locus-tag class description CJ010_00005 PF11638 DnaA N-terminal domain CJ010_00005 PF00308 Bacterial dnaA protein CJ010_00005 PF08299 Bacterial dnaA protein helix-turn-helix CJ010_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CJ010_00010 PF02767 DNA polymerase III beta subunit, central domain CJ010_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CJ010_00015 PF01751 Toprim domain CJ010_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_00015 PF18053 DNA gyrase B subunit insert domain CJ010_00015 PF00986 DNA gyrase B subunit, carboxyl terminus CJ010_00015 PF00204 DNA gyrase B CJ010_00020 PF02384 N-6 DNA Methylase CJ010_00025 PF01420 Type I restriction modification DNA specificity domain CJ010_00030 PF13784 Fic/DOC family N-terminal CJ010_00030 PF02661 Fic/DOC family CJ010_00045 PF12008 Type I restriction and modification enzyme - subunit R C terminal CJ010_00045 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CJ010_00045 PF18766 SWI2/SNF2 ATPase CJ010_00050 PF00849 RNA pseudouridylate synthase CJ010_00055 PF00258 Flavodoxin CJ010_00075 PF01965 DJ-1/PfpI family CJ010_00085 PF03466 LysR substrate binding domain CJ010_00085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_00090 PF01799 [2Fe-2S] binding domain CJ010_00090 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_00095 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJ010_00100 PF02625 XdhC and CoxI family CJ010_00100 PF13478 XdhC Rossmann domain CJ010_00110 PF01613 Flavin reductase like domain CJ010_00120 PF03741 Integral membrane protein TerC family CJ010_00125 PF03466 LysR substrate binding domain CJ010_00125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_00130 PF06779 Uncharacterised MFS-type transporter YbfB CJ010_00150 PF07044 Protein of unknown function (DUF1329) CJ010_00175 PF02311 AraC-like ligand binding domain CJ010_00175 PF12833 Helix-turn-helix domain CJ010_00190 PF01425 Amidase CJ010_00200 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJ010_00215 PF07286 Protein of unknown function (DUF1445) CJ010_00220 PF03466 LysR substrate binding domain CJ010_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_00225 PF03746 LamB/YcsF family CJ010_00230 PF02626 Carboxyltransferase domain, subdomain A and B CJ010_00235 PF02682 Carboxyltransferase domain, subdomain C and D CJ010_00245 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_00255 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJ010_00260 PF00561 alpha/beta hydrolase fold CJ010_00265 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) CJ010_00270 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) CJ010_00275 PF08486 Stage II sporulation protein CJ010_00275 PF10062 Predicted secreted protein (DUF2300) CJ010_00290 PF00512 His Kinase A (phospho-acceptor) domain CJ010_00290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_00290 PF00672 HAMP domain CJ010_00295 PF00486 Transcriptional regulatory protein, C terminal CJ010_00295 PF00072 Response regulator receiver domain CJ010_00300 PF00005 ABC transporter CJ010_00305 PF12704 MacB-like periplasmic core domain CJ010_00305 PF02687 FtsX-like permease family CJ010_00320 PF00392 Bacterial regulatory proteins, gntR family CJ010_00320 PF00155 Aminotransferase class I and II CJ010_00335 PF04321 RmlD substrate binding domain CJ010_00350 PF07703 Alpha-2-macroglobulin bait region domain CJ010_00350 PF00207 Alpha-2-macroglobulin family CJ010_00350 PF01835 MG2 domain CJ010_00355 PF06672 Protein of unknown function (DUF1175) CJ010_00360 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) CJ010_00375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_00375 PF00072 Response regulator receiver domain CJ010_00375 PF13188 PAS domain CJ010_00375 PF08448 PAS fold CJ010_00375 PF00512 His Kinase A (phospho-acceptor) domain CJ010_00380 PF01594 AI-2E family transporter CJ010_00390 PF00378 Enoyl-CoA hydratase/isomerase CJ010_00420 PF03144 Elongation factor Tu domain 2 CJ010_00420 PF00009 Elongation factor Tu GTP binding domain CJ010_00420 PF16658 Class II release factor RF3, C-terminal domain CJ010_00435 PF04381 Putative exonuclease, RdgC CJ010_00445 PF01479 S4 domain CJ010_00445 PF00849 RNA pseudouridylate synthase CJ010_00455 PF08207 Elongation factor P (EF-P) KOW-like domain CJ010_00455 PF01132 Elongation factor P (EF-P) OB domain CJ010_00455 PF09285 Elongation factor P, C-terminal CJ010_00465 PF00005 ABC transporter CJ010_00465 PF17755 UvrA DNA-binding domain CJ010_00465 PF17760 UvrA interaction domain CJ010_00475 PF01322 Cytochrome C' CJ010_00480 PF12729 Four helix bundle sensory module for signal transduction CJ010_00480 PF00672 HAMP domain CJ010_00480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_00485 PF13180 PDZ domain CJ010_00490 PF00593 TonB dependent receptor CJ010_00490 PF07715 TonB-dependent Receptor Plug Domain CJ010_00495 PF03466 LysR substrate binding domain CJ010_00495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_00500 PF01751 Toprim domain CJ010_00500 PF01131 DNA topoisomerase CJ010_00505 PF04361 Protein of unknown function (DUF494) CJ010_00510 PF02481 DNA recombination-mediator protein A CJ010_00510 PF17782 DprA winged helix domain CJ010_00520 PF01327 Polypeptide deformylase CJ010_00525 PF02911 Formyl transferase, C-terminal domain CJ010_00525 PF00551 Formyl transferase CJ010_00530 PF01435 Peptidase family M48 CJ010_00535 PF00578 AhpC/TSA family CJ010_00540 PF01841 Transglutaminase-like superfamily CJ010_00550 PF08534 Redoxin CJ010_00570 PF02580 D-Tyr-tRNA(Tyr) deacylase CJ010_00575 PF05726 Pirin C-terminal cupin domain CJ010_00575 PF02678 Pirin CJ010_00580 PF08240 Alcohol dehydrogenase GroES-like domain CJ010_00585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_00585 PF03466 LysR substrate binding domain CJ010_00590 PF02798 Glutathione S-transferase, N-terminal domain CJ010_00600 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CJ010_00600 PF01048 Phosphorylase superfamily CJ010_00665 PF13401 AAA domain CJ010_00665 PF01471 Putative peptidoglycan binding domain CJ010_00720 PF01510 N-acetylmuramoyl-L-alanine amidase CJ010_00765 PF03237 Terminase-like family CJ010_00895 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_00895 PF00005 ABC transporter CJ010_00900 PF00005 ABC transporter CJ010_00910 PF02653 Branched-chain amino acid transport system / permease component CJ010_00920 PF04055 Radical SAM superfamily CJ010_00935 PF03466 LysR substrate binding domain CJ010_00935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_00940 PF08240 Alcohol dehydrogenase GroES-like domain CJ010_00940 PF00107 Zinc-binding dehydrogenase CJ010_00950 PF03466 LysR substrate binding domain CJ010_00950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_00955 PF01063 Amino-transferase class IV CJ010_00965 PF00990 Diguanylate cyclase, GGDEF domain CJ010_00975 PF08448 PAS fold CJ010_00975 PF13188 PAS domain CJ010_00975 PF00512 His Kinase A (phospho-acceptor) domain CJ010_00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_00975 PF00072 Response regulator receiver domain CJ010_00980 PF13458 Periplasmic binding protein CJ010_00985 PF00781 Diacylglycerol kinase catalytic domain CJ010_01000 PF10442 FIST C domain CJ010_01000 PF08495 FIST N domain CJ010_01005 PF01134 Glucose inhibited division protein A CJ010_01005 PF13932 GidA associated domain CJ010_01010 PF02527 rRNA small subunit methyltransferase G CJ010_01015 PF13614 AAA domain CJ010_01020 PF17762 HTH domain found in ParB protein CJ010_01020 PF02195 ParB-like nuclease domain CJ010_01030 PF07690 Major Facilitator Superfamily CJ010_01040 PF01553 Acyltransferase CJ010_01040 PF00501 AMP-binding enzyme CJ010_01045 PF01022 Bacterial regulatory protein, arsR family CJ010_01055 PF00119 ATP synthase A chain CJ010_01060 PF00137 ATP synthase subunit C CJ010_01065 PF00430 ATP synthase B/B' CF(0) CJ010_01070 PF00213 ATP synthase delta (OSCP) subunit CJ010_01075 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJ010_01075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJ010_01075 PF00306 ATP synthase alpha/beta chain, C terminal domain CJ010_01080 PF00231 ATP synthase CJ010_01085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJ010_01085 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJ010_01090 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CJ010_01090 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CJ010_01105 PF01209 ubiE/COQ5 methyltransferase family CJ010_01115 PF00072 Response regulator receiver domain CJ010_01115 PF00486 Transcriptional regulatory protein, C terminal CJ010_01120 PF11808 Phosphate regulon sensor protein PhoR CJ010_01120 PF00512 His Kinase A (phospho-acceptor) domain CJ010_01120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_01120 PF00989 PAS fold CJ010_01135 PF13230 Glutamine amidotransferases class-II CJ010_01145 PF02934 GatB/GatE catalytic domain CJ010_01145 PF02637 GatB domain CJ010_01155 PF01425 Amidase CJ010_01160 PF02686 Glu-tRNAGln amidotransferase C subunit CJ010_01180 PF00905 Penicillin binding protein transpeptidase domain CJ010_01180 PF03717 Penicillin-binding Protein dimerisation domain CJ010_01185 PF01098 Cell cycle protein CJ010_01190 PF05036 Sporulation related domain CJ010_01190 PF03330 Lytic transglycolase CJ010_01195 PF07943 Penicillin-binding protein 5, C-terminal domain CJ010_01195 PF00768 D-alanyl-D-alanine carboxypeptidase CJ010_01200 PF01063 Amino-transferase class IV CJ010_01205 PF04359 Protein of unknown function (DUF493) CJ010_01210 PF03099 Biotin/lipoate A/B protein ligase family CJ010_01215 PF04055 Radical SAM superfamily CJ010_01215 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CJ010_01220 PF05163 DinB family CJ010_01230 PF13361 UvrD-like helicase C-terminal domain CJ010_01230 PF00580 UvrD/REP helicase N-terminal domain CJ010_01235 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_01270 PF00106 short chain dehydrogenase CJ010_01290 PF00085 Thioredoxin CJ010_01315 PF00117 Glutamine amidotransferase class-I CJ010_01315 PF04715 Anthranilate synthase component I, N terminal region CJ010_01315 PF00425 chorismate binding enzyme CJ010_01320 PF00149 Calcineurin-like phosphoesterase CJ010_01320 PF12320 Type 5 capsule protein repressor C-terminal domain CJ010_01325 PF13476 AAA domain CJ010_01340 PF02608 ABC transporter substrate-binding protein PnrA-like CJ010_01345 PF01546 Peptidase family M20/M25/M40 CJ010_01345 PF07687 Peptidase dimerisation domain CJ010_01350 PF12833 Helix-turn-helix domain CJ010_01350 PF02311 AraC-like ligand binding domain CJ010_01365 PF01266 FAD dependent oxidoreductase CJ010_01370 PF04324 BFD-like [2Fe-2S] binding domain CJ010_01370 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_01380 PF01037 Lrp/AsnC ligand binding domain CJ010_01385 PF00202 Aminotransferase class-III CJ010_01395 PF00171 Aldehyde dehydrogenase family CJ010_01405 PF01266 FAD dependent oxidoreductase CJ010_01410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJ010_01415 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_01420 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_01425 PF00005 ABC transporter CJ010_01425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJ010_01430 PF00171 Aldehyde dehydrogenase family CJ010_01455 PF00873 AcrB/AcrD/AcrF family CJ010_01465 PF07715 TonB-dependent Receptor Plug Domain CJ010_01465 PF00593 TonB dependent receptor CJ010_01480 PF01618 MotA/TolQ/ExbB proton channel family CJ010_01485 PF02472 Biopolymer transport protein ExbD/TolR CJ010_01490 PF02472 Biopolymer transport protein ExbD/TolR CJ010_01500 PF00962 Adenosine/AMP deaminase CJ010_01530 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJ010_01540 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_01545 PF13404 AsnC-type helix-turn-helix domain CJ010_01545 PF01037 Lrp/AsnC ligand binding domain CJ010_01550 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_01560 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJ010_01565 PF00440 Bacterial regulatory proteins, tetR family CJ010_01565 PF13977 BetI-type transcriptional repressor, C-terminal CJ010_01570 PF00529 HlyD membrane-fusion protein of T1SS CJ010_01570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ010_01575 PF00873 AcrB/AcrD/AcrF family CJ010_01580 PF02321 Outer membrane efflux protein CJ010_01585 PF00210 Ferritin-like domain CJ010_01590 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJ010_01595 PF00970 Oxidoreductase FAD-binding domain CJ010_01595 PF00175 Oxidoreductase NAD-binding domain CJ010_01595 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_01605 PF12631 MnmE helical domain CJ010_01605 PF01926 50S ribosome-binding GTPase CJ010_01605 PF10396 GTP-binding protein TrmE N-terminus CJ010_01615 PF01522 Polysaccharide deacetylase CJ010_01615 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain CJ010_01655 PF08521 Two-component sensor kinase N-terminal CJ010_01655 PF00512 His Kinase A (phospho-acceptor) domain CJ010_01655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_01660 PF00486 Transcriptional regulatory protein, C terminal CJ010_01660 PF00072 Response regulator receiver domain CJ010_01680 PF00873 AcrB/AcrD/AcrF family CJ010_01715 PF02310 B12 binding domain CJ010_01715 PF04055 Radical SAM superfamily CJ010_01745 PF00145 C-5 cytosine-specific DNA methylase CJ010_01750 PF03852 DNA mismatch endonuclease Vsr CJ010_01770 PF13488 Glycine zipper CJ010_01770 PF00691 OmpA family CJ010_01785 PF08990 Erythronolide synthase docking CJ010_01785 PF00698 Acyl transferase domain CJ010_01785 PF02801 Beta-ketoacyl synthase, C-terminal domain CJ010_01785 PF00550 Phosphopantetheine attachment site CJ010_01785 PF16197 Ketoacyl-synthetase C-terminal extension CJ010_01785 PF00109 Beta-ketoacyl synthase, N-terminal domain CJ010_01785 PF08659 KR domain CJ010_01800 PF01850 PIN domain CJ010_01805 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CJ010_01815 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CJ010_01820 PF07690 Major Facilitator Superfamily CJ010_01825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_01825 PF03466 LysR substrate binding domain CJ010_01835 PF00005 ABC transporter CJ010_01860 PF00144 Beta-lactamase CJ010_01870 PF00753 Metallo-beta-lactamase superfamily CJ010_01870 PF10996 Beta-Casp domain CJ010_01870 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CJ010_01880 PF00132 Bacterial transferase hexapeptide (six repeats) CJ010_01885 PF00171 Aldehyde dehydrogenase family CJ010_01890 PF00378 Enoyl-CoA hydratase/isomerase CJ010_01895 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJ010_01895 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJ010_01895 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CJ010_01900 PF03061 Thioesterase superfamily CJ010_01910 PF05138 Phenylacetic acid catabolic protein CJ010_01915 PF06243 Phenylacetic acid degradation B CJ010_01920 PF05138 Phenylacetic acid catabolic protein CJ010_01925 PF01883 Iron-sulfur cluster assembly protein CJ010_01930 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_01930 PF00175 Oxidoreductase NAD-binding domain CJ010_01930 PF00970 Oxidoreductase FAD-binding domain CJ010_01940 PF02803 Thiolase, C-terminal domain CJ010_01940 PF00108 Thiolase, N-terminal domain CJ010_01945 PF13458 Periplasmic binding protein CJ010_01955 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_01955 PF00005 ABC transporter CJ010_01960 PF00005 ABC transporter CJ010_01965 PF00216 Bacterial DNA-binding protein CJ010_01970 PF00270 DEAD/DEAH box helicase CJ010_01970 PF00271 Helicase conserved C-terminal domain CJ010_01975 PF01029 NusB family CJ010_01980 PF00885 6,7-dimethyl-8-ribityllumazine synthase CJ010_01985 PF00925 GTP cyclohydrolase II CJ010_01985 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CJ010_01990 PF00677 Lumazine binding domain CJ010_01995 PF02683 Cytochrome C biogenesis protein transmembrane region CJ010_01995 PF11412 Disulphide bond corrector protein DsbC CJ010_02000 PF03091 CutA1 divalent ion tolerance protein CJ010_02005 PF03060 Nitronate monooxygenase CJ010_02015 PF00990 Diguanylate cyclase, GGDEF domain CJ010_02015 PF07694 5TMR of 5TMR-LYT CJ010_02020 PF09350 Domain of unknown function (DUF1992) CJ010_02050 PF00795 Carbon-nitrogen hydrolase CJ010_02055 PF01546 Peptidase family M20/M25/M40 CJ010_02055 PF07687 Peptidase dimerisation domain CJ010_02060 PF00291 Pyridoxal-phosphate dependent enzyme CJ010_02065 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_02070 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJ010_02080 PF01047 MarR family CJ010_02085 PF02566 OsmC-like protein CJ010_02090 PF00892 EamA-like transporter family CJ010_02095 PF00175 Oxidoreductase NAD-binding domain CJ010_02095 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_02095 PF00970 Oxidoreductase FAD-binding domain CJ010_02120 PF00440 Bacterial regulatory proteins, tetR family CJ010_02145 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CJ010_02145 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CJ010_02155 PF03466 LysR substrate binding domain CJ010_02155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_02165 PF03466 LysR substrate binding domain CJ010_02165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_02175 PF12849 PBP superfamily domain CJ010_02190 PF00360 Phytochrome region CJ010_02190 PF00563 EAL domain CJ010_02190 PF00990 Diguanylate cyclase, GGDEF domain CJ010_02190 PF01590 GAF domain CJ010_02195 PF01322 Cytochrome C' CJ010_02200 PF00797 N-acetyltransferase CJ010_02205 PF13614 AAA domain CJ010_02215 PF00580 UvrD/REP helicase N-terminal domain CJ010_02215 PF13361 UvrD-like helicase C-terminal domain CJ010_02220 PF00999 Sodium/hydrogen exchanger family CJ010_02235 PF01061 ABC-2 type transporter CJ010_02260 PF09704 CRISPR-associated protein (Cas_Cas5) CJ010_02280 PF01867 CRISPR associated protein Cas1 CJ010_02285 PF09827 CRISPR associated protein Cas2 CJ010_02295 PF00043 Glutathione S-transferase, C-terminal domain CJ010_02295 PF13417 Glutathione S-transferase, N-terminal domain CJ010_02315 PF12833 Helix-turn-helix domain CJ010_02315 PF14525 AraC-binding-like domain CJ010_02320 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CJ010_02320 PF00355 Rieske [2Fe-2S] domain CJ010_02325 PF00866 Ring hydroxylating beta subunit CJ010_02330 PF00355 Rieske [2Fe-2S] domain CJ010_02340 PF02653 Branched-chain amino acid transport system / permease component CJ010_02350 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_02350 PF00005 ABC transporter CJ010_02355 PF00005 ABC transporter CJ010_02360 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_02360 PF00175 Oxidoreductase NAD-binding domain CJ010_02360 PF00970 Oxidoreductase FAD-binding domain CJ010_02365 PF01169 Uncharacterized protein family UPF0016 CJ010_02370 PF13977 BetI-type transcriptional repressor, C-terminal CJ010_02370 PF00440 Bacterial regulatory proteins, tetR family CJ010_02375 PF14497 Glutathione S-transferase, C-terminal domain CJ010_02375 PF13417 Glutathione S-transferase, N-terminal domain CJ010_02380 PF00501 AMP-binding enzyme CJ010_02380 PF13193 AMP-binding enzyme C-terminal domain CJ010_02390 PF13458 Periplasmic binding protein CJ010_02395 PF01613 Flavin reductase like domain CJ010_02405 PF00561 alpha/beta hydrolase fold CJ010_02435 PF00202 Aminotransferase class-III CJ010_02440 PF03109 ABC1 family CJ010_02445 PF07715 TonB-dependent Receptor Plug Domain CJ010_02445 PF00593 TonB dependent receptor CJ010_02455 PF03485 Arginyl tRNA synthetase N terminal domain CJ010_02455 PF05746 DALR anticodon binding domain CJ010_02455 PF00750 tRNA synthetases class I (R) CJ010_02465 PF01323 DSBA-like thioredoxin domain CJ010_02470 PF00106 short chain dehydrogenase CJ010_02480 PF00082 Subtilase family CJ010_02490 PF07963 Prokaryotic N-terminal methylation motif CJ010_02490 PF08334 Type II secretion system (T2SS), protein G CJ010_02495 PF00482 Type II secretion system (T2SS), protein F CJ010_02500 PF00437 Type II/IV secretion system protein CJ010_02525 PF03958 Bacterial type II/III secretion system short domain CJ010_02525 PF07660 Secretin and TonB N terminus short domain CJ010_02525 PF11741 AMIN domain CJ010_02525 PF00263 Bacterial type II and III secretion system protein CJ010_02530 PF08334 Type II secretion system (T2SS), protein G CJ010_02530 PF07963 Prokaryotic N-terminal methylation motif CJ010_02535 PF08334 Type II secretion system (T2SS), protein G CJ010_02535 PF07963 Prokaryotic N-terminal methylation motif CJ010_02555 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CJ010_02555 PF00561 alpha/beta hydrolase fold CJ010_02560 PF16123 Hydroxyacylglutathione hydrolase C-terminus CJ010_02560 PF00753 Metallo-beta-lactamase superfamily CJ010_02565 PF13411 MerR HTH family regulatory protein CJ010_02575 PF00108 Thiolase, N-terminal domain CJ010_02575 PF02803 Thiolase, C-terminal domain CJ010_02580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJ010_02580 PF02770 Acyl-CoA dehydrogenase, middle domain CJ010_02580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJ010_02605 PF03668 P-loop ATPase protein family CJ010_02620 PF00072 Response regulator receiver domain CJ010_02620 PF01339 CheB methylesterase CJ010_02625 PF01739 CheR methyltransferase, SAM binding domain CJ010_02625 PF03705 CheR methyltransferase, all-alpha domain CJ010_02630 PF03975 CheD chemotactic sensory transduction CJ010_02635 PF02203 Tar ligand binding domain homologue CJ010_02635 PF00672 HAMP domain CJ010_02635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_02640 PF01584 CheW-like domain CJ010_02645 PF00672 HAMP domain CJ010_02645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_02645 PF17200 Single Cache domain 2 CJ010_02650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_02650 PF00672 HAMP domain CJ010_02650 PF02203 Tar ligand binding domain homologue CJ010_02655 PF02895 Signal transducing histidine kinase, homodimeric domain CJ010_02655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_02655 PF01627 Hpt domain CJ010_02655 PF07194 P2 response regulator binding domain CJ010_02655 PF01584 CheW-like domain CJ010_02665 PF00672 HAMP domain CJ010_02665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_02675 PF01738 Dienelactone hydrolase family CJ010_02685 PF01176 Translation initiation factor 1A / IF-1 CJ010_02715 PF01593 Flavin containing amine oxidoreductase CJ010_02720 PF01370 NAD dependent epimerase/dehydratase family CJ010_02725 PF00106 short chain dehydrogenase CJ010_02730 PF04030 D-arabinono-1,4-lactone oxidase CJ010_02730 PF01565 FAD binding domain CJ010_02755 PF01548 Transposase CJ010_02755 PF02371 Transposase IS116/IS110/IS902 family CJ010_02780 PF06508 Queuosine biosynthesis protein QueC CJ010_02785 PF04055 Radical SAM superfamily CJ010_02795 PF00691 OmpA family CJ010_02800 PF04052 TolB amino-terminal domain CJ010_02800 PF07676 WD40-like Beta Propeller Repeat CJ010_02810 PF02472 Biopolymer transport protein ExbD/TolR CJ010_02815 PF01618 MotA/TolQ/ExbB proton channel family CJ010_02820 PF03061 Thioesterase superfamily CJ010_02830 PF00227 Proteasome subunit CJ010_02835 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_02835 PF07724 AAA domain (Cdc48 subfamily) CJ010_02850 PF00563 EAL domain CJ010_02850 PF03707 Bacterial signalling protein N terminal repeat CJ010_02850 PF00990 Diguanylate cyclase, GGDEF domain CJ010_02855 PF01145 SPFH domain / Band 7 family CJ010_02855 PF16200 C-terminal region of band_7 CJ010_02865 PF01479 S4 domain CJ010_02870 PF00009 Elongation factor Tu GTP binding domain CJ010_02875 PF01507 Phosphoadenosine phosphosulfate reductase family CJ010_02880 PF01507 Phosphoadenosine phosphosulfate reductase family CJ010_02895 PF01925 Sulfite exporter TauE/SafE CJ010_02900 PF03466 LysR substrate binding domain CJ010_02900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_02905 PF17763 Glutaminase/Asparaginase C-terminal domain CJ010_02905 PF00710 Asparaginase, N-terminal CJ010_02910 PF10415 Fumarase C C-terminus CJ010_02910 PF00206 Lyase CJ010_02915 PF17763 Glutaminase/Asparaginase C-terminal domain CJ010_02915 PF00710 Asparaginase, N-terminal CJ010_02920 PF00005 ABC transporter CJ010_02925 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_02930 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_02935 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ010_02940 PF00158 Sigma-54 interaction domain CJ010_02940 PF00072 Response regulator receiver domain CJ010_02940 PF02954 Bacterial regulatory protein, Fis family CJ010_02945 PF02743 Cache domain CJ010_02945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_02945 PF00512 His Kinase A (phospho-acceptor) domain CJ010_02950 PF00999 Sodium/hydrogen exchanger family CJ010_02950 PF02254 TrkA-N domain CJ010_02955 PF00563 EAL domain CJ010_02955 PF03707 Bacterial signalling protein N terminal repeat CJ010_02955 PF00990 Diguanylate cyclase, GGDEF domain CJ010_02960 PF00664 ABC transporter transmembrane region CJ010_02960 PF00005 ABC transporter CJ010_02965 PF01810 LysE type translocator CJ010_02970 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJ010_02970 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJ010_02975 PF00990 Diguanylate cyclase, GGDEF domain CJ010_02975 PF00563 EAL domain CJ010_02975 PF03707 Bacterial signalling protein N terminal repeat CJ010_02980 PF00156 Phosphoribosyl transferase domain CJ010_02985 PF00156 Phosphoribosyl transferase domain CJ010_02985 PF01738 Dienelactone hydrolase family CJ010_02990 PF00909 Ammonium Transporter Family CJ010_02995 PF08447 PAS fold CJ010_03000 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJ010_03000 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJ010_03010 PF13193 AMP-binding enzyme C-terminal domain CJ010_03010 PF00501 AMP-binding enzyme CJ010_03015 PF01144 Coenzyme A transferase CJ010_03020 PF01144 Coenzyme A transferase CJ010_03025 PF00158 Sigma-54 interaction domain CJ010_03025 PF02954 Bacterial regulatory protein, Fis family CJ010_03025 PF01590 GAF domain CJ010_03030 PF01968 Hydantoinase/oxoprolinase CJ010_03030 PF05378 Hydantoinase/oxoprolinase N-terminal region CJ010_03035 PF08882 Acetone carboxylase gamma subunit CJ010_03040 PF01968 Hydantoinase/oxoprolinase CJ010_03040 PF05378 Hydantoinase/oxoprolinase N-terminal region CJ010_03055 PF00107 Zinc-binding dehydrogenase CJ010_03055 PF08240 Alcohol dehydrogenase GroES-like domain CJ010_03065 PF03176 MMPL family CJ010_03085 PF02472 Biopolymer transport protein ExbD/TolR CJ010_03090 PF01618 MotA/TolQ/ExbB proton channel family CJ010_03105 PF00639 PPIC-type PPIASE domain CJ010_03105 PF09312 SurA N-terminal domain CJ010_03115 PF00437 Type II/IV secretion system protein CJ010_03115 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CJ010_03120 PF00482 Type II secretion system (T2SS), protein F CJ010_03125 PF07963 Prokaryotic N-terminal methylation motif CJ010_03125 PF08334 Type II secretion system (T2SS), protein G CJ010_03130 PF12019 Type II transport protein GspH CJ010_03135 PF07963 Prokaryotic N-terminal methylation motif CJ010_03135 PF02501 Type II secretion system (T2SS), protein I CJ010_03165 PF00263 Bacterial type II and III secretion system protein CJ010_03165 PF03958 Bacterial type II/III secretion system short domain CJ010_03185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJ010_03185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJ010_03185 PF09317 Domain of unknown function (DUF1974) CJ010_03190 PF00108 Thiolase, N-terminal domain CJ010_03190 PF02803 Thiolase, C-terminal domain CJ010_03195 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJ010_03195 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJ010_03195 PF00378 Enoyl-CoA hydratase/isomerase CJ010_03200 PF03061 Thioesterase superfamily CJ010_03205 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CJ010_03210 PF00378 Enoyl-CoA hydratase/isomerase CJ010_03210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJ010_03210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJ010_03215 PF02803 Thiolase, C-terminal domain CJ010_03215 PF00108 Thiolase, N-terminal domain CJ010_03220 PF00378 Enoyl-CoA hydratase/isomerase CJ010_03230 PF01053 Cys/Met metabolism PLP-dependent enzyme CJ010_03245 PF02623 FliW protein CJ010_03250 PF01042 Endoribonuclease L-PSP CJ010_03255 PF17191 RecG wedge domain CJ010_03255 PF00271 Helicase conserved C-terminal domain CJ010_03255 PF00270 DEAD/DEAH box helicase CJ010_03260 PF04345 Chorismate lyase CJ010_03265 PF01040 UbiA prenyltransferase family CJ010_03275 PF01042 Endoribonuclease L-PSP CJ010_03280 PF09335 SNARE associated Golgi protein CJ010_03285 PF07769 psiF repeat CJ010_03295 PF01171 PP-loop family CJ010_03320 PF00561 alpha/beta hydrolase fold CJ010_03325 PF00043 Glutathione S-transferase, C-terminal domain CJ010_03325 PF02798 Glutathione S-transferase, N-terminal domain CJ010_03335 PF12627 Probable RNA and SrmB- binding site of polymerase A CJ010_03335 PF01743 Poly A polymerase head domain CJ010_03335 PF01966 HD domain CJ010_03345 PF01370 NAD dependent epimerase/dehydratase family CJ010_03350 PF01464 Transglycosylase SLT domain CJ010_03350 PF14718 Soluble lytic murein transglycosylase L domain CJ010_03355 PF01812 5-formyltetrahydrofolate cyclo-ligase family CJ010_03360 PF08448 PAS fold CJ010_03360 PF00990 Diguanylate cyclase, GGDEF domain CJ010_03365 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ010_03370 PF00291 Pyridoxal-phosphate dependent enzyme CJ010_03370 PF00585 C-terminal regulatory domain of Threonine dehydratase CJ010_03375 PF02603 HPr Serine kinase N terminus CJ010_03375 PF07475 HPr Serine kinase C-terminal domain CJ010_03380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJ010_03385 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CJ010_03390 PF04963 Sigma-54 factor, core binding domain CJ010_03390 PF00309 Sigma-54 factor, Activator interacting domain (AID) CJ010_03390 PF04552 Sigma-54, DNA binding domain CJ010_03395 PF00005 ABC transporter CJ010_03400 PF02631 RecX family CJ010_03405 PF00154 recA bacterial DNA recombination protein CJ010_03410 PF02464 Competence-damaged protein CJ010_03415 PF04608 Phosphatidylglycerophosphatase A CJ010_03420 PF02769 AIR synthase related protein, C-terminal domain CJ010_03420 PF00586 AIR synthase related protein, N-terminal domain CJ010_03425 PF03658 RnfH family Ubiquitin CJ010_03430 PF02508 Rnf-Nqr subunit, membrane protein CJ010_03435 PF04205 FMN-binding domain CJ010_03440 PF03116 NQR2, RnfD, RnfE family CJ010_03445 PF10531 SLBB domain CJ010_03445 PF13375 RnfC Barrel sandwich hybrid domain CJ010_03445 PF13237 4Fe-4S dicluster domain CJ010_03445 