locus-tag class description CDA09_00005 PF00468 Ribosomal protein L34 CDA09_00010 PF00308 Bacterial dnaA protein CDA09_00010 PF11638 DnaA N-terminal domain CDA09_00010 PF08299 Bacterial dnaA protein helix-turn-helix CDA09_00015 PF02768 DNA polymerase III beta subunit, C-terminal domain CDA09_00015 PF00712 DNA polymerase III beta subunit, N-terminal domain CDA09_00015 PF02767 DNA polymerase III beta subunit, central domain CDA09_00020 PF00204 DNA gyrase B CDA09_00020 PF00986 DNA gyrase B subunit, carboxyl terminus CDA09_00020 PF18053 DNA gyrase B subunit insert domain CDA09_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_00020 PF01751 Toprim domain CDA09_00040 PF01695 IstB-like ATP binding protein CDA09_00045 PF00665 Integrase core domain CDA09_00060 PF02661 Fic/DOC family CDA09_00060 PF13784 Fic/DOC family N-terminal CDA09_00065 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CDA09_00085 PF00360 Phytochrome region CDA09_00085 PF00990 Diguanylate cyclase, GGDEF domain CDA09_00085 PF01590 GAF domain CDA09_00085 PF00563 EAL domain CDA09_00095 PF03358 NADPH-dependent FMN reductase CDA09_00105 PF00563 EAL domain CDA09_00105 PF00990 Diguanylate cyclase, GGDEF domain CDA09_00105 PF03707 Bacterial signalling protein N terminal repeat CDA09_00120 PF00005 ABC transporter CDA09_00125 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CDA09_00125 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CDA09_00130 PF01966 HD domain CDA09_00130 PF11871 Domain of unknown function (DUF3391) CDA09_00140 PF00990 Diguanylate cyclase, GGDEF domain CDA09_00140 PF05230 MASE2 domain CDA09_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_00145 PF03466 LysR substrate binding domain CDA09_00150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_00150 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_00150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_00155 PF02515 CoA-transferase family III CDA09_00160 PF00990 Diguanylate cyclase, GGDEF domain CDA09_00160 PF00563 EAL domain CDA09_00160 PF03707 Bacterial signalling protein N terminal repeat CDA09_00165 PF04381 Putative exonuclease, RdgC CDA09_00175 PF01479 S4 domain CDA09_00175 PF00849 RNA pseudouridylate synthase CDA09_00185 PF09285 Elongation factor P, C-terminal CDA09_00185 PF08207 Elongation factor P (EF-P) KOW-like domain CDA09_00185 PF01132 Elongation factor P (EF-P) OB domain CDA09_00195 PF17760 UvrA interaction domain CDA09_00195 PF00005 ABC transporter CDA09_00195 PF17755 UvrA DNA-binding domain CDA09_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_00210 PF03466 LysR substrate binding domain CDA09_00225 PF13180 PDZ domain CDA09_00230 PF07715 TonB-dependent Receptor Plug Domain CDA09_00230 PF00593 TonB dependent receptor CDA09_00235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_00235 PF03466 LysR substrate binding domain CDA09_00240 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_00240 PF18113 Rubredoxin binding C-terminal domain CDA09_00245 PF01131 DNA topoisomerase CDA09_00245 PF01751 Toprim domain CDA09_00250 PF04361 Protein of unknown function (DUF494) CDA09_00255 PF17782 DprA winged helix domain CDA09_00255 PF02481 DNA recombination-mediator protein A CDA09_00265 PF01327 Polypeptide deformylase CDA09_00270 PF02911 Formyl transferase, C-terminal domain CDA09_00270 PF00551 Formyl transferase CDA09_00275 PF01435 Peptidase family M48 CDA09_00280 PF00989 PAS fold CDA09_00280 PF00512 His Kinase A (phospho-acceptor) domain CDA09_00280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_00285 PF00158 Sigma-54 interaction domain CDA09_00285 PF02954 Bacterial regulatory protein, Fis family CDA09_00285 PF00072 Response regulator receiver domain CDA09_00290 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CDA09_00310 PF12804 MobA-like NTP transferase domain CDA09_00315 PF02634 FdhD/NarQ family CDA09_00330 PF08331 Domain of unknown function (DUF1730) CDA09_00345 PF00384 Molybdopterin oxidoreductase CDA09_00345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_00345 PF12838 4Fe-4S dicluster domain CDA09_00345 PF01568 Molydopterin dinucleotide binding domain CDA09_00345 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDA09_00350 PF13247 4Fe-4S dicluster domain CDA09_00365 PF08534 Redoxin CDA09_00405 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDA09_00410 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_00415 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_00420 PF00005 ABC transporter CDA09_00425 PF03831 PhnA domain CDA09_00425 PF08274 PhnA Zinc-Ribbon CDA09_00440 PF13932 GidA associated domain CDA09_00440 PF01134 Glucose inhibited division protein A CDA09_00445 PF02527 rRNA small subunit methyltransferase G CDA09_00450 PF13614 AAA domain CDA09_00455 PF17762 HTH domain found in ParB protein CDA09_00455 PF02195 ParB-like nuclease domain CDA09_00465 PF00119 ATP synthase A chain CDA09_00470 PF00137 ATP synthase subunit C CDA09_00475 PF00430 ATP synthase B/B' CF(0) CDA09_00480 PF00213 ATP synthase delta (OSCP) subunit CDA09_00485 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDA09_00485 PF00306 ATP synthase alpha/beta chain, C terminal domain CDA09_00485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDA09_00490 PF00231 ATP synthase CDA09_00495 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDA09_00495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDA09_00500 