro:IPR001650,InterPro:IPR005259,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:A1KCN8,NCBI_GP:CAL96594.1;Name=CAL96594.1;Note=Primosomal protein N (Replication factor Y). Recognizes a specific hairpin sequence on phiX ssDNA. This structure is then recognized and bound by proteins priB and priC. Formation of the primosome proceeds with the subsequent actions of dnaB dnaC dnaT and primase. PriA then functions as a helicase within the primosome. InterPro: DEAD/DEAH box helicase%3B~High confidence in function and specificity;gbkey=CDS;gene=priA;product=primosomal protein N' (Replication factor Y);protein_id=CAL96594.1;transl_table=11
AM406670.1	EMBL	gene	4360801	4361877	.	-	.	ID=gene4040;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=azo3979
AM406670.1	EMBL	CDS	4360801	4361877	.	-	0	ID=cds3975;Parent=gene4040;Dbxref=EnsemblGenomes-Gn:azo3979,EnsemblGenomes-Tr:CAL96595,GOA:A1KCN9,InterPro:IPR000257,InterPro:IPR006361,NCBI_GP:CAL96595.1;Name=CAL96595.1;Note=Uroporphyrinogen decarboxylase (URO-D) (UPD). catalytic activity: uroporphyrinogen-iii %3D coproporphyrinogen + 4 co(2). pathway: porphyrin biosynthesis.%3B~High confidence in function and specificity;gbkey=CDS;gene=hemE;product=uroporphyrinogen decarboxylase;protein_id=CAL96595.1;transl_table=11
AM406670.1	EMBL	gene	4361965	4363437	.	-	.	ID=gene4041;Name=trkH2;gbkey=Gene;gene=trkH2;gene_biotype=protein_coding;locus_tag=azo3980
AM406670.1	EMBL	CDS	4361965	4363437	.	-	0	ID=cds3976;Parent=gene4041;Dbxref=EnsemblGenomes-Gn:azo3980,EnsemblGenomes-Tr:CAL96596,GOA:A1KCP0,InterPro:IPR003445,InterPro:IPR004772,UniProtKB/TrEMBL:A1KCP0,NCBI_GP:CAL96596.1;Name=CAL96596.1;Note=This proteins are involved in active potassium uptake utilising ATP in the process. TrkH a member of the family TRKH is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in E. coli.Requires TrkE for transport activity. 38%25 Cat_transpt.IPR004772%3B K_transptTrk. Pfam:PF02386%3B TrkH%3B 1. TIGRFAMs:TIGR00933%3B 2a38%3B 1. TMHelix:10. Signal peptide present.%3B~High confidence in function and specificity;gbkey=CDS;gene=trkH2;product=putative potassium system uptake protein;protein_id=CAL96596.1;transl_table=11
AM406670.1	EMBL	gene	4363437	4364840	.	-	.	ID=gene4042;Name=trkA2;gbkey=Gene;gene=trkA2;gene_biotype=protein_coding;locus_tag=azo3981
AM406670.1	EMBL	CDS	4363437	4364840	.	-	0	ID=cds3977;Parent=gene4042;Dbxref=EnsemblGenomes-Gn:azo3981,EnsemblGenomes-Tr:CAL96597,GOA:A1KCP1,InterPro:IPR003148,InterPro:IPR006036,InterPro:IPR006037,InterPro:IPR016040,UniProtKB/TrEMBL:A1KCP1,NCBI_GP:CAL96597.1;Name=CAL96597.1;Note=Potassium uptake protein TrkA. Part of the constitutive potassium transport systems trkG and trkH. May regulate the transport activity of trkG and trkH systems. Binds to NAD+ and NADH.Peripherally bound to the inner side of the inner membrane via the trkG and trkH proteins. 51%25 NAD_BS.IPR006036%3B TrkA_Kuptake.IPR003148%3B TrkA_N. IPR006037%3B TrkAC. Pfam:PF02080%3B TrkA-C%3B 2.PF02254%3B TrkA-N%3B 2.%3B~High confidence in function and specificity;gbkey=CDS;gene=trkA2;product=putative potassium uptake protein TrkA;protein_id=CAL96597.1;transl_table=11
AM406670.1	EMBL	gene	4364923	4366170	.	-	.	ID=gene4043;Name=ntrX;gbkey=Gene;gene=ntrX;gene_biotype=protein_coding;locus_tag=azo3982
AM406670.1	EMBL	CDS	4364923	4366170	.	-	0	ID=cds3978;Parent=gene4043;Dbxref=EnsemblGenomes-Gn:azo3982,EnsemblGenomes-Tr:CAL96598,GOA:A1KCP2,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR002197,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR027417,UniProtKB/TrEMBL:A1KCP2,NCBI_GP:CAL96598.1;Name=CAL96598.1;Note=Probable nitrogen assimilation regulatory protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=ntrX;product=probable nitrogen assimilation regulatory protein;protein_id=CAL96598.1;transl_table=11