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CJ010_03450 PF04060 Putative Fe-S cluster CJ010_03455 PF02508 Rnf-Nqr subunit, membrane protein CJ010_03460 PF00989 PAS fold CJ010_03460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_03465 PF13185 GAF domain CJ010_03465 PF02954 Bacterial regulatory protein, Fis family CJ010_03465 PF00158 Sigma-54 interaction domain CJ010_03480 PF00080 Copper/zinc superoxide dismutase (SODC) CJ010_03485 PF04055 Radical SAM superfamily CJ010_03485 PF02579 Dinitrogenase iron-molybdenum cofactor CJ010_03490 PF00037 4Fe-4S binding domain CJ010_03495 PF03960 ArsC family CJ010_03500 PF00258 Flavodoxin CJ010_03500 PF00753 Metallo-beta-lactamase superfamily CJ010_03505 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_03510 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_03515 PF04891 NifQ CJ010_03520 PF03747 ADP-ribosylglycohydrolase CJ010_03525 PF09997 Predicted membrane protein (DUF2238) CJ010_03550 PF00690 Cation transporter/ATPase, N-terminus CJ010_03550 PF00689 Cation transporting ATPase, C-terminus CJ010_03555 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) CJ010_03560 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CJ010_03565 PF00148 Nitrogenase component 1 type Oxidoreductase CJ010_03570 PF11844 Domain of unknown function (DUF3364) CJ010_03570 PF00148 Nitrogenase component 1 type Oxidoreductase CJ010_03575 PF06988 NifT/FixU protein CJ010_03575 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJ010_03580 PF00037 4Fe-4S binding domain CJ010_03585 PF02579 Dinitrogenase iron-molybdenum cofactor CJ010_03585 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal CJ010_03595 PF00672 HAMP domain CJ010_03595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_03595 PF17200 Single Cache domain 2 CJ010_03600 PF00639 PPIC-type PPIASE domain CJ010_03605 PF04319 NifZ domain CJ010_03610 PF03206 Nitrogen fixation protein NifW CJ010_03620 PF00132 Bacterial transferase hexapeptide (six repeats) CJ010_03625 PF00682 HMGL-like CJ010_03630 PF00266 Aminotransferase class-V CJ010_03635 PF01106 NifU-like domain CJ010_03635 PF04324 BFD-like [2Fe-2S] binding domain CJ010_03635 PF01592 NifU-like N terminal domain CJ010_03640 PF01521 Iron-sulphur cluster biosynthesis CJ010_03650 PF12838 4Fe-4S dicluster domain CJ010_03660 PF03270 Protein of unknown function, DUF269 CJ010_03670 PF02579 Dinitrogenase iron-molybdenum cofactor CJ010_03675 PF00148 Nitrogenase component 1 type Oxidoreductase CJ010_03680 PF00148 Nitrogenase component 1 type Oxidoreductase CJ010_03695 PF00563 EAL domain CJ010_03695 PF03707 Bacterial signalling protein N terminal repeat CJ010_03695 PF00990 Diguanylate cyclase, GGDEF domain CJ010_03710 PF04972 BON domain CJ010_03725 PF17200 Single Cache domain 2 CJ010_03725 PF07730 Histidine kinase CJ010_03730 PF01339 CheB methylesterase CJ010_03730 PF00072 Response regulator receiver domain CJ010_03735 PF00196 Bacterial regulatory proteins, luxR family CJ010_03735 PF00072 Response regulator receiver domain CJ010_03745 PF02075 Crossover junction endodeoxyribonuclease RuvC CJ010_03750 PF01906 Putative heavy-metal-binding CJ010_03760 PF01709 Transcriptional regulator CJ010_03770 PF05872 Bacterial protein of unknown function (DUF853) CJ010_03775 PF03466 LysR substrate binding domain CJ010_03775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_03780 PF07690 Major Facilitator Superfamily CJ010_03785 PF00892 EamA-like transporter family CJ010_03790 PF07690 Major Facilitator Superfamily CJ010_03795 PF02219 Methylenetetrahydrofolate reductase CJ010_03800 PF01728 FtsJ-like methyltransferase CJ010_03800 PF01479 S4 domain CJ010_03805 PF05221 S-adenosyl-L-homocysteine hydrolase CJ010_03805 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CJ010_03815 PF02772 S-adenosylmethionine synthetase, central domain CJ010_03815 PF00438 S-adenosylmethionine synthetase, N-terminal domain CJ010_03815 PF02773 S-adenosylmethionine synthetase, C-terminal domain CJ010_03825 PF03279 Bacterial lipid A biosynthesis acyltransferase CJ010_03835 PF01678 Diaminopimelate epimerase CJ010_03845 PF00589 Phage integrase family CJ010_03845 PF02899 Phage integrase, N-terminal SAM-like domain CJ010_03855 PF17785 PUA-like domain CJ010_03855 PF10672 S-adenosylmethionine-dependent methyltransferase CJ010_03875 PF17864 RuvB AAA lid domain CJ010_03875 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJ010_03875 PF05491 RuvB C-terminal winged helix domain CJ010_03880 PF07499 RuvA, C-terminal domain CJ010_03880 PF01330 RuvA N terminal domain CJ010_03895 PF07690 Major Facilitator Superfamily CJ010_03910 PF07670 Nucleoside recognition CJ010_03910 PF02421 Ferrous iron transport protein B CJ010_03910 PF17910 FeoB cytosolic helical domain CJ010_03910 PF07664 Ferrous iron transport protein B C terminus CJ010_03915 PF00163 Ribosomal protein S4/S9 N-terminal domain CJ010_03915 PF01479 S4 domain CJ010_03925 PF13640 2OG-Fe(II) oxygenase superfamily CJ010_03925 PF18331 PKHD-type hydroxylase C-terminal domain CJ010_03930 PF01070 FMN-dependent dehydrogenase CJ010_03935 PF00593 TonB dependent receptor CJ010_03935 PF07715 TonB-dependent Receptor Plug Domain CJ010_03940 PF02321 Outer membrane efflux protein CJ010_03945 PF02687 FtsX-like permease family CJ010_03945 PF12704 MacB-like periplasmic core domain CJ010_03945 PF00005 ABC transporter CJ010_03950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ010_03955 PF02472 Biopolymer transport protein ExbD/TolR CJ010_03960 PF01618 MotA/TolQ/ExbB proton channel family CJ010_03965 PF03544 Gram-negative bacterial TonB protein C-terminal CJ010_03970 PF00210 Ferritin-like domain CJ010_03975 PF04324 BFD-like [2Fe-2S] binding domain CJ010_03980 PF10636 Hemin uptake protein hemP CJ010_03995 PF08447 PAS fold CJ010_03995 PF08448 PAS fold CJ010_03995 PF00990 Diguanylate cyclase, GGDEF domain CJ010_03995 PF00563 EAL domain CJ010_04015 PF01790 Prolipoprotein diacylglyceryl transferase CJ010_04020 PF04337 Protein of unknown function, DUF480 CJ010_04025 PF00211 Adenylate and Guanylate cyclase catalytic domain CJ010_04030 PF05736 OprF membrane domain CJ010_04030 PF00691 OmpA family CJ010_04040 PF01966 HD domain CJ010_04045 PF00920 Dehydratase family CJ010_04070 PF01925 Sulfite exporter TauE/SafE CJ010_04080 PF13183 4Fe-4S dicluster domain CJ010_04080 PF02754 Cysteine-rich domain CJ010_04090 PF01297 Zinc-uptake complex component A periplasmic CJ010_04095 PF00950 ABC 3 transport family CJ010_04100 PF00005 ABC transporter CJ010_04105 PF01475 Ferric uptake regulator family CJ010_04110 PF07238 PilZ domain CJ010_04115 PF00664 ABC transporter transmembrane region CJ010_04115 PF00005 ABC transporter CJ010_04115 PF03412 Peptidase C39 family CJ010_04120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ010_04120 PF00529 HlyD membrane-fusion protein of T1SS CJ010_04125 PF00196 Bacterial regulatory proteins, luxR family CJ010_04125 PF00072 Response regulator receiver domain CJ010_04160 PF02321 Outer membrane efflux protein CJ010_04165 PF00512 His Kinase A (phospho-acceptor) domain CJ010_04165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_04165 PF00989 PAS fold CJ010_04165 PF01627 Hpt domain CJ010_04165 PF18415 Histidine kinase receptor ArcB trans-membrane domain CJ010_04165 PF00072 Response regulator receiver domain CJ010_04170 PF00072 Response regulator receiver domain CJ010_04185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJ010_04185 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_04190 PF00005 ABC transporter CJ010_04190 PF00664 ABC transporter transmembrane region CJ010_04195 PF01863 Protein of unknown function DUF45 CJ010_04205 PF00271 Helicase conserved C-terminal domain CJ010_04205 PF00270 DEAD/DEAH box helicase CJ010_04205 PF03880 DbpA RNA binding domain CJ010_04210 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJ010_04210 PF00364 Biotin-requiring enzyme CJ010_04210 PF02817 e3 binding domain CJ010_04215 PF17831 Pyruvate dehydrogenase E1 component middle domain CJ010_04215 PF00456 Transketolase, thiamine diphosphate binding domain CJ010_04220 PF01037 Lrp/AsnC ligand binding domain CJ010_04225 PF01066 CDP-alcohol phosphatidyltransferase CJ010_04230 PF12146 Serine aminopeptidase, S33 CJ010_04230 PF12147 Putative methyltransferase CJ010_04235 PF00782 Dual specificity phosphatase, catalytic domain CJ010_04245 PF01553 Acyltransferase CJ010_04260 PF02653 Branched-chain amino acid transport system / permease component CJ010_04265 PF02653 Branched-chain amino acid transport system / permease component CJ010_04270 PF00005 ABC transporter CJ010_04270 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_04275 PF00005 ABC transporter CJ010_04280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_04280 PF03466 LysR substrate binding domain CJ010_04285 PF00378 Enoyl-CoA hydratase/isomerase CJ010_04290 PF04341 Protein of unknown function, DUF485 CJ010_04295 PF00474 Sodium:solute symporter family CJ010_04300 PF03471 Transporter associated domain CJ010_04300 PF00571 CBS domain CJ010_04300 PF01595 Cyclin M transmembrane N-terminal domain CJ010_04305 PF00392 Bacterial regulatory proteins, gntR family CJ010_04305 PF07729 FCD domain CJ010_04310 PF02310 B12 binding domain CJ010_04310 PF01642 Methylmalonyl-CoA mutase CJ010_04320 PF01039 Carboxyl transferase domain CJ010_04325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJ010_04325 PF00289 Biotin carboxylase, N-terminal domain CJ010_04325 PF02785 Biotin carboxylase C-terminal domain CJ010_04330 PF03707 Bacterial signalling protein N terminal repeat CJ010_04330 PF00563 EAL domain CJ010_04330 PF00990 Diguanylate cyclase, GGDEF domain CJ010_04335 PF04055 Radical SAM superfamily CJ010_04340 PF04228 Putative neutral zinc metallopeptidase CJ010_04350 PF00486 Transcriptional regulatory protein, C terminal CJ010_04350 PF00072 Response regulator receiver domain CJ010_04355 PF13188 PAS domain CJ010_04355 PF00072 Response regulator receiver domain CJ010_04355 PF00512 His Kinase A (phospho-acceptor) domain CJ010_04355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_04355 PF08448 PAS fold CJ010_04360 PF12833 Helix-turn-helix domain CJ010_04360 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CJ010_04365 PF02310 B12 binding domain CJ010_04365 PF01642 Methylmalonyl-CoA mutase CJ010_04370 PF10415 Fumarase C C-terminus CJ010_04370 PF00206 Lyase CJ010_04380 PF10017 Histidine-specific methyltransferase, SAM-dependent CJ010_04385 PF03781 Sulfatase-modifying factor enzyme 1 CJ010_04385 PF12867 DinB superfamily CJ010_04390 PF00933 Glycosyl hydrolase family 3 N terminal domain CJ010_04395 PF06123 Inner membrane protein CreD CJ010_04400 PF00672 HAMP domain CJ010_04400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_04400 PF00512 His Kinase A (phospho-acceptor) domain CJ010_04405 PF00072 Response regulator receiver domain CJ010_04405 PF00486 Transcriptional regulatory protein, C terminal CJ010_04410 PF03448 MgtE intracellular N domain CJ010_04410 PF01769 Divalent cation transporter CJ010_04410 PF00571 CBS domain CJ010_04415 PF00912 Transglycosylase CJ010_04420 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CJ010_04420 PF08501 Shikimate dehydrogenase substrate binding domain CJ010_04420 PF01488 Shikimate / quinate 5-dehydrogenase CJ010_04430 PF00773 RNB domain CJ010_04435 PF01209 ubiE/COQ5 methyltransferase family CJ010_04440 PF05728 Uncharacterised protein family (UPF0227) CJ010_04445 PF02673 Bacitracin resistance protein BacA CJ010_04450 PF03692 Putative zinc- or iron-chelating domain CJ010_04465 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CJ010_04465 PF00271 Helicase conserved C-terminal domain CJ010_04465 PF04408 Helicase associated domain (HA2) CJ010_04465 PF11898 Domain of unknown function (DUF3418) CJ010_04465 PF00270 DEAD/DEAH box helicase CJ010_04475 PF01250 Ribosomal protein S6 CJ010_04485 PF01084 Ribosomal protein S18 CJ010_04490 PF03948 Ribosomal protein L9, C-terminal domain CJ010_04490 PF01281 Ribosomal protein L9, N-terminal domain CJ010_04495 PF00772 DnaB-like helicase N terminal domain CJ010_04495 PF03796 DnaB-like helicase C terminal domain CJ010_04525 PF01494 FAD binding domain CJ010_04530 PF10411 Disulfide bond isomerase protein N-terminus CJ010_04530 PF13098 Thioredoxin-like domain CJ010_04535 PF03562 MltA specific insert domain CJ010_04535 PF06725 3D domain CJ010_04545 PF00293 NUDIX domain CJ010_04550 PF03884 DNA gyrase inhibitor YacG CJ010_04555 PF07072 Cell division protein CJ010_04560 PF01121 Dephospho-CoA kinase CJ010_04570 PF03309 Type III pantothenate kinase CJ010_04575 PF02237 Biotin protein ligase C terminal domain CJ010_04575 PF03099 Biotin/lipoate A/B protein ligase family CJ010_04575 PF08279 HTH domain CJ010_04580 PF00072 Response regulator receiver domain CJ010_04580 PF00158 Sigma-54 interaction domain CJ010_04580 PF02954 Bacterial regulatory protein, Fis family CJ010_04585 PF00989 PAS fold CJ010_04585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_04585 PF00512 His Kinase A (phospho-acceptor) domain CJ010_04605 PF02445 Quinolinate synthetase A protein CJ010_04610 PF03372 Endonuclease/Exonuclease/phosphatase family CJ010_04615 PF13091 PLD-like domain CJ010_04620 PF13380 CoA binding domain CJ010_04625 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJ010_04645 PF00535 Glycosyl transferase family 2 CJ010_04660 PF06071 Protein of unknown function (DUF933) CJ010_04660 PF01926 50S ribosome-binding GTPase CJ010_04665 PF01195 Peptidyl-tRNA hydrolase CJ010_04670 PF14693 Ribosomal protein TL5, C-terminal domain CJ010_04670 PF01386 Ribosomal L25p family CJ010_04675 PF14572 Phosphoribosyl synthetase-associated domain CJ010_04675 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CJ010_04685 PF08544 GHMP kinases C terminal CJ010_04685 PF00288 GHMP kinases N terminal domain CJ010_04690 PF03550 Outer membrane lipoprotein LolB CJ010_04700 PF06827 Zinc finger found in FPG and IleRS CJ010_04700 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CJ010_04700 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CJ010_04705 PF00350 Dynamin family CJ010_04710 PF00037 4Fe-4S binding domain CJ010_04715 PF01467 Cytidylyltransferase-like CJ010_04725 PF00675 Insulinase (Peptidase family M16) CJ010_04725 PF05193 Peptidase M16 inactive domain CJ010_04730 PF00675 Insulinase (Peptidase family M16) CJ010_04730 PF05193 Peptidase M16 inactive domain CJ010_04735 PF00448 SRP54-type protein, GTPase domain CJ010_04735 PF02881 SRP54-type protein, helical bundle domain CJ010_04740 PF00005 ABC transporter CJ010_04745 PF18075 FtsX extracellular domain CJ010_04750 PF00578 AhpC/TSA family CJ010_04750 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJ010_04755 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_04755 PF13192 Thioredoxin domain CJ010_04765 PF00486 Transcriptional regulatory protein, C terminal CJ010_04765 PF00072 Response regulator receiver domain CJ010_04770 PF00072 Response regulator receiver domain CJ010_04770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_04770 PF13426 PAS domain CJ010_04790 PF04055 Radical SAM superfamily CJ010_04790 PF01938 TRAM domain CJ010_04790 PF00919 Uncharacterized protein family UPF0004 CJ010_04795 PF02562 PhoH-like protein CJ010_04800 PF02130 Uncharacterized protein family UPF0054 CJ010_04805 PF00571 CBS domain CJ010_04805 PF03471 Transporter associated domain CJ010_04810 PF00795 Carbon-nitrogen hydrolase CJ010_04820 PF00873 AcrB/AcrD/AcrF family CJ010_04825 PF02091 Glycyl-tRNA synthetase alpha subunit CJ010_04830 PF02092 Glycyl-tRNA synthetase beta subunit CJ010_04830 PF05746 DALR anticodon binding domain CJ010_04840 PF01553 Acyltransferase CJ010_04850 PF00378 Enoyl-CoA hydratase/isomerase CJ010_04855 PF03968 OstA-like protein CJ010_04870 PF00571 CBS domain CJ010_04870 PF01380 SIS domain CJ010_04875 PF02254 TrkA-N domain CJ010_04875 PF02080 TrkA-C domain CJ010_04875 PF00999 Sodium/hydrogen exchanger family CJ010_04910 PF00482 Type II secretion system (T2SS), protein F CJ010_04915 PF00437 Type II/IV secretion system protein CJ010_04930 PF00005 ABC transporter CJ010_04935 PF02405 Permease MlaE CJ010_04940 PF02470 MlaD protein CJ010_04960 PF00005 ABC transporter CJ010_04965 PF01061 ABC-2 type transporter CJ010_04975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJ010_04980 PF01272 Transcription elongation factor, GreA/GreB, C-term CJ010_04980 PF14760 Rnk N-terminus CJ010_04985 PF01634 ATP phosphoribosyltransferase CJ010_04990 PF00815 Histidinol dehydrogenase CJ010_04995 PF00155 Aminotransferase class I and II CJ010_05000 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CJ010_05000 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CJ010_05005 PF03949 Malic enzyme, NAD binding domain CJ010_05005 PF00390 Malic enzyme, N-terminal domain CJ010_05005 PF01515 Phosphate acetyl/butaryl transferase CJ010_05015 PF00768 D-alanyl-D-alanine carboxypeptidase CJ010_05025 PF02754 Cysteine-rich domain CJ010_05030 PF11870 Domain of unknown function (DUF3390) CJ010_05030 PF13183 4Fe-4S dicluster domain CJ010_05030 PF02589 LUD domain CJ010_05035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJ010_05035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJ010_05050 PF01479 S4 domain CJ010_05050 PF00849 RNA pseudouridylate synthase CJ010_05065 PF12704 MacB-like periplasmic core domain CJ010_05065 PF02687 FtsX-like permease family CJ010_05065 PF00005 ABC transporter CJ010_05070 PF12704 MacB-like periplasmic core domain CJ010_05070 PF00005 ABC transporter CJ010_05070 PF02687 FtsX-like permease family CJ010_05075 PF02687 FtsX-like permease family CJ010_05075 PF12704 MacB-like periplasmic core domain CJ010_05075 PF00005 ABC transporter CJ010_05085 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CJ010_05085 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJ010_05090 PF00924 Mechanosensitive ion channel CJ010_05095 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CJ010_05100 PF00691 OmpA family CJ010_05105 PF00271 Helicase conserved C-terminal domain CJ010_05105 PF00176 SNF2 family N-terminal domain CJ010_05105 PF04434 SWIM zinc finger CJ010_05115 PF13667 ThiC-associated domain CJ010_05115 PF01964 Radical SAM ThiC family CJ010_05120 PF08543 Phosphomethylpyrimidine kinase CJ010_05125 PF00194 Eukaryotic-type carbonic anhydrase CJ010_05130 PF00155 Aminotransferase class I and II CJ010_05130 PF00392 Bacterial regulatory proteins, gntR family CJ010_05140 PF00440 Bacterial regulatory proteins, tetR family CJ010_05145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ010_05150 PF00873 AcrB/AcrD/AcrF family CJ010_05160 PF00581 Rhodanese-like domain CJ010_05165 PF02321 Outer membrane efflux protein CJ010_05170 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CJ010_05170 PF00534 Glycosyl transferases group 1 CJ010_05175 PF01370 NAD dependent epimerase/dehydratase family CJ010_05180 PF00149 Calcineurin-like phosphoesterase CJ010_05195 PF00534 Glycosyl transferases group 1 CJ010_05195 PF13439 Glycosyltransferase Family 4 CJ010_05200 PF00294 pfkB family carbohydrate kinase CJ010_05210 PF01219 Prokaryotic diacylglycerol kinase CJ010_05225 PF02785 Biotin carboxylase C-terminal domain CJ010_05225 PF00289 Biotin carboxylase, N-terminal domain CJ010_05225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJ010_05230 PF00364 Biotin-requiring enzyme CJ010_05235 PF01220 Dehydroquinase class II CJ010_05240 PF00578 AhpC/TSA family CJ010_05250 PF08245 Mur ligase middle domain CJ010_05250 PF01225 Mur ligase family, catalytic domain CJ010_05250 PF02875 Mur ligase family, glutamate ligase domain CJ010_05260 PF13580 SIS domain CJ010_05265 PF02021 Uncharacterised protein family UPF0102 CJ010_05270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJ010_05275 PF01979 Amidohydrolase family CJ010_05290 PF02381 MraZ protein, putative antitoxin-like CJ010_05305 PF00905 Penicillin binding protein transpeptidase domain CJ010_05305 PF03717 Penicillin-binding Protein dimerisation domain CJ010_05310 PF08245 Mur ligase middle domain CJ010_05310 PF01225 Mur ligase family, catalytic domain CJ010_05310 PF02875 Mur ligase family, glutamate ligase domain CJ010_05315 PF08245 Mur ligase middle domain CJ010_05315 PF02875 Mur ligase family, glutamate ligase domain CJ010_05315 PF01225 Mur ligase family, catalytic domain CJ010_05320 PF00953 Glycosyl transferase family 4 CJ010_05320 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CJ010_05325 PF08245 Mur ligase middle domain CJ010_05330 PF01098 Cell cycle protein CJ010_05335 PF04101 Glycosyltransferase family 28 C-terminal domain CJ010_05335 PF03033 Glycosyltransferase family 28 N-terminal domain CJ010_05340 PF08245 Mur ligase middle domain CJ010_05340 PF01225 Mur ligase family, catalytic domain CJ010_05340 PF02875 Mur ligase family, glutamate ligase domain CJ010_05345 PF01820 D-ala D-ala ligase N-terminus CJ010_05345 PF07478 D-ala D-ala ligase C-terminus CJ010_05350 PF03799 Cell division protein FtsQ CJ010_05350 PF08478 POTRA domain, FtsQ-type CJ010_05355 PF02491 SHS2 domain inserted in FTSA CJ010_05360 PF00091 Tubulin/FtsZ family, GTPase domain CJ010_05360 PF12327 FtsZ family, C-terminal domain CJ010_05365 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CJ010_05380 PF07517 SecA DEAD-like domain CJ010_05380 PF01043 SecA preprotein cross-linking domain CJ010_05380 PF07516 SecA Wing and Scaffold domain CJ010_05380 PF02810 SEC-C motif CJ010_05390 PF01960 ArgJ family CJ010_05405 PF03793 PASTA domain CJ010_05405 PF00069 Protein kinase domain CJ010_05415 PF04379 ApaG domain CJ010_05420 PF08328 Adenylosuccinate lyase C-terminal CJ010_05420 PF00206 Lyase CJ010_05430 PF07549 SecD/SecF GG Motif CJ010_05430 PF02355 Protein export membrane protein CJ010_05435 PF02355 Protein export membrane protein CJ010_05435 PF13721 SecD export protein N-terminal TM region CJ010_05435 PF07549 SecD/SecF GG Motif CJ010_05440 PF02699 Preprotein translocase subunit CJ010_05450 PF01702 Queuine tRNA-ribosyltransferase CJ010_05455 PF02547 Queuosine biosynthesis protein CJ010_05465 PF03466 LysR substrate binding domain CJ010_05465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_05475 PF01027 Inhibitor of apoptosis-promoting Bax1 CJ010_05480 PF00999 Sodium/hydrogen exchanger family CJ010_05480 PF02254 TrkA-N domain CJ010_05485 PF01595 Cyclin M transmembrane N-terminal domain CJ010_05485 PF00571 CBS domain CJ010_05485 PF03471 Transporter associated domain CJ010_05490 PF03741 Integral membrane protein TerC family CJ010_05495 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CJ010_05500 PF11734 TilS substrate C-terminal domain CJ010_05500 PF01171 PP-loop family CJ010_05500 PF09179 TilS substrate binding domain CJ010_05505 PF00196 Bacterial regulatory proteins, luxR family CJ010_05505 PF00072 Response regulator receiver domain CJ010_05510 PF00512 His Kinase A (phospho-acceptor) domain CJ010_05510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_05510 PF00989 PAS fold CJ010_05515 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_05520 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CJ010_05525 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJ010_05530 PF09335 SNARE associated Golgi protein CJ010_05535 PF00334 Nucleoside diphosphate kinase CJ010_05540 PF04055 Radical SAM superfamily CJ010_05550 PF13464 Domain of unknown function (DUF4115) CJ010_05555 PF04551 GcpE protein CJ010_05560 PF13393 Histidyl-tRNA synthetase CJ010_05560 PF03129 Anticodon binding domain CJ010_05570 PF13360 PQQ-like domain CJ010_05575 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CJ010_05575 PF01926 50S ribosome-binding GTPase CJ010_05580 PF17209 Hfq protein CJ010_05585 PF16360 GTP-binding GTPase Middle Region CJ010_05585 PF13167 GTP-binding GTPase N-terminal CJ010_05585 PF01926 50S ribosome-binding GTPase CJ010_05590 PF01145 SPFH domain / Band 7 family CJ010_05590 PF12221 Bacterial membrane protein N terminal CJ010_05595 PF01145 SPFH domain / Band 7 family CJ010_05605 PF13393 Histidyl-tRNA synthetase CJ010_05610 PF00709 Adenylosuccinate synthetase CJ010_05625 PF00773 RNB domain CJ010_05625 PF08461 Ribonuclease R winged-helix domain CJ010_05625 PF00575 S1 RNA binding domain CJ010_05625 PF17876 Cold shock domain CJ010_05625 PF08206 Ribonuclease B OB domain CJ010_05630 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJ010_05630 PF00588 SpoU rRNA Methylase family CJ010_05635 PF03861 ANTAR domain CJ010_05635 PF08376 Nitrate and nitrite sensing CJ010_05645 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_05650 PF00005 ABC transporter CJ010_05660 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJ010_05665 PF04324 BFD-like [2Fe-2S] binding domain CJ010_05665 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJ010_05665 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJ010_05665 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_05665 PF18267 Rubredoxin NAD+ reductase C-terminal domain CJ010_05675 PF00384 Molybdopterin oxidoreductase CJ010_05675 PF01568 Molydopterin dinucleotide binding domain CJ010_05675 PF04324 BFD-like [2Fe-2S] binding domain CJ010_05675 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJ010_05680 PF00672 HAMP domain CJ010_05680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_05690 PF00990 Diguanylate cyclase, GGDEF domain CJ010_05690 PF00563 EAL domain CJ010_05690 PF03707 Bacterial signalling protein N terminal repeat CJ010_05700 PF01396 Topoisomerase DNA binding C4 zinc finger CJ010_05705 PF00881 Nitroreductase family CJ010_05710 PF00258 Flavodoxin CJ010_05720 PF02535 ZIP Zinc transporter CJ010_05730 PF12170 DNA polymerase III tau subunit V interacting with alpha CJ010_05730 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CJ010_05730 PF12169 DNA polymerase III subunits gamma and tau domain III CJ010_05735 PF02575 YbaB/EbfC DNA-binding family CJ010_05740 PF02132 RecR protein CJ010_05740 PF13662 Toprim domain CJ010_05745 PF00355 Rieske [2Fe-2S] domain CJ010_05745 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CJ010_05750 PF00033 Cytochrome b/b6/petB CJ010_05750 PF00032 Cytochrome b(C-terminal)/b6/petD CJ010_05755 PF02167 Cytochrome C1 family CJ010_05760 PF02798 Glutathione S-transferase, N-terminal domain CJ010_05760 PF00043 Glutathione S-transferase, C-terminal domain CJ010_05770 PF13439 Glycosyltransferase Family 4 CJ010_05770 PF00534 Glycosyl transferases group 1 CJ010_05775 PF01814 Hemerythrin HHE cation binding domain CJ010_05780 PF01266 FAD dependent oxidoreductase CJ010_05785 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CJ010_05805 PF00005 ABC transporter CJ010_05810 PF00166 Chaperonin 10 Kd subunit CJ010_05815 PF00118 TCP-1/cpn60 chaperonin family CJ010_05820 PF00486 Transcriptional regulatory protein, C terminal CJ010_05820 PF00072 Response regulator receiver domain CJ010_05825 PF08521 Two-component sensor kinase N-terminal CJ010_05825 PF00512 His Kinase A (phospho-acceptor) domain CJ010_05825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_05830 PF04341 Protein of unknown function, DUF485 CJ010_05835 PF00474 Sodium:solute symporter family CJ010_05905 PF06470 SMC proteins Flexible Hinge Domain CJ010_05905 PF02463 RecF/RecN/SMC N terminal domain CJ010_05945 PF01488 Shikimate / quinate 5-dehydrogenase CJ010_05945 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CJ010_05945 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CJ010_05950 PF03462 PCRF domain CJ010_05950 PF00472 RF-1 domain CJ010_05955 PF05175 Methyltransferase small domain CJ010_05955 PF17827 PrmC N-terminal domain CJ010_05960 PF00462 Glutaredoxin CJ010_05985 PF00069 Protein kinase domain CJ010_05985 PF03793 PASTA domain CJ010_05990 PF00206 Lyase CJ010_05990 PF14698 Argininosuccinate lyase C-terminal CJ010_05995 PF13492 GAF domain CJ010_05995 PF07694 5TMR of 5TMR-LYT CJ010_05995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_05995 PF06580 Histidine kinase CJ010_06000 PF00072 Response regulator receiver domain CJ010_06000 PF04397 LytTr DNA-binding domain CJ010_06005 PF00311 Phosphoenolpyruvate carboxylase CJ010_06015 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CJ010_06015 PF03900 Porphobilinogen deaminase, C-terminal domain CJ010_06020 PF02602 Uroporphyrinogen-III synthase HemD CJ010_06025 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CJ010_06040 PF02913 FAD linked oxidases, C-terminal domain CJ010_06040 PF01565 FAD binding domain CJ010_06045 PF01565 FAD binding domain CJ010_06050 PF13183 4Fe-4S dicluster domain CJ010_06050 PF02754 Cysteine-rich domain CJ010_06060 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CJ010_06060 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CJ010_06065 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CJ010_06070 PF02233 NAD(P) transhydrogenase beta subunit CJ010_06080 PF00563 EAL domain CJ010_06080 PF00990 Diguanylate cyclase, GGDEF domain CJ010_06080 PF03707 Bacterial signalling protein N terminal repeat CJ010_06085 PF00271 Helicase conserved C-terminal domain CJ010_06085 PF00270 DEAD/DEAH box helicase CJ010_06090 PF18125 RlmM ferredoxin-like domain CJ010_06090 PF01728 FtsJ-like methyltransferase CJ010_06095 PF00248 Aldo/keto reductase family CJ010_06105 PF13416 Bacterial extracellular solute-binding protein CJ010_06110 PF03009 Glycerophosphoryl diester phosphodiesterase family CJ010_06115 PF00348 Polyprenyl synthetase CJ010_06125 PF03466 LysR substrate binding domain CJ010_06125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_06130 PF01070 FMN-dependent dehydrogenase CJ010_06135 PF13525 Outer membrane lipoprotein CJ010_06140 PF00849 RNA pseudouridylate synthase CJ010_06155 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CJ010_06160 PF00106 short chain dehydrogenase CJ010_06165 PF00106 short chain dehydrogenase CJ010_06170 PF05233 PHB accumulation regulatory domain CJ010_06170 PF07879 PHB/PHA accumulation regulator DNA-binding domain CJ010_06195 PF00919 Uncharacterized protein family UPF0004 CJ010_06195 PF04055 Radical SAM superfamily CJ010_06195 PF18693 TRAM domain CJ010_06200 PF01734 Patatin-like phospholipase CJ010_06205 PF01565 FAD binding domain CJ010_06205 PF02913 FAD linked oxidases, C-terminal domain CJ010_06240 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJ010_06240 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJ010_06245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJ010_06245 PF07498 Rho termination factor, N-terminal domain CJ010_06245 PF07497 Rho termination factor, RNA-binding domain CJ010_06250 PF00085 Thioredoxin CJ010_06255 PF00037 4Fe-4S binding domain CJ010_06255 PF11953 Domain of unknown function (DUF3470) CJ010_06265 