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CDA09_00500 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CDA09_00515 PF01209 ubiE/COQ5 methyltransferase family CDA09_00525 PF00486 Transcriptional regulatory protein, C terminal CDA09_00525 PF00072 Response regulator receiver domain CDA09_00530 PF11808 Phosphate regulon sensor protein PhoR CDA09_00530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_00530 PF00989 PAS fold CDA09_00530 PF00512 His Kinase A (phospho-acceptor) domain CDA09_00545 PF13230 Glutamine amidotransferases class-II CDA09_00550 PF02637 GatB domain CDA09_00550 PF02934 GatB/GatE catalytic domain CDA09_00560 PF01425 Amidase CDA09_00565 PF02686 Glu-tRNAGln amidotransferase C subunit CDA09_00585 PF03717 Penicillin-binding Protein dimerisation domain CDA09_00585 PF00905 Penicillin binding protein transpeptidase domain CDA09_00590 PF01098 Cell cycle protein CDA09_00595 PF03330 Lytic transglycolase CDA09_00595 PF05036 Sporulation related domain CDA09_00600 PF07943 Penicillin-binding protein 5, C-terminal domain CDA09_00600 PF00768 D-alanyl-D-alanine carboxypeptidase CDA09_00605 PF01063 Amino-transferase class IV CDA09_00610 PF04359 Protein of unknown function (DUF493) CDA09_00615 PF03099 Biotin/lipoate A/B protein ligase family CDA09_00620 PF04055 Radical SAM superfamily CDA09_00620 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CDA09_00625 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDA09_00635 PF00580 UvrD/REP helicase N-terminal domain CDA09_00635 PF13361 UvrD-like helicase C-terminal domain CDA09_00640 PF02743 Cache domain CDA09_00640 PF00672 HAMP domain CDA09_00640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_00645 PF13247 4Fe-4S dicluster domain CDA09_00650 PF03916 Polysulphide reductase, NrfD CDA09_00655 PF01568 Molydopterin dinucleotide binding domain CDA09_00655 PF00384 Molybdopterin oxidoreductase CDA09_00655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_00660 PF00196 Bacterial regulatory proteins, luxR family CDA09_00660 PF00072 Response regulator receiver domain CDA09_00665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_00665 PF00512 His Kinase A (phospho-acceptor) domain CDA09_00670 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_00680 PF00072 Response regulator receiver domain CDA09_00685 PF00512 His Kinase A (phospho-acceptor) domain CDA09_00685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_00685 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDA09_00685 PF00672 HAMP domain CDA09_00685 PF00072 Response regulator receiver domain CDA09_00685 PF01627 Hpt domain CDA09_00715 PF12728 Helix-turn-helix domain CDA09_00715 PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain CDA09_00725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_00730 PF00270 DEAD/DEAH box helicase CDA09_00730 PF00271 Helicase conserved C-terminal domain CDA09_00750 PF00005 ABC transporter CDA09_00755 PF00005 ABC transporter CDA09_00755 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_00760 PF11862 Domain of unknown function (DUF3382) CDA09_00760 PF02653 Branched-chain amino acid transport system / permease component CDA09_00765 PF02653 Branched-chain amino acid transport system / permease component CDA09_00770 PF13458 Periplasmic binding protein CDA09_00775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_00775 PF03466 LysR substrate binding domain CDA09_00790 PF05724 Thiopurine S-methyltransferase (TPMT) CDA09_00810 PF07690 Major Facilitator Superfamily CDA09_00825 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_00825 PF17862 AAA+ lid domain CDA09_00825 PF06480 FtsH Extracellular CDA09_00825 PF01434 Peptidase family M41 CDA09_00840 PF05958 tRNA (Uracil-5-)-methyltransferase CDA09_00855 PF00182 Chitinase class I CDA09_00865 PF13416 Bacterial extracellular solute-binding protein CDA09_00870 PF08402 TOBE domain CDA09_00870 PF00005 ABC transporter CDA09_00875 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_00880 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_00885 PF00664 ABC transporter transmembrane region CDA09_00885 PF00005 ABC transporter CDA09_00895 PF09828 Chromate resistance exported protein CDA09_00900 PF02417 Chromate transporter CDA09_00910 PF09828 Chromate resistance exported protein CDA09_00915 PF00072 Response regulator receiver domain CDA09_00915 PF00486 Transcriptional regulatory protein, C terminal CDA09_00930 PF00512 His Kinase A (phospho-acceptor) domain CDA09_00930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_00930 PF00672 HAMP domain CDA09_00935 PF00005 ABC transporter CDA09_00950 PF05433 Glycine zipper 2TM domain CDA09_00965 PF17946 RecC C-terminal domain CDA09_00970 PF12705 PD-(D/E)XK nuclease superfamily CDA09_00970 PF00580 UvrD/REP helicase N-terminal domain CDA09_00970 PF13361 UvrD-like helicase C-terminal domain CDA09_00975 PF13538 UvrD-like helicase C-terminal domain CDA09_00980 PF00989 PAS fold CDA09_00980 PF00512 His Kinase A (phospho-acceptor) domain CDA09_00980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_00985 PF02954 Bacterial regulatory protein, Fis family CDA09_00985 PF00072 Response regulator receiver domain CDA09_00985 PF00158 Sigma-54 interaction domain CDA09_00990 PF00482 Type II secretion system (T2SS), protein F CDA09_00995 PF08334 Type II secretion system (T2SS), protein G CDA09_00995 PF07963 Prokaryotic N-terminal methylation motif CDA09_01000 PF01464 Transglycosylase SLT domain