AM406670.1	EMBL	gene	4366174	4368294	.	-	.	ID=gene4044;Name=ntrY;gbkey=Gene;gene=ntrY;gene_biotype=protein_coding;locus_tag=azo3983
AM406670.1	EMBL	CDS	4366174	4368294	.	-	0	ID=cds3979;Parent=gene4044;Dbxref=EnsemblGenomes-Gn:azo3983,EnsemblGenomes-Tr:CAL96599,GOA:A1KCP3,InterPro:IPR000014,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,InterPro:IPR017232,UniProtKB/TrEMBL:A1KCP3,NCBI_GP:CAL96599.1;Name=CAL96599.1;Note=Probable nitrogen regulation protein%2C%3B~High confidence in function and specificity;gbkey=CDS;gene=ntrY;product=probable nitrogen regulation protein;protein_id=CAL96599.1;transl_table=11
AM406670.1	EMBL	gene	4368291	4368995	.	-	.	ID=gene4045;Name=azo3984;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3984
AM406670.1	EMBL	CDS	4368291	4368995	.	-	0	ID=cds3980;Parent=gene4045;Dbxref=EnsemblGenomes-Gn:azo3984,EnsemblGenomes-Tr:CAL96600,InterPro:IPR025500,UniProtKB/TrEMBL:A1KCP4,NCBI_GP:CAL96600.1;Name=CAL96600.1;Note=Conserved hypothetical secreted protein. Homology to RS02253 of R.solanacearum of 32%25 (trembl|Q8Y3A4(SRS)). No domains predicted. No TMHs. Signal peptide present.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical secreted protein;protein_id=CAL96600.1;transl_table=11
AM406670.1	EMBL	gene	4368856	4370136	.	-	.	ID=gene4046;Name=azo3985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3985
AM406670.1	EMBL	CDS	4368856	4370136	.	-	0	ID=cds3981;Parent=gene4046;Dbxref=EnsemblGenomes-Gn:azo3985,EnsemblGenomes-Tr:CAL96601,GOA:A1KCP5,InterPro:IPR001678,InterPro:IPR004573,InterPro:IPR006027,InterPro:IPR018314,InterPro:IPR023267,InterPro:IPR029063,UniProtKB/TrEMBL:A1KCP5,NCBI_GP:CAL96601.1;Name=CAL96601.1;Note=SUN protein%3B~Conserved hypothetical protein;gbkey=CDS;product=Sun protein;protein_id=CAL96601.1;transl_table=11
AM406670.1	EMBL	gene	4370229	4371083	.	-	.	ID=gene4047;Name=speE2;gbkey=Gene;gene=speE2;gene_biotype=protein_coding;locus_tag=azo3986
AM406670.1	EMBL	CDS	4370229	4371083	.	-	0	ID=cds3982;Parent=gene4047;Dbxref=EnsemblGenomes-Gn:azo3986,EnsemblGenomes-Tr:CAL96602,GOA:A1KCP6,InterPro:IPR001045,InterPro:IPR029063,UniProtKB/TrEMBL:A1KCP6,NCBI_GP:CAL96602.1;Name=CAL96602.1;Note=Spermidine synthase counts to a group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes%3B spermidine synthase%2C spermine synthase and putrescine N-methyltransferase. Similar to sprot|SPEE_NITEU (39%25) and to sprot|SPE1_PSEAE (34%25). ProSite (PS50193): SAM (and some other nucleotide) binding motif Pfam (PF01564): Spermidine synthase TIGRFAM: speE%2Cspermidine synthase%3B~Specificity unclear;gbkey=CDS;gene=speE2;product=probable spermidine synthase;protein_id=CAL96602.1;transl_table=11
AM406670.1	EMBL	gene	4371199	4371963	.	-	.	ID=gene4048;Name=azo3987;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3987
AM406670.1	EMBL	CDS	4371199	4371963	.	-	0	ID=cds3983;Parent=gene4048;Dbxref=EnsemblGenomes-Gn:azo3987,EnsemblGenomes-Tr:CAL96603,GOA:A1KCP7,InterPro:IPR002781,UniProtKB/TrEMBL:A1KCP7,NCBI_GP:CAL96603.1;Name=CAL96603.1;Note=Conserved hypothetical membrane protein. TREMBL:Q88FZ3: 44%25 identity%2C 60%25 similarity InterPro:IPR002781%3B DUF81.This domain is found in integral membrane proteins of prokaryotes which are uncharacterized Pfam:PF01925%3B DUF81 Signal peptide present and presence of 6 transmembrane helices.%3B~Conserved hypothetical protein;gbkey=CDS;product=conserved hypothetical membrane protein;protein_id=CAL96603.1;transl_table=11
AM406670.1	EMBL	gene	4372023	4373381	.	-	.	ID=gene4049;Name=thdF;gbkey=Gene;gene=thdF;gene_biotype=protein_coding;locus_tag=azo3988