PF00501 AMP-binding enzyme CJ010_06265 PF13193 AMP-binding enzyme C-terminal domain CJ010_06270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJ010_06270 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJ010_06270 PF00205 Thiamine pyrophosphate enzyme, central domain CJ010_06275 PF01842 ACT domain CJ010_06280 PF01264 Chorismate synthase CJ010_06290 PF01435 Peptidase family M48 CJ010_06295 PF00330 Aconitase family (aconitate hydratase) CJ010_06300 PF00694 Aconitase C-terminal domain CJ010_06305 PF00180 Isocitrate/isopropylmalate dehydrogenase CJ010_06310 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJ010_06310 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJ010_06325 PF01416 tRNA pseudouridine synthase CJ010_06330 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CJ010_06335 PF00291 Pyridoxal-phosphate dependent enzyme CJ010_06340 PF00290 Tryptophan synthase alpha chain CJ010_06345 PF17848 Acetyl-coA carboxylase zinc finger domain CJ010_06345 PF01039 Carboxyl transferase domain CJ010_06350 PF08245 Mur ligase middle domain CJ010_06350 PF02875 Mur ligase family, glutamate ligase domain CJ010_06365 PF00156 Phosphoribosyl transferase domain CJ010_06370 PF01053 Cys/Met metabolism PLP-dependent enzyme CJ010_06375 PF00149 Calcineurin-like phosphoesterase CJ010_06380 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJ010_06385 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJ010_06400 PF09190 DALR domain CJ010_06400 PF01406 tRNA synthetases class I (C) catalytic domain CJ010_06410 PF01556 DnaJ C terminal domain CJ010_06410 PF00684 DnaJ central domain CJ010_06410 PF00226 DnaJ domain CJ010_06415 PF00012 Hsp70 protein CJ010_06420 PF01025 GrpE CJ010_06430 PF00521 DNA gyrase/topoisomerase IV, subunit A CJ010_06430 PF03989 DNA gyrase C-terminal domain, beta-propeller CJ010_06435 PF00266 Aminotransferase class-V CJ010_06440 PF01842 ACT domain CJ010_06440 PF01817 Chorismate mutase type II CJ010_06440 PF00800 Prephenate dehydratase CJ010_06450 PF02153 Prephenate dehydrogenase CJ010_06450 PF01842 ACT domain CJ010_06455 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJ010_06460 PF00575 S1 RNA binding domain CJ010_06465 PF00216 Bacterial DNA-binding protein CJ010_06475 PF18073 Rubredoxin metal binding domain CJ010_06480 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CJ010_06480 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CJ010_06480 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CJ010_06485 PF00291 Pyridoxal-phosphate dependent enzyme CJ010_06510 PF04226 Transglycosylase associated protein CJ010_06520 PF03129 Anticodon binding domain CJ010_06520 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJ010_06520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJ010_06520 PF02824 TGS domain CJ010_06525 PF00707 Translation initiation factor IF-3, C-terminal domain CJ010_06525 PF05198 Translation initiation factor IF-3, N-terminal domain CJ010_06530 PF01632 Ribosomal protein L35 CJ010_06535 PF00453 Ribosomal protein L20 CJ010_06540 PF01409 tRNA synthetases class II core domain (F) CJ010_06540 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CJ010_06545 PF03484 tRNA synthetase B5 domain CJ010_06545 PF03147 Ferredoxin-fold anticodon binding domain CJ010_06545 PF01588 Putative tRNA binding domain CJ010_06545 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CJ010_06545 PF03483 B3/4 domain CJ010_06550 PF00216 Bacterial DNA-binding protein CJ010_06565 PF01975 Survival protein SurE CJ010_06575 PF01476 LysM domain CJ010_06575 PF01551 Peptidase family M23 CJ010_06580 PF00140 Sigma-70 factor, region 1.2 CJ010_06580 PF04542 Sigma-70 region 2 CJ010_06580 PF04539 Sigma-70 region 3 CJ010_06580 PF04545 Sigma-70, region 4 CJ010_06585 PF13406 Transglycosylase SLT domain CJ010_06590 PF11992 Domain of unknown function (DUF3488) CJ010_06590 PF01841 Transglutaminase-like superfamily CJ010_06590 PF13559 Domain of unknown function (DUF4129) CJ010_06600 PF07726 ATPase family associated with various cellular activities (AAA) CJ010_06600 PF17863 AAA lid domain CJ010_06605 PF00850 Histone deacetylase domain CJ010_06610 PF00701 Dihydrodipicolinate synthetase family CJ010_06615 PF06804 NlpB/DapX lipoprotein CJ010_06625 PF08007 Cupin superfamily protein CJ010_06630 PF05958 tRNA (Uracil-5-)-methyltransferase CJ010_06630 PF01938 TRAM domain CJ010_06640 PF00849 RNA pseudouridylate synthase CJ010_06650 PF01312 FlhB HrpN YscU SpaS Family CJ010_06655 PF00771 FHIPEP family CJ010_06660 PF00448 SRP54-type protein, GTPase domain CJ010_06670 PF04545 Sigma-70, region 4 CJ010_06670 PF04539 Sigma-70 region 3 CJ010_06670 PF04542 Sigma-70 region 2 CJ010_06675 PF01618 MotA/TolQ/ExbB proton channel family CJ010_06680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_06680 PF00672 HAMP domain CJ010_06685 PF13677 Membrane MotB of proton-channel complex MotA/MotB CJ010_06685 PF00691 OmpA family CJ010_06690 PF01814 Hemerythrin HHE cation binding domain CJ010_06695 PF00521 DNA gyrase/topoisomerase IV, subunit A CJ010_06710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_06710 PF01751 Toprim domain CJ010_06710 PF00986 DNA gyrase B subunit, carboxyl terminus CJ010_06710 PF00204 DNA gyrase B CJ010_06715 PF03458 UPF0126 domain CJ010_06720 PF00463 Isocitrate lyase family CJ010_06725 PF12833 Helix-turn-helix domain CJ010_06725 PF14525 AraC-binding-like domain CJ010_06745 PF00866 Ring hydroxylating beta subunit CJ010_06750 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CJ010_06750 PF00355 Rieske [2Fe-2S] domain CJ010_06755 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_06755 PF00175 Oxidoreductase NAD-binding domain CJ010_06760 PF02653 Branched-chain amino acid transport system / permease component CJ010_06765 PF11862 Domain of unknown function (DUF3382) CJ010_06765 PF02653 Branched-chain amino acid transport system / permease component CJ010_06770 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_06770 PF00005 ABC transporter CJ010_06775 PF00005 ABC transporter CJ010_06785 PF03737 Aldolase/RraA CJ010_06795 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_06795 PF07724 AAA domain (Cdc48 subfamily) CJ010_06795 PF17871 AAA lid domain CJ010_06795 PF10431 C-terminal, D2-small domain, of ClpB protein CJ010_06795 PF02861 Clp amino terminal domain, pathogenicity island component CJ010_06800 PF02617 ATP-dependent Clp protease adaptor protein ClpS CJ010_06805 PF00313 'Cold-shock' DNA-binding domain CJ010_06810 PF00471 Ribosomal protein L33 CJ010_06815 PF00830 Ribosomal L28 family CJ010_06820 PF04002 RadC-like JAB domain CJ010_06825 PF04127 DNA / pantothenate metabolism flavoprotein CJ010_06825 PF02441 Flavoprotein CJ010_06830 PF00692 dUTPase CJ010_06835 PF00293 NUDIX domain CJ010_06840 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_06845 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_06845 PF10518 TAT (twin-arginine translocation) pathway signal sequence CJ010_06845 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CJ010_06855 PF00174 Oxidoreductase molybdopterin binding domain CJ010_06860 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_06890 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CJ010_06895 PF03971 Monomeric isocitrate dehydrogenase CJ010_06900 PF00180 Isocitrate/isopropylmalate dehydrogenase CJ010_06915 PF03764 Elongation factor G, domain IV CJ010_06915 PF00009 Elongation factor Tu GTP binding domain CJ010_06915 PF14492 Elongation Factor G, domain II CJ010_06915 PF00679 Elongation factor G C-terminus CJ010_06925 PF04172 LrgB-like family CJ010_06930 PF03788 LrgA family CJ010_06955 PF00510 Cytochrome c oxidase subunit III CJ010_06965 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJ010_06970 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CJ010_06980 PF01274 Malate synthase CJ010_06985 PF01925 Sulfite exporter TauE/SafE CJ010_06990 PF03466 LysR substrate binding domain CJ010_06990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_07000 PF03062 MBOAT, membrane-bound O-acyltransferase family CJ010_07010 PF00224 Pyruvate kinase, barrel domain CJ010_07010 PF02887 Pyruvate kinase, alpha/beta domain CJ010_07015 PF03928 Haem-degrading CJ010_07020 PF13660 Domain of unknown function (DUF4147) CJ010_07020 PF05161 MOFRL family CJ010_07030 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJ010_07030 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJ010_07035 PF01261 Xylose isomerase-like TIM barrel CJ010_07040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJ010_07040 PF00205 Thiamine pyrophosphate enzyme, central domain CJ010_07040 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJ010_07045 PF00113 Enolase, C-terminal TIM barrel domain CJ010_07045 PF03952 Enolase, N-terminal domain CJ010_07050 PF03466 LysR substrate binding domain CJ010_07050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_07055 PF02627 Carboxymuconolactone decarboxylase family CJ010_07065 PF04324 BFD-like [2Fe-2S] binding domain CJ010_07065 PF18267 Rubredoxin NAD+ reductase C-terminal domain CJ010_07065 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJ010_07065 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_07065 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJ010_07070 PF13806 Rieske-like [2Fe-2S] domain CJ010_07075 PF01226 Formate/nitrite transporter CJ010_07080 PF00069 Protein kinase domain CJ010_07080 PF03793 PASTA domain CJ010_07085 PF02293 AmiS/UreI family transporter CJ010_07095 PF00860 Permease family CJ010_07100 PF04115 Ureidoglycolate lyase CJ010_07105 PF03561 Allantoicase repeat CJ010_07110 PF00375 Sodium:dicarboxylate symporter family CJ010_07120 PF01177 Asp/Glu/Hydantoin racemase CJ010_07125 PF04115 Ureidoglycolate lyase CJ010_07130 PF03561 Allantoicase repeat CJ010_07145 PF09349 OHCU decarboxylase CJ010_07145 PF01014 Uricase CJ010_07155 PF00576 HIUase/Transthyretin family CJ010_07160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_07160 PF03466 LysR substrate binding domain CJ010_07165 PF00561 alpha/beta hydrolase fold CJ010_07170 PF13657 HipA N-terminal domain CJ010_07170 PF07804 HipA-like C-terminal domain CJ010_07180 PF08042 PqqA family CJ010_07185 PF12706 Beta-lactamase superfamily domain CJ010_07190 PF03070 TENA/THI-4/PQQC family CJ010_07195 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CJ010_07200 PF04055 Radical SAM superfamily CJ010_07200 PF13186 Iron-sulfur cluster-binding domain CJ010_07210 PF00072 Response regulator receiver domain CJ010_07210 PF00512 His Kinase A (phospho-acceptor) domain CJ010_07210 PF08448 PAS fold CJ010_07210 PF13426 PAS domain CJ010_07210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_07220 PF03401 Tripartite tricarboxylate transporter family receptor CJ010_07230 PF01970 Tripartite tricarboxylate transporter TctA family CJ010_07235 PF03741 Integral membrane protein TerC family CJ010_07245 PF03401 Tripartite tricarboxylate transporter family receptor CJ010_07255 PF08521 Two-component sensor kinase N-terminal CJ010_07255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_07255 PF00512 His Kinase A (phospho-acceptor) domain CJ010_07260 PF00072 Response regulator receiver domain CJ010_07260 PF00486 Transcriptional regulatory protein, C terminal CJ010_07280 PF13609 Gram-negative porin CJ010_07305 PF00005 ABC transporter CJ010_07310 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_07310 PF00005 ABC transporter CJ010_07325 PF13458 Periplasmic binding protein CJ010_07330 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_07330 PF14759 Reductase C-terminal CJ010_07335 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_07340 PF00120 Glutamine synthetase, catalytic domain CJ010_07345 PF00355 Rieske [2Fe-2S] domain CJ010_07355 PF00881 Nitroreductase family CJ010_07360 PF07690 Major Facilitator Superfamily CJ010_07365 PF00202 Aminotransferase class-III CJ010_07370 PF00296 Luciferase-like monooxygenase CJ010_07375 PF02649 Type I GTP cyclohydrolase folE2 CJ010_07380 PF02780 Transketolase, C-terminal domain CJ010_07380 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CJ010_07380 PF02779 Transketolase, pyrimidine binding domain CJ010_07385 PF00348 Polyprenyl synthetase CJ010_07390 PF02609 Exonuclease VII small subunit CJ010_07400 PF02401 LytB protein CJ010_07405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJ010_07410 PF01252 Signal peptidase (SPase) II CJ010_07415 PF06827 Zinc finger found in FPG and IleRS CJ010_07415 PF00133 tRNA synthetases class I (I, L, M and V) CJ010_07415 PF08264 Anticodon-binding domain of tRNA CJ010_07420 PF01687 Riboflavin kinase CJ010_07420 PF06574 FAD synthetase CJ010_07430 PF00753 Metallo-beta-lactamase superfamily CJ010_07430 PF16123 Hydroxyacylglutathione hydrolase C-terminus CJ010_07440 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJ010_07440 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJ010_07465 PF01297 Zinc-uptake complex component A periplasmic CJ010_07470 PF00005 ABC transporter CJ010_07475 PF00950 ABC 3 transport family CJ010_07480 PF00950 ABC 3 transport family CJ010_07485 PF02332 Methane/Phenol/Toluene Hydroxylase CJ010_07490 PF00970 Oxidoreductase FAD-binding domain CJ010_07490 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_07490 PF00175 Oxidoreductase NAD-binding domain CJ010_07495 PF02332 Methane/Phenol/Toluene Hydroxylase CJ010_07500 PF02406 MmoB/DmpM family CJ010_07505 PF00118 TCP-1/cpn60 chaperonin family CJ010_07510 PF02954 Bacterial regulatory protein, Fis family CJ010_07510 PF13426 PAS domain CJ010_07510 PF00158 Sigma-54 interaction domain CJ010_07515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJ010_07525 PF05199 GMC oxidoreductase CJ010_07525 PF00732 GMC oxidoreductase CJ010_07535 PF00158 Sigma-54 interaction domain CJ010_07535 PF00072 Response regulator receiver domain CJ010_07535 PF02954 Bacterial regulatory protein, Fis family CJ010_07540 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CJ010_07540 PF00355 Rieske [2Fe-2S] domain CJ010_07545 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_07545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJ010_07560 PF00557 Metallopeptidase family M24 CJ010_07565 PF01520 N-acetylmuramoyl-L-alanine amidase CJ010_07565 PF11741 AMIN domain CJ010_07570 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CJ010_07575 PF08331 Domain of unknown function (DUF1730) CJ010_07580 PF00672 HAMP domain CJ010_07580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_07585 PF05360 yiaA/B two helix domain CJ010_07590 PF13378 Enolase C-terminal domain-like CJ010_07595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_07595 PF03466 LysR substrate binding domain CJ010_07600 PF02579 Dinitrogenase iron-molybdenum cofactor CJ010_07600 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal CJ010_07615 PF12392 Collagenase CJ010_07615 PF01136 Peptidase family U32 CJ010_07625 PF07995 Glucose / Sorbosone dehydrogenase CJ010_07630 PF03707 Bacterial signalling protein N terminal repeat CJ010_07630 PF00563 EAL domain CJ010_07630 PF00990 Diguanylate cyclase, GGDEF domain CJ010_07635 PF13416 Bacterial extracellular solute-binding protein CJ010_07640 PF00069 Protein kinase domain CJ010_07640 PF03793 PASTA domain CJ010_07650 PF01546 Peptidase family M20/M25/M40 CJ010_07650 PF07687 Peptidase dimerisation domain CJ010_07660 PF04536 TPM domain CJ010_07670 PF07311 Dodecin CJ010_07690 PF01556 DnaJ C terminal domain CJ010_07690 PF00226 DnaJ domain CJ010_07695 PF03061 Thioesterase superfamily CJ010_07700 PF09905 DNA-binding protein VF530 CJ010_07705 PF02222 ATP-grasp domain CJ010_07705 PF01370 NAD dependent epimerase/dehydratase family CJ010_07725 PF00005 ABC transporter CJ010_07730 PF02405 Permease MlaE CJ010_07735 PF00005 ABC transporter CJ010_07735 PF12848 ABC transporter CJ010_07755 PF00255 Glutathione peroxidase CJ010_07760 PF00563 EAL domain CJ010_07760 PF03707 Bacterial signalling protein N terminal repeat CJ010_07760 PF00990 Diguanylate cyclase, GGDEF domain CJ010_07765 PF00034 Cytochrome c CJ010_07765 PF03150 Di-haem cytochrome c peroxidase CJ010_07765 PF14376 Haem-binding domain CJ010_07770 PF00175 Oxidoreductase NAD-binding domain CJ010_07770 PF00970 Oxidoreductase FAD-binding domain CJ010_07775 PF03466 LysR substrate binding domain CJ010_07775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_07780 PF00939 Sodium:sulfate symporter transmembrane region CJ010_07785 PF00535 Glycosyl transferase family 2 CJ010_07785 PF07238 PilZ domain CJ010_07785 PF03552 Cellulose synthase CJ010_07800 PF02347 Glycine cleavage system P-protein CJ010_07805 PF01597 Glycine cleavage H-protein CJ010_07810 PF08669 Glycine cleavage T-protein C-terminal barrel domain CJ010_07810 PF01571 Aminomethyltransferase folate-binding domain CJ010_07850 PF07690 Major Facilitator Superfamily CJ010_07855 PF03793 PASTA domain CJ010_07855 PF00069 Protein kinase domain CJ010_07875 PF03710 Glutamate-ammonia ligase adenylyltransferase CJ010_07875 PF08335 GlnD PII-uridylyltransferase CJ010_07885 PF00795 Carbon-nitrogen hydrolase CJ010_07890 PF01523 Putative modulator of DNA gyrase CJ010_07895 PF04965 Gene 25-like lysozyme CJ010_07945 PF04717 Type VI secretion system, phage-baseplate injector CJ010_07965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJ010_07965 PF18269 T3SS EscN ATPase C-terminal domain CJ010_07975 PF14842 FliG N-terminal domain CJ010_07975 PF01706 FliG C-terminal domain CJ010_07975 PF14841 FliG middle domain CJ010_07980 PF01514 Secretory protein of YscJ/FliF family CJ010_07980 PF08345 Flagellar M-ring protein C-terminal CJ010_07985 PF00512 His Kinase A (phospho-acceptor) domain CJ010_07985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_07985 PF00989 PAS fold CJ010_07990 PF00072 Response regulator receiver domain CJ010_07990 PF02954 Bacterial regulatory protein, Fis family CJ010_07990 PF00158 Sigma-54 interaction domain CJ010_07995 PF02049 Flagellar hook-basal body complex protein FliE CJ010_08000 PF07317 Flagellar regulator YcgR CJ010_08000 PF07238 PilZ domain CJ010_08005 PF01312 FlhB HrpN YscU SpaS Family CJ010_08020 PF02561 Flagellar protein FliS CJ010_08025 PF07195 Flagellar hook-associated protein 2 C-terminus CJ010_08025 PF02465 Flagellar hook-associated protein 2 N-terminus CJ010_08030 PF03646 FlaG protein CJ010_08035 PF00700 Bacterial flagellin C-terminal helical region CJ010_08035 PF00669 Bacterial flagellin N-terminal helical region CJ010_08045 PF14307 Glycosyltransferase WbsX CJ010_08045 PF05045 Rhamnan synthesis protein F CJ010_08055 PF00669 Bacterial flagellin N-terminal helical region CJ010_08055 PF00700 Bacterial flagellin C-terminal helical region CJ010_08055 PF07196 Flagellin hook IN motif CJ010_08060 PF03707 Bacterial signalling protein N terminal repeat CJ010_08060 PF00990 Diguanylate cyclase, GGDEF domain CJ010_08060 PF00563 EAL domain CJ010_08065 PF00990 Diguanylate cyclase, GGDEF domain CJ010_08080 PF05981 CreA protein CJ010_08090 PF00990 Diguanylate cyclase, GGDEF domain CJ010_08090 PF03707 Bacterial signalling protein N terminal repeat CJ010_08090 PF00563 EAL domain CJ010_08110 PF05958 tRNA (Uracil-5-)-methyltransferase CJ010_08115 PF03831 PhnA domain CJ010_08115 PF08274 PhnA Zinc-Ribbon CJ010_08125 PF03649 Uncharacterised protein family (UPF0014) CJ010_08130 PF00005 ABC transporter CJ010_08185 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CJ010_08185 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CJ010_08195 PF00118 TCP-1/cpn60 chaperonin family CJ010_08205 PF01139 tRNA-splicing ligase RtcB CJ010_08210 PF13193 AMP-binding enzyme C-terminal domain CJ010_08210 PF00501 AMP-binding enzyme CJ010_08215 PF00676 Dehydrogenase E1 component CJ010_08220 PF02780 Transketolase, C-terminal domain CJ010_08220 PF02779 Transketolase, pyrimidine binding domain CJ010_08220 PF00364 Biotin-requiring enzyme CJ010_08225 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJ010_08235 PF13654 AAA domain CJ010_08235 PF05362 Lon protease (S16) C-terminal proteolytic domain CJ010_08245 PF03466 LysR substrate binding domain CJ010_08245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_08260 PF00672 HAMP domain CJ010_08260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_08260 PF02203 Tar ligand binding domain homologue CJ010_08265 PF03466 LysR substrate binding domain CJ010_08265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_08320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_08320 PF03466 LysR substrate binding domain CJ010_08330 PF09186 Domain of unknown function (DUF1949) CJ010_08330 PF01205 Uncharacterized protein family UPF0029 CJ010_08335 PF03466 LysR substrate binding domain CJ010_08335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_08340 PF16197 Ketoacyl-synthetase C-terminal extension CJ010_08340 PF00109 Beta-ketoacyl synthase, N-terminal domain CJ010_08340 PF08240 Alcohol dehydrogenase GroES-like domain CJ010_08340 PF00698 Acyl transferase domain CJ010_08340 PF08659 KR domain CJ010_08340 PF02801 Beta-ketoacyl synthase, C-terminal domain CJ010_08340 PF00107 Zinc-binding dehydrogenase CJ010_08340 PF00550 Phosphopantetheine attachment site CJ010_08340 PF14765 Polyketide synthase dehydratase CJ010_08350 PF01464 Transglycosylase SLT domain CJ010_08350 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ010_08355 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_08360 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_08365 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ010_08370 PF03466 LysR substrate binding domain CJ010_08370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_08375 PF12857 TOBE-like domain CJ010_08375 PF00005 ABC transporter CJ010_08380 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_08385 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_08405 PF00403 Heavy-metal-associated domain CJ010_08410 PF03597 Cytochrome oxidase maturation protein cbb3-type CJ010_08415 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJ010_08430 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_08430 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CJ010_08435 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CJ010_08435 PF12801 4Fe-4S binding domain CJ010_08435 PF13746 4Fe-4S dicluster domain CJ010_08465 PF00753 Metallo-beta-lactamase superfamily CJ010_08465 PF10996 Beta-Casp domain CJ010_08465 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CJ010_08470 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CJ010_08470 PF00561 alpha/beta hydrolase fold CJ010_08475 PF00027 Cyclic nucleotide-binding domain CJ010_08475 PF13545 Crp-like helix-turn-helix domain CJ010_08480 PF04055 Radical SAM superfamily CJ010_08480 PF06969 HemN C-terminal domain CJ010_08490 PF09278 MerR, DNA binding CJ010_08490 PF00376 MerR family regulatory protein CJ010_08495 PF00403 Heavy-metal-associated domain CJ010_08500 PF00403 Heavy-metal-associated domain CJ010_08505 PF00563 EAL domain CJ010_08505 PF00990 Diguanylate cyclase, GGDEF domain CJ010_08505 PF03707 Bacterial signalling protein N terminal repeat CJ010_08510 PF00719 Inorganic pyrophosphatase CJ010_08520 PF00795 Carbon-nitrogen hydrolase CJ010_08520 PF02540 NAD synthase CJ010_08525 PF00543 Nitrogen regulatory protein P-II CJ010_08530 PF01713 Smr domain CJ010_08535 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_08540 PF00027 Cyclic nucleotide-binding domain CJ010_08540 PF13545 Crp-like helix-turn-helix domain CJ010_08545 PF09397 Ftsk gamma domain CJ010_08545 PF17854 FtsK alpha domain CJ010_08545 PF01580 FtsK/SpoIIIE family CJ010_08545 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CJ010_08550 PF03548 Outer membrane lipoprotein carrier protein LolA CJ010_08555 PF12002 MgsA AAA+ ATPase C terminal CJ010_08555 PF16193 AAA C-terminal domain CJ010_08555 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_08565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJ010_08565 PF02403 Seryl-tRNA synthetase N-terminal domain CJ010_08570 PF00672 HAMP domain CJ010_08570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_08570 PF12729 Four helix bundle sensory module for signal transduction CJ010_08575 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_08575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJ010_08580 PF02817 e3 binding domain CJ010_08580 PF00364 Biotin-requiring enzyme CJ010_08580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJ010_08585 PF00456 Transketolase, thiamine diphosphate binding domain CJ010_08585 PF17831 Pyruvate dehydrogenase E1 component middle domain CJ010_08595 PF00989 PAS fold CJ010_08595 PF00512 His Kinase A (phospho-acceptor) domain CJ010_08595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_08600 PF00072 Response regulator receiver domain CJ010_08600 PF00196 Bacterial regulatory proteins, luxR family CJ010_08605 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CJ010_08605 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CJ010_08610 PF00731 AIR carboxylase CJ010_08615 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CJ010_08615 PF02222 ATP-grasp domain CJ010_08620 PF01300 Telomere recombination CJ010_08620 PF03481 Putative GTP-binding controlling metal-binding CJ010_08630 PF00117 Glutamine amidotransferase class-I CJ010_08630 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CJ010_08635 PF02142 MGS-like domain CJ010_08635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJ010_08635 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CJ010_08640 PF01272 Transcription elongation factor, GreA/GreB, C-term CJ010_08640 PF03449 Transcription elongation factor, N-terminal CJ010_08650 PF01985 CRS1 / YhbY (CRM) domain CJ010_08655 PF01728 FtsJ-like methyltransferase CJ010_08660 PF01434 Peptidase family M41 CJ010_08660 PF06480 FtsH Extracellular CJ010_08660 PF17862 AAA+ lid domain CJ010_08660 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_08665 PF00809 Pterin binding enzyme CJ010_08670 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJ010_08670 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJ010_08670 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJ010_08670 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJ010_08675 PF12849 PBP superfamily domain CJ010_08680 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_08685 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_08690 PF00005 ABC transporter CJ010_08695 PF02743 Cache domain CJ010_08695 PF00672 HAMP domain CJ010_08695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_08705 PF00121 Triosephosphate isomerase CJ010_08710 PF03840 Preprotein translocase SecG subunit CJ010_08720 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CJ010_08725 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJ010_08730 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CJ010_08735 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CJ010_08745 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CJ010_08745 PF10531 SLBB domain CJ010_08745 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CJ010_08750 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CJ010_08750 PF00384 Molybdopterin oxidoreductase CJ010_08750 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJ010_08755 PF00146 NADH dehydrogenase CJ010_08760 PF12838 4Fe-4S dicluster domain CJ010_08765 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CJ010_08770 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CJ010_08775 PF00361 Proton-conducting membrane transporter CJ010_08775 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CJ010_08780 PF00361 Proton-conducting membrane transporter CJ010_08780 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CJ010_08785 PF00361 Proton-conducting membrane transporter CJ010_08790 PF00293 NUDIX domain CJ010_08795 PF00317 Ribonucleotide reductase, all-alpha domain CJ010_08795 PF03477 ATP cone domain CJ010_08795 PF02867 Ribonucleotide reductase, barrel domain CJ010_08800 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CJ010_08800 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CJ010_08805 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJ010_08810 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJ010_08815 PF00374 Nickel-dependent hydrogenase CJ010_08825 PF03594 Benzoate membrane transport protein CJ010_08835 PF01545 Cation efflux family CJ010_08850 PF12697 Alpha/beta hydrolase family CJ010_08850 PF08241 Methyltransferase domain CJ010_08855 PF01053 Cys/Met metabolism PLP-dependent enzyme CJ010_08865 PF03449 Transcription elongation factor, N-terminal CJ010_08865 PF01272 Transcription elongation factor, GreA/GreB, C-term CJ010_08870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_08870 PF00183 Hsp90 protein CJ010_08880 PF00654 Voltage gated chloride channel CJ010_08890 PF00258 Flavodoxin CJ010_08890 PF01613 Flavin reductase like domain CJ010_08900 PF02861 Clp amino terminal domain, pathogenicity island component CJ010_08900 PF10431 C-terminal, D2-small domain, of ClpB protein CJ010_08900 PF17871 AAA lid domain CJ010_08900 PF07724 AAA domain (Cdc48 subfamily) CJ010_08900 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_08905 PF00034 Cytochrome c CJ010_08910 PF00034 Cytochrome c CJ010_08920 PF10576 Iron-sulfur binding domain of endonuclease III CJ010_08920 PF00730 HhH-GPD superfamily base excision DNA repair protein CJ010_08920 PF00633 Helix-hairpin-helix motif CJ010_08925 PF02508 Rnf-Nqr subunit, membrane protein CJ010_08930 PF04205 FMN-binding domain CJ010_08935 PF03116 NQR2, RnfD, RnfE family CJ010_08940 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CJ010_08940 PF10531 SLBB domain CJ010_08940 PF13375 RnfC Barrel sandwich hybrid domain CJ010_08940 PF13237 4Fe-4S dicluster domain CJ010_08945 PF04060 Putative Fe-S cluster CJ010_08950 PF02508 Rnf-Nqr subunit, membrane protein CJ010_08965 PF00990 Diguanylate cyclase, GGDEF domain CJ010_08965 PF00072 Response regulator receiver domain CJ010_08970 PF00563 EAL domain CJ010_08970 PF00990 Diguanylate cyclase, GGDEF domain CJ010_08970 PF03707 Bacterial signalling protein N terminal repeat CJ010_08975 PF05247 Flagellar transcriptional activator (FlhD) CJ010_08980 PF05280 Flagellar transcriptional activator (FlhC) CJ010_08985 PF01618 MotA/TolQ/ExbB proton channel family CJ010_08990 PF00691 OmpA family CJ010_08990 PF13677 Membrane MotB of proton-channel complex MotA/MotB CJ010_08995 PF01584 CheW-like domain CJ010_08995 PF00072 Response regulator receiver domain CJ010_08995 PF01627 Hpt domain CJ010_08995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_09000 PF02895 Signal transducing histidine kinase, homodimeric domain CJ010_09000 PF09078 CheY binding