CDA09_01000 PF10145 Phage-related minor tail protein CDA09_01000 PF01551 Peptidase family M23 CDA09_01045 PF02954 Bacterial regulatory protein, Fis family CDA09_01045 PF00072 Response regulator receiver domain CDA09_01045 PF00158 Sigma-54 interaction domain CDA09_01050 PF00437 Type II/IV secretion system protein CDA09_01075 PF03958 Bacterial type II/III secretion system short domain CDA09_01075 PF00263 Bacterial type II and III secretion system protein CDA09_01080 PF07963 Prokaryotic N-terminal methylation motif CDA09_01080 PF08334 Type II secretion system (T2SS), protein G CDA09_01085 PF00114 Pilin (bacterial filament) CDA09_01085 PF07963 Prokaryotic N-terminal methylation motif CDA09_01095 PF00313 'Cold-shock' DNA-binding domain CDA09_01105 PF01145 SPFH domain / Band 7 family CDA09_01105 PF16200 C-terminal region of band_7 CDA09_01135 PF07690 Major Facilitator Superfamily CDA09_01145 PF01841 Transglutaminase-like superfamily CDA09_01150 PF00578 AhpC/TSA family CDA09_01160 PF05981 CreA protein CDA09_01170 PF01323 DSBA-like thioredoxin domain CDA09_01175 PF00226 DnaJ domain CDA09_01175 PF01556 DnaJ C terminal domain CDA09_01200 PF00625 Guanylate kinase CDA09_01205 PF01192 RNA polymerase Rpb6 CDA09_01210 PF04607 Region found in RelA / SpoT proteins CDA09_01210 PF02824 TGS domain CDA09_01210 PF13291 ACT domain CDA09_01215 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDA09_01215 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDA09_01220 PF00392 Bacterial regulatory proteins, gntR family CDA09_01220 PF00155 Aminotransferase class I and II CDA09_01235 PF14480 DNA polymerase III polC-type N-terminus I CDA09_01235 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDA09_01235 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDA09_01235 PF14579 Helix-hairpin-helix motif CDA09_01235 PF02811 PHP domain CDA09_01235 PF00929 Exonuclease CDA09_01235 PF11490 DNA polymerase III polC-type N-terminus II CDA09_01245 PF00672 HAMP domain CDA09_01245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_01245 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CDA09_01245 PF07730 Histidine kinase CDA09_01250 PF00072 Response regulator receiver domain CDA09_01250 PF00196 Bacterial regulatory proteins, luxR family CDA09_01265 PF00384 Molybdopterin oxidoreductase CDA09_01265 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_01265 PF01568 Molydopterin dinucleotide binding domain CDA09_01270 PF12838 4Fe-4S dicluster domain CDA09_01270 PF12800 4Fe-4S binding domain CDA09_01275 PF12837 4Fe-4S binding domain CDA09_01275 PF12801 4Fe-4S binding domain CDA09_01280 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CDA09_01285 PF03264 NapC/NirT cytochrome c family, N-terminal region CDA09_01290 PF00005 ABC transporter CDA09_01295 PF03379 CcmB protein CDA09_01300 PF01578 Cytochrome C assembly protein CDA09_01305 PF04995 Heme exporter protein D (CcmD) CDA09_01310 PF03100 CcmE CDA09_01315 PF01578 Cytochrome C assembly protein CDA09_01315 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CDA09_01320 PF08534 Redoxin CDA09_01325 PF03918 Cytochrome C biogenesis protein CDA09_01330 PF03918 Cytochrome C biogenesis protein CDA09_01345 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_01355 PF00072 Response regulator receiver domain CDA09_01355 PF02954 Bacterial regulatory protein, Fis family CDA09_01355 PF00158 Sigma-54 interaction domain CDA09_01360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_01360 PF00512 His Kinase A (phospho-acceptor) domain CDA09_01375 PF08534 Redoxin CDA09_01385 PF01578 Cytochrome C assembly protein CDA09_01415 PF01578 Cytochrome C assembly protein CDA09_01470 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_01475 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_01480 PF00034 Cytochrome c CDA09_01480 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_01480 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CDA09_01500 PF00535 Glycosyl transferase family 2 CDA09_01505 PF14667 Polysaccharide biosynthesis C-terminal domain CDA09_01505 PF01943 Polysaccharide biosynthesis protein CDA09_01515 PF00535 Glycosyl transferase family 2 CDA09_01520 PF00535 Glycosyl transferase family 2 CDA09_01525 PF01370 NAD dependent epimerase/dehydratase family CDA09_01545 PF00990 Diguanylate cyclase, GGDEF domain CDA09_01545 PF08448 PAS fold CDA09_01555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDA09_01560 PF04055 Radical SAM superfamily CDA09_01560 PF02310 B12 binding domain CDA09_01570 PF00563 EAL domain CDA09_01570 PF00990 Diguanylate cyclase, GGDEF domain CDA09_01570 PF03707 Bacterial signalling protein N terminal repeat CDA09_01575 PF00842 Alanine racemase, C-terminal domain CDA09_01575 PF01168 Alanine racemase, N-terminal domain CDA09_01580 PF01266 FAD dependent oxidoreductase CDA09_01585 PF01037 Lrp/AsnC ligand binding domain CDA09_01605 PF00884 Sulfatase CDA09_01625 PF03707 Bacterial signalling protein N terminal repeat CDA09_01625 PF00990 Diguanylate cyclase, GGDEF domain CDA09_01625 PF00563 EAL domain CDA09_01630 PF01339 CheB methylesterase CDA09_01630 PF01739 CheR methyltransferase, SAM binding domain CDA09_01630 PF03705 CheR methyltransferase, all-alpha domain CDA09_01630 PF08448 PAS fold CDA09_01635 PF01584 CheW-like domain CDA09_01640 PF17202 Single cache domain 3 CDA09_01640 PF00672 HAMP domain CDA09_01640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_01645 PF00072 