AM406670.1	EMBL	CDS	4372023	4373381	.	-	0	ID=cds3984;Parent=gene4049;Dbxref=EnsemblGenomes-Gn:azo3988,EnsemblGenomes-Tr:CAL96604,GOA:A1KCP8,InterPro:IPR004520,InterPro:IPR005225,InterPro:IPR006073,InterPro:IPR018948,InterPro:IPR025867,InterPro:IPR027266,InterPro:IPR027368,InterPro:IPR027417,NCBI_GP:CAL96604.1;Name=CAL96604.1;Note=tRNA modification GTPase Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine which is found in the wobble position of some tRNAs (By similarity). Thiophene and furan oxidation potentialities having ABC tzransporter function. Presence of signal peptide%2C DUF domains%2Cextracellular link domains and thiesterase domains. Similarity to Ras family of proteins. 52%25 identity and 63%25 similarity to Dechloromonas aromatica ThdF thdF: tRNA modification GTPase TrmE%3B~Family membership;gbkey=CDS;gene=thdF;product=probable tRNA modification GTPase;protein_id=CAL96604.1;transl_table=11
AM406670.1	EMBL	gene	4373353	4374969	.	-	.	ID=gene4050;Name=azo3989;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3989
AM406670.1	EMBL	CDS	4373353	4374969	.	-	0	ID=cds3985;Parent=gene4050;Dbxref=EnsemblGenomes-Gn:azo3989,EnsemblGenomes-Tr:CAL96605,GOA:A1KCP9,InterPro:IPR001708,InterPro:IPR019998,InterPro:IPR028053,InterPro:IPR028055,UniProtKB/TrEMBL:A1KCP9,NCBI_GP:CAL96605.1;Name=CAL96605.1;Note=Inner membrane protein oxaA. Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and independently of the Sec translocase complex (by similariety). Pfam: 60 kd inner membran proetin TMHs: 3 Signal peptide: no%3B~High confidence in function and specificity;gbkey=CDS;product=propable 60 Kd inner-membrane protein;protein_id=CAL96605.1;transl_table=11
AM406670.1	EMBL	gene	4375023	4375232	.	-	.	ID=gene4051;Name=azo3990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3990
AM406670.1	EMBL	CDS	4375023	4375232	.	-	0	ID=cds3986;Parent=gene4051;Dbxref=EnsemblGenomes-Gn:azo3990,EnsemblGenomes-Tr:CAL96606,GOA:A1KCQ0,InterPro:IPR002696,NCBI_GP:CAL96606.1;Name=CAL96606.1;Note=Conserved hypothetical protein%2C 62%25 identical(76%25 similar) to SwissProt%3BQ7NPT7. Has PF01809%2C Domain of unknown function DUF37%3BIPR002696%3BThis domain is found in short (70 amino acid) hypothetical proteins from various bacteria. The domain contains three conserved cysteine residues. Q44066 from Aeromonas hydrophila has been found to have hemolytic activity (unpublished).;gbkey=CDS;product=conserved hypothetical protein;protein_id=CAL96606.1;transl_table=11
AM406670.1	EMBL	gene	4375229	4375591	.	-	.	ID=gene4052;Name=azo3991;gbkey=Gene;gene_biotype=protein_coding;locus_tag=azo3991
AM406670.1	EMBL	CDS	4375229	4375591	.	-	0	ID=cds3987;Parent=gene4052;Dbxref=EnsemblGenomes-Gn:azo3991,EnsemblGenomes-Tr:CAL96607,GOA:A1KCQ1,InterPro:IPR000100,InterPro:IPR014721,InterPro:IPR020539,InterPro:IPR020568,NCBI_GP:CAL96607.1;Name=CAL96607.1;Note=Region start changed from 4375477 to 4375591 (114 bases);gbkey=CDS;product=ribonuclease P;protein_id=CAL96607.1;transl_table=11
AM406670.1	EMBL	gene	4375593	4375931	.	-	.	ID=gene4053;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=azo3992
AM406670.1	EMBL	CDS	4375593	4375931	.	-	0	ID=cds3988;Parent=gene4053;Dbxref=EnsemblGenomes-Gn:azo3992,EnsemblGenomes-Tr:CAL96608,GOA:A1KCQ2,InterPro:IPR000271,InterPro:IPR020939,UniProtKB/TrEMBL:A1KCQ2,NCBI_GP:CAL96608.1;Name=CAL96608.1;Note=Putative Ribosomal protein L34. Has PF00468%2CRibosomal protein L34%3BIPR000271%2C Ribosomal_L34%3BRibosomes are the particles that catalyze mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain%2C situated in the P site as peptidyl-tRNA%2C is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA%2C extended by one residue%2C is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites.%3B~Function unclear;gbkey=CDS;gene=rpmH;product=putative Ribosomal protein L34;protein_id=CAL96608.1;transl_table=11
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