CJ010_09000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_09000 PF01627 Hpt domain CJ010_09000 PF01584 CheW-like domain CJ010_09005 PF01584 CheW-like domain CJ010_09010 PF00672 HAMP domain CJ010_09010 PF02203 Tar ligand binding domain homologue CJ010_09010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_09015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_09015 PF08447 PAS fold CJ010_09020 PF01739 CheR methyltransferase, SAM binding domain CJ010_09020 PF03705 CheR methyltransferase, all-alpha domain CJ010_09025 PF00072 Response regulator receiver domain CJ010_09025 PF01339 CheB methylesterase CJ010_09030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_09030 PF08447 PAS fold CJ010_09030 PF13426 PAS domain CJ010_09035 PF01584 CheW-like domain CJ010_09035 PF00072 Response regulator receiver domain CJ010_09040 PF00072 Response regulator receiver domain CJ010_09040 PF01584 CheW-like domain CJ010_09045 PF00072 Response regulator receiver domain CJ010_09050 PF04344 Chemotaxis phosphatase, CheZ CJ010_09055 PF07194 P2 response regulator binding domain CJ010_09055 PF01627 Hpt domain CJ010_09055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_09055 PF02895 Signal transducing histidine kinase, homodimeric domain CJ010_09055 PF01584 CheW-like domain CJ010_09070 PF04287 tRNA pseudouridine synthase C CJ010_09070 PF00849 RNA pseudouridylate synthase CJ010_09075 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CJ010_09075 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CJ010_09080 PF02601 Exonuclease VII, large subunit CJ010_09080 PF13742 OB-fold nucleic acid binding domain CJ010_09085 PF01618 MotA/TolQ/ExbB proton channel family CJ010_09090 PF02472 Biopolymer transport protein ExbD/TolR CJ010_09095 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CJ010_09100 PF03966 Trm112p-like protein CJ010_09105 PF02348 Cytidylyltransferase CJ010_09110 PF05191 Adenylate kinase, active site lid CJ010_09115 PF00365 Phosphofructokinase CJ010_09125 PF00990 Diguanylate cyclase, GGDEF domain CJ010_09125 PF08448 PAS fold CJ010_09125 PF00563 EAL domain CJ010_09130 PF02525 Flavodoxin-like fold CJ010_09140 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJ010_09155 PF01266 FAD dependent oxidoreductase CJ010_09155 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CJ010_09160 PF00149 Calcineurin-like phosphoesterase CJ010_09160 PF00565 Staphylococcal nuclease homologue CJ010_09160 PF00746 LPXTG cell wall anchor motif CJ010_09160 PF02872 5'-nucleotidase, C-terminal domain CJ010_09170 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CJ010_09170 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CJ010_09175 PF01219 Prokaryotic diacylglycerol kinase CJ010_09185 PF01336 OB-fold nucleic acid binding domain CJ010_09185 PF00152 tRNA synthetases class II (D, K and N) CJ010_09195 PF01661 Macro domain CJ010_09205 PF01152 Bacterial-like globin CJ010_09210 PF00990 Diguanylate cyclase, GGDEF domain CJ010_09210 PF03707 Bacterial signalling protein N terminal repeat CJ010_09210 PF00563 EAL domain CJ010_09215 PF00072 Response regulator receiver domain CJ010_09220 PF00989 PAS fold CJ010_09220 PF00512 His Kinase A (phospho-acceptor) domain CJ010_09220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_09220 PF13188 PAS domain CJ010_09230 PF06470 SMC proteins Flexible Hinge Domain CJ010_09230 PF02463 RecF/RecN/SMC N terminal domain CJ010_09255 PF01230 HIT domain CJ010_09275 PF00072 Response regulator receiver domain CJ010_09275 PF00196 Bacterial regulatory proteins, luxR family CJ010_09280 PF00672 HAMP domain CJ010_09280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_09280 PF07730 Histidine kinase CJ010_09285 PF17768 RecJ OB domain CJ010_09285 PF02272 DHHA1 domain CJ010_09285 PF01368 DHH family CJ010_09295 PF08497 Radical SAM N-terminal CJ010_09295 PF04055 Radical SAM superfamily CJ010_09295 PF11842 Domain of unknown function (DUF3362) CJ010_09300 PF12704 MacB-like periplasmic core domain CJ010_09300 PF02687 FtsX-like permease family CJ010_09305 PF00005 ABC transporter CJ010_09315 PF00753 Metallo-beta-lactamase superfamily CJ010_09315 PF03772 Competence protein CJ010_09325 PF14403 Circularly permuted ATP-grasp type 2 CJ010_09330 PF04168 A predicted alpha-helical domain with a conserved ER motif. CJ010_09330 PF14403 Circularly permuted ATP-grasp type 2 CJ010_09335 PF03193 RsgA GTPase CJ010_09345 PF01435 Peptidase family M48 CJ010_09350 PF00929 Exonuclease CJ010_09360 PF01197 Ribosomal protein L31 CJ010_09365 PF01207 Dihydrouridine synthase (Dus) CJ010_09370 PF05175 Methyltransferase small domain CJ010_09370 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus CJ010_09375 PF03695 Uncharacterised protein family (UPF0149) CJ010_09375 PF02810 SEC-C motif CJ010_09385 PF03692 Putative zinc- or iron-chelating domain CJ010_09415 PF00563 EAL domain CJ010_09415 PF03707 Bacterial signalling protein N terminal repeat CJ010_09415 PF00990 Diguanylate cyclase, GGDEF domain CJ010_09420 PF00694 Aconitase C-terminal domain CJ010_09420 PF00330 Aconitase family (aconitate hydratase) CJ010_09425 PF06434 Aconitate hydratase 2 N-terminus CJ010_09425 PF11791 Aconitate B N-terminal domain CJ010_09425 PF00330 Aconitase family (aconitate hydratase) CJ010_09430 PF00563 EAL domain CJ010_09430 PF00990 Diguanylate cyclase, GGDEF domain CJ010_09430 PF03707 Bacterial signalling protein N terminal repeat CJ010_09450 PF00676 Dehydrogenase E1 component CJ010_09455 PF00364 Biotin-requiring enzyme CJ010_09455 PF02780 Transketolase, C-terminal domain CJ010_09455 PF02779 Transketolase, pyrimidine binding domain CJ010_09470 PF07690 Major Facilitator Superfamily CJ010_09475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_09475 PF03466 LysR substrate binding domain CJ010_09480 PF00990 Diguanylate cyclase, GGDEF domain CJ010_09480 PF03707 Bacterial signalling protein N terminal repeat CJ010_09480 PF00563 EAL domain CJ010_09495 PF00056 lactate/malate dehydrogenase, NAD binding domain CJ010_09495 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJ010_09500 PF00392 Bacterial regulatory proteins, gntR family CJ010_09500 PF07702 UTRA domain CJ010_09515 PF02910 Fumarate reductase flavoprotein C-term CJ010_09515 PF00890 FAD binding domain CJ010_09520 PF13085 2Fe-2S iron-sulfur cluster binding domain CJ010_09525 PF03937 Flavinator of succinate dehydrogenase CJ010_09530 PF00285 Citrate synthase, C-terminal domain CJ010_09535 PF00676 Dehydrogenase E1 component CJ010_09535 PF16870 2-oxoglutarate dehydrogenase C-terminal CJ010_09535 PF16078 2-oxoglutarate dehydrogenase N-terminus CJ010_09535 PF02779 Transketolase, pyrimidine binding domain CJ010_09540 PF02817 e3 binding domain CJ010_09540 PF00364 Biotin-requiring enzyme CJ010_09540 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJ010_09545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJ010_09545 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_09550 PF11339 Protein of unknown function (DUF3141) CJ010_09555 PF03969 AFG1-like ATPase CJ010_09560 PF13307 Helicase C-terminal domain CJ010_09560 PF04851 Type III restriction enzyme, res subunit CJ010_09565 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CJ010_09570 PF03453 MoeA N-terminal region (domain I and II) CJ010_09570 PF03454 MoeA C-terminal region (domain IV) CJ010_09570 PF00994 Probable molybdopterin binding domain CJ010_09575 PF02597 ThiS family CJ010_09580 PF02391 MoaE protein CJ010_09590 PF17871 AAA lid domain CJ010_09590 PF10431 C-terminal, D2-small domain, of ClpB protein CJ010_09590 PF07724 AAA domain (Cdc48 subfamily) CJ010_09590 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_09590 PF02861 Clp amino terminal domain, pathogenicity island component CJ010_09595 PF03707 Bacterial signalling protein N terminal repeat CJ010_09595 PF00563 EAL domain CJ010_09595 PF00990 Diguanylate cyclase, GGDEF domain CJ010_09610 PF01062 Bestrophin, RFP-TM, chloride channel CJ010_09615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJ010_09620 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_09625 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_09625 PF12911 N-terminal TM domain of oligopeptide transport permease C CJ010_09630 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CJ010_09640 PF01668 SmpB protein CJ010_09645 PF03364 Polyketide cyclase / dehydrase and lipid transport CJ010_09650 PF03658 RnfH family Ubiquitin CJ010_09660 PF00478 IMP dehydrogenase / GMP reductase domain CJ010_09660 PF00571 CBS domain CJ010_09665 PF02540 NAD synthase CJ010_09665 PF00958 GMP synthase C terminal domain CJ010_09665 PF00117 Glutamine amidotransferase class-I CJ010_09670 PF00589 Phage integrase family CJ010_09670 PF14659 Phage integrase, N-terminal SAM-like domain CJ010_09670 PF13356 Arm DNA-binding domain CJ010_09775 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJ010_09775 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJ010_09780 PF00360 Phytochrome region CJ010_09780 PF08446 PAS fold CJ010_09780 PF00512 His Kinase A (phospho-acceptor) domain CJ010_09780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_09780 PF01590 GAF domain CJ010_09790 PF00512 His Kinase A (phospho-acceptor) domain CJ010_09790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_09790 PF00989 PAS fold CJ010_09795 PF14437 MafB19-like deaminase CJ010_09800 PF03734 L,D-transpeptidase catalytic domain CJ010_09800 PF01476 LysM domain CJ010_09805 PF13673 Acetyltransferase (GNAT) domain CJ010_09820 PF01571 Aminomethyltransferase folate-binding domain CJ010_09825 PF02618 YceG-like family CJ010_09830 PF02223 Thymidylate kinase CJ010_09835 PF09115 DNA polymerase III, delta subunit, C terminal CJ010_09845 PF01026 TatD related DNase CJ010_09860 PF00850 Histone deacetylase domain CJ010_09865 PF01841 Transglutaminase-like superfamily CJ010_09865 PF08379 Bacterial transglutaminase-like N-terminal region CJ010_09870 PF04168 A predicted alpha-helical domain with a conserved ER motif. CJ010_09870 PF14403 Circularly permuted ATP-grasp type 2 CJ010_09880 PF01546 Peptidase family M20/M25/M40 CJ010_09880 PF07687 Peptidase dimerisation domain CJ010_09885 PF12704 MacB-like periplasmic core domain CJ010_09885 PF02687 FtsX-like permease family CJ010_09885 PF00005 ABC transporter CJ010_09890 PF06463 Molybdenum Cofactor Synthesis C CJ010_09890 PF04055 Radical SAM superfamily CJ010_09900 PF13654 AAA domain CJ010_09900 PF05362 Lon protease (S16) C-terminal proteolytic domain CJ010_09915 PF00155 Aminotransferase class I and II CJ010_09920 PF17757 UvrB interaction domain CJ010_09920 PF12344 Ultra-violet resistance protein B CJ010_09920 PF00271 Helicase conserved C-terminal domain CJ010_09920 PF04851 Type III restriction enzyme, res subunit CJ010_09920 PF02151 UvrB/uvrC motif CJ010_09925 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJ010_09930 PF00575 S1 RNA binding domain CJ010_09930 PF12111 Polyribonucleotide phosphorylase C terminal CJ010_09930 PF10150 Ribonuclease E/G family CJ010_09935 PF00849 RNA pseudouridylate synthase CJ010_09935 PF01479 S4 domain CJ010_09940 PF13419 Haloacid dehalogenase-like hydrolase CJ010_09950 PF06965 Na+/H+ antiporter 1 CJ010_09950 PF01343 Peptidase family S49 CJ010_09955 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJ010_09960 PF02545 Maf-like protein CJ010_09965 PF02620 Large ribosomal RNA subunit accumulation protein YceD CJ010_09970 PF01783 Ribosomal L32p protein family CJ010_09975 PF02504 Fatty acid synthesis protein CJ010_09980 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJ010_09980 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJ010_09985 PF00698 Acyl transferase domain CJ010_09995 PF00550 Phosphopantetheine attachment site CJ010_10000 PF02801 Beta-ketoacyl synthase, C-terminal domain CJ010_10000 PF00109 Beta-ketoacyl synthase, N-terminal domain CJ010_10010 PF00890 FAD binding domain CJ010_10010 PF02910 Fumarate reductase flavoprotein C-term CJ010_10035 PF00069 Protein kinase domain CJ010_10035 PF03793 PASTA domain CJ010_10040 PF03781 Sulfatase-modifying factor enzyme 1 CJ010_10060 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CJ010_10060 PF02321 Outer membrane efflux protein CJ010_10065 PF16697 Inner membrane component of T3SS, cytoplasmic domain CJ010_10070 PF13533 Biotin-lipoyl like CJ010_10080 PF00664 ABC transporter transmembrane region CJ010_10080 PF00005 ABC transporter CJ010_10080 PF03412 Peptidase C39 family CJ010_10085 PF00158 Sigma-54 interaction domain CJ010_10085 PF00072 Response regulator receiver domain CJ010_10085 PF02954 Bacterial regulatory protein, Fis family CJ010_10110 PF08281 Sigma-70, region 4 CJ010_10110 PF04542 Sigma-70 region 2 CJ010_10120 PF03888 MucB/RseB N-terminal domain CJ010_10120 PF17188 MucB/RseB C-terminal domain CJ010_10130 PF13180 PDZ domain CJ010_10140 PF00679 Elongation factor G C-terminus CJ010_10140 PF00009 Elongation factor Tu GTP binding domain CJ010_10140 PF06421 GTP-binding protein LepA C-terminus CJ010_10140 PF03144 Elongation factor Tu domain 2 CJ010_10145 PF10502 Signal peptidase, peptidase S26 CJ010_10155 PF00035 Double-stranded RNA binding motif CJ010_10155 PF14622 Ribonuclease-III-like CJ010_10160 PF07650 KH domain CJ010_10160 PF01926 50S ribosome-binding GTPase CJ010_10165 PF02565 Recombination protein O C terminal CJ010_10165 PF11967 Recombination protein O N terminal CJ010_10170 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CJ010_10175 PF01648 4'-phosphopantetheinyl transferase superfamily CJ010_10180 PF00933 Glycosyl hydrolase family 3 N terminal domain CJ010_10185 PF01541 GIY-YIG catalytic domain CJ010_10185 PF08459 UvrC Helix-hairpin-helix N-terminal CJ010_10185 PF02151 UvrB/uvrC motif CJ010_10255 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_10255 PF01434 Peptidase family M41 CJ010_10255 PF17862 AAA+ lid domain CJ010_10290 PF01066 CDP-alcohol phosphatidyltransferase CJ010_10310 PF00589 Phage integrase family CJ010_10310 PF13356 Arm DNA-binding domain CJ010_10320 PF01381 Helix-turn-helix CJ010_10355 PF01026 TatD related DNase CJ010_10450 PF07508 Recombinase CJ010_10450 PF00239 Resolvase, N terminal domain CJ010_10450 PF13408 Recombinase zinc beta ribbon domain CJ010_10475 PF04002 RadC-like JAB domain CJ010_10575 PF00216 Bacterial DNA-binding protein CJ010_10600 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_10615 PF05717 IS66 Orf2 like protein CJ010_10625 PF03050 Transposase IS66 family CJ010_10625 PF13817 IS66 C-terminal element CJ010_10625 PF13007 Transposase C of IS166 homeodomain CJ010_10625 PF13005 zinc-finger binding domain of transposase IS66 CJ010_10640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_10640 PF00512 His Kinase A (phospho-acceptor) domain CJ010_10640 PF01627 Hpt domain CJ010_10640 PF00672 HAMP domain CJ010_10640 PF00072 Response regulator receiver domain CJ010_10640 PF17149 Periplasmic sensor domain found in signal transduction proteins CJ010_10670 PF06067 Domain of unknown function (DUF932) CJ010_10690 PF00899 ThiF family CJ010_10690 PF14461 Prokaryotic E2 family B CJ010_10735 PF01131 DNA topoisomerase CJ010_10735 PF01751 Toprim domain CJ010_10790 PF03466 LysR substrate binding domain CJ010_10790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_10810 PF00118 TCP-1/cpn60 chaperonin family CJ010_10820 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_10820 PF00970 Oxidoreductase FAD-binding domain CJ010_10820 PF00175 Oxidoreductase NAD-binding domain CJ010_10840 PF02964 Methane monooxygenase, hydrolase gamma chain CJ010_10845 PF02406 MmoB/DmpM family CJ010_10850 PF02332 Methane/Phenol/Toluene Hydroxylase CJ010_10855 PF02332 Methane/Phenol/Toluene Hydroxylase CJ010_10865 PF00873 AcrB/AcrD/AcrF family CJ010_10875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ010_10875 PF00529 HlyD membrane-fusion protein of T1SS CJ010_10880 PF02321 Outer membrane efflux protein CJ010_10890 PF00158 Sigma-54 interaction domain CJ010_10890 PF02954 Bacterial regulatory protein, Fis family CJ010_10890 PF01590 GAF domain CJ010_10895 PF00360 Phytochrome region CJ010_10895 PF08446 PAS fold CJ010_10895 PF00512 His Kinase A (phospho-acceptor) domain CJ010_10895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_10895 PF01590 GAF domain CJ010_10900 PF13193 AMP-binding enzyme C-terminal domain CJ010_10900 PF00501 AMP-binding enzyme CJ010_10900 PF16177 Acetyl-coenzyme A synthetase N-terminus CJ010_10915 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CJ010_10915 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CJ010_10920 PF00501 AMP-binding enzyme CJ010_10920 PF13193 AMP-binding enzyme C-terminal domain CJ010_10955 PF02461 Ammonia monooxygenase CJ010_10960 PF04744 Monooxygenase subunit B protein CJ010_10995 PF00593 TonB dependent receptor CJ010_10995 PF07715 TonB-dependent Receptor Plug Domain CJ010_11025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJ010_11025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJ010_11045 PF00378 Enoyl-CoA hydratase/isomerase CJ010_11060 PF00384 Molybdopterin oxidoreductase CJ010_11060 PF01568 Molydopterin dinucleotide binding domain CJ010_11070 PF01970 Tripartite tricarboxylate transporter TctA family CJ010_11085 PF00378 Enoyl-CoA hydratase/isomerase CJ010_11090 PF03401 Tripartite tricarboxylate transporter family receptor CJ010_11095 PF00296 Luciferase-like monooxygenase CJ010_11100 PF03401 Tripartite tricarboxylate transporter family receptor CJ010_11105 PF00596 Class II Aldolase and Adducin N-terminal domain CJ010_11110 PF02558 Ketopantoate reductase PanE/ApbA CJ010_11110 PF08546 Ketopantoate reductase PanE/ApbA C terminal CJ010_11120 PF00378 Enoyl-CoA hydratase/isomerase CJ010_11125 PF03401 Tripartite tricarboxylate transporter family receptor CJ010_11130 PF05995 Cysteine dioxygenase type I CJ010_11150 PF03466 LysR substrate binding domain CJ010_11150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_11155 PF00583 Acetyltransferase (GNAT) family CJ010_11160 PF00581 Rhodanese-like domain CJ010_11165 PF04143 Sulphur transport CJ010_11175 PF00266 Aminotransferase class-V CJ010_11190 PF00118 TCP-1/cpn60 chaperonin family CJ010_11195 PF00166 Chaperonin 10 Kd subunit CJ010_11215 PF01425 Amidase CJ010_11220 PF02374 Anion-transporting ATPase CJ010_11225 PF06953 Arsenical resistance operon trans-acting repressor ArsD CJ010_11250 PF07715 TonB-dependent Receptor Plug Domain CJ010_11250 PF00593 TonB dependent receptor CJ010_11275 PF00034 Cytochrome c CJ010_11285 PF01738 Dienelactone hydrolase family CJ010_11290 PF01322 Cytochrome C' CJ010_11300 PF02321 Outer membrane efflux protein CJ010_11305 PF00873 AcrB/AcrD/AcrF family CJ010_11310 PF00873 AcrB/AcrD/AcrF family CJ010_11315 PF13533 Biotin-lipoyl like CJ010_11325 PF02472 Biopolymer transport protein ExbD/TolR CJ010_11340 PF00158 Sigma-54 interaction domain CJ010_11345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_11345 PF03466 LysR substrate binding domain CJ010_11350 PF01381 Helix-turn-helix CJ010_11350 PF07883 Cupin domain CJ010_11355 PF00132 Bacterial transferase hexapeptide (six repeats) CJ010_11375 PF01339 CheB methylesterase CJ010_11375 PF03705 CheR methyltransferase, all-alpha domain CJ010_11375 PF08448 PAS fold CJ010_11375 PF01739 CheR methyltransferase, SAM binding domain CJ010_11380 PF00563 EAL domain CJ010_11380 PF00990 Diguanylate cyclase, GGDEF domain CJ010_11380 PF03707 Bacterial signalling protein N terminal repeat CJ010_11405 PF05433 Glycine zipper 2TM domain CJ010_11410 PF05532 CsbD-like CJ010_11440 PF04972 BON domain CJ010_11445 PF13396 Phospholipase_D-nuclease N-terminal CJ010_11445 PF13091 PLD-like domain CJ010_11450 PF01594 AI-2E family transporter CJ010_11455 PF10091 Putative glucoamylase CJ010_11455 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CJ010_11455 PF06165 Glycosyltransferase family 36 CJ010_11480 PF00196 Bacterial regulatory proteins, luxR family CJ010_11480 PF00072 Response regulator receiver domain CJ010_11485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_11485 PF00512 His Kinase A (phospho-acceptor) domain CJ010_11485 PF08448 PAS fold CJ010_11485 PF13426 PAS domain CJ010_11485 PF00072 Response regulator receiver domain CJ010_11495 PF00970 Oxidoreductase FAD-binding domain CJ010_11495 PF00175 Oxidoreductase NAD-binding domain CJ010_11495 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_11500 PF02332 Methane/Phenol/Toluene Hydroxylase CJ010_11505 PF02406 MmoB/DmpM family CJ010_11510 PF00355 Rieske [2Fe-2S] domain CJ010_11515 PF06234 Toluene-4-monooxygenase system protein B (TmoB) CJ010_11520 PF02332 Methane/Phenol/Toluene Hydroxylase CJ010_11525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_11525 PF00672 HAMP domain CJ010_11525 PF02743 Cache domain CJ010_11530 PF16527 Two-component sensor protein CpxA, periplasmic domain CJ010_11530 PF00672 HAMP domain CJ010_11530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_11530 PF00512 His Kinase A (phospho-acceptor) domain CJ010_11535 PF00072 Response regulator receiver domain CJ010_11535 PF00486 Transcriptional regulatory protein, C terminal CJ010_11540 PF02321 Outer membrane efflux protein CJ010_11550 PF00873 AcrB/AcrD/AcrF family CJ010_11555 PF07729 FCD domain CJ010_11555 PF00392 Bacterial regulatory proteins, gntR family CJ010_11560 PF00501 AMP-binding enzyme CJ010_11560 PF13193 AMP-binding enzyme C-terminal domain CJ010_11565 PF00108 Thiolase, N-terminal domain CJ010_11565 PF02803 Thiolase, C-terminal domain CJ010_11575 PF07044 Protein of unknown function (DUF1329) CJ010_11590 PF00582 Universal stress protein family CJ010_11600 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJ010_11605 PF01568 Molydopterin dinucleotide binding domain CJ010_11605 PF00384 Molybdopterin oxidoreductase CJ010_11610 PF13247 4Fe-4S dicluster domain CJ010_11620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_11620 PF17202 Single cache domain 3 CJ010_11620 PF00672 HAMP domain CJ010_11635 PF03776 Septum formation topological specificity factor MinE CJ010_11640 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJ010_11645 PF03775 Septum formation inhibitor MinC, C-terminal domain CJ010_11645 PF05209 Septum formation inhibitor MinC, N-terminal domain CJ010_11650 PF01430 Hsp33 protein CJ010_11655 PF03960 ArsC family CJ010_11660 PF17674 HHH domain CJ010_11660 PF09371 Tex-like protein N-terminal domain CJ010_11660 PF16921 Tex protein YqgF-like domain CJ010_11660 PF00575 S1 RNA binding domain CJ010_11665 PF01263 Aldose 1-epimerase CJ010_11670 PF13607 Succinyl-CoA ligase like flavodoxin domain CJ010_11670 PF00583 Acetyltransferase (GNAT) family CJ010_11670 PF13380 CoA binding domain CJ010_11675 PF00989 PAS fold CJ010_11675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_11675 PF00512 His Kinase A (phospho-acceptor) domain CJ010_11685 PF00581 Rhodanese-like domain CJ010_11690 PF02769 AIR synthase related protein, C-terminal domain CJ010_11690 PF00586 AIR synthase related protein, N-terminal domain CJ010_11695 PF13472 GDSL-like Lipase/Acylhydrolase family CJ010_11700 PF00005 ABC transporter CJ010_11710 PF00793 DAHP synthetase I family CJ010_11720 PF03707 Bacterial signalling protein N terminal repeat CJ010_11720 PF00563 EAL domain CJ010_11720 PF00990 Diguanylate cyclase, GGDEF domain CJ010_11725 PF01544 CorA-like Mg2+ transporter protein CJ010_11730 PF17757 UvrB interaction domain CJ010_11730 PF03461 TRCF domain CJ010_11730 PF00271 Helicase conserved C-terminal domain CJ010_11730 PF00270 DEAD/DEAH box helicase CJ010_11730 PF02559 CarD-like/TRCF domain CJ010_11750 PF13545 Crp-like helix-turn-helix domain CJ010_11750 PF00027 Cyclic nucleotide-binding domain CJ010_11755 PF01871 AMMECR1 CJ010_11755 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CJ010_11760 PF01875 Memo-like protein CJ010_11765 PF13194 Domain of unknown function (DUF4010) CJ010_11770 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CJ010_11775 PF02542 YgbB family CJ010_11790 PF06167 Glucose-regulated metallo-peptidase M90 CJ010_11805 PF02824 TGS domain CJ010_11805 PF04607 Region found in RelA / SpoT proteins CJ010_11805 PF13291 ACT domain CJ010_11810 PF13090 Polyphosphate kinase C-terminal domain 2 CJ010_11810 PF02503 Polyphosphate kinase middle domain CJ010_11810 PF13089 Polyphosphate kinase N-terminal domain CJ010_11810 PF17941 Polyphosphate kinase C-terminal domain 1 CJ010_11815 PF02541 Ppx/GppA phosphatase family CJ010_11820 PF02405 Permease MlaE CJ010_11825 PF00005 ABC transporter CJ010_11840 PF00501 AMP-binding enzyme CJ010_11840 PF13193 AMP-binding enzyme C-terminal domain CJ010_11845 PF00378 Enoyl-CoA hydratase/isomerase CJ010_11850 PF01026 TatD related DNase CJ010_11855 PF00440 Bacterial regulatory proteins, tetR family CJ010_11855 PF08361 MAATS-type transcriptional repressor, C-terminal region CJ010_11860 PF01012 Electron transfer flavoprotein domain CJ010_11865 PF00766 Electron transfer flavoprotein FAD-binding domain CJ010_11865 PF01012 Electron transfer flavoprotein domain CJ010_11875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJ010_11875 PF02770 Acyl-CoA dehydrogenase, middle domain CJ010_11875 PF12806 Acetyl-CoA dehydrogenase C-terminal like CJ010_11875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJ010_11890 PF03795 YCII-related domain CJ010_11895 PF04279 Intracellular septation protein A CJ010_11905 PF00512 His Kinase A (phospho-acceptor) domain CJ010_11905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_11905 PF00672 HAMP domain CJ010_11910 PF00072 Response regulator receiver domain CJ010_11910 PF00486 Transcriptional regulatory protein, C terminal CJ010_11915 PF00814 Glycoprotease family CJ010_11920 PF00583 Acetyltransferase (GNAT) family CJ010_11925 PF03167 Uracil DNA glycosylase superfamily CJ010_11930 PF07690 Major Facilitator Superfamily CJ010_11935 PF03466 LysR substrate binding domain CJ010_11935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_11940 PF18073 Rubredoxin metal binding domain CJ010_11945 PF03466 LysR substrate binding domain CJ010_11945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_11950 PF03313 Serine dehydratase alpha chain CJ010_11950 PF03315 Serine dehydratase beta chain CJ010_11955 PF00375 Sodium:dicarboxylate symporter family CJ010_11960 PF01212 Beta-eliminating lyase CJ010_11965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJ010_11970 PF00311 Phosphoenolpyruvate carboxylase CJ010_11975 PF00113 Enolase, C-terminal TIM barrel domain CJ010_11975 PF03952 Enolase, N-terminal domain CJ010_11980 PF00171 Aldehyde dehydrogenase family CJ010_11985 PF02887 Pyruvate kinase, alpha/beta domain CJ010_11985 PF00224 Pyruvate kinase, barrel domain CJ010_11990 PF01263 Aldose 1-epimerase CJ010_11995 PF01081 KDPG and KHG aldolase CJ010_12000 PF00920 Dehydratase family CJ010_12005 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CJ010_12005 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CJ010_12010 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CJ010_12015 PF01418 Helix-turn-helix domain, rpiR family CJ010_12015 PF01380 SIS domain CJ010_12020 PF00342 Phosphoglucose isomerase CJ010_12025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJ010_12025 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJ010_12030 PF00294 pfkB family carbohydrate kinase CJ010_12035 PF13407 Periplasmic binding protein domain CJ010_12040 PF02653 Branched-chain amino acid transport system / permease component CJ010_12045 PF00005 ABC transporter CJ010_12050 PF00480 ROK family CJ010_12050 PF01047 MarR family CJ010_12055 PF02685 Glucokinase CJ010_12060 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CJ010_12060 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CJ010_12065 PF02685 Glucokinase CJ010_12065 PF01418 Helix-turn-helix domain, rpiR family CJ010_12065 PF01380 SIS domain CJ010_12070 PF02264 LamB porin CJ010_12070 PF11471 Maltoporin periplasmic N-terminal extension CJ010_12075 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CJ010_12075 PF00356 Bacterial regulatory proteins, lacI family CJ010_12085 PF16657 Maltogenic Amylase, C-terminal domain CJ010_12085 PF00128 Alpha amylase, catalytic domain CJ010_12090 PF01547 Bacterial extracellular solute-binding protein CJ010_12095 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_12100 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_12105 PF00005 ABC transporter CJ010_12105 PF08402 TOBE domain CJ010_12110 PF01204 Trehalase CJ010_12120 PF03466 LysR substrate binding domain CJ010_12120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_12125 PF00106 short chain dehydrogenase CJ010_12130 PF00106 short chain dehydrogenase CJ010_12135 PF07690 Major Facilitator Superfamily CJ010_12140 PF03466 LysR substrate binding domain CJ010_12140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_12150 PF07044 Protein of unknown function (DUF1329) CJ010_12170 PF17200 Single Cache domain 2 CJ010_12170 PF00672 HAMP domain CJ010_12170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_12175 PF02954 Bacterial regulatory protein, Fis family CJ010_12175 PF06505 Activator of aromatic catabolism CJ010_12175 PF02830 V4R domain CJ010_12175 PF00158 Sigma-54 interaction domain CJ010_12180 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_12185 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJ010_12190 PF06099 Phenol hydroxylase subunit CJ010_12195 PF02332 Methane/Phenol/Toluene Hydroxylase CJ010_12200 PF02406 MmoB/DmpM family CJ010_12205 PF04945 YHS domain CJ010_12205 PF02332 Methane/Phenol/Toluene Hydroxylase CJ010_12210 PF04663 Phenol hydroxylase conserved region CJ010_12215 PF00970 Oxidoreductase FAD-binding domain CJ010_12215 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_12215 PF00175 Oxidoreductase NAD-binding domain CJ010_12225 PF13276 HTH-like domain CJ010_12225 PF13333 Integrase core domain CJ010_12225 PF00665 Integrase core domain CJ010_12230 PF02371 Transposase IS116/IS110/IS902 family CJ010_12230 PF01548 Transposase CJ010_12235 PF01966 HD domain CJ010_12245 PF00171 Aldehyde dehydrogenase family CJ010_12250 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJ010_12260 PF01361 Tautomerase enzyme CJ010_12265 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CJ010_12265 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJ010_12270 PF00682 HMGL-like CJ010_12270 PF07836 DmpG-like communication domain CJ010_12275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJ010_12290 PF10605 3HB-oligomer hydrolase (3HBOH) CJ010_12295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_12300 PF00107 Zinc-binding dehydrogenase CJ010_12300 PF08240 Alcohol dehydrogenase GroES-like domain CJ010_12305 PF00561 alpha/beta hydrolase fold CJ010_12315 