Response regulator receiver domain CDA09_01645 PF01627 Hpt domain CDA09_01645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_01645 PF01584 CheW-like domain CDA09_01650 PF00072 Response regulator receiver domain CDA09_01650 PF01339 CheB methylesterase CDA09_01655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_01655 PF00512 His Kinase A (phospho-acceptor) domain CDA09_01655 PF02743 Cache domain CDA09_01660 PF00563 EAL domain CDA09_01660 PF00990 Diguanylate cyclase, GGDEF domain CDA09_01660 PF03707 Bacterial signalling protein N terminal repeat CDA09_01670 PF00171 Aldehyde dehydrogenase family CDA09_01675 PF00378 Enoyl-CoA hydratase/isomerase CDA09_01680 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_01680 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_01680 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CDA09_01685 PF03061 Thioesterase superfamily CDA09_01695 PF05138 Phenylacetic acid catabolic protein CDA09_01700 PF06243 Phenylacetic acid degradation B CDA09_01705 PF05138 Phenylacetic acid catabolic protein CDA09_01710 PF01883 Iron-sulfur cluster assembly protein CDA09_01715 PF00970 Oxidoreductase FAD-binding domain CDA09_01715 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_01715 PF00175 Oxidoreductase NAD-binding domain CDA09_01725 PF13458 Periplasmic binding protein CDA09_01735 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_01735 PF00005 ABC transporter CDA09_01740 PF00005 ABC transporter CDA09_01755 PF03466 LysR substrate binding domain CDA09_01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_01765 PF01661 Macro domain CDA09_01770 PF00171 Aldehyde dehydrogenase family CDA09_01775 PF00202 Aminotransferase class-III CDA09_01780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_01780 PF03466 LysR substrate binding domain CDA09_01785 PF00216 Bacterial DNA-binding protein CDA09_01790 PF00271 Helicase conserved C-terminal domain CDA09_01790 PF00270 DEAD/DEAH box helicase CDA09_01795 PF01029 NusB family CDA09_01800 PF00885 6,7-dimethyl-8-ribityllumazine synthase CDA09_01805 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CDA09_01805 PF00925 GTP cyclohydrolase II CDA09_01810 PF00677 Lumazine binding domain CDA09_01815 PF11412 Disulphide bond corrector protein DsbC CDA09_01815 PF02683 Cytochrome C biogenesis protein transmembrane region CDA09_01835 PF00486 Transcriptional regulatory protein, C terminal CDA09_01835 PF00072 Response regulator receiver domain CDA09_01840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_01850 PF00072 Response regulator receiver domain CDA09_01850 PF17149 Periplasmic sensor domain found in signal transduction proteins CDA09_01850 PF00672 HAMP domain CDA09_01850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_01850 PF01627 Hpt domain CDA09_01850 PF00512 His Kinase A (phospho-acceptor) domain CDA09_01855 PF13458 Periplasmic binding protein CDA09_01865 PF04397 LytTr DNA-binding domain CDA09_01865 PF00072 Response regulator receiver domain CDA09_01875 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDA09_01875 PF01627 Hpt domain CDA09_01875 PF00512 His Kinase A (phospho-acceptor) domain CDA09_01875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_01875 PF00672 HAMP domain CDA09_01875 PF00072 Response regulator receiver domain CDA09_01880 PF01590 GAF domain CDA09_01880 PF00360 Phytochrome region CDA09_01880 PF00990 Diguanylate cyclase, GGDEF domain CDA09_01880 PF00563 EAL domain CDA09_01890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_01890 PF03466 LysR substrate binding domain CDA09_01895 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CDA09_01915 PF00175 Oxidoreductase NAD-binding domain CDA09_01915 PF00970 Oxidoreductase FAD-binding domain CDA09_01930 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDA09_01935 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDA09_01945 PF00510 Cytochrome c oxidase subunit III CDA09_01960 PF03741 Integral membrane protein TerC family CDA09_01975 PF09350 Domain of unknown function (DUF1992) CDA09_01980 PF01061 ABC-2 type transporter CDA09_01990 PF00043 Glutathione S-transferase, C-terminal domain CDA09_01990 PF13417 Glutathione S-transferase, N-terminal domain CDA09_01995 PF12697 Alpha/beta hydrolase family CDA09_02040 PF00563 EAL domain CDA09_02040 PF00990 Diguanylate cyclase, GGDEF domain CDA09_02040 PF03707 Bacterial signalling protein N terminal repeat CDA09_02045 PF03190 Protein of unknown function, DUF255 CDA09_02065 PF12849 PBP superfamily domain CDA09_02075 PF00005 ABC transporter CDA09_02080 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_02085 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_02090 PF12849 PBP superfamily domain CDA09_02100 PF02625 XdhC and CoxI family CDA09_02100 PF13478 XdhC Rossmann domain CDA09_02105 PF00941 FAD binding domain in molybdopterin dehydrogenase CDA09_02105 PF03450 CO dehydrogenase flavoprotein C-terminal domain CDA09_02110 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDA09_02110 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDA09_02115 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_02115 PF01799 [2Fe-2S] binding domain CDA09_02120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_02130 PF00732 GMC oxidoreductase CDA09_02130 PF05199 GMC oxidoreductase CDA09_02145 PF00202 Aminotransferase class-III CDA09_02150 PF03109 ABC1 family CDA09_02155 PF00750 tRNA synthetases class I (R) CDA09_02155 PF05746 DALR anticodon binding domain CDA09_02155 PF03485 Arginyl tRNA synthetase N terminal domain CDA09_02165 PF01323 DSBA-like thioredoxin domain CDA09_02170 PF00106 short chain dehydrogenase CDA09_02175 PF05088 Bacterial NAD-glutamate dehydrogenase CDA09_02185 PF01136 Peptidase family U32 CDA09_02185 PF12392 Collagenase CDA09_02230 PF02705 K+ potassium transporter CDA09_02235 PF01497 Periplasmic binding protein CDA09_02245 PF00561 alpha/beta hydrolase fold CDA09_02245 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CDA09_02250 PF00753 Metallo-beta-lactamase superfamily CDA09_02255 PF13411 MerR HTH family regulatory protein CDA09_02260 PF00484 Carbonic anhydrase CDA09_02265 PF02803 Thiolase, C-terminal domain CDA09_02265 PF00108 Thiolase, N-terminal domain CDA09_02270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_02270 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_02270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_02275 PF00378 Enoyl-CoA hydratase/isomerase CDA09_02280 PF00682 HMGL-like CDA09_02295 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDA09_02295 PF00753 Metallo-beta-lactamase superfamily CDA09_02300 PF03668 P-loop ATPase protein family CDA09_02320 PF02075 Crossover junction endodeoxyribonuclease RuvC CDA09_02335 PF00375 Sodium:dicarboxylate symporter family CDA09_02345 PF01709 Transcriptional regulator CDA09_02355 PF05872 Bacterial protein of unknown function (DUF853) CDA09_02370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_02375 PF02219 Methylenetetrahydrofolate reductase CDA09_02380 PF05221 S-adenosyl-L-homocysteine hydrolase CDA09_02380 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CDA09_02390 PF00313 'Cold-shock' DNA-binding domain CDA09_02395 PF01176 Translation initiation factor 1A / IF-1 CDA09_02405 PF00438 S-adenosylmethionine synthetase, N-terminal domain CDA09_02405 PF02772 S-adenosylmethionine synthetase, central domain CDA09_02405 PF02773 S-adenosylmethionine synthetase, C-terminal domain CDA09_02415 PF03279 Bacterial lipid A biosynthesis acyltransferase CDA09_02420 PF01678 Diaminopimelate epimerase CDA09_02430 PF00589 Phage integrase family CDA09_02430 PF02899 Phage integrase, N-terminal SAM-like domain CDA09_02440 PF17785 PUA-like domain CDA09_02440 PF10672 S-adenosylmethionine-dependent methyltransferase CDA09_02450 PF17864 RuvB AAA lid domain CDA09_02450 PF05496 Holliday junction DNA helicase RuvB P-loop domain CDA09_02450 PF05491 RuvB C-terminal winged helix domain CDA09_02455 PF01330 RuvA N terminal domain CDA09_02455 PF07499 RuvA, C-terminal domain CDA09_02465 PF10150 Ribonuclease E/G family CDA09_02465 PF00575 S1 RNA binding domain CDA09_02470 PF02545 Maf-like protein CDA09_02475 PF02590 Predicted SPOUT methyltransferase CDA09_02485 PF01467 Cytidylyltransferase-like CDA09_02500 PF01636 Phosphotransferase enzyme family CDA09_02510 PF03641 Possible lysine decarboxylase CDA09_02515 PF01367 5'-3' exonuclease, C-terminal SAM fold CDA09_02515 PF01612 3'-5' exonuclease CDA09_02515 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDA09_02515 PF00476 DNA polymerase family A CDA09_02520 PF16861 Carbamoyltransferase C-terminus CDA09_02520 PF02543 Carbamoyltransferase N-terminus CDA09_02525 PF01522 Polysaccharide deacetylase CDA09_02535 PF00534 Glycosyl transferases group 1 CDA09_02535 PF13439 Glycosyltransferase Family 4 CDA09_02540 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CDA09_02550 PF00534 Glycosyl transferases group 1 CDA09_02550 PF13439 Glycosyltransferase Family 4 CDA09_02555 PF13439 Glycosyltransferase Family 4 CDA09_02560 PF00534 Glycosyl transferases group 1 CDA09_02570 PF13537 Glutamine amidotransferase domain CDA09_02570 PF00733 Asparagine synthase CDA09_02575 PF13439 Glycosyltransferase Family 4 CDA09_02575 PF00534 Glycosyl transferases group 1 CDA09_02585 PF00005 ABC transporter CDA09_02585 PF00664 ABC transporter transmembrane region CDA09_02595 PF01370 NAD dependent epimerase/dehydratase family CDA09_02600 PF00294 pfkB family carbohydrate kinase CDA09_02600 PF01467 Cytidylyltransferase-like CDA09_02605 PF05175 Methyltransferase small domain CDA09_02605 PF17827 PrmC N-terminal domain CDA09_02610 PF02654 Cobalamin-5-phosphate synthase CDA09_02615 PF02277 Phosphoribosyltransferase CDA09_02620 PF00990 Diguanylate cyclase, GGDEF domain CDA09_02620 PF03707 Bacterial signalling protein N terminal repeat CDA09_02620 PF00563 EAL domain CDA09_02625 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CDA09_02635 PF01032 FecCD transport family CDA09_02640 PF00005 ABC transporter CDA09_02645 PF12557 Cob(I)alamin adenosyltransferase N terminal CDA09_02645 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CDA09_02650 PF10414 Sirohaem synthase dimerisation region CDA09_02650 PF14824 Sirohaem biosynthesis protein central CDA09_02650 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_02655 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDA09_02655 PF07685 CobB/CobQ-like glutamine amidotransferase domain CDA09_02660 PF03352 Methyladenine glycosylase CDA09_02665 PF03466 LysR substrate binding domain CDA09_02665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_02670 PF04336 Acyl carrier protein phosphodiesterase CDA09_02680 PF02589 LUD domain CDA09_02685 PF13183 4Fe-4S dicluster domain CDA09_02685 PF02589 LUD domain CDA09_02685 PF11870 Domain of unknown function (DUF3390) CDA09_02690 PF02754 