PF00990 Diguanylate cyclase, GGDEF domain CJ010_12315 PF03707 Bacterial signalling protein N terminal repeat CJ010_12315 PF00563 EAL domain CJ010_12320 PF00849 RNA pseudouridylate synthase CJ010_12330 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CJ010_12335 PF00483 Nucleotidyl transferase CJ010_12340 PF04321 RmlD substrate binding domain CJ010_12345 PF16363 GDP-mannose 4,6 dehydratase CJ010_12350 PF00593 TonB dependent receptor CJ010_12350 PF07715 TonB-dependent Receptor Plug Domain CJ010_12390 PF01593 Flavin containing amine oxidoreductase CJ010_12395 PF00246 Zinc carboxypeptidase CJ010_12395 PF18027 Cytosolic carboxypeptidase N-terminal domain CJ010_12400 PF03883 Peroxide stress protein YaaA CJ010_12405 PF00202 Aminotransferase class-III CJ010_12410 PF00155 Aminotransferase class I and II CJ010_12415 PF12697 Alpha/beta hydrolase family CJ010_12420 PF08241 Methyltransferase domain CJ010_12430 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJ010_12430 PF00588 SpoU rRNA Methylase family CJ010_12440 PF01351 Ribonuclease HII CJ010_12445 PF02684 Lipid-A-disaccharide synthetase CJ010_12450 PF00132 Bacterial transferase hexapeptide (six repeats) CJ010_12450 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CJ010_12455 PF07977 FabA-like domain CJ010_12460 PF00132 Bacterial transferase hexapeptide (six repeats) CJ010_12460 PF14602 Hexapeptide repeat of succinyl-transferase CJ010_12460 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CJ010_12470 PF01103 Surface antigen CJ010_12470 PF07244 Surface antigen variable number repeat CJ010_12475 PF13180 PDZ domain CJ010_12475 PF02163 Peptidase family M50 CJ010_12475 PF17820 PDZ domain CJ010_12480 PF13288 DXP reductoisomerase C-terminal domain CJ010_12480 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CJ010_12480 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CJ010_12490 PF01255 Putative undecaprenyl diphosphate synthase CJ010_12495 PF01765 Ribosome recycling factor CJ010_12500 PF00696 Amino acid kinase family CJ010_12505 PF00889 Elongation factor TS CJ010_12510 PF00318 Ribosomal protein S2 CJ010_12515 PF00557 Metallopeptidase family M24 CJ010_12520 PF08335 GlnD PII-uridylyltransferase CJ010_12520 PF01966 HD domain CJ010_12525 PF03350 Uncharacterized protein family, UPF0114 CJ010_12535 PF02954 Bacterial regulatory protein, Fis family CJ010_12535 PF00072 Response regulator receiver domain CJ010_12535 PF00158 Sigma-54 interaction domain CJ010_12540 PF02743 Cache domain CJ010_12540 PF00512 His Kinase A (phospho-acceptor) domain CJ010_12540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_12555 PF16868 NMT1-like family CJ010_12560 PF01266 FAD dependent oxidoreductase CJ010_12565 PF00171 Aldehyde dehydrogenase family CJ010_12570 PF00766 Electron transfer flavoprotein FAD-binding domain CJ010_12570 PF01012 Electron transfer flavoprotein domain CJ010_12575 PF01012 Electron transfer flavoprotein domain CJ010_12580 PF02515 CoA-transferase family III CJ010_12585 PF02770 Acyl-CoA dehydrogenase, middle domain CJ010_12585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJ010_12585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJ010_12590 PF03466 LysR substrate binding domain CJ010_12590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_12605 PF00378 Enoyl-CoA hydratase/isomerase CJ010_12620 PF02770 Acyl-CoA dehydrogenase, middle domain CJ010_12620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJ010_12620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJ010_12625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJ010_12625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJ010_12625 PF02770 Acyl-CoA dehydrogenase, middle domain CJ010_12630 PF00378 Enoyl-CoA hydratase/isomerase CJ010_12635 PF00106 short chain dehydrogenase CJ010_12640 PF01494 FAD binding domain CJ010_12645 PF01047 MarR family CJ010_12650 PF14525 AraC-binding-like domain CJ010_12650 PF12833 Helix-turn-helix domain CJ010_12665 PF01613 Flavin reductase like domain CJ010_12670 PF05661 Protein of unknown function (DUF808) CJ010_12675 PF00732 GMC oxidoreductase CJ010_12675 PF05199 GMC oxidoreductase CJ010_12685 PF01613 Flavin reductase like domain CJ010_12690 PF00296 Luciferase-like monooxygenase CJ010_12695 PF12833 Helix-turn-helix domain CJ010_12700 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CJ010_12705 PF01568 Molydopterin dinucleotide binding domain CJ010_12705 PF00384 Molybdopterin oxidoreductase CJ010_12705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJ010_12710 PF13247 4Fe-4S dicluster domain CJ010_12720 PF12833 Helix-turn-helix domain CJ010_12750 PF01425 Amidase CJ010_12755 PF01425 Amidase CJ010_12760 PF00561 alpha/beta hydrolase fold CJ010_12775 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_12775 PF00175 Oxidoreductase NAD-binding domain CJ010_12775 PF00970 Oxidoreductase FAD-binding domain CJ010_12780 PF00355 Rieske [2Fe-2S] domain CJ010_12780 PF11723 Homotrimeric ring hydroxylase CJ010_12785 PF01613 Flavin reductase like domain CJ010_12795 PF12833 Helix-turn-helix domain CJ010_12805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJ010_12815 PF00561 alpha/beta hydrolase fold CJ010_12820 PF00392 Bacterial regulatory proteins, gntR family CJ010_12820 PF07729 FCD domain CJ010_12830 PF08240 Alcohol dehydrogenase GroES-like domain CJ010_12830 PF00107 Zinc-binding dehydrogenase CJ010_12835 PF07836 DmpG-like communication domain CJ010_12835 PF00682 HMGL-like CJ010_12840 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CJ010_12840 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJ010_12845 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJ010_12850 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CJ010_12855 PF00561 alpha/beta hydrolase fold CJ010_12855 PF00364 Biotin-requiring enzyme CJ010_12860 PF00355 Rieske [2Fe-2S] domain CJ010_12860 PF11723 Homotrimeric ring hydroxylase CJ010_12865 PF04199 Putative cyclase CJ010_12880 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_12885 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CJ010_12885 PF00355 Rieske [2Fe-2S] domain CJ010_12890 PF00866 Ring hydroxylating beta subunit CJ010_12895 PF00501 AMP-binding enzyme CJ010_12895 PF13193 AMP-binding enzyme C-terminal domain CJ010_12905 PF00106 short chain dehydrogenase CJ010_12910 PF04199 Putative cyclase CJ010_12930 PF00005 ABC transporter CJ010_12930 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_12935 PF00005 ABC transporter CJ010_12940 PF02558 Ketopantoate reductase PanE/ApbA CJ010_12940 PF08546 Ketopantoate reductase PanE/ApbA C terminal CJ010_12945 PF00596 Class II Aldolase and Adducin N-terminal domain CJ010_12950 PF00501 AMP-binding enzyme CJ010_12950 PF13193 AMP-binding enzyme C-terminal domain CJ010_12960 PF02653 Branched-chain amino acid transport system / permease component CJ010_12965 PF11862 Domain of unknown function (DUF3382) CJ010_12965 PF02653 Branched-chain amino acid transport system / permease component CJ010_12970 PF00005 ABC transporter CJ010_12970 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_12975 PF00005 ABC transporter CJ010_12990 PF01048 Phosphorylase superfamily CJ010_13000 PF12833 Helix-turn-helix domain CJ010_13000 PF12852 Cupin CJ010_13005 PF00106 short chain dehydrogenase CJ010_13015 PF00483 Nucleotidyl transferase CJ010_13020 PF03120 NAD-dependent DNA ligase OB-fold domain CJ010_13020 PF01653 NAD-dependent DNA ligase adenylation domain CJ010_13020 PF00533 BRCA1 C Terminus (BRCT) domain CJ010_13020 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CJ010_13020 PF12826 Helix-hairpin-helix motif CJ010_13025 PF04354 ZipA, C-terminal FtsZ-binding domain CJ010_13030 PF02463 RecF/RecN/SMC N terminal domain CJ010_13035 PF00155 Aminotransferase class I and II CJ010_13040 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CJ010_13040 PF14602 Hexapeptide repeat of succinyl-transferase CJ010_13040 PF00132 Bacterial transferase hexapeptide (six repeats) CJ010_13045 PF00437 Type II/IV secretion system protein CJ010_13050 PF07687 Peptidase dimerisation domain CJ010_13050 PF01546 Peptidase family M20/M25/M40 CJ010_13055 PF05175 Methyltransferase small domain CJ010_13060 PF00072 Response regulator receiver domain CJ010_13065 PF04384 Iron-sulphur cluster assembly CJ010_13070 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_13075 PF00012 Hsp70 protein CJ010_13080 PF07743 HSCB C-terminal oligomerisation domain CJ010_13085 PF01521 Iron-sulphur cluster biosynthesis CJ010_13090 PF01592 NifU-like N terminal domain CJ010_13095 PF00266 Aminotransferase class-V CJ010_13100 PF00266 Aminotransferase class-V CJ010_13105 PF02082 Transcriptional regulator CJ010_13110 PF00132 Bacterial transferase hexapeptide (six repeats) CJ010_13115 PF00588 SpoU rRNA Methylase family CJ010_13120 PF00459 Inositol monophosphatase family CJ010_13125 PF00488 MutS domain V CJ010_13125 PF05188 MutS domain II CJ010_13125 PF05190 MutS family domain IV CJ010_13125 PF01624 MutS domain I CJ010_13125 PF05192 MutS domain III CJ010_13135 PF00929 Exonuclease CJ010_13140 PF00075 RNase H CJ010_13145 PF08241 Methyltransferase domain CJ010_13150 PF00753 Metallo-beta-lactamase superfamily CJ010_13150 PF16123 Hydroxyacylglutathione hydrolase C-terminus CJ010_13155 PF00072 Response regulator receiver domain CJ010_13155 PF00196 Bacterial regulatory proteins, luxR family CJ010_13160 PF00990 Diguanylate cyclase, GGDEF domain CJ010_13160 PF00360 Phytochrome region CJ010_13160 PF01590 GAF domain CJ010_13160 PF00563 EAL domain CJ010_13165 PF01476 LysM domain CJ010_13165 PF01464 Transglycosylase SLT domain CJ010_13170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJ010_13170 PF00005 ABC transporter CJ010_13175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJ010_13180 PF00578 AhpC/TSA family CJ010_13185 PF01726 LexA DNA binding domain CJ010_13185 PF00717 Peptidase S24-like CJ010_13195 PF01554 MatE CJ010_13200 PF03960 ArsC family CJ010_13230 PF00216 Bacterial DNA-binding protein CJ010_13235 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_13235 PF05362 Lon protease (S16) C-terminal proteolytic domain CJ010_13235 PF02190 ATP-dependent protease La (LON) substrate-binding domain CJ010_13240 PF06689 ClpX C4-type zinc finger CJ010_13240 PF10431 C-terminal, D2-small domain, of ClpB protein CJ010_13240 PF07724 AAA domain (Cdc48 subfamily) CJ010_13245 PF00574 Clp protease CJ010_13250 PF05697 Bacterial trigger factor protein (TF) CJ010_13250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJ010_13250 PF05698 Bacterial trigger factor protein (TF) C-terminus CJ010_13255 PF06798 PrkA serine protein kinase C-terminal domain CJ010_13255 PF08298 PrkA AAA domain CJ010_13260 PF04285 Protein of unknown function (DUF444) CJ010_13265 PF04293 SpoVR like protein CJ010_13270 PF03853 YjeF-related protein N-terminus CJ010_13270 PF01256 Carbohydrate kinase CJ010_13275 PF00072 Response regulator receiver domain CJ010_13285 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CJ010_13285 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CJ010_13290 PF00291 Pyridoxal-phosphate dependent enzyme CJ010_13290 PF14821 Threonine synthase N terminus CJ010_13295 PF01842 ACT domain CJ010_13295 PF03447 Homoserine dehydrogenase, NAD binding domain CJ010_13295 PF00742 Homoserine dehydrogenase CJ010_13300 PF00155 Aminotransferase class I and II CJ010_13310 PF07690 Major Facilitator Superfamily CJ010_13315 PF00483 Nucleotidyl transferase CJ010_13315 PF01050 Mannose-6-phosphate isomerase CJ010_13320 PF00196 Bacterial regulatory proteins, luxR family CJ010_13330 PF07963 Prokaryotic N-terminal methylation motif CJ010_13330 PF00114 Pilin (bacterial filament) CJ010_13335 PF07963 Prokaryotic N-terminal methylation motif CJ010_13335 PF08334 Type II secretion system (T2SS), protein G CJ010_13340 PF00263 Bacterial type II and III secretion system protein CJ010_13340 PF03958 Bacterial type II/III secretion system short domain CJ010_13365 PF00437 Type II/IV secretion system protein CJ010_13365 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CJ010_13370 PF00482 Type II secretion system (T2SS), protein F CJ010_13375 PF07963 Prokaryotic N-terminal methylation motif CJ010_13375 PF08334 Type II secretion system (T2SS), protein G CJ010_13380 PF01464 Transglycosylase SLT domain CJ010_13380 PF10145 Phage-related minor tail protein CJ010_13380 PF01551 Peptidase family M23 CJ010_13390 PF00171 Aldehyde dehydrogenase family CJ010_13395 PF00202 Aminotransferase class-III CJ010_13400 PF00011 Hsp20/alpha crystallin family CJ010_13405 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_13405 PF17862 AAA+ lid domain CJ010_13405 PF01434 Peptidase family M41 CJ010_13425 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJ010_13430 PF03725 3' exoribonuclease family, domain 2 CJ010_13430 PF00575 S1 RNA binding domain CJ010_13430 PF01138 3' exoribonuclease family, domain 1 CJ010_13430 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CJ010_13430 PF00013 KH domain CJ010_13435 PF00312 Ribosomal protein S15 CJ010_13440 PF16198 tRNA pseudouridylate synthase B C-terminal domain CJ010_13440 PF01509 TruB family pseudouridylate synthase (N terminal domain) CJ010_13440 PF09157 Pseudouridine synthase II TruB, C-terminal CJ010_13445 PF02033 Ribosome-binding factor A CJ010_13450 PF04760 Translation initiation factor IF-2, N-terminal region CJ010_13450 PF00009 Elongation factor Tu GTP binding domain CJ010_13450 PF08364 Bacterial translation initiation factor IF-2 associated region CJ010_13450 PF11987 Translation-initiation factor 2 CJ010_13455 PF08529 NusA N-terminal domain CJ010_13455 PF13184 NusA-like KH domain CJ010_13460 PF02576 RimP N-terminal domain CJ010_13460 PF17384 RimP C-terminal SH3 domain CJ010_13465 PF01479 S4 domain CJ010_13465 PF00849 RNA pseudouridylate synthase CJ010_13470 PF04079 Segregation and condensation complex subunit ScpB CJ010_13475 PF02616 Segregation and condensation protein ScpA CJ010_13480 PF02163 Peptidase family M50 CJ010_13485 PF01300 Telomere recombination CJ010_13490 PF02811 PHP domain CJ010_13495 PF00561 alpha/beta hydrolase fold CJ010_13505 PF00171 Aldehyde dehydrogenase family CJ010_13510 PF01926 50S ribosome-binding GTPase CJ010_13515 PF00313 'Cold-shock' DNA-binding domain CJ010_13520 PF00271 Helicase conserved C-terminal domain CJ010_13520 PF00270 DEAD/DEAH box helicase CJ010_13520 PF03880 DbpA RNA binding domain CJ010_13530 PF01636 Phosphotransferase enzyme family CJ010_13540 PF07152 YaeQ protein CJ010_13565 PF02190 ATP-dependent protease La (LON) substrate-binding domain CJ010_13565 PF05362 Lon protease (S16) C-terminal proteolytic domain CJ010_13565 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_13570 PF01227 GTP cyclohydrolase I CJ010_13580 PF01384 Phosphate transporter family CJ010_13590 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CJ010_13595 PF00132 Bacterial transferase hexapeptide (six repeats) CJ010_13610 PF00877 NlpC/P60 family CJ010_13615 PF01380 SIS domain CJ010_13615 PF00571 CBS domain CJ010_13620 PF04977 Septum formation initiator CJ010_13625 PF00113 Enolase, C-terminal TIM barrel domain CJ010_13625 PF03952 Enolase, N-terminal domain CJ010_13630 PF00793 DAHP synthetase I family CJ010_13635 PF06418 CTP synthase N-terminus CJ010_13635 PF00117 Glutamine amidotransferase class-I CJ010_13645 PF00501 AMP-binding enzyme CJ010_13645 PF13193 AMP-binding enzyme C-terminal domain CJ010_13650 PF03061 Thioesterase superfamily CJ010_13665 PF07715 TonB-dependent Receptor Plug Domain CJ010_13665 PF00593 TonB dependent receptor CJ010_13700 PF02769 AIR synthase related protein, C-terminal domain CJ010_13700 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CJ010_13700 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CJ010_13715 PF00535 Glycosyl transferase family 2 CJ010_13720 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CJ010_13725 PF01569 PAP2 superfamily CJ010_13740 PF01551 Peptidase family M23 CJ010_13740 PF01476 LysM domain CJ010_13740 PF08525 Opacity-associated protein A N-terminal motif CJ010_13745 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CJ010_13745 PF02896 PEP-utilising enzyme, TIM barrel domain CJ010_13745 PF00391 PEP-utilising enzyme, mobile domain CJ010_13750 PF03618 Kinase/pyrophosphorylase CJ010_13760 PF01641 SelR domain CJ010_13765 PF00672 HAMP domain CJ010_13765 PF16591 Helical bimodular sensor domain CJ010_13765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_13770 PF00108 Thiolase, N-terminal domain CJ010_13770 PF02803 Thiolase, C-terminal domain CJ010_13775 PF03186 CobD/Cbib protein CJ010_13775 PF17113 Regulatory signalling modulator protein AmpE CJ010_13780 PF00293 NUDIX domain CJ010_13805 PF07963 Prokaryotic N-terminal methylation motif CJ010_13805 PF00114 Pilin (bacterial filament) CJ010_13810 PF00114 Pilin (bacterial filament) CJ010_13810 PF07963 Prokaryotic N-terminal methylation motif CJ010_13825 PF00175 Oxidoreductase NAD-binding domain CJ010_13825 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_13825 PF00970 Oxidoreductase FAD-binding domain CJ010_13835 PF04461 Protein of unknown function (DUF520) CJ010_13840 PF06865 Pyrimidine/purine nucleoside phosphorylase CJ010_13850 PF00764 Arginosuccinate synthase CJ010_13855 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJ010_13855 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJ010_13860 PF00202 Aminotransferase class-III CJ010_13870 PF01649 Ribosomal protein S20 CJ010_13875 PF03023 Lipid II flippase MurJ CJ010_13880 PF01161 Phosphatidylethanolamine-binding protein CJ010_13890 PF01053 Cys/Met metabolism PLP-dependent enzyme CJ010_13895 PF01329 Pterin 4 alpha carbinolamine dehydratase CJ010_13915 PF00578 AhpC/TSA family CJ010_13920 PF02562 PhoH-like protein CJ010_13920 PF13638 PIN domain CJ010_13925 PF08447 PAS fold CJ010_13925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_13930 PF00072 Response regulator receiver domain CJ010_13945 PF00877 NlpC/P60 family CJ010_13955 PF13416 Bacterial extracellular solute-binding protein CJ010_13960 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_13965 PF00005 ABC transporter CJ010_13965 PF08402 TOBE domain CJ010_13970 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CJ010_13975 PF04376 Arginine-tRNA-protein transferase, N terminus CJ010_13975 PF04377 Arginine-tRNA-protein transferase, C terminus CJ010_13980 PF01180 Dihydroorotate dehydrogenase CJ010_13990 PF01799 [2Fe-2S] binding domain CJ010_13990 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_13995 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJ010_13995 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CJ010_14020 PF02608 ABC transporter substrate-binding protein PnrA-like CJ010_14025 PF07715 TonB-dependent Receptor Plug Domain CJ010_14025 PF00593 TonB dependent receptor CJ010_14040 PF01891 Cobalt uptake substrate-specific transmembrane region CJ010_14050 PF00005 ABC transporter CJ010_14055 PF01979 Amidohydrolase family CJ010_14060 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CJ010_14065 PF00990 Diguanylate cyclase, GGDEF domain CJ010_14065 PF00563 EAL domain CJ010_14065 PF03707 Bacterial signalling protein N terminal repeat CJ010_14070 PF00512 His Kinase A (phospho-acceptor) domain CJ010_14070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_14070 PF02743 Cache domain CJ010_14075 PF00072 Response regulator receiver domain CJ010_14080 PF00989 PAS fold CJ010_14080 PF00512 His Kinase A (phospho-acceptor) domain CJ010_14080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_14085 PF00072 Response regulator receiver domain CJ010_14090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_14090 PF00672 HAMP domain CJ010_14100 PF03707 Bacterial signalling protein N terminal repeat CJ010_14100 PF00990 Diguanylate cyclase, GGDEF domain CJ010_14100 PF00563 EAL domain CJ010_14105 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJ010_14110 PF01979 Amidohydrolase family CJ010_14125 PF00072 Response regulator receiver domain CJ010_14125 PF00486 Transcriptional regulatory protein, C terminal CJ010_14145 PF00072 Response regulator receiver domain CJ010_14145 PF00196 Bacterial regulatory proteins, luxR family CJ010_14150 PF08448 PAS fold CJ010_14150 PF13426 PAS domain CJ010_14150 PF00072 Response regulator receiver domain CJ010_14150 PF00512 His Kinase A (phospho-acceptor) domain CJ010_14150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_14155 PF00593 TonB dependent receptor CJ010_14155 PF07715 TonB-dependent Receptor Plug Domain CJ010_14165 PF00970 Oxidoreductase FAD-binding domain CJ010_14165 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_14165 PF00175 Oxidoreductase NAD-binding domain CJ010_14170 PF00483 Nucleotidyl transferase CJ010_14175 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CJ010_14175 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CJ010_14175 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CJ010_14195 PF00150 Cellulase (glycosyl hydrolase family 5) CJ010_14200 PF13439 Glycosyltransferase Family 4 CJ010_14200 PF00534 Glycosyl transferases group 1 CJ010_14220 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJ010_14220 PF13807 G-rich domain on putative tyrosine kinase CJ010_14220 PF02706 Chain length determinant protein CJ010_14230 PF10531 SLBB domain CJ010_14230 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CJ010_14230 PF02563 Polysaccharide biosynthesis/export protein CJ010_14250 PF02397 Bacterial sugar transferase CJ010_14260 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_14265 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_14270 PF00005 ABC transporter CJ010_14280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJ010_14280 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJ010_14285 PF02558 Ketopantoate reductase PanE/ApbA CJ010_14285 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain CJ010_14295 PF00171 Aldehyde dehydrogenase family CJ010_14310 PF03176 MMPL family CJ010_14320 PF07044 Protein of unknown function (DUF1329) CJ010_14330 PF02975 Methylamine dehydrogenase, L chain CJ010_14335 PF00578 AhpC/TSA family CJ010_14345 PF06433 Methylamine dehydrogenase heavy chain (MADH) CJ010_14350 PF14525 AraC-binding-like domain CJ010_14350 PF12833 Helix-turn-helix domain CJ010_14355 PF07729 FCD domain CJ010_14355 PF00392 Bacterial regulatory proteins, gntR family CJ010_14365 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_14370 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_14375 PF00005 ABC transporter CJ010_14390 PF13847 Methyltransferase domain CJ010_14405 PF00892 EamA-like transporter family CJ010_14415 PF01145 SPFH domain / Band 7 family CJ010_14420 PF13426 PAS domain CJ010_14420 PF08447 PAS fold CJ010_14420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_14425 PF00156 Phosphoribosyl transferase domain CJ010_14435 PF02705 K+ potassium transporter CJ010_14440 PF07859 alpha/beta hydrolase fold CJ010_14450 PF07722 Peptidase C26 CJ010_14455 PF04107 Glutamate-cysteine ligase family 2(GCS2) CJ010_14470 PF00072 Response regulator receiver domain CJ010_14470 PF00486 Transcriptional regulatory protein, C terminal CJ010_14475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_14475 PF08918 PhoQ Sensor CJ010_14480 PF07694 5TMR of 5TMR-LYT CJ010_14480 PF00990 Diguanylate cyclase, GGDEF domain CJ010_14490 PF00581 Rhodanese-like domain CJ010_14500 PF00258 Flavodoxin CJ010_14520 PF01323 DSBA-like thioredoxin domain CJ010_14525 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_14530 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJ010_14545 PF01966 HD domain CJ010_14570 PF03466 LysR substrate binding domain CJ010_14570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_14580 PF07690 Major Facilitator Superfamily CJ010_14585 PF00576 HIUase/Transthyretin family CJ010_14590 PF00576 HIUase/Transthyretin family CJ010_14600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_14600 PF03466 LysR substrate binding domain CJ010_14610 PF00589 Phage integrase family CJ010_14630 PF11740 Plasmid replication region DNA-binding N-term CJ010_14685 PF00571 CBS domain CJ010_14685 PF01380 SIS domain CJ010_14695 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_14705 PF12833 Helix-turn-helix domain CJ010_14705 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJ010_14705 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJ010_14705 PF02805 Metal binding domain of Ada CJ010_14710 PF13532 2OG-Fe(II) oxygenase superfamily CJ010_14715 PF13426 PAS domain CJ010_14715 PF08447 PAS fold CJ010_14715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_14720 PF08212 Lipocalin-like domain CJ010_14750 PF04542 Sigma-70 region 2 CJ010_14750 PF08281 Sigma-70, region 4 CJ010_14775 PF01329 Pterin 4 alpha carbinolamine dehydratase CJ010_14790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJ010_14790 PF02770 Acyl-CoA dehydrogenase, middle domain CJ010_14790 PF18158 Adaptive response protein AidB N-terminal domain CJ010_14800 PF00437 Type II/IV secretion system protein CJ010_14810 PF01527 Transposase CJ010_14820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_14820 PF03466 LysR substrate binding domain CJ010_14825 PF02525 Flavodoxin-like fold CJ010_14830 PF16657 Maltogenic Amylase, C-terminal domain CJ010_14830 PF00128 Alpha amylase, catalytic domain CJ010_14840 PF06472 ABC transporter transmembrane region 2 CJ010_14840 PF00005 ABC transporter CJ010_14845 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CJ010_14855 PF00005 ABC transporter CJ010_14855 PF00664 ABC transporter transmembrane region CJ010_14885 PF00534 Glycosyl transferases group 1 CJ010_14885 PF13439 Glycosyltransferase Family 4 CJ010_14890 PF13439 Glycosyltransferase Family 4 CJ010_14890 PF00534 Glycosyl transferases group 1 CJ010_14895 PF01522 Polysaccharide deacetylase CJ010_14900 PF00171 Aldehyde dehydrogenase family CJ010_14905 PF13360 PQQ-like domain CJ010_14905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_14915 PF01590 GAF domain CJ010_14915 PF00158 Sigma-54 interaction domain CJ010_14915 PF02954 Bacterial regulatory protein, Fis family CJ010_14925 PF00563 EAL domain CJ010_14925 PF00990 Diguanylate cyclase, GGDEF domain CJ010_14925 PF03707 Bacterial signalling protein N terminal repeat CJ010_14940 PF01545 Cation efflux family CJ010_14940 PF16916 Dimerisation domain of Zinc Transporter CJ010_14965 PF00005 ABC transporter CJ010_14970 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_14975 PF09084 NMT1/THI5 like CJ010_14980 PF00296 Luciferase-like monooxygenase CJ010_14985 PF09084 NMT1/THI5 like CJ010_14990 PF03459 TOBE domain CJ010_15005 PF00005 ABC transporter CJ010_15010 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_15040 PF00291 Pyridoxal-phosphate dependent enzyme CJ010_15045 PF00593 TonB dependent receptor CJ010_15045 PF07715 TonB-dependent Receptor Plug Domain CJ010_15055 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CJ010_15055 PF00512 His Kinase A (phospho-acceptor) domain CJ010_15055 PF01627 Hpt domain CJ010_15055 PF00072 Response regulator receiver domain CJ010_15055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_15055 PF00672 HAMP domain CJ010_15060 PF00360 Phytochrome region CJ010_15060 PF01590 GAF domain CJ010_15060 PF00563 EAL domain CJ010_15060 PF00990 Diguanylate cyclase, GGDEF domain CJ010_15075 PF00141 Peroxidase CJ010_15090 PF01037 Lrp/AsnC ligand binding domain CJ010_15095 PF17158 Membrane-associated sensor, integral membrane domain CJ010_15095 PF00990 Diguanylate cyclase, GGDEF domain CJ010_15100 PF00474 Sodium:solute symporter family CJ010_15105 PF00929 Exonuclease CJ010_15110 PF00072 Response regulator receiver domain CJ010_15110 PF00486 Transcriptional regulatory protein, C terminal CJ010_15115 PF00989 PAS fold CJ010_15115 PF00512 His Kinase A (phospho-acceptor) domain CJ010_15115 PF18698 Histidine kinase sensor domain CJ010_15115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_15115 PF00672 HAMP domain CJ010_15125 PF00501 AMP-binding enzyme CJ010_15125 PF16177 Acetyl-coenzyme A synthetase N-terminus CJ010_15125 PF13193 AMP-binding enzyme C-terminal domain CJ010_15145 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJ010_15145 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CJ010_15150 PF03466 LysR substrate binding domain CJ010_15150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_15155 PF07883 Cupin domain CJ010_15160 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJ010_15165 PF01494 FAD binding domain CJ010_15170 PF13417 Glutathione S-transferase, N-terminal domain CJ010_15175 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_15185 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJ010_15195 PF01361 Tautomerase enzyme CJ010_15205 PF07836 DmpG-like communication domain CJ010_15205 PF00682 HMGL-like CJ010_15210 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJ010_15210 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CJ010_15215 PF00106 short chain dehydrogenase CJ010_15225 PF00171 Aldehyde dehydrogenase family CJ010_15230 PF03928 Haem-degrading CJ010_15235 PF07729 FCD domain CJ010_15235 PF00392 Bacterial regulatory proteins, gntR family CJ010_15240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJ010_15245 PF00970 Oxidoreductase FAD-binding domain CJ010_15245 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_15245 PF00175 Oxidoreductase NAD-binding domain CJ010_15250 PF04663 Phenol hydroxylase conserved region CJ010_15255 PF04945 YHS domain CJ010_15255 PF02332 Methane/Phenol/Toluene Hydroxylase CJ010_15260 PF02406 MmoB/DmpM family CJ010_15265 PF02332 Methane/Phenol/Toluene Hydroxylase CJ010_15270 PF06099 Phenol hydroxylase subunit CJ010_15275 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_15280 PF06505 Activator of aromatic catabolism CJ010_15280 PF02830 V4R domain CJ010_15280 PF00158 Sigma-54 interaction domain CJ010_15280 PF02954 Bacterial regulatory protein, Fis family CJ010_15285 PF00501 AMP-binding enzyme CJ010_15295 PF01494 FAD binding domain CJ010_15335 PF13458 Periplasmic binding protein CJ010_15340 PF02653 Branched-chain amino acid transport system / permease component CJ010_15350 PF00005 ABC transporter CJ010_15350 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_15355 PF00005 ABC transporter CJ010_15360 PF00171 Aldehyde dehydrogenase family CJ010_15370 PF00392 Bacterial regulatory proteins, gntR family CJ010_15370 PF00155 Aminotransferase class I and II CJ010_15375 PF00486 Transcriptional regulatory protein, C terminal CJ010_15375 PF00072 Response regulator receiver domain CJ010_15380 PF00989 PAS fold CJ010_15380 PF00512 His