Cysteine-rich domain CDA09_02695 PF00892 EamA-like transporter family CDA09_02705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_02705 PF03466 LysR substrate binding domain CDA09_02710 PF11842 Domain of unknown function (DUF3362) CDA09_02710 PF04055 Radical SAM superfamily CDA09_02710 PF08497 Radical SAM N-terminal CDA09_02715 PF01510 N-acetylmuramoyl-L-alanine amidase CDA09_02720 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CDA09_02720 PF01464 Transglycosylase SLT domain CDA09_02725 PF00155 Aminotransferase class I and II CDA09_02735 PF00390 Malic enzyme, N-terminal domain CDA09_02735 PF03949 Malic enzyme, NAD binding domain CDA09_02735 PF01515 Phosphate acetyl/butaryl transferase CDA09_02745 PF00768 D-alanyl-D-alanine carboxypeptidase CDA09_02755 PF01479 S4 domain CDA09_02755 PF00849 RNA pseudouridylate synthase CDA09_02765 PF00005 ABC transporter CDA09_02765 PF12704 MacB-like periplasmic core domain CDA09_02765 PF02687 FtsX-like permease family CDA09_02770 PF00005 ABC transporter CDA09_02770 PF02687 FtsX-like permease family CDA09_02770 PF12704 MacB-like periplasmic core domain CDA09_02775 PF12704 MacB-like periplasmic core domain CDA09_02775 PF02687 FtsX-like permease family CDA09_02775 PF00005 ABC transporter CDA09_02780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_02780 PF00529 HlyD membrane-fusion protein of T1SS CDA09_02785 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDA09_02785 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CDA09_02790 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CDA09_02810 PF00270 DEAD/DEAH box helicase CDA09_02810 PF00271 Helicase conserved C-terminal domain CDA09_02810 PF04408 Helicase associated domain (HA2) CDA09_02810 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CDA09_02810 PF11898 Domain of unknown function (DUF3418) CDA09_02815 PF01250 Ribosomal protein S6 CDA09_02825 PF01084 Ribosomal protein S18 CDA09_02830 PF03948 Ribosomal protein L9, C-terminal domain CDA09_02830 PF01281 Ribosomal protein L9, N-terminal domain CDA09_02835 PF00772 DnaB-like helicase N terminal domain CDA09_02835 PF03796 DnaB-like helicase C terminal domain CDA09_02865 PF07859 alpha/beta hydrolase fold CDA09_02870 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDA09_02870 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDA09_02870 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDA09_02895 PF04011 LemA family CDA09_02905 PF00107 Zinc-binding dehydrogenase CDA09_02910 PF00486 Transcriptional regulatory protein, C terminal CDA09_02910 PF00072 Response regulator receiver domain CDA09_02915 PF00501 AMP-binding enzyme CDA09_02915 PF16177 Acetyl-coenzyme A synthetase N-terminus CDA09_02915 PF13193 AMP-binding enzyme C-terminal domain CDA09_02925 PF01464 Transglycosylase SLT domain CDA09_02930 PF00482 Type II secretion system (T2SS), protein F CDA09_02935 PF00437 Type II/IV secretion system protein CDA09_02955 PF03958 Bacterial type II/III secretion system short domain CDA09_02955 PF00263 Bacterial type II and III secretion system protein CDA09_02960 PF07963 Prokaryotic N-terminal methylation motif CDA09_02960 PF08334 Type II secretion system (T2SS), protein G CDA09_02965 PF07963 Prokaryotic N-terminal methylation motif CDA09_02965 PF00114 Pilin (bacterial filament) CDA09_02975 PF01472 PUA domain CDA09_02975 PF00696 Amino acid kinase family CDA09_02980 PF01018 GTP1/OBG CDA09_02980 PF01926 50S ribosome-binding GTPase CDA09_02985 PF01016 Ribosomal L27 protein CDA09_02990 PF00829 Ribosomal prokaryotic L21 protein CDA09_02995 PF07840 FadR C-terminal domain CDA09_02995 PF00392 Bacterial regulatory proteins, gntR family CDA09_03000 PF01565 FAD binding domain CDA09_03000 PF02913 FAD linked oxidases, C-terminal domain CDA09_03005 PF01565 FAD binding domain CDA09_03010 PF13183 4Fe-4S dicluster domain CDA09_03010 PF02754 Cysteine-rich domain CDA09_03020 PF01544 CorA-like Mg2+ transporter protein CDA09_03025 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CDA09_03025 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CDA09_03030 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CDA09_03035 PF02233 NAD(P) transhydrogenase beta subunit CDA09_03045 PF03707 Bacterial signalling protein N terminal repeat CDA09_03045 PF13188 PAS domain CDA09_03045 PF00563 EAL domain CDA09_03045 PF00990 Diguanylate cyclase, GGDEF domain CDA09_03050 PF00270 DEAD/DEAH box helicase CDA09_03050 PF00271 Helicase conserved C-terminal domain CDA09_03055 PF18125 RlmM ferredoxin-like domain CDA09_03055 PF01728 FtsJ-like methyltransferase CDA09_03070 PF03009 Glycerophosphoryl diester phosphodiesterase family CDA09_03075 PF00348 Polyprenyl synthetase CDA09_03090 PF04264 YceI-like domain CDA09_03095 PF04752 ChaC-like protein CDA09_03105 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CDA09_03110 PF03264 NapC/NirT cytochrome c family, N-terminal region CDA09_03120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_03120 PF03466 LysR substrate binding domain CDA09_03125 PF17954 Quercetinase C-terminal cupin domain CDA09_03125 PF02678 Pirin CDA09_03130 PF07690 Major Facilitator Superfamily CDA09_03135 PF01546 Peptidase family M20/M25/M40 CDA09_03135 PF07687 Peptidase dimerisation domain CDA09_03140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_03140 PF03466 LysR substrate binding domain CDA09_03150 PF00873 AcrB/AcrD/AcrF family CDA09_03155 PF00529 HlyD membrane-fusion protein of T1SS CDA09_03155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_03170 PF03466 LysR substrate binding domain CDA09_03170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_03175 PF01597 Glycine cleavage H-protein CDA09_03180 PF02347 Glycine cleavage system P-protein CDA09_03185 PF00464 Serine hydroxymethyltransferase CDA09_03190 PF00324 Amino acid permease CDA09_03195 PF03313 Serine dehydratase alpha chain CDA09_03195 PF03315 Serine dehydratase beta chain CDA09_03200 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDA09_03200 PF01571 Aminomethyltransferase folate-binding domain CDA09_03205 PF04055 Radical SAM superfamily CDA09_03215 PF00551 Formyl transferase CDA09_03220 PF04715 Anthranilate synthase component I, N terminal region CDA09_03220 PF00425 chorismate binding enzyme CDA09_03225 PF02436 Conserved carboxylase domain CDA09_03225 PF02785 Biotin carboxylase C-terminal domain CDA09_03225 PF00682 HMGL-like CDA09_03225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDA09_03225 PF00289 Biotin carboxylase, N-terminal domain CDA09_03225 PF00364 Biotin-requiring enzyme CDA09_03265 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_03280 PF01575 MaoC like domain CDA09_03285 PF02649 Type I GTP cyclohydrolase folE2 CDA09_03290 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CDA09_03290 PF02779 Transketolase, pyrimidine binding domain CDA09_03290 PF02780 Transketolase, C-terminal domain CDA09_03295 PF00348 Polyprenyl synthetase CDA09_03300 PF02609 Exonuclease VII small subunit CDA09_03310 PF02401 LytB protein CDA09_03315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDA09_03320 PF01252 Signal peptidase (SPase) II CDA09_03325 PF00133 tRNA synthetases class I (I, L, M and V) CDA09_03325 PF06827 Zinc finger found in FPG and IleRS CDA09_03325 PF08264 Anticodon-binding domain of tRNA CDA09_03330 PF06574 FAD synthetase CDA09_03330 PF01687 Riboflavin kinase CDA09_03335 PF11741 AMIN domain CDA09_03335 PF01520 N-acetylmuramoyl-L-alanine amidase CDA09_03340 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CDA09_03345 PF08331 Domain of unknown function (DUF1730) CDA09_03350 PF01177 Asp/Glu/Hydantoin racemase CDA09_03355 PF00581 Rhodanese-like domain CDA09_03365 PF00892 EamA-like transporter family CDA09_03370 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDA09_03370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDA09_03375 PF01266 FAD dependent oxidoreductase CDA09_03375 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CDA09_03385 PF03466 LysR substrate binding domain CDA09_03385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_03390 PF00672 HAMP domain CDA09_03390 PF00512 His Kinase A (phospho-acceptor) domain CDA09_03390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_03390 PF16527 Two-component sensor protein CpxA, periplasmic domain CDA09_03395 PF00072 Response regulator receiver domain CDA09_03395 PF00486 Transcriptional regulatory protein, C terminal CDA09_03405 PF00463 Isocitrate lyase family CDA09_03410 PF03737 Aldolase/RraA CDA09_03415 PF07724 AAA domain (Cdc48 subfamily) CDA09_03415 PF10431 C-terminal, D2-small domain, of ClpB protein CDA09_03415 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_03415 PF02861 Clp amino terminal domain, pathogenicity island component CDA09_03415 PF17871 AAA lid domain CDA09_03420 PF02617 ATP-dependent Clp protease adaptor protein ClpS CDA09_03425 PF00313 'Cold-shock' DNA-binding domain CDA09_03430 PF00471 Ribosomal protein L33 CDA09_03435 PF00830 Ribosomal L28 family CDA09_03440 PF04002 RadC-like JAB domain CDA09_03445 PF04127 DNA / pantothenate metabolism flavoprotein CDA09_03445 PF02441 Flavoprotein CDA09_03450 PF00692 dUTPase CDA09_03455 PF09297 NADH pyrophosphatase zinc ribbon domain CDA09_03455 PF00293 NUDIX domain CDA09_03455 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CDA09_03460 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_03460 PF10518 TAT (twin-arginine translocation) pathway signal sequence CDA09_03460 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CDA09_03480 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CDA09_03485 PF03971 Monomeric isocitrate dehydrogenase CDA09_03490 PF00180 Isocitrate/isopropylmalate dehydrogenase CDA09_03500 PF03764 Elongation factor G, domain IV CDA09_03500 PF00679 Elongation factor G C-terminus CDA09_03500 PF00009 Elongation factor Tu GTP binding domain CDA09_03500 PF14492 Elongation Factor G, domain II CDA09_03500 PF03144 Elongation factor Tu domain 2 CDA09_03510 PF04172 LrgB-like family CDA09_03520 PF07715 TonB-dependent Receptor Plug Domain CDA09_03520 PF00593 TonB dependent receptor CDA09_03535 PF01274 Malate synthase CDA09_03545 PF13419 Haloacid dehalogenase-like hydrolase CDA09_03550 PF03466 LysR substrate binding domain CDA09_03550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_03565 PF14403 Circularly permuted ATP-grasp type 2 CDA09_03570 PF14403 Circularly permuted ATP-grasp type 2 CDA09_03570 PF04168 A predicted alpha-helical domain with a conserved ER motif. CDA09_03585 PF04168 A predicted alpha-helical domain with a conserved ER motif. CDA09_03585 PF14403 Circularly permuted ATP-grasp type 2 CDA09_03590 PF01841 Transglutaminase-like superfamily CDA09_03590 PF08379 Bacterial transglutaminase-like N-terminal region CDA09_03605 PF04717 Type VI secretion system, phage-baseplate injector CDA09_03605 PF16671 Actin cross-linking