Kinase A (phospho-acceptor) domain CJ010_15380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_15385 PF01070 FMN-dependent dehydrogenase CJ010_15400 PF00171 Aldehyde dehydrogenase family CJ010_15405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJ010_15405 PF00205 Thiamine pyrophosphate enzyme, central domain CJ010_15405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJ010_15410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_15410 PF03466 LysR substrate binding domain CJ010_15415 PF12801 4Fe-4S binding domain CJ010_15415 PF13746 4Fe-4S dicluster domain CJ010_15415 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CJ010_15420 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJ010_15420 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJ010_15430 PF01654 Cytochrome bd terminal oxidase subunit I CJ010_15435 PF02322 Cytochrome bd terminal oxidase subunit II CJ010_15450 PF00392 Bacterial regulatory proteins, gntR family CJ010_15450 PF00155 Aminotransferase class I and II CJ010_15460 PF00795 Carbon-nitrogen hydrolase CJ010_15475 PF02769 AIR synthase related protein, C-terminal domain CJ010_15475 PF00586 AIR synthase related protein, N-terminal domain CJ010_15500 PF00440 Bacterial regulatory proteins, tetR family CJ010_15500 PF17754 MftR C-terminal domain CJ010_15520 PF01926 50S ribosome-binding GTPase CJ010_15520 PF13167 GTP-binding GTPase N-terminal CJ010_15520 PF16360 GTP-binding GTPase Middle Region CJ010_15540 PF05717 IS66 Orf2 like protein CJ010_15545 PF03050 Transposase IS66 family CJ010_15545 PF13005 zinc-finger binding domain of transposase IS66 CJ010_15545 PF13817 IS66 C-terminal element CJ010_15545 PF13007 Transposase C of IS166 homeodomain CJ010_15570 PF00206 Lyase CJ010_15570 PF10415 Fumarase C C-terminus CJ010_15575 PF00375 Sodium:dicarboxylate symporter family CJ010_15580 PF01177 Asp/Glu/Hydantoin racemase CJ010_15585 PF03466 LysR substrate binding domain CJ010_15585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_15590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJ010_15590 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_15595 PF03466 LysR substrate binding domain CJ010_15595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_15605 PF00535 Glycosyl transferase family 2 CJ010_15605 PF02709 N-terminal domain of galactosyltransferase CJ010_15610 PF16363 GDP-mannose 4,6 dehydratase CJ010_15615 PF00563 EAL domain CJ010_15615 PF00990 Diguanylate cyclase, GGDEF domain CJ010_15615 PF03707 Bacterial signalling protein N terminal repeat CJ010_15630 PF05114 Protein of unknown function (DUF692) CJ010_15655 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_15660 PF00355 Rieske [2Fe-2S] domain CJ010_15665 PF00175 Oxidoreductase NAD-binding domain CJ010_15665 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_15670 PF00593 TonB dependent receptor CJ010_15670 PF07715 TonB-dependent Receptor Plug Domain CJ010_15675 PF02080 TrkA-C domain CJ010_15675 PF03600 Citrate transporter CJ010_15680 PF00085 Thioredoxin CJ010_15685 PF01012 Electron transfer flavoprotein domain CJ010_15685 PF00766 Electron transfer flavoprotein FAD-binding domain CJ010_15690 PF01012 Electron transfer flavoprotein domain CJ010_15700 PF02770 Acyl-CoA dehydrogenase, middle domain CJ010_15700 PF12806 Acetyl-CoA dehydrogenase C-terminal like CJ010_15700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJ010_15700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJ010_15710 PF00106 short chain dehydrogenase CJ010_15715 PF00108 Thiolase, N-terminal domain CJ010_15715 PF02803 Thiolase, C-terminal domain CJ010_15720 PF00378 Enoyl-CoA hydratase/isomerase CJ010_15730 PF00005 ABC transporter CJ010_15735 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_15735 PF00005 ABC transporter CJ010_15745 PF17932 Tetracyclin repressor-like, C-terminal domain CJ010_15745 PF00440 Bacterial regulatory proteins, tetR family CJ010_15755 PF03176 MMPL family CJ010_15765 PF07044 Protein of unknown function (DUF1329) CJ010_15775 PF00034 Cytochrome c CJ010_15780 PF01593 Flavin containing amine oxidoreductase CJ010_15795 PF01384 Phosphate transporter family CJ010_15800 PF03358 NADPH-dependent FMN reductase CJ010_15805 PF01758 Sodium Bile acid symporter family CJ010_15815 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJ010_15825 PF01022 Bacterial regulatory protein, arsR family CJ010_15835 PF04954 Siderophore-interacting protein CJ010_15835 PF08021 Siderophore-interacting FAD-binding domain CJ010_15840 PF00689 Cation transporting ATPase, C-terminus CJ010_15840 PF00690 Cation transporter/ATPase, N-terminus CJ010_15865 PF00672 HAMP domain CJ010_15865 PF12729 Four helix bundle sensory module for signal transduction CJ010_15865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_15875 PF00355 Rieske [2Fe-2S] domain CJ010_15880 PF13577 SnoaL-like domain CJ010_15885 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CJ010_15885 PF00355 Rieske [2Fe-2S] domain CJ010_15890 PF00175 Oxidoreductase NAD-binding domain CJ010_15890 PF00970 Oxidoreductase FAD-binding domain CJ010_15890 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_15895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_15895 PF03466 LysR substrate binding domain CJ010_15900 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJ010_15915 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CJ010_15925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_15925 PF03466 LysR substrate binding domain CJ010_15930 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_15935 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_15940 PF02311 AraC-like ligand binding domain CJ010_15940 PF12833 Helix-turn-helix domain CJ010_15950 PF00890 FAD binding domain CJ010_15965 PF13609 Gram-negative porin CJ010_15975 PF00067 Cytochrome P450 CJ010_15980 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_15985 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_15985 PF14759 Reductase C-terminal CJ010_16010 PF01654 Cytochrome bd terminal oxidase subunit I CJ010_16015 PF02322 Cytochrome bd terminal oxidase subunit II CJ010_16030 PF00753 Metallo-beta-lactamase superfamily CJ010_16035 PF00117 Glutamine amidotransferase class-I CJ010_16050 PF00248 Aldo/keto reductase family CJ010_16055 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJ010_16060 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CJ010_16065 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit CJ010_16070 PF04909 Amidohydrolase CJ010_16080 PF03737 Aldolase/RraA CJ010_16085 PF04909 Amidohydrolase CJ010_16090 PF04303 PrpF protein CJ010_16095 PF07690 Major Facilitator Superfamily CJ010_16100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_16100 PF03466 LysR substrate binding domain CJ010_16105 PF00884 Sulfatase CJ010_16110 PF00672 HAMP domain CJ010_16110 PF12729 Four helix bundle sensory module for signal transduction CJ010_16110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_16115 PF04261 Dyp-type peroxidase family CJ010_16120 PF01743 Poly A polymerase head domain CJ010_16120 PF12627 Probable RNA and SrmB- binding site of polymerase A CJ010_16120 PF01966 HD domain CJ010_16130 PF00795 Carbon-nitrogen hydrolase CJ010_16195 PF01949 Protein of unknown function DUF99 CJ010_16200 PF12852 Cupin CJ010_16200 PF12833 Helix-turn-helix domain CJ010_16205 PF01209 ubiE/COQ5 methyltransferase family CJ010_16215 PF04542 Sigma-70 region 2 CJ010_16215 PF08281 Sigma-70, region 4 CJ010_16225 PF03466 LysR substrate binding domain CJ010_16225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_16230 PF00529 HlyD membrane-fusion protein of T1SS CJ010_16230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ010_16235 PF00873 AcrB/AcrD/AcrF family CJ010_16240 PF02321 Outer membrane efflux protein CJ010_16255 PF12833 Helix-turn-helix domain CJ010_16260 PF03707 Bacterial signalling protein N terminal repeat CJ010_16260 PF00990 Diguanylate cyclase, GGDEF domain CJ010_16260 PF00563 EAL domain CJ010_16265 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CJ010_16265 PF00072 Response regulator receiver domain CJ010_16265 PF01627 Hpt domain CJ010_16265 PF00672 HAMP domain CJ010_16265 PF00512 His Kinase A (phospho-acceptor) domain CJ010_16265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_16270 PF01113 Dihydrodipicolinate reductase, N-terminus CJ010_16270 PF05173 Dihydrodipicolinate reductase, C-terminus CJ010_16275 PF04355 SmpA / OmlA family CJ010_16280 PF01475 Ferric uptake regulator family CJ010_16285 PF02463 RecF/RecN/SMC N terminal domain CJ010_16290 PF01513 ATP-NAD kinase CJ010_16295 PF01628 HrcA protein C terminal domain CJ010_16295 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CJ010_16300 PF00762 Ferrochelatase CJ010_16305 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CJ010_16315 PF03793 PASTA domain CJ010_16315 PF00069 Protein kinase domain CJ010_16320 PF01979 Amidohydrolase family CJ010_16325 PF00691 OmpA family CJ010_16340 PF00005 ABC transporter CJ010_16340 PF00664 ABC transporter transmembrane region CJ010_16345 PF00563 EAL domain CJ010_16345 PF00990 Diguanylate cyclase, GGDEF domain CJ010_16345 PF03707 Bacterial signalling protein N terminal repeat CJ010_16350 PF01979 Amidohydrolase family CJ010_16355 PF00491 Arginase family CJ010_16360 PF01175 Urocanase Rossmann-like domain CJ010_16360 PF17391 Urocanase N-terminal domain CJ010_16360 PF17392 Urocanase C-terminal domain CJ010_16365 PF00221 Aromatic amino acid lyase CJ010_16370 PF00392 Bacterial regulatory proteins, gntR family CJ010_16370 PF07702 UTRA domain CJ010_16425 PF03466 LysR substrate binding domain CJ010_16425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_16430 PF04303 PrpF protein CJ010_16435 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_16440 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CJ010_16445 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJ010_16455 PF02515 CoA-transferase family III CJ010_16460 PF03328 HpcH/HpaI aldolase/citrate lyase family CJ010_16465 PF00206 Lyase CJ010_16465 PF10397 Adenylosuccinate lyase C-terminus CJ010_16470 PF03466 LysR substrate binding domain CJ010_16470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_16475 PF14537 Cytochrome c3 CJ010_16475 PF00890 FAD binding domain CJ010_16490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJ010_16490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJ010_16495 PF04303 PrpF protein CJ010_16505 PF01970 Tripartite tricarboxylate transporter TctA family CJ010_16515 PF00171 Aldehyde dehydrogenase family CJ010_16520 PF00171 Aldehyde dehydrogenase family CJ010_16530 PF01494 FAD binding domain CJ010_16540 PF12697 Alpha/beta hydrolase family CJ010_16550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJ010_16565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJ010_16565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJ010_16580 PF03466 LysR substrate binding domain CJ010_16580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_16585 PF00892 EamA-like transporter family CJ010_16600 PF02558 Ketopantoate reductase PanE/ApbA CJ010_16600 PF08546 Ketopantoate reductase PanE/ApbA C terminal CJ010_16605 PF00596 Class II Aldolase and Adducin N-terminal domain CJ010_16610 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_16615 PF04444 Catechol dioxygenase N terminus CJ010_16615 PF00775 Dioxygenase CJ010_16620 PF12833 Helix-turn-helix domain CJ010_16620 PF14525 AraC-binding-like domain CJ010_16630 PF00171 Aldehyde dehydrogenase family CJ010_16635 PF03328 HpcH/HpaI aldolase/citrate lyase family CJ010_16640 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJ010_16650 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CJ010_16655 PF00171 Aldehyde dehydrogenase family CJ010_16660 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJ010_16665 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJ010_16670 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJ010_16680 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_16685 PF01047 MarR family CJ010_16695 PF00593 TonB dependent receptor CJ010_16695 PF07715 TonB-dependent Receptor Plug Domain CJ010_16705 PF13426 PAS domain CJ010_16705 PF00990 Diguanylate cyclase, GGDEF domain CJ010_16705 PF05231 MASE1 CJ010_16705 PF08448 PAS fold CJ010_16705 PF00563 EAL domain CJ010_16705 PF08447 PAS fold CJ010_16725 PF13493 Domain of unknown function (DUF4118) CJ010_16725 PF08447 PAS fold CJ010_16725 PF13426 PAS domain CJ010_16725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_16725 PF00989 PAS fold CJ010_16725 PF00512 His Kinase A (phospho-acceptor) domain CJ010_16730 PF00196 Bacterial regulatory proteins, luxR family CJ010_16730 PF00072 Response regulator receiver domain CJ010_16740 PF00561 alpha/beta hydrolase fold CJ010_16745 PF07969 Amidohydrolase family CJ010_16760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_16760 PF00512 His Kinase A (phospho-acceptor) domain CJ010_16760 PF00072 Response regulator receiver domain CJ010_16760 PF09456 RcsC Alpha-Beta-Loop (ABL) CJ010_16770 PF13419 Haloacid dehalogenase-like hydrolase CJ010_16775 PF00990 Diguanylate cyclase, GGDEF domain CJ010_16775 PF00072 Response regulator receiver domain CJ010_16780 PF00376 MerR family regulatory protein CJ010_16780 PF09278 MerR, DNA binding CJ010_16785 PF01209 ubiE/COQ5 methyltransferase family CJ010_16805 PF01548 Transposase CJ010_16805 PF02371 Transposase IS116/IS110/IS902 family CJ010_16815 PF13333 Integrase core domain CJ010_16815 PF13276 HTH-like domain CJ010_16815 PF00665 Integrase core domain CJ010_16840 PF01548 Transposase CJ010_16840 PF02371 Transposase IS116/IS110/IS902 family CJ010_16855 PF11965 Domain of unknown function (DUF3479) CJ010_16855 PF02514 CobN/Magnesium Chelatase CJ010_16870 PF13649 Methyltransferase domain CJ010_16885 PF13419 Haloacid dehalogenase-like hydrolase CJ010_16890 PF01738 Dienelactone hydrolase family CJ010_16900 PF03572 Peptidase family S41 CJ010_16900 PF17804 Tail specific protease N-terminal domain CJ010_16900 PF11818 C-terminal domain of tail specific protease (DUF3340) CJ010_16900 PF00595 PDZ domain CJ010_16905 PF01965 DJ-1/PfpI family CJ010_16905 PF12833 Helix-turn-helix domain CJ010_16910 PF00857 Isochorismatase family CJ010_16920 PF00884 Sulfatase CJ010_16935 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_16960 PF02082 Transcriptional regulator CJ010_16965 PF01458 Uncharacterized protein family (UPF0051) CJ010_16970 PF00005 ABC transporter CJ010_16975 PF01458 Uncharacterized protein family (UPF0051) CJ010_16980 PF00266 Aminotransferase class-V CJ010_16985 PF01592 NifU-like N terminal domain CJ010_16990 PF01883 Iron-sulfur cluster assembly protein CJ010_17000 PF04336 Acyl carrier protein phosphodiesterase CJ010_17010 PF07690 Major Facilitator Superfamily CJ010_17015 PF03466 LysR substrate binding domain CJ010_17015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_17020 PF18029 Glyoxalase-like domain CJ010_17030 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CJ010_17035 PF00970 Oxidoreductase FAD-binding domain CJ010_17035 PF00175 Oxidoreductase NAD-binding domain CJ010_17060 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_17065 PF03328 HpcH/HpaI aldolase/citrate lyase family CJ010_17075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJ010_17075 PF02770 Acyl-CoA dehydrogenase, middle domain CJ010_17075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJ010_17085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_17085 PF03466 LysR substrate binding domain CJ010_17095 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJ010_17095 PF00578 AhpC/TSA family CJ010_17115 PF01292 Prokaryotic cytochrome b561 CJ010_17125 PF13230 Glutamine amidotransferases class-II CJ010_17130 PF00005 ABC transporter CJ010_17130 PF09383 NIL domain CJ010_17135 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_17140 PF03180 NLPA lipoprotein CJ010_17145 PF02230 Phospholipase/Carboxylesterase CJ010_17160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJ010_17175 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJ010_17175 PF02154 Flagellar motor switch protein FliM CJ010_17180 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJ010_17180 PF16973 Flagellar motor switch protein FliN N-terminal CJ010_17185 PF04347 Flagellar biosynthesis protein, FliO CJ010_17190 PF00813 FliP family CJ010_17195 PF01313 Bacterial export proteins, family 3 CJ010_17200 PF01311 Bacterial export proteins, family 1 CJ010_17210 PF00669 Bacterial flagellin N-terminal helical region CJ010_17215 PF00460 Flagella basal body rod protein CJ010_17215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ010_17220 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CJ010_17220 PF10135 Rod binding protein CJ010_17225 PF02119 Flagellar P-ring protein CJ010_17230 PF02107 Flagellar L-ring protein CJ010_17235 PF00460 Flagella basal body rod protein CJ010_17235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ010_17240 PF00460 Flagella basal body rod protein CJ010_17240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ010_17245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ010_17245 PF07559 Flagellar basal body protein FlaE CJ010_17245 PF00460 Flagella basal body rod protein CJ010_17255 PF00460 Flagella basal body rod protein CJ010_17255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJ010_17260 PF00460 Flagella basal body rod protein CJ010_17265 PF13144 Chaperone for flagella basal body P-ring formation CJ010_17265 PF17656 FlgA N-terminal domain CJ010_17285 PF00486 Transcriptional regulatory protein, C terminal CJ010_17285 PF00072 Response regulator receiver domain CJ010_17290 PF16527 Two-component sensor protein CpxA, periplasmic domain CJ010_17290 PF00672 HAMP domain CJ010_17290 PF00512 His Kinase A (phospho-acceptor) domain CJ010_17290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_17300 PF00563 EAL domain CJ010_17300 PF00990 Diguanylate cyclase, GGDEF domain CJ010_17300 PF08447 PAS fold CJ010_17300 PF08448 PAS fold CJ010_17305 PF00072 Response regulator receiver domain CJ010_17305 PF00196 Bacterial regulatory proteins, luxR family CJ010_17310 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CJ010_17310 PF01266 FAD dependent oxidoreductase CJ010_17315 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJ010_17315 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJ010_17330 PF00581 Rhodanese-like domain CJ010_17335 PF01177 Asp/Glu/Hydantoin racemase CJ010_17340 PF01479 S4 domain CJ010_17340 PF00579 tRNA synthetases class I (W and Y) CJ010_17345 PF01551 Peptidase family M23 CJ010_17345 PF01476 LysM domain CJ010_17345 PF08525 Opacity-associated protein A N-terminal motif CJ010_17350 PF01521 Iron-sulphur cluster biosynthesis CJ010_17360 PF00380 Ribosomal protein S9/S16 CJ010_17365 PF00572 Ribosomal protein L13 CJ010_17370 PF02566 OsmC-like protein CJ010_17375 PF03232 Ubiquinone biosynthesis protein COQ7 CJ010_17395 PF02915 Rubrerythrin CJ010_17405 PF00293 NUDIX domain CJ010_17410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJ010_17410 PF03129 Anticodon binding domain CJ010_17410 PF04073 Aminoacyl-tRNA editing domain CJ010_17415 PF01464 Transglycosylase SLT domain CJ010_17415 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CJ010_17425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_17425 PF00512 His Kinase A (phospho-acceptor) domain CJ010_17435 PF00158 Sigma-54 interaction domain CJ010_17435 PF00072 Response regulator receiver domain CJ010_17440 PF04055 Radical SAM superfamily CJ010_17455 PF00293 NUDIX domain CJ010_17455 PF13344 Haloacid dehalogenase-like hydrolase CJ010_17460 PF01063 Amino-transferase class IV CJ010_17475 PF00561 alpha/beta hydrolase fold CJ010_17480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJ010_17480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJ010_17480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJ010_17480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJ010_17490 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJ010_17490 PF01411 tRNA synthetases class II (A) CJ010_17490 PF02272 DHHA1 domain CJ010_17495 PF01923 Cobalamin adenosyltransferase CJ010_17500 PF04055 Radical SAM superfamily CJ010_17500 PF02579 Dinitrogenase iron-molybdenum cofactor CJ010_17515 PF00005 ABC transporter CJ010_17515 PF00664 ABC transporter transmembrane region CJ010_17525 PF02646 RmuC family CJ010_17530 PF00793 DAHP synthetase I family CJ010_17540 PF00174 Oxidoreductase molybdopterin binding domain CJ010_17545 PF01794 Ferric reductase like transmembrane component CJ010_17550 PF00994 Probable molybdopterin binding domain CJ010_17555 PF04751 Protein of unknown function (DUF615) CJ010_17560 PF01523 Putative modulator of DNA gyrase CJ010_17565 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_17570 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJ010_17580 PF00300 Histidine phosphatase superfamily (branch 1) CJ010_17585 PF13493 Domain of unknown function (DUF4118) CJ010_17585 PF13492 GAF domain CJ010_17585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_17585 PF00512 His Kinase A (phospho-acceptor) domain CJ010_17585 PF02702 Osmosensitive K+ channel His kinase sensor domain CJ010_17590 PF00072 Response regulator receiver domain CJ010_17590 PF00486 Transcriptional regulatory protein, C terminal CJ010_17595 PF00464 Serine hydroxymethyltransferase CJ010_17600 PF03477 ATP cone domain CJ010_17605 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CJ010_17605 PF01872 RibD C-terminal domain CJ010_17610 PF00899 ThiF family CJ010_17620 PF13180 PDZ domain CJ010_17620 PF03572 Peptidase family S41 CJ010_17625 PF01551 Peptidase family M23 CJ010_17630 PF00300 Histidine phosphatase superfamily (branch 1) CJ010_17640 PF00581 Rhodanese-like domain CJ010_17645 PF00462 Glutaredoxin CJ010_17650 PF02556 Preprotein translocase subunit SecB CJ010_17660 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CJ010_17660 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CJ010_17665 PF00588 SpoU rRNA Methylase family CJ010_17670 PF00156 Phosphoribosyl transferase domain CJ010_17675 PF04055 Radical SAM superfamily CJ010_17675 PF06968 Biotin and Thiamin Synthesis associated domain CJ010_17680 PF08241 Methyltransferase domain CJ010_17695 PF00490 Delta-aminolevulinic acid dehydratase CJ010_17700 PF01926 50S ribosome-binding GTPase CJ010_17705 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_17710 PF04305 Protein of unknown function (DUF455) CJ010_17715 PF03453 MoeA N-terminal region (domain I and II) CJ010_17715 PF00994 Probable molybdopterin binding domain CJ010_17715 PF03454 MoeA C-terminal region (domain IV) CJ010_17720 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CJ010_17725 PF01895 PhoU domain CJ010_17730 PF04362 Bacterial Fe(2+) trafficking CJ010_17735 PF13426 PAS domain CJ010_17735 PF08447 PAS fold CJ010_17735 PF08448 PAS fold CJ010_17735 PF00563 EAL domain CJ010_17735 PF05231 MASE1 CJ010_17735 PF00990 Diguanylate cyclase, GGDEF domain CJ010_17740 PF00696 Amino acid kinase family CJ010_17740 PF00583 Acetyltransferase (GNAT) family CJ010_17745 PF03976 Polyphosphate kinase 2 (PPK2) CJ010_17750 PF04452 RNA methyltransferase CJ010_17755 PF00459 Inositol monophosphatase family CJ010_17765 PF00485 Phosphoribulokinase / Uridine kinase family CJ010_17770 PF00456 Transketolase, thiamine diphosphate binding domain CJ010_17770 PF02780 Transketolase, C-terminal domain CJ010_17770 PF02779 Transketolase, pyrimidine binding domain CJ010_17775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJ010_17775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CJ010_17785 PF00162 Phosphoglycerate kinase CJ010_17790 PF05724 Thiopurine S-methyltransferase (TPMT) CJ010_17800 PF00224 Pyruvate kinase, barrel domain CJ010_17800 PF02887 Pyruvate kinase, alpha/beta domain CJ010_17805 PF01116 Fructose-bisphosphate aldolase class-II CJ010_17820 PF00083 Sugar (and other) transporter CJ010_17820 PF07690 Major Facilitator Superfamily CJ010_17830 PF00171 Aldehyde dehydrogenase family CJ010_17835 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJ010_17845 PF04542 Sigma-70 region 2 CJ010_17845 PF08281 Sigma-70, region 4 CJ010_17860 PF00005 ABC transporter CJ010_17865 PF01032 FecCD transport family CJ010_17875 PF00593 TonB dependent receptor CJ010_17875 PF07715 TonB-dependent Receptor Plug Domain CJ010_17890 PF00106 short chain dehydrogenase CJ010_17895 PF00668 Condensation domain CJ010_17895 PF00501 AMP-binding enzyme CJ010_17895 PF13193 AMP-binding enzyme C-terminal domain CJ010_17895 PF00975 Thioesterase domain CJ010_17895 PF00550 Phosphopantetheine attachment site CJ010_17905 PF00550 Phosphopantetheine attachment site CJ010_17905 PF00857 Isochorismatase family CJ010_17910 PF00501 AMP-binding enzyme CJ010_17910 PF13193 AMP-binding enzyme C-terminal domain CJ010_17915 PF00425 chorismate binding enzyme CJ010_17930 PF13519 von Willebrand factor type A domain CJ010_17930 PF07584 Aerotolerance regulator N-terminal CJ010_17935 PF01882 Protein of unknown function DUF58 CJ010_17940 PF17863 AAA lid domain CJ010_17940 PF07726 ATPase family associated with various cellular activities (AAA) CJ010_17945 PF00595 PDZ domain CJ010_17950 PF07584 Aerotolerance regulator N-terminal CJ010_17950 PF00092 von Willebrand factor type A domain CJ010_17955 PF00375 Sodium:dicarboxylate symporter family CJ010_17960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_17960 PF03466 LysR substrate binding domain CJ010_17970 PF03707 Bacterial signalling protein N terminal repeat CJ010_17970 PF00990 Diguanylate cyclase, GGDEF domain CJ010_17970 PF00563 EAL domain CJ010_17975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_17975 PF03466 LysR substrate binding domain CJ010_17980 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CJ010_17985 PF01292 Prokaryotic cytochrome b561 CJ010_17995 PF04264 YceI-like domain CJ010_18005 PF01259 SAICAR synthetase CJ010_18020 PF01432 Peptidase family M3 CJ010_18030 PF00909 Ammonium Transporter Family CJ010_18030 PF00672 HAMP domain CJ010_18035 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_18040 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_18050 PF08402 TOBE domain CJ010_18050 PF00005 ABC transporter CJ010_18055 PF07729 FCD domain CJ010_18055 PF00392 Bacterial regulatory proteins, gntR family CJ010_18070 PF13545 Crp-like helix-turn-helix domain CJ010_18070 PF00027 Cyclic nucleotide-binding domain CJ010_18080 PF00398 Ribosomal RNA adenine dimethylase CJ010_18085 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CJ010_18090 PF00639 PPIC-type PPIASE domain CJ010_18090 PF09312 SurA N-terminal domain CJ010_18095 PF04453 LPS transport system D CJ010_18095 PF03968 OstA-like protein CJ010_18100 PF01636 Phosphotransferase enzyme family CJ010_18105 PF00483 Nucleotidyl transferase CJ010_18110 PF00557 Metallopeptidase family M24 CJ010_18110 PF05195 Aminopeptidase P, N-terminal domain CJ010_18115 PF01494 FAD binding domain CJ010_18120 PF01207 Dihydrouridine synthase (Dus) CJ010_18125 PF02954 Bacterial regulatory protein, Fis family CJ010_18130 PF01808 AICARFT/IMPCHase bienzyme CJ010_18130 PF02142 MGS-like domain CJ010_18135 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CJ010_18135 PF02844 Phosphoribosylglycinamide synthetase, N domain CJ010_18135 PF02843 Phosphoribosylglycinamide synthetase, C domain CJ010_18140 PF01218 Coproporphyrinogen III oxidase CJ010_18145 PF01740 STAS domain CJ010_18145 PF00916 Sulfate permease family CJ010_18150 PF00886 Ribosomal protein S16 CJ010_18155 PF05239 PRC-barrel domain CJ010_18155 PF01782 RimM N-terminal domain CJ010_18160 PF01746 tRNA (Guanine-1)-methyltransferase CJ010_18165 PF01245 Ribosomal protein L19 CJ010_18175 PF03739 Lipopolysaccharide export system permease LptF/LptG CJ010_18180 PF00883 Cytosol aminopeptidase family, catalytic domain CJ010_18180 PF02789 Cytosol aminopeptidase family, N-terminal domain CJ010_18195 PF10458 Valyl tRNA synthetase tRNA binding arm CJ010_18195 PF08264 Anticodon-binding domain of tRNA CJ010_18195 PF00133 tRNA synthetases class I (I, L, M and V) CJ010_18200 PF00114 Pilin (bacterial filament) CJ010_18200 PF07963 Prokaryotic N-terminal methylation motif CJ010_18220 PF05567 Neisseria PilC beta-propeller domain CJ010_18225 PF07963 Prokaryotic N-terminal methylation motif CJ010_18225 PF00114 Pilin (bacterial filament) CJ010_18240 PF00005 ABC transporter CJ010_18245 PF13533 Biotin-lipoyl like CJ010_18250 PF02321 Outer membrane efflux protein CJ010_18250 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CJ010_18255 PF01206 Sulfurtransferase TusA CJ010_18260 PF01435 Peptidase family M48 CJ010_18265 PF01967 MoaC family CJ010_18275 PF00005 ABC transporter CJ010_18280 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_18305 PF04324 BFD-like [2Fe-2S] binding domain CJ010_18305 PF18267 Rubredoxin NAD+ reductase C-terminal domain CJ010_18305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_18305 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJ010_18310 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CJ010_18310 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain CJ010_18320 PF00158 Sigma-54 interaction domain CJ010_18320 PF02954 Bacterial regulatory protein, Fis family CJ010_18320 PF01590 GAF domain CJ010_18355 PF00171 Aldehyde dehydrogenase family CJ010_18360 PF13426 PAS domain CJ010_18360 PF02954 Bacterial regulatory protein, Fis family CJ010_18360 PF00158 Sigma-54 interaction domain CJ010_18385 PF01209 ubiE/COQ5 methyltransferase family CJ010_18395 PF00512 His Kinase A (phospho-acceptor) domain CJ010_18395 PF00672 HAMP domain CJ010_18395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_18400 PF00072 Response regulator receiver domain CJ010_18400 PF00486 Transcriptional regulatory protein, C terminal CJ010_18420 PF07731 Multicopper oxidase CJ010_18420 PF07732 Multicopper oxidase CJ010_18420 PF00394 Multicopper oxidase CJ010_18425 PF00127 Copper binding proteins, plastocyanin/azurin family CJ010_18440 PF00529 HlyD membrane-fusion protein of T1SS CJ010_18440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ010_18445 PF00873 AcrB/AcrD/AcrF family CJ010_18455 PF04945 YHS domain CJ010_18460 PF01209 ubiE/COQ5 methyltransferase family CJ010_18480 PF03264 NapC/NirT cytochrome c family, N-terminal region CJ010_18495 PF07690 Major Facilitator Superfamily CJ010_18505 PF09828 Chromate resistance exported protein CJ010_18510 PF17954 Quercetinase C-terminal cupin domain CJ010_18510 PF02678 Pirin CJ010_18515 PF07681 DoxX CJ010_18520 PF03466 LysR substrate binding domain CJ010_18520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_18525 PF03358 NADPH-dependent FMN reductase CJ010_18535 PF00196 Bacterial regulatory proteins, luxR family CJ010_18535 PF00072 Response regulator receiver domain CJ010_18540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_18540 PF07730 Histidine kinase CJ010_18540 PF05231 MASE1 CJ010_18545 PF01011 PQQ enzyme repeat CJ010_18545 PF13360 PQQ-like domain CJ010_18580 PF07730 Histidine kinase CJ010_18580 PF05231 MASE1 CJ010_18580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_18585 PF00072 Response regulator receiver domain CJ010_18585 PF00196 Bacterial regulatory proteins, luxR family CJ010_18590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_18590 PF00672 HAMP domain CJ010_18595 PF03466 LysR substrate binding domain CJ010_18595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_18600 PF16957 Malonate decarboxylase, alpha subunit, transporter CJ010_18605 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CJ010_18610 PF06857 Malonate decarboxylase delta subunit (MdcD) CJ010_18615 PF01039 Carboxyl transferase domain CJ010_18635 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG CJ010_18640 PF00698 Acyl transferase domain CJ010_18660 PF03358 NADPH-dependent FMN reductase CJ010_18665 PF00857 Isochorismatase family CJ010_18670 PF02678 Pirin CJ010_18670 PF05726 Pirin C-terminal cupin domain CJ010_18675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_18675 PF03466 LysR substrate binding domain CJ010_18685 PF07715 TonB-dependent Receptor Plug Domain CJ010_18685 PF07660 Secretin and TonB N terminus short domain CJ010_18685 PF00593 TonB dependent receptor CJ010_18700 PF00593 TonB dependent receptor CJ010_18700 PF07715 TonB-dependent Receptor Plug Domain CJ010_18710 PF05951 Bacterial protein of unknown function (DUF882) CJ010_18715 PF03734 L,D-transpeptidase catalytic domain CJ010_18715 PF01471 Putative peptidoglycan binding domain CJ010_18730 PF00267 Gram-negative porin CJ010_18750 PF00171 Aldehyde dehydrogenase family CJ010_18755 PF13360 PQQ-like domain CJ010_18755 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_18760 PF00593 TonB dependent receptor CJ010_18760 PF07715 TonB-dependent Receptor Plug Domain CJ010_18800 PF00072 Response regulator receiver domain CJ010_18800 PF00158 Sigma-54 interaction domain CJ010_18800 PF02954 Bacterial regulatory protein, Fis family CJ010_18815 PF00384 Molybdopterin oxidoreductase CJ010_18815 PF12838 4Fe-4S dicluster domain CJ010_18815 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJ010_18815 PF01568 Molydopterin dinucleotide binding domain CJ010_18815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJ010_18820 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CJ010_18820 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CJ010_18820 PF10531 SLBB domain CJ010_18825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJ010_18825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJ010_18825 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CJ010_18830 PF00301 Rubredoxin CJ010_18835 PF08659 KR domain CJ010_18835 PF00107 Zinc-binding dehydrogenase CJ010_18835 PF02801 Beta-ketoacyl synthase, C-terminal domain CJ010_18835 PF08240 Alcohol dehydrogenase GroES-like domain CJ010_18835 PF00550 Phosphopantetheine attachment site CJ010_18835 PF00109 Beta-ketoacyl synthase, N-terminal domain CJ010_18835 PF14765 Polyketide synthase dehydratase CJ010_18835 PF00698 Acyl transferase domain CJ010_18835 PF16197 Ketoacyl-synthetase C-terminal extension CJ010_18840 PF00378 Enoyl-CoA hydratase/isomerase CJ010_18855 PF00005 ABC transporter CJ010_18860 PF00005 ABC transporter CJ010_18860 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_18865 PF02653 Branched-chain amino acid transport system / permease component CJ010_18870 PF02653 Branched-chain amino acid transport system / permease component CJ010_18885 PF00501 AMP-binding enzyme CJ010_18885 PF13193 AMP-binding enzyme C-terminal domain CJ010_18900 PF01202 Shikimate kinase CJ010_18920 PF02803 Thiolase, C-terminal domain CJ010_18920 PF00108 Thiolase, N-terminal domain CJ010_18930 PF00563 EAL domain CJ010_18930 PF00990 Diguanylate cyclase, GGDEF domain CJ010_18930 PF03707 Bacterial signalling protein N terminal repeat CJ010_18945 PF01037 Lrp/AsnC ligand binding domain CJ010_18950 PF00682 HMGL-like CJ010_18955 PF13193 AMP-binding enzyme C-terminal domain CJ010_18955 PF00501 AMP-binding enzyme CJ010_18965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJ010_18965 PF00364 Biotin-requiring enzyme CJ010_18965 PF00289 Biotin carboxylase, N-terminal domain CJ010_18965 PF02785 Biotin carboxylase C-terminal domain CJ010_18975 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJ010_18975 PF00378 Enoyl-CoA hydratase/isomerase CJ010_18975 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJ010_18980 PF01039 Carboxyl transferase domain CJ010_19005 PF13333 Integrase core domain CJ010_19005 PF13276 HTH-like domain CJ010_19005 PF00665 Integrase core domain CJ010_19055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJ010_19055 PF02770 Acyl-CoA dehydrogenase, middle domain CJ010_19055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJ010_19065 PF04247 Invasion gene expression up-regulator, SirB CJ010_19090 PF00034 Cytochrome c CJ010_19095 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJ010_19110 PF02705 K+ potassium transporter CJ010_19115 PF00072 Response regulator receiver domain CJ010_19115 PF00486 Transcriptional regulatory protein, C terminal CJ010_19120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_19120 PF13492 GAF domain CJ010_19120 PF13493 Domain of unknown function (DUF4118) CJ010_19120 PF02702 Osmosensitive K+ channel His kinase sensor domain CJ010_19120 PF00512 His Kinase A (phospho-acceptor) domain CJ010_19125 PF00437 Type II/IV secretion system protein CJ010_19135 PF08406 CbbQ/NirQ/NorQ C-terminal CJ010_19135 PF07728 AAA domain (dynein-related subfamily) CJ010_19150 PF00092 von Willebrand factor type A domain CJ010_19160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_19160 PF13426 PAS domain CJ010_19160 PF08447 PAS fold CJ010_19165 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CJ010_19165 PF12801 4Fe-4S binding domain CJ010_19165 PF13746 4Fe-4S dicluster domain CJ010_19170 PF02082 Transcriptional regulator CJ010_19175 PF00478 IMP dehydrogenase / GMP reductase domain CJ010_19175 PF00571 CBS domain CJ010_19180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_19185 PF02954 Bacterial regulatory protein, Fis family CJ010_19185 PF00158 Sigma-54 interaction domain CJ010_19190 PF00175 Oxidoreductase NAD-binding domain CJ010_19190 PF00042 Globin CJ010_19190 PF00970 Oxidoreductase FAD-binding domain CJ010_19195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_19195 PF00512 His Kinase A (phospho-acceptor) domain CJ010_19195 PF17149 Periplasmic sensor domain found in signal transduction proteins CJ010_19195 PF01627 Hpt domain CJ010_19195 PF00072 Response regulator receiver domain CJ010_19195 PF00672 HAMP domain CJ010_19215 PF12679 ABC-2 family transporter protein CJ010_19220 PF00005 ABC transporter CJ010_19225 PF05048 Periplasmic copper-binding protein (NosD) CJ010_19235 PF12801 4Fe-4S binding domain CJ010_19235 PF04205 FMN-binding domain CJ010_19240 PF18793 Nitrous oxide reductase propeller repeat 2 CJ010_19240 PF13473 Cupredoxin-like domain CJ010_19240 PF18764 Nitrous oxide reductase propeller repeat CJ010_19255 PF00696 Amino acid kinase family CJ010_19255 PF01842 ACT domain CJ010_19255 PF13840 ACT domain CJ010_19270 PF01242 6-pyruvoyl tetrahydropterin synthase CJ010_19280 PF12795 Mechanosensitive ion channel porin domain CJ010_19280 PF12794 Mechanosensitive ion channel inner membrane domain 1 CJ010_19280 PF00924 Mechanosensitive ion channel CJ010_19290 PF01029 NusB family CJ010_19290 PF01189 16S rRNA methyltransferase RsmB/F CJ010_19300 PF00551 Formyl transferase CJ010_19310 PF01119 DNA mismatch repair protein, C-terminal domain CJ010_19310 PF08676 MutL C terminal dimerisation domain CJ010_19320 PF01402 Ribbon-helix-helix protein, copG family CJ010_19320 PF08753 NikR C terminal nickel binding domain CJ010_19330 PF14743 DNA ligase OB-like domain CJ010_19330 PF01068 ATP dependent DNA ligase domain CJ010_19350 PF00873 AcrB/AcrD/AcrF family CJ010_19355 PF13533 Biotin-lipoyl like CJ010_19360 PF02769 AIR synthase related protein, C-terminal domain CJ010_19360 PF00586 AIR synthase related protein, N-terminal domain CJ010_19365 PF01594 AI-2E family transporter CJ010_19370 PF00308 Bacterial dnaA protein CJ010_19370 PF08299 Bacterial dnaA protein helix-turn-helix CJ010_19380 PF12627 Probable RNA and SrmB- binding site of polymerase A CJ010_19380 PF01743 Poly A polymerase head domain CJ010_19380 PF12626 Polymerase A arginine-rich C-terminus CJ010_19385 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CJ010_19395 PF01712 Deoxynucleoside kinase CJ010_19400 PF02548 Ketopantoate hydroxymethyltransferase CJ010_19405 PF02569 Pantoate-beta-alanine ligase CJ010_19410 PF00478 IMP dehydrogenase / GMP reductase domain CJ010_19410 PF00571 CBS domain CJ010_19415 PF01433 Peptidase family M1 domain CJ010_19415 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CJ010_19415 PF11940 Domain of unknown function (DUF3458) Ig-like fold CJ010_19425 PF00689 Cation transporting ATPase, C-terminus CJ010_19425 PF00690 Cation transporter/ATPase, N-terminus CJ010_19450 PF00205 Thiamine pyrophosphate enzyme, central domain CJ010_19450 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJ010_19450 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJ010_19455 PF10369 Small subunit of acetolactate synthase CJ010_19460 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CJ010_19460 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CJ010_19465 PF01066 CDP-alcohol phosphatidyltransferase CJ010_19470 PF00072 Response regulator receiver domain CJ010_19470 PF00486 Transcriptional regulatory protein, C terminal CJ010_19475 PF00072 Response regulator receiver domain CJ010_19475 PF01627 Hpt domain CJ010_19475 PF00512 His Kinase A (phospho-acceptor) domain CJ010_19475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_19475 PF00672 HAMP domain CJ010_19490 PF00682 HMGL-like CJ010_19490 PF08502 LeuA allosteric (dimerisation) domain CJ010_19500 PF03358 NADPH-dependent FMN reductase CJ010_19505 PF03631 Virulence factor BrkB CJ010_19515 PF00829 Ribosomal prokaryotic L21 protein CJ010_19520 PF01016 Ribosomal L27 protein CJ010_19525 PF01926 50S ribosome-binding GTPase CJ010_19525 PF01018 GTP1/OBG CJ010_19530 PF01472 PUA domain CJ010_19530 PF00696 Amino acid kinase family CJ010_19535 PF02913 FAD linked oxidases, C-terminal domain CJ010_19535 PF01565 FAD binding domain CJ010_19555 PF00899 ThiF family CJ010_19585 PF13193 AMP-binding enzyme C-terminal domain CJ010_19585 PF16177 Acetyl-coenzyme A synthetase N-terminus CJ010_19585 PF00501 AMP-binding enzyme CJ010_19590 PF01627 Hpt domain CJ010_19590 PF00072 Response regulator receiver domain CJ010_19590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_19590 PF01584 CheW-like domain CJ010_19595 PF00107 Zinc-binding dehydrogenase CJ010_19605 PF04011 LemA family CJ010_19635 PF01464 Transglycosylase SLT domain CJ010_19635 PF10145 Phage-related minor tail protein CJ010_19635 PF01551 Peptidase family M23 CJ010_19640 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CJ010_19640 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CJ010_19640 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CJ010_19650 PF02954 Bacterial regulatory protein, Fis family CJ010_19650 PF00072 Response regulator receiver domain CJ010_19650 PF00158 Sigma-54 interaction domain CJ010_19655 PF02743 Cache domain CJ010_19655 PF00512 His Kinase A (phospho-acceptor) domain CJ010_19655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_19660 PF02397 Bacterial sugar transferase CJ010_19670 PF01575 MaoC like domain CJ010_19700 PF00303 Thymidylate synthase CJ010_19705 PF00186 Dihydrofolate reductase CJ010_19710 PF01276 Orn/Lys/Arg decarboxylase, major domain CJ010_19710 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CJ010_19710 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CJ010_19715 PF00692 dUTPase CJ010_19720 PF10609 NUBPL iron-transfer P-loop NTPase CJ010_19725 PF00691 OmpA family CJ010_19725 PF05736 OprF membrane domain CJ010_19730 PF09334 tRNA synthetases class I (M) CJ010_19730 PF01588 Putative tRNA binding domain CJ010_19735 PF01740 STAS domain CJ010_19735 PF00916 Sulfate permease family CJ010_19740 PF00708 Acylphosphatase CJ010_19745 PF00884 Sulfatase CJ010_19755 PF14579 Helix-hairpin-helix motif CJ010_19755 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJ010_19755 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJ010_19755 PF02811 PHP domain CJ010_19755 PF01336 OB-fold nucleic acid binding domain CJ010_19760 PF08240 Alcohol dehydrogenase GroES-like domain CJ010_19760 PF00107 Zinc-binding dehydrogenase CJ010_19770 PF03949 Malic enzyme, NAD binding domain CJ010_19770 PF01515 Phosphate acetyl/butaryl transferase CJ010_19770 PF00390 Malic enzyme, N-terminal domain CJ010_19775 PF13614 AAA domain CJ010_19780 PF13361 UvrD-like helicase C-terminal domain CJ010_19780 PF00580 UvrD/REP helicase N-terminal domain CJ010_19790 PF00133 tRNA synthetases class I (I, L, M and V) CJ010_19790 PF13603 Leucyl-tRNA synthetase, Domain 2 CJ010_19790 PF09334 tRNA synthetases class I (M) CJ010_19790 PF08264 Anticodon-binding domain of tRNA CJ010_19800 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CJ010_19800 PF06144 DNA polymerase III, delta subunit CJ010_19805 PF00171 Aldehyde dehydrogenase family CJ010_19810 PF02899 Phage integrase, N-terminal SAM-like domain CJ010_19810 PF00589 Phage integrase family CJ010_19815 PF04073 Aminoacyl-tRNA editing domain CJ010_19830 PF02660 Glycerol-3-phosphate acyltransferase CJ010_19835 PF00814 Glycoprotease family CJ010_19840 PF01165 Ribosomal protein S21 CJ010_19845 PF01807 CHC2 zinc finger CJ010_19845 PF08275 DNA primase catalytic core, N-terminal domain CJ010_19845 PF10410 DnaB-helicase binding domain of primase CJ010_19845 PF08278 DNA primase DnaG DnaB-binding CJ010_19850 PF04546 Sigma-70, non-essential region CJ010_19850 PF04545 Sigma-70, region 4 CJ010_19850 PF04539 Sigma-70 region 3 CJ010_19850 PF03979 Sigma-70 factor, region 1.1 CJ010_19850 PF00140 Sigma-70 factor, region 1.2 CJ010_19850 PF04542 Sigma-70 region 2 CJ010_19860 PF00072 Response regulator receiver domain CJ010_19865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJ010_19885 PF02881 SRP54-type protein, helical bundle domain CJ010_19885 PF02978 Signal peptide binding domain CJ010_19885 PF00448 SRP54-type protein, GTPase domain CJ010_19895 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CJ010_19895 PF00437 Type II/IV secretion system protein CJ010_19900 PF00482 Type II secretion system (T2SS), protein F CJ010_19905 PF06750 Bacterial Peptidase A24 N-terminal domain CJ010_19905 PF01478 Type IV leader peptidase family CJ010_19920 PF02938 GAD domain CJ010_19920 PF00152 tRNA synthetases class II (D, K and N) CJ010_19920 PF01336 OB-fold nucleic acid binding domain CJ010_19925 PF02954 Bacterial regulatory protein, Fis family CJ010_19925 PF00158 Sigma-54 interaction domain CJ010_19925 PF00072 Response regulator receiver domain CJ010_19930 PF00545 ribonuclease CJ010_19940 PF00011 Hsp20/alpha crystallin family CJ010_19945 PF00696 Amino acid kinase family CJ010_19985 PF00550 Phosphopantetheine attachment site CJ010_19985 PF00501 AMP-binding enzyme CJ010_19985 PF00668 Condensation domain CJ010_19985 PF13193 AMP-binding enzyme C-terminal domain CJ010_19985 PF00975 Thioesterase domain CJ010_19990 PF00535 Glycosyl transferase family 2 CJ010_20000 PF00535 Glycosyl transferase family 2 CJ010_20010 PF00733 Asparagine synthase CJ010_20010 PF13537 Glutamine amidotransferase domain CJ010_20015 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJ010_20015 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJ010_20020 PF01943 Polysaccharide biosynthesis protein CJ010_20025 PF13439 Glycosyltransferase Family 4 CJ010_20025 PF00534 Glycosyl transferases group 1 CJ010_20030 PF04230 Polysaccharide pyruvyl transferase CJ010_20040 PF00535 Glycosyl transferase family 2 CJ010_20045 PF00535 Glycosyl transferase family 2 CJ010_20060 PF14535 AMP-binding enzyme C-terminal domain CJ010_20060 PF00501 AMP-binding enzyme CJ010_20065 PF13439 Glycosyltransferase Family 4 CJ010_20065 PF00534 Glycosyl transferases group 1 CJ010_20070 PF13579 Glycosyl transferase 4-like domain CJ010_20070 PF00534 Glycosyl transferases group 1 CJ010_20080 PF13537 Glutamine amidotransferase domain CJ010_20080 PF00733 Asparagine synthase CJ010_20085 PF00534 Glycosyl transferases group 1 CJ010_20110 PF02350 UDP-N-acetylglucosamine 2-epimerase CJ010_20115 PF01471 Putative peptidoglycan binding domain CJ010_20115 PF13401 AAA domain CJ010_20125 PF13614 AAA domain CJ010_20145 PF00753 Metallo-beta-lactamase superfamily CJ010_20145 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CJ010_20145 PF10996 Beta-Casp domain CJ010_20150 PF13609 Gram-negative porin CJ010_20155 PF13609 Gram-negative porin CJ010_20160 PF00140 Sigma-70 factor, region 1.2 CJ010_20160 PF04542 Sigma-70 region 2 CJ010_20160 PF04545 Sigma-70, region 4 CJ010_20165 PF02630 SCO1/SenC CJ010_20170 PF01040 UbiA prenyltransferase family CJ010_20175 PF02628 Cytochrome oxidase assembly protein CJ010_20195 PF00510 Cytochrome c oxidase subunit III CJ010_20205 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CJ010_20210 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJ010_20215 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CJ010_20215 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CJ010_20220 PF01467 Cytidylyltransferase-like CJ010_20230 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CJ010_20230 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CJ010_20235 PF13411 MerR HTH family regulatory protein CJ010_20235 PF02607 B12 binding domain CJ010_20275 PF00106 short chain dehydrogenase CJ010_20285 PF00107 Zinc-binding dehydrogenase CJ010_20285 PF08240 Alcohol dehydrogenase GroES-like domain CJ010_20290 PF00440 Bacterial regulatory proteins, tetR family CJ010_20290 PF16925 Tetracyclin repressor-like, C-terminal domain CJ010_20295 PF16124 RecQ zinc-binding CJ010_20295 PF00570 HRDC domain CJ010_20295 PF00271 Helicase conserved C-terminal domain CJ010_20295 PF00270 DEAD/DEAH box helicase CJ010_20295 PF09382 RQC domain CJ010_20305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJ010_20310 PF01625 Peptide methionine sulfoxide reductase CJ010_20320 PF00218 Indole-3-glycerol phosphate synthase CJ010_20325 PF00591 Glycosyl transferase family, a/b domain CJ010_20325 PF02885 Glycosyl transferase family, helical bundle domain CJ010_20330 PF00117 Glutamine amidotransferase class-I CJ010_20335 PF04715 Anthranilate synthase component I, N terminal region CJ010_20335 PF00425 chorismate binding enzyme CJ010_20340 PF13419 Haloacid dehalogenase-like hydrolase CJ010_20350 PF00437 Type II/IV secretion system protein CJ010_20350 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CJ010_20355 PF12706 Beta-lactamase superfamily domain CJ010_20360 PF00498 FHA domain CJ010_20370 PF02629 CoA binding domain CJ010_20370 PF00549 CoA-ligase CJ010_20375 PF08442 ATP-grasp domain CJ010_20375 PF00549 CoA-ligase CJ010_20390 PF01784 NIF3 (NGG1p interacting factor 3) CJ010_20395 PF17820 PDZ domain CJ010_20395 PF13180 PDZ domain CJ010_20405 PF02416 mttA/Hcf106 family CJ010_20410 PF02416 mttA/Hcf106 family CJ010_20420 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CJ010_20425 PF01502 Phosphoribosyl-AMP cyclohydrolase CJ010_20430 PF00977 Histidine biosynthesis protein CJ010_20435 PF00977 Histidine biosynthesis protein CJ010_20440 PF00117 Glutamine amidotransferase class-I CJ010_20445 PF00475 Imidazoleglycerol-phosphate dehydratase CJ010_20450 PF00155 Aminotransferase class I and II CJ010_20455 PF01464 Transglycosylase SLT domain CJ010_20455 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CJ010_20460 PF01510 N-acetylmuramoyl-L-alanine amidase CJ010_20470 PF00005 ABC transporter CJ010_20485 PF07963 Prokaryotic N-terminal methylation motif CJ010_20485 PF00114 Pilin (bacterial filament) CJ010_20500 PF00072 Response regulator receiver domain CJ010_20500 PF00158 Sigma-54 interaction domain CJ010_20500 PF02954 Bacterial regulatory protein, Fis family CJ010_20505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_20505 PF00512 His Kinase A (phospho-acceptor) domain CJ010_20515 PF00155 Aminotransferase class I and II CJ010_20520 PF01008 Initiation factor 2 subunit family CJ010_20525 PF00596 Class II Aldolase and Adducin N-terminal domain CJ010_20535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJ010_20535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJ010_20540 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJ010_20540 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJ010_20545 PF02885 Glycosyl transferase family, helical bundle domain CJ010_20550 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CJ010_20550 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CJ010_20570 PF05726 Pirin C-terminal cupin domain CJ010_20570 PF02678 Pirin CJ010_20575 PF02525 Flavodoxin-like fold CJ010_20580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_20580 PF03466 LysR substrate binding domain CJ010_20585 PF02600 Disulfide bond formation protein DsbB CJ010_20605 PF00873 AcrB/AcrD/AcrF family CJ010_20620 PF00899 ThiF family CJ010_20635 PF00155 Aminotransferase class I and II CJ010_20640 PF00990 Diguanylate cyclase, GGDEF domain CJ010_20640 PF00563 EAL domain CJ010_20640 PF03707 Bacterial signalling protein N terminal repeat CJ010_20645 PF00072 Response regulator receiver domain CJ010_20650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_20650 PF00512 His Kinase A (phospho-acceptor) domain CJ010_20650 PF08446 PAS fold CJ010_20650 PF00360 Phytochrome region CJ010_20650 PF01590 GAF domain CJ010_20660 PF00436 Single-strand binding protein family CJ010_20665 PF07690 Major Facilitator Superfamily CJ010_20670 PF17760 UvrA interaction domain CJ010_20670 PF17755 UvrA DNA-binding domain CJ010_20680 PF16363 GDP-mannose 4,6 dehydratase CJ010_20685 PF01196 Ribosomal protein L17 CJ010_20690 PF01000 RNA polymerase Rpb3/RpoA insert domain CJ010_20690 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CJ010_20690 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CJ010_20695 PF00163 Ribosomal protein S4/S9 N-terminal domain CJ010_20695 PF01479 S4 domain CJ010_20700 PF00411 Ribosomal protein S11 CJ010_20705 PF00416 Ribosomal protein S13/S18 CJ010_20710 PF00444 Ribosomal protein L36 CJ010_20715 PF01176 Translation initiation factor 1A / IF-1 CJ010_20720 PF00344 SecY translocase CJ010_20725 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CJ010_20730 PF00327 Ribosomal protein L30p/L7e CJ010_20735 PF03719 Ribosomal protein S5, C-terminal domain CJ010_20735 PF00333 Ribosomal protein S5, N-terminal domain CJ010_20740 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CJ010_20745 PF00347 Ribosomal protein L6 CJ010_20750 PF00410 Ribosomal protein S8 CJ010_20755 PF00253 Ribosomal protein S14p/S29e CJ010_20760 PF00281 Ribosomal protein L5 CJ010_20760 PF00673 ribosomal L5P family C-terminus CJ010_20765 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CJ010_20770 PF00238 Ribosomal protein L14p/L23e CJ010_20775 PF00366 Ribosomal protein S17 CJ010_20780 PF00831 Ribosomal L29 protein CJ010_20785 PF00252 Ribosomal protein L16p/L10e CJ010_20790 PF00189 Ribosomal protein S3, C-terminal domain CJ010_20790 PF07650 KH domain CJ010_20795 PF00237 Ribosomal protein L22p/L17e CJ010_20800 PF00203 Ribosomal protein S19 CJ010_20805 PF00181 Ribosomal Proteins L2, RNA binding domain CJ010_20805 PF03947 Ribosomal Proteins L2, C-terminal domain CJ010_20810 PF00276 Ribosomal protein L23 CJ010_20815 PF00573 Ribosomal protein L4/L1 family CJ010_20820 PF00297 Ribosomal protein L3 CJ010_20825 PF00338 Ribosomal protein S10p/S20e CJ010_20830 PF03144 Elongation factor Tu domain 2 CJ010_20830 PF03143 Elongation factor Tu C-terminal domain CJ010_20830 PF00009 Elongation factor Tu GTP binding domain CJ010_20835 PF14492 Elongation Factor G, domain II CJ010_20835 PF00009 Elongation factor Tu GTP binding domain CJ010_20835 PF03764 Elongation factor G, domain IV CJ010_20835 PF00679 Elongation factor G C-terminus CJ010_20835 PF03144 Elongation factor Tu domain 2 CJ010_20840 PF00177 Ribosomal protein S7p/S5e CJ010_20845 PF00164 Ribosomal protein S12/S23 CJ010_20850 PF04998 RNA polymerase Rpb1, domain 5 CJ010_20850 PF05000 RNA polymerase Rpb1, domain 4 CJ010_20850 PF04997 RNA polymerase Rpb1, domain 1 CJ010_20850 PF00623 RNA polymerase Rpb1, domain 2 CJ010_20850 PF04983 RNA polymerase Rpb1, domain 3 CJ010_20855 PF04565 RNA polymerase Rpb2, domain 3 CJ010_20855 PF04563 RNA polymerase beta subunit CJ010_20855 PF04560 RNA polymerase Rpb2, domain 7 CJ010_20855 PF00562 RNA polymerase Rpb2, domain 6 CJ010_20855 PF10385 RNA polymerase beta subunit external 1 domain CJ010_20855 PF04561 RNA polymerase Rpb2, domain 2 CJ010_20860 PF16320 Ribosomal protein L7/L12 dimerisation domain CJ010_20860 PF00542 Ribosomal protein L7/L12 C-terminal domain CJ010_20865 PF00466 Ribosomal protein L10 CJ010_20870 PF00687 Ribosomal protein L1p/L10e family CJ010_20875 PF00298 Ribosomal protein L11, RNA binding domain CJ010_20875 PF03946 Ribosomal protein L11, N-terminal domain CJ010_20880 PF00467 KOW motif CJ010_20880 PF02357 Transcription termination factor nusG CJ010_20885 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CJ010_20895 PF00009 Elongation factor Tu GTP binding domain CJ010_20895 PF03144 Elongation factor Tu domain 2 CJ010_20895 PF03143 Elongation factor Tu C-terminal domain CJ010_20915 PF01565 FAD binding domain CJ010_20915 PF02913 FAD linked oxidases, C-terminal domain CJ010_20935 PF00196 Bacterial regulatory proteins, luxR family CJ010_20935 PF00072 Response regulator receiver domain CJ010_20945 PF01627 Hpt domain CJ010_20945 PF00072 Response regulator receiver domain CJ010_20945 PF00512 His Kinase A (phospho-acceptor) domain CJ010_20945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_20945 PF00672 HAMP domain CJ010_20955 PF02515 CoA-transferase family III CJ010_20965 PF00005 ABC transporter CJ010_20980 PF02653 Branched-chain amino acid transport system / permease component CJ010_20985 PF00005 ABC transporter CJ010_20985 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_20990 PF00501 AMP-binding enzyme CJ010_21000 PF00202 Aminotransferase class-III CJ010_21005 PF02581 Thiamine monophosphate synthase CJ010_21010 PF08543 Phosphomethylpyrimidine kinase CJ010_21015 PF00301 Rubredoxin CJ010_21020 PF00072 Response regulator receiver domain CJ010_21025 PF00072 Response regulator receiver domain CJ010_21035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_21035 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CJ010_21040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_21040 PF00072 Response regulator receiver domain CJ010_21040 PF01627 Hpt domain CJ010_21040 PF01584 CheW-like domain CJ010_21045 PF00875 DNA photolyase CJ010_21045 PF03441 FAD binding domain of DNA photolyase CJ010_21050 PF02622 Uncharacterized ACR, COG1678 CJ010_21055 PF03652 Holliday junction resolvase CJ010_21060 PF00156 Phosphoribosyl transferase domain CJ010_21065 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJ010_21065 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJ010_21070 PF01979 Amidohydrolase family CJ010_21075 PF02594 Uncharacterised ACR, YggU family COG1872 CJ010_21080 PF02325 YGGT family CJ010_21085 PF03807 NADP oxidoreductase coenzyme F420-dependent CJ010_21085 PF14748 Pyrroline-5-carboxylate reductase dimerisation CJ010_21090 PF01168 Alanine racemase, N-terminal domain CJ010_21095 PF00437 Type II/IV secretion system protein CJ010_21100 PF00437 Type II/IV secretion system protein CJ010_21105 PF00672 HAMP domain CJ010_21105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_21105 PF02743 Cache domain CJ010_21110 PF08447 PAS fold CJ010_21110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_21115 PF02926 THUMP domain CJ010_21115 PF01170 Putative RNA methylase family UPF0020 CJ010_21135 PF13247 4Fe-4S dicluster domain CJ010_21140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJ010_21140 PF00384 Molybdopterin oxidoreductase CJ010_21140 PF01568 Molydopterin dinucleotide binding domain CJ010_21170 PF02634 FdhD/NarQ family CJ010_21175 PF12804 MobA-like NTP transferase domain CJ010_21185 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CJ010_21190 PF00512 His Kinase A (phospho-acceptor) domain CJ010_21190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_21190 PF08447 PAS fold CJ010_21190 PF00989 PAS fold CJ010_21195 PF02954 Bacterial regulatory protein, Fis family CJ010_21195 PF00072 Response regulator receiver domain CJ010_21195 PF00158 Sigma-54 interaction domain CJ010_21210 PF00970 Oxidoreductase FAD-binding domain CJ010_21210 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_21210 PF00175 Oxidoreductase NAD-binding domain CJ010_21215 PF00563 EAL domain CJ010_21215 PF08668 HDOD domain CJ010_21220 PF00989 PAS fold CJ010_21220 PF00512 His Kinase A (phospho-acceptor) domain CJ010_21220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_21225 PF00990 Diguanylate cyclase, GGDEF domain CJ010_21225 PF03707 Bacterial signalling protein N terminal repeat CJ010_21225 PF00563 EAL domain CJ010_21230 PF00034 Cytochrome c CJ010_21235 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJ010_21240 PF01730 UreF CJ010_21245 PF02814 UreE urease accessory protein, N-terminal domain CJ010_21245 PF05194 UreE urease accessory protein, C-terminal domain CJ010_21250 PF01979 Amidohydrolase family CJ010_21250 PF00449 Urease alpha-subunit, N-terminal domain CJ010_21255 PF00699 Urease beta subunit CJ010_21260 PF00547 Urease, gamma subunit CJ010_21265 PF01774 UreD urease accessory protein CJ010_21270 PF14489 QueF-like protein CJ010_21270 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CJ010_21275 PF00884 Sulfatase CJ010_21285 PF09084 NMT1/THI5 like CJ010_21290 PF00005 ABC transporter CJ010_21295 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_21300 PF01638 HxlR-like helix-turn-helix CJ010_21305 PF03358 NADPH-dependent FMN reductase CJ010_21310 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJ010_21310 PF07685 CobB/CobQ-like glutamine amidotransferase domain CJ010_21315 PF03186 CobD/Cbib protein CJ010_21320 PF00155 Aminotransferase class I and II CJ010_21325 PF01497 Periplasmic binding protein CJ010_21335 PF00271 Helicase conserved C-terminal domain CJ010_21335 PF00270 DEAD/DEAH box helicase CJ010_21340 PF08502 LeuA allosteric (dimerisation) domain CJ010_21340 PF00682 HMGL-like CJ010_21345 PF00881 Nitroreductase family CJ010_21360 PF00563 EAL domain CJ010_21360 PF00990 Diguanylate cyclase, GGDEF domain CJ010_21360 PF08448 PAS fold CJ010_21370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJ010_21375 PF01903 CbiX CJ010_21380 PF02570 Precorrin-8X methylmutase CJ010_21385 PF01888 CbiD CJ010_21390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJ010_21395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJ010_21405 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJ010_21405 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJ010_21420 PF00155 Aminotransferase class I and II CJ010_21420 PF00392 Bacterial regulatory proteins, gntR family CJ010_21430 PF02867 Ribonucleotide reductase, barrel domain CJ010_21430 PF03477 ATP cone domain CJ010_21430 PF00317 Ribonucleotide reductase, all-alpha domain CJ010_21435 PF00268 Ribonucleotide reductase, small chain CJ010_21465 PF02798 Glutathione S-transferase, N-terminal domain CJ010_21475 PF00563 EAL domain CJ010_21475 PF00990 Diguanylate cyclase, GGDEF domain CJ010_21475 PF13426 PAS domain CJ010_21485 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CJ010_21485 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CJ010_21490 PF01810 LysE type translocator CJ010_21495 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CJ010_21510 PF02666 Phosphatidylserine decarboxylase CJ010_21515 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJ010_21515 PF07685 CobB/CobQ-like glutamine amidotransferase domain CJ010_21520 PF10414 Sirohaem synthase dimerisation region CJ010_21520 PF14824 Sirohaem biosynthesis protein central CJ010_21520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJ010_21525 PF12557 Cob(I)alamin adenosyltransferase N terminal CJ010_21525 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CJ010_21530 PF00005 ABC transporter CJ010_21535 PF01032 FecCD transport family CJ010_21540 PF07715 TonB-dependent Receptor Plug Domain CJ010_21540 PF00593 TonB dependent receptor CJ010_21545 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CJ010_21550 PF01435 Peptidase family M48 CJ010_21555 PF05987 Bacterial protein of unknown function (DUF898) CJ010_21560 PF02277 Phosphoribosyltransferase CJ010_21565 PF02654 Cobalamin-5-phosphate synthase CJ010_21575 PF01467 Cytidylyltransferase-like CJ010_21575 PF00294 pfkB family carbohydrate kinase CJ010_21580 PF01370 NAD dependent epimerase/dehydratase family CJ010_21585 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJ010_21590 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJ010_21595 PF00534 Glycosyl transferases group 1 CJ010_21595 PF13439 Glycosyltransferase Family 4 CJ010_21620 PF00664 ABC transporter transmembrane region CJ010_21620 PF00005 ABC transporter CJ010_21635 PF04932 O-Antigen ligase CJ010_21640 PF00132 Bacterial transferase hexapeptide (six repeats) CJ010_21645 PF00535 Glycosyl transferase family 2 CJ010_21660 PF00534 Glycosyl transferases group 1 CJ010_21660 PF13439 Glycosyltransferase Family 4 CJ010_21665 PF16861 Carbamoyltransferase C-terminus CJ010_21665 PF02543 Carbamoyltransferase N-terminus CJ010_21670 PF01757 Acyltransferase family CJ010_21675 PF01757 Acyltransferase family CJ010_21680 PF01925 Sulfite exporter TauE/SafE CJ010_21685 PF00459 Inositol monophosphatase family CJ010_21690 PF00009 Elongation factor Tu GTP binding domain CJ010_21695 PF02719 Polysaccharide biosynthesis protein CJ010_21700 PF00953 Glycosyl transferase family 4 CJ010_21705 PF01370 NAD dependent epimerase/dehydratase family CJ010_21710 PF13439 Glycosyltransferase Family 4 CJ010_21710 PF00534 Glycosyl transferases group 1 CJ010_21715 PF16363 GDP-mannose 4,6 dehydratase CJ010_21720 PF16363 GDP-mannose 4,6 dehydratase CJ010_21725 PF00534 Glycosyl transferases group 1 CJ010_21725 PF13439 Glycosyltransferase Family 4 CJ010_21730 PF00534 Glycosyl transferases group 1 CJ010_21730 PF13439 Glycosyltransferase Family 4 CJ010_21780 PF02350 UDP-N-acetylglucosamine 2-epimerase CJ010_21795 PF00005 ABC transporter CJ010_21805 PF01050 Mannose-6-phosphate isomerase CJ010_21805 PF00483 Nucleotidyl transferase CJ010_21810 PF01367 5'-3' exonuclease, C-terminal SAM fold CJ010_21810 PF00476 DNA polymerase family A CJ010_21810 PF01612 3'-5' exonuclease CJ010_21810 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CJ010_21815 PF03641 Possible lysine decarboxylase CJ010_21830 PF01636 Phosphotransferase enzyme family CJ010_21845 PF01467 Cytidylyltransferase-like CJ010_21855 PF02590 Predicted SPOUT methyltransferase CJ010_21860 PF01327 Polypeptide deformylase CJ010_21865 PF02545 Maf-like protein CJ010_21870 PF10150 Ribonuclease E/G family CJ010_21870 PF00575 S1 RNA binding domain CJ010_21890 PF00486 Transcriptional regulatory protein, C terminal CJ010_21890 PF00072 Response regulator receiver domain CJ010_21895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_21895 PF00512 His Kinase A (phospho-acceptor) domain CJ010_21895 PF00672 HAMP domain CJ010_21905 PF03466 LysR substrate binding domain CJ010_21905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_21915 PF17185 NlpE C-terminal OB domain CJ010_21915 PF04170 NlpE N-terminal domain CJ010_21920 PF00672 HAMP domain CJ010_21920 PF00211 Adenylate and Guanylate cyclase catalytic domain CJ010_21925 PF03352 Methyladenine glycosylase CJ010_21930 PF03466 LysR substrate binding domain CJ010_21930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_21935 PF08240 Alcohol dehydrogenase GroES-like domain CJ010_21935 PF00107 Zinc-binding dehydrogenase CJ010_21940 PF00756 Putative esterase CJ010_21950 PF00012 Hsp70 protein CJ010_21955 PF00990 Diguanylate cyclase, GGDEF domain CJ010_21955 PF08448 PAS fold CJ010_21960 PF00766 Electron transfer flavoprotein FAD-binding domain CJ010_21960 PF01012 Electron transfer flavoprotein domain CJ010_21965 PF01012 Electron transfer flavoprotein domain CJ010_21975 PF00005 ABC transporter CJ010_21980 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_21990 PF11953 Domain of unknown function (DUF3470) CJ010_21990 PF00037 4Fe-4S binding domain CJ010_22005 PF00890 FAD binding domain CJ010_22005 PF02910 Fumarate reductase flavoprotein C-term CJ010_22020 PF03601 Conserved hypothetical protein 698 CJ010_22025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_22025 PF03466 LysR substrate binding domain CJ010_22030 PF01464 Transglycosylase SLT domain CJ010_22035 PF00440 Bacterial regulatory proteins, tetR family CJ010_22035 PF17938 Tetracyclin repressor-like, C-terminal domain CJ010_22040 PF00005 ABC transporter CJ010_22045 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_22045 PF00005 ABC transporter CJ010_22055 PF13458 Periplasmic binding protein CJ010_22060 PF12802 MarR family CJ010_22065 PF00672 HAMP domain CJ010_22065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_22070 PF00034 Cytochrome c CJ010_22070 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJ010_22070 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_22075 PF00857 Isochorismatase family CJ010_22085 PF00561 alpha/beta hydrolase fold CJ010_22090 PF17645 Arylmalonate decarboxylase CJ010_22095 PF01494 FAD binding domain CJ010_22100 PF01799 [2Fe-2S] binding domain CJ010_22100 PF00111 2Fe-2S iron-sulfur cluster binding domain CJ010_22105 PF00034 Cytochrome c CJ010_22105 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_22105 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJ010_22110 PF13478 XdhC Rossmann domain CJ010_22110 PF02625 XdhC and CoxI family CJ010_22115 PF18381 YcaO cyclodehydratase C-terminal domain CJ010_22115 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CJ010_22120 PF02560 Cyanate lyase C-terminal domain CJ010_22125 PF00005 ABC transporter CJ010_22130 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_22145 PF00196 Bacterial regulatory proteins, luxR family CJ010_22145 PF00072 Response regulator receiver domain CJ010_22150 PF07730 Histidine kinase CJ010_22150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_22150 PF05231 MASE1 CJ010_22160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_22160 PF03466 LysR substrate binding domain CJ010_22170 PF00459 Inositol monophosphatase family CJ010_22180 PF00005 ABC transporter CJ010_22180 PF08402 TOBE domain CJ010_22185 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_22190 PF00455 DeoR C terminal sensor domain CJ010_22190 PF08220 DeoR-like helix-turn-helix domain CJ010_22195 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CJ010_22200 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CJ010_22225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_22225 PF03466 LysR substrate binding domain CJ010_22230 PF07690 Major Facilitator Superfamily CJ010_22235 PF00248 Aldo/keto reductase family CJ010_22240 PF00034 Cytochrome c CJ010_22240 PF03150 Di-haem cytochrome c peroxidase CJ010_22245 PF03466 LysR substrate binding domain CJ010_22245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_22250 PF14525 AraC-binding-like domain CJ010_22255 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_22255 PF13360 PQQ-like domain CJ010_22265 PF00171 Aldehyde dehydrogenase family CJ010_22270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJ010_22275 PF01380 SIS domain CJ010_22280 PF12804 MobA-like NTP transferase domain CJ010_22280 PF00132 Bacterial transferase hexapeptide (six repeats) CJ010_22285 PF01515 Phosphate acetyl/butaryl transferase CJ010_22290 PF00871 Acetokinase family CJ010_22300 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJ010_22300 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJ010_22305 PF00310 Glutamine amidotransferases class-II CJ010_22305 PF01493 GXGXG motif CJ010_22305 PF01645 Conserved region in glutamate synthase CJ010_22305 PF04898 Glutamate synthase central domain CJ010_22310 PF13286 Phosphohydrolase-associated domain CJ010_22310 PF01966 HD domain CJ010_22315 PF01761 3-dehydroquinate synthase CJ010_22320 PF01202 Shikimate kinase CJ010_22325 PF03958 Bacterial type II/III secretion system short domain CJ010_22325 PF07660 Secretin and TonB N terminus short domain CJ010_22325 PF11741 AMIN domain CJ010_22325 PF00263 Bacterial type II and III secretion system protein CJ010_22350 PF00912 Transglycosylase CJ010_22350 PF00905 Penicillin binding protein transpeptidase domain CJ010_22350 PF17092 Penicillin-binding protein OB-like domain CJ010_22355 PF01491 Frataxin-like domain CJ010_22365 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJ010_22365 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJ010_22375 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CJ010_22385 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CJ010_22390 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CJ010_22395 PF02146 Sir2 family CJ010_22400 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJ010_22400 PF00384 Molybdopterin oxidoreductase CJ010_22400 PF01568 Molydopterin dinucleotide binding domain CJ010_22410 PF00156 Phosphoribosyl transferase domain CJ010_22415 PF03372 Endonuclease/Exonuclease/phosphatase family CJ010_22420 PF03707 Bacterial signalling protein N terminal repeat CJ010_22420 PF00563 EAL domain CJ010_22420 PF00990 Diguanylate cyclase, GGDEF domain CJ010_22425 PF00989 PAS fold CJ010_22425 PF00512 His Kinase A (phospho-acceptor) domain CJ010_22425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_22425 PF13426 PAS domain CJ010_22425 PF13188 PAS domain CJ010_22445 PF00860 Permease family CJ010_22475 PF00072 Response regulator receiver domain CJ010_22475 PF00486 Transcriptional regulatory protein, C terminal CJ010_22480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_22480 PF00672 HAMP domain CJ010_22480 PF00512 His Kinase A (phospho-acceptor) domain CJ010_22485 PF00486 Transcriptional regulatory protein, C terminal CJ010_22485 PF00072 Response regulator receiver domain CJ010_22490 PF00512 His Kinase A (phospho-acceptor) domain CJ010_22490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_22490 PF08521 Two-component sensor kinase N-terminal CJ010_22495 PF13180 PDZ domain CJ010_22495 PF17820 PDZ domain CJ010_22505 PF14497 Glutathione S-transferase, C-terminal domain CJ010_22505 PF02798 Glutathione S-transferase, N-terminal domain CJ010_22510 PF03480 Bacterial extracellular solute-binding protein, family 7 CJ010_22530 PF01494 FAD binding domain CJ010_22545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJ010_22560 PF01565 FAD binding domain CJ010_22560 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CJ010_22565 PF00924 Mechanosensitive ion channel CJ010_22565 PF05552 Conserved TM helix CJ010_22580 PF05116 Sucrose-6F-phosphate phosphohydrolase CJ010_22580 PF00982 Glycosyltransferase family 20 CJ010_22590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_22590 PF12729 Four helix bundle sensory module for signal transduction CJ010_22590 PF00672 HAMP domain CJ010_22610 PF00579 tRNA synthetases class I (W and Y) CJ010_22635 PF07075 Protein of unknown function (DUF1343) CJ010_22640 PF00939 Sodium:sulfate symporter transmembrane region CJ010_22650 PF00085 Thioredoxin CJ010_22665 PF02311 AraC-like ligand binding domain CJ010_22665 PF12833 Helix-turn-helix domain CJ010_22695 PF01548 Transposase CJ010_22695 PF02371 Transposase IS116/IS110/IS902 family CJ010_22705 PF00589 Phage integrase family CJ010_22705 PF13495 Phage integrase, N-terminal SAM-like domain CJ010_22720 PF02607 B12 binding domain CJ010_22720 PF02310 B12 binding domain CJ010_22720 PF02574 Homocysteine S-methyltransferase CJ010_22720 PF00809 Pterin binding enzyme CJ010_22720 PF02965 Vitamin B12 dependent methionine synthase, activation domain CJ010_22735 PF13458 Periplasmic binding protein CJ010_22740 PF13458 Periplasmic binding protein CJ010_22745 PF02653 Branched-chain amino acid transport system / permease component CJ010_22750 PF11862 Domain of unknown function (DUF3382) CJ010_22750 PF02653 Branched-chain amino acid transport system / permease component CJ010_22755 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJ010_22755 PF00005 ABC transporter CJ010_22760 PF00005 ABC transporter CJ010_22765 PF07690 Major Facilitator Superfamily CJ010_22775 PF04380 Membrane fusogenic activity CJ010_22785 PF00543 Nitrogen regulatory protein P-II CJ010_22790 PF00909 Ammonium Transporter Family CJ010_22795 PF01842 ACT domain CJ010_22795 PF00551 Formyl transferase CJ010_22805 PF11871 Domain of unknown function (DUF3391) CJ010_22805 PF01966 HD domain CJ010_22810 PF12848 ABC transporter CJ010_22810 PF00005 ABC transporter CJ010_22820 PF01323 DSBA-like thioredoxin domain CJ010_22830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_22830 PF03466 LysR substrate binding domain CJ010_22840 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CJ010_22840 PF01619 Proline dehydrogenase CJ010_22840 PF00171 Aldehyde dehydrogenase family CJ010_22840 PF14850 DNA-binding domain of Proline dehydrogenase CJ010_22850 PF02424 ApbE family CJ010_22855 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CJ010_22855 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CJ010_22865 PF02384 N-6 DNA Methylase CJ010_22865 PF07669 Eco57I restriction-modification methylase CJ010_22870 PF01814 Hemerythrin HHE cation binding domain CJ010_22920 PF00465 Iron-containing alcohol dehydrogenase CJ010_22925 PF07969 Amidohydrolase family CJ010_22935 PF01476 LysM domain CJ010_22935 PF04972 BON domain CJ010_22955 PF03793 PASTA domain CJ010_22955 PF00069 Protein kinase domain CJ010_22970 PF00990 Diguanylate cyclase, GGDEF domain CJ010_22980 PF00005 ABC transporter CJ010_22980 PF12848 ABC transporter CJ010_22985 PF03610 PTS system fructose IIA component CJ010_22990 PF00381 PTS HPr component phosphorylation site CJ010_22995 PF02896 PEP-utilising enzyme, TIM barrel domain CJ010_22995 PF05524 PEP-utilising enzyme, N-terminal CJ010_22995 PF00391 PEP-utilising enzyme, mobile domain CJ010_23005 PF00589 Phage integrase family CJ010_23005 PF14659 Phage integrase, N-terminal SAM-like domain CJ010_23005 PF13356 Arm DNA-binding domain CJ010_23080 PF04002 RadC-like JAB domain CJ010_23145 PF00271 Helicase conserved C-terminal domain CJ010_23145 PF00176 SNF2 family N-terminal domain CJ010_23150 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_23155 PF00082 Subtilase family CJ010_23165 PF18273 Type III R-M EcoP15I C-terminal domain CJ010_23165 PF01555 DNA methylase CJ010_23170 PF08774 VRR-NUC domain CJ010_23170 PF04851 Type III restriction enzyme, res subunit CJ010_23180 PF08148 DSHCT (NUC185) domain CJ010_23180 PF00270 DEAD/DEAH box helicase CJ010_23180 PF00271 Helicase conserved C-terminal domain CJ010_23245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_23245 PF00512 His Kinase A (phospho-acceptor) domain CJ010_23245 PF00672 HAMP domain CJ010_23250 PF00486 Transcriptional regulatory protein, C terminal CJ010_23250 PF00072 Response regulator receiver domain CJ010_23270 PF07732 Multicopper oxidase CJ010_23270 PF07731 Multicopper oxidase CJ010_23270 PF00394 Multicopper oxidase CJ010_23295 PF00873 AcrB/AcrD/AcrF family CJ010_23310 PF04945 YHS domain CJ010_23325 PF11525 Copper resistance protein K CJ010_23355 PF02371 Transposase IS116/IS110/IS902 family CJ010_23355 PF01548 Transposase CJ010_23365 PF00072 Response regulator receiver domain CJ010_23370 PF11525 Copper resistance protein K CJ010_23380 PF06067 Domain of unknown function (DUF932) CJ010_23425 PF01751 Toprim domain CJ010_23425 PF01131 DNA topoisomerase CJ010_23470 PF13614 AAA domain CJ010_23490 PF03466 LysR substrate binding domain CJ010_23490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_23500 PF13411 MerR HTH family regulatory protein CJ010_23505 PF00403 Heavy-metal-associated domain CJ010_23510 PF01252 Signal peptidase (SPase) II CJ010_23525 PF08534 Redoxin CJ010_23535 PF17761 DUF1016 N-terminal domain CJ010_23535 PF06250 YhcG PDDEXK nuclease domain CJ010_23550 PF06067 Domain of unknown function (DUF932) CJ010_23555 PF02195 ParB-like nuclease domain CJ010_23565 PF06803 Protein of unknown function (DUF1232) CJ010_23575 PF05284 Protein of unknown function (DUF736) CJ010_23580 PF01381 Helix-turn-helix CJ010_23610 PF13614 AAA domain CJ010_23625 PF10502 Signal peptidase, peptidase S26 CJ010_23640 PF13411 MerR HTH family regulatory protein CJ010_23645 PF00403 Heavy-metal-associated domain CJ010_23670 PF02321 Outer membrane efflux protein CJ010_23675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJ010_23675 PF00529 HlyD membrane-fusion protein of T1SS CJ010_23680 PF00873 AcrB/AcrD/AcrF family CJ010_23685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_23685 PF03466 LysR substrate binding domain CJ010_23705 PF05717 IS66 Orf2 like protein CJ010_23710 PF13005 zinc-finger binding domain of transposase IS66 CJ010_23710 PF13007 Transposase C of IS166 homeodomain CJ010_23710 PF13817 IS66 C-terminal element CJ010_23710 PF03050 Transposase IS66 family CJ010_23730 PF00437 Type II/IV secretion system protein CJ010_23735 PF04956 TrbC/VIRB2 family CJ010_23745 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CJ010_23760 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CJ010_23770 PF03524 Conjugal transfer protein CJ010_23775 PF03743 Bacterial conjugation TrbI-like protein CJ010_23785 PF03918 Cytochrome C biogenesis protein CJ010_23795 PF02600 Disulfide bond formation protein DsbB CJ010_23810 PF02600 Disulfide bond formation protein DsbB CJ010_23815 PF00512 His Kinase A (phospho-acceptor) domain CJ010_23815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_23815 PF00672 HAMP domain CJ010_23820 PF00072 Response regulator receiver domain CJ010_23820 PF00486 Transcriptional regulatory protein, C terminal CJ010_23850 PF00873 AcrB/AcrD/AcrF family CJ010_23870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_23870 PF03466 LysR substrate binding domain CJ010_23890 PF03060 Nitronate monooxygenase CJ010_23895 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CJ010_23895 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJ010_23900 PF00374 Nickel-dependent hydrogenase CJ010_23905 PF01292 Prokaryotic cytochrome b561 CJ010_23915 PF00255 Glutathione peroxidase CJ010_23925 PF01750 Hydrogenase maturation protease CJ010_23930 PF01455 HupF/HypC family CJ010_23935 PF07449 Hydrogenase-1 expression protein HyaE CJ010_23940 PF04809 HupH hydrogenase expression protein, C-terminal conserved region CJ010_23945 PF00301 Rubredoxin CJ010_23950 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CJ010_23960 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CJ010_23965 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJ010_23970 PF07503 HypF finger CJ010_23970 PF00708 Acylphosphatase CJ010_23970 PF17788 HypF Kae1-like domain CJ010_23970 PF01300 Telomere recombination CJ010_23975 PF01455 HupF/HypC family CJ010_23980 PF01924 Hydrogenase formation hypA family CJ010_23985 PF00586 AIR synthase related protein, N-terminal domain CJ010_23985 PF02769 AIR synthase related protein, C-terminal domain CJ010_23990 PF00072 Response regulator receiver domain CJ010_23990 PF00158 Sigma-54 interaction domain CJ010_23990 PF02954 Bacterial regulatory protein, Fis family CJ010_24000 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CJ010_24000 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJ010_24010 PF00374 Nickel-dependent hydrogenase CJ010_24015 PF17151 Periplasmic sensor domain CJ010_24015 PF00990 Diguanylate cyclase, GGDEF domain CJ010_24020 PF02743 Cache domain CJ010_24020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_24020 PF00512 His Kinase A (phospho-acceptor) domain CJ010_24025 PF01613 Flavin reductase like domain CJ010_24030 PF00633 Helix-hairpin-helix motif CJ010_24030 PF00730 HhH-GPD superfamily base excision DNA repair protein CJ010_24030 PF14815 NUDIX domain CJ010_24040 PF02441 Flavoprotein CJ010_24065 PF02653 Branched-chain amino acid transport system / permease component CJ010_24065 PF11862 Domain of unknown function (DUF3382) CJ010_24070 PF02653 Branched-chain amino acid transport system / permease component CJ010_24080 PF01741 Large-conductance mechanosensitive channel, MscL CJ010_24085 PF00753 Metallo-beta-lactamase superfamily CJ010_24090 PF12849 PBP superfamily domain CJ010_24095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_24095 PF03459 TOBE domain CJ010_24115 PF07715 TonB-dependent Receptor Plug Domain CJ010_24115 PF00593 TonB dependent receptor CJ010_24120 PF00005 ABC transporter CJ010_24120 PF03459 TOBE domain CJ010_24125 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_24135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_24135 PF03459 TOBE domain CJ010_24140 PF03459 TOBE domain CJ010_24140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_24145 PF08402 TOBE domain CJ010_24145 PF00005 ABC transporter CJ010_24165 PF00528 Binding-protein-dependent transport system inner membrane component CJ010_24180 PF05170 AsmA family CJ010_24185 PF00563 EAL domain CJ010_24185 PF00990 Diguanylate cyclase, GGDEF domain CJ010_24185 PF03707 Bacterial signalling protein N terminal repeat CJ010_24190 PF13538 UvrD-like helicase C-terminal domain CJ010_24195 PF00580 UvrD/REP helicase N-terminal domain CJ010_24195 PF13361 UvrD-like helicase C-terminal domain CJ010_24195 PF12705 PD-(D/E)XK nuclease superfamily CJ010_24200 PF02675 S-adenosylmethionine decarboxylase CJ010_24230 PF00593 TonB dependent receptor CJ010_24230 PF07715 TonB-dependent Receptor Plug Domain CJ010_24235 PF05175 Methyltransferase small domain CJ010_24250 PF00245 Alkaline phosphatase CJ010_24260 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJ010_24260 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJ010_24260 PF00378 Enoyl-CoA hydratase/isomerase CJ010_24265 PF17946 RecC C-terminal domain CJ010_24285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJ010_24285 PF03466 LysR substrate binding domain CJ010_24290 PF00180 Isocitrate/isopropylmalate dehydrogenase CJ010_24300 PF12843 Putative quorum-sensing-regulated virulence factor CJ010_24305 PF01914 MarC family integral membrane protein CJ010_24320 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJ010_24320 PF13360 PQQ-like domain CJ010_24330 PF00676 Dehydrogenase E1 component CJ010_24335 PF02779 Transketolase, pyrimidine binding domain CJ010_24335 PF02780 Transketolase, C-terminal domain CJ010_24345 PF00364 Biotin-requiring enzyme CJ010_24345 PF02817 e3 binding domain CJ010_24345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJ010_24350 PF03099 Biotin/lipoate A/B protein ligase family CJ010_24360 PF00732 GMC oxidoreductase CJ010_24360 PF05199 GMC oxidoreductase CJ010_24370 PF00158 Sigma-54 interaction domain CJ010_24370 PF02954 Bacterial regulatory protein, Fis family CJ010_24370 PF01590 GAF domain CJ010_24375 PF04717 Type VI secretion system, phage-baseplate injector CJ010_24440 PF00211 Adenylate and Guanylate cyclase catalytic domain CJ010_24440 PF00069 Protein kinase domain CJ010_24455 PF00691 OmpA family CJ010_24455 PF13677 Membrane MotB of proton-channel complex MotA/MotB CJ010_24485 PF05638 Type VI secretion system effector, Hcp CJ010_24515 PF10431 C-terminal, D2-small domain, of ClpB protein CJ010_24515 PF07724 AAA domain (Cdc48 subfamily) CJ010_24515 PF00004 ATPase family associated with various cellular activities (AAA) CJ010_24515 PF17871 AAA lid domain CJ010_24540 PF03793 PASTA domain CJ010_24540 PF00069 Protein kinase domain CJ010_24555 PF00109 Beta-ketoacyl synthase, N-terminal domain CJ010_24555 PF02801 Beta-ketoacyl synthase, C-terminal domain CJ010_24575 PF00999 Sodium/hydrogen exchanger family CJ010_24580 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJ010_24605 PF04820 Tryptophan halogenase CJ010_24615 PF01037 Lrp/AsnC ligand binding domain CJ010_24620 PF01266 FAD dependent oxidoreductase CJ010_24625 PF01168 Alanine racemase, N-terminal domain CJ010_24625 PF00842 Alanine racemase, C-terminal domain CJ010_24640 PF03918 Cytochrome C biogenesis protein CJ010_24645 PF08534 Redoxin CJ010_24650 PF01578 Cytochrome C assembly protein CJ010_24650 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CJ010_24655 PF03100 CcmE CJ010_24665 PF01578 Cytochrome C assembly protein CJ010_24670 PF03379 CcmB protein CJ010_24675 PF00005 ABC transporter CJ010_24680 PF08447 PAS fold CJ010_24680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJ010_24685 PF03264 NapC/NirT cytochrome c family, N-terminal region CJ010_24690 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CJ010_24695 PF12801 4Fe-4S binding domain CJ010_24695 PF13237 4Fe-4S dicluster domain CJ010_24700 PF12800 4Fe-4S binding domain CJ010_24700 PF12838 4Fe-4S dicluster domain CJ010_24705 PF01568 Molydopterin dinucleotide binding domain CJ010_24705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJ010_24705 PF00384 Molybdopterin oxidoreductase CJ010_24720 PF00196 Bacterial regulatory proteins, luxR family CJ010_24720 PF00072 Response regulator receiver domain CJ010_24725 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CJ010_24725 PF07730 Histidine kinase CJ010_24725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_24725 PF00672 HAMP domain CJ010_24730 PF00325 Bacterial regulatory proteins, crp family CJ010_24730 PF00027 Cyclic nucleotide-binding domain CJ010_24735 PF00929 Exonuclease CJ010_24740 PF01209 ubiE/COQ5 methyltransferase family CJ010_24750 PF04607 Region found in RelA / SpoT proteins CJ010_24750 PF13291 ACT domain CJ010_24750 PF02824 TGS domain CJ010_24755 PF01192 RNA polymerase Rpb6 CJ010_24760 PF00625 Guanylate kinase CJ010_24775 PF01336 OB-fold nucleic acid binding domain CJ010_24775 PF02811 PHP domain CJ010_24775 PF14579 Helix-hairpin-helix motif CJ010_24775 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJ010_24775 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJ010_24785 PF13411 MerR HTH family regulatory protein CJ010_24790 PF03755 YicC-like family, N-terminal region CJ010_24790 PF08340 Domain of unknown function (DUF1732) CJ010_24795 PF00069 Protein kinase domain CJ010_24805 PF01138 3' exoribonuclease family, domain 1 CJ010_24805 PF03725 3' exoribonuclease family, domain 2 CJ010_24810 PF01725 Ham1 family CJ010_24815 PF04055 Radical SAM superfamily CJ010_24815 PF06969 HemN C-terminal domain CJ010_24825 PF01343 Peptidase family S49 CJ010_24830 PF02390 Putative methyltransferase CJ010_24835 PF05690 Thiazole biosynthesis protein ThiG CJ010_24840 PF05690 Thiazole biosynthesis protein ThiG CJ010_24840 PF02597 ThiS family CJ010_24850 PF00392 Bacterial regulatory proteins, gntR family CJ010_24850 PF07729 FCD domain CJ010_24860 PF00857 Isochorismatase family CJ010_24870 PF00857 Isochorismatase family CJ010_24885 PF02608 ABC transporter substrate-binding protein PnrA-like CJ010_24890 PF01425 Amidase CJ010_24895 PF00561 alpha/beta hydrolase fold CJ010_24900 PF07021 Methionine biosynthesis protein MetW CJ010_24900 PF00561 alpha/beta hydrolase fold CJ010_24905 PF01471 Putative peptidoglycan binding domain CJ010_24905 PF01510 N-acetylmuramoyl-L-alanine amidase CJ010_24920 PF07690 Major Facilitator Superfamily CJ010_24930 PF00484 Carbonic anhydrase CJ010_24935 PF00270 DEAD/DEAH box helicase CJ010_24935 PF00271 Helicase conserved C-terminal domain CJ010_24935 PF17764 3′ DNA-binding domain (3′BD) CJ010_24935 PF18074 Primosomal protein N C-terminal domain CJ010_24935 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CJ010_24940 PF01208 Uroporphyrinogen decarboxylase (URO-D) CJ010_24945 PF02386 Cation transport protein CJ010_24950 PF02254 TrkA-N domain CJ010_24950 PF02080 TrkA-C domain CJ010_24955 PF00072 Response regulator receiver domain CJ010_24955 PF02954 Bacterial regulatory protein, Fis family CJ010_24955 PF00158 Sigma-54 interaction domain CJ010_24960 PF00672 HAMP domain CJ010_24960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJ010_24970 PF01189 16S rRNA methyltransferase RsmB/F CJ010_24970 PF01029 NusB family CJ010_24975 PF17284 Spermidine synthase tetramerisation domain CJ010_24980 PF01925 Sulfite exporter TauE/SafE CJ010_24985 PF01926 50S ribosome-binding GTPase CJ010_24985 PF10396 GTP-binding protein TrmE N-terminus CJ010_24985 PF12631 MnmE helical domain CJ010_24990 PF14849 YidC periplasmic domain CJ010_24990 PF02096 60Kd inner membrane protein CJ010_24995 PF01809 Putative membrane protein insertion efficiency factor CJ010_25000 PF00825 Ribonuclease P CJ010_25005 PF00468 Ribosomal protein L34