domain CDA09_03660 PF07724 AAA domain (Cdc48 subfamily) CDA09_03660 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_03660 PF10431 C-terminal, D2-small domain, of ClpB protein CDA09_03660 PF17871 AAA lid domain CDA09_03670 PF03979 Sigma-70 factor, region 1.1 CDA09_03670 PF00140 Sigma-70 factor, region 1.2 CDA09_03670 PF04542 Sigma-70 region 2 CDA09_03670 PF04539 Sigma-70 region 3 CDA09_03670 PF04545 Sigma-70, region 4 CDA09_03670 PF04546 Sigma-70, non-essential region CDA09_03675 PF08278 DNA primase DnaG DnaB-binding CDA09_03675 PF08275 DNA primase catalytic core, N-terminal domain CDA09_03675 PF10410 DnaB-helicase binding domain of primase CDA09_03675 PF01807 CHC2 zinc finger CDA09_03685 PF01165 Ribosomal protein S21 CDA09_03690 PF00814 Glycoprotease family CDA09_03695 PF02660 Glycerol-3-phosphate acyltransferase CDA09_03710 PF04073 Aminoacyl-tRNA editing domain CDA09_03715 PF00589 Phage integrase family CDA09_03715 PF02899 Phage integrase, N-terminal SAM-like domain CDA09_03720 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDA09_03720 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDA09_03725 PF00171 Aldehyde dehydrogenase family CDA09_03730 PF06144 DNA polymerase III, delta subunit CDA09_03730 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CDA09_03735 PF04390 Lipopolysaccharide-assembly CDA09_03740 PF13603 Leucyl-tRNA synthetase, Domain 2 CDA09_03740 PF00133 tRNA synthetases class I (I, L, M and V) CDA09_03740 PF08264 Anticodon-binding domain of tRNA CDA09_03740 PF09334 tRNA synthetases class I (M) CDA09_03750 PF13361 UvrD-like helicase C-terminal domain CDA09_03750 PF00580 UvrD/REP helicase N-terminal domain CDA09_03755 PF13614 AAA domain CDA09_03760 PF01515 Phosphate acetyl/butaryl transferase CDA09_03760 PF00390 Malic enzyme, N-terminal domain CDA09_03760 PF03949 Malic enzyme, NAD binding domain CDA09_03770 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_03770 PF00107 Zinc-binding dehydrogenase CDA09_03780 PF01336 OB-fold nucleic acid binding domain CDA09_03780 PF02811 PHP domain CDA09_03780 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDA09_03780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDA09_03780 PF14579 Helix-hairpin-helix motif CDA09_03785 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDA09_03785 PF00578 AhpC/TSA family CDA09_03790 PF00708 Acylphosphatase CDA09_03795 PF00916 Sulfate permease family CDA09_03795 PF01740 STAS domain CDA09_03800 PF09334 tRNA synthetases class I (M) CDA09_03800 PF01588 Putative tRNA binding domain CDA09_03805 PF05736 OprF membrane domain CDA09_03805 PF00691 OmpA family CDA09_03810 PF10609 NUBPL iron-transfer P-loop NTPase CDA09_03815 PF00692 dUTPase CDA09_03820 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CDA09_03820 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CDA09_03820 PF01276 Orn/Lys/Arg decarboxylase, major domain CDA09_03825 PF00186 Dihydrofolate reductase CDA09_03830 PF00303 Thymidylate synthase CDA09_03865 PF01494 FAD binding domain CDA09_03870 PF10411 Disulfide bond isomerase protein N-terminus CDA09_03870 PF13098 Thioredoxin-like domain CDA09_03875 PF03562 MltA specific insert domain CDA09_03875 PF06725 3D domain CDA09_03885 PF00293 NUDIX domain CDA09_03890 PF03884 DNA gyrase inhibitor YacG CDA09_03895 PF07072 Cell division protein CDA09_03900 PF01121 Dephospho-CoA kinase CDA09_03910 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_03915 PF03309 Type III pantothenate kinase CDA09_03920 PF08279 HTH domain CDA09_03920 PF03099 Biotin/lipoate A/B protein ligase family CDA09_03920 PF02237 Biotin protein ligase C terminal domain CDA09_03925 PF00072 Response regulator receiver domain CDA09_03925 PF02954 Bacterial regulatory protein, Fis family CDA09_03925 PF00158 Sigma-54 interaction domain CDA09_03930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_03930 PF00512 His Kinase A (phospho-acceptor) domain CDA09_03930 PF00989 PAS fold CDA09_03945 PF01545 Cation efflux family CDA09_03945 PF16916 Dimerisation domain of Zinc Transporter CDA09_03950 PF00581 Rhodanese-like domain CDA09_03955 PF02445 Quinolinate synthetase A protein CDA09_03960 PF03372 Endonuclease/Exonuclease/phosphatase family CDA09_03965 PF13091 PLD-like domain CDA09_03975 PF00106 short chain dehydrogenase CDA09_03980 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDA09_03990 PF00535 Glycosyl transferase family 2 CDA09_04005 PF00849 RNA pseudouridylate synthase CDA09_04010 PF06071 Protein of unknown function (DUF933) CDA09_04010 PF01926 50S ribosome-binding GTPase CDA09_04015 PF01195 Peptidyl-tRNA hydrolase CDA09_04020 PF14693 Ribosomal protein TL5, C-terminal domain CDA09_04020 PF01386 Ribosomal L25p family CDA09_04025 PF14572 Phosphoribosyl synthetase-associated domain CDA09_04025 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDA09_04035 PF00288 GHMP kinases N terminal domain CDA09_04035 PF08544 GHMP kinases C terminal CDA09_04040 PF03550 Outer membrane lipoprotein LolB CDA09_04050 PF06827 Zinc finger found in FPG and IleRS CDA09_04050 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CDA09_04050 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CDA09_04055 PF00350 Dynamin family CDA09_04060 PF00037 4Fe-4S binding domain CDA09_04065 PF01467 Cytidylyltransferase-like CDA09_04080 PF00675 Insulinase (Peptidase family M16) CDA09_04080 PF05193 Peptidase M16 inactive domain CDA09_04085 PF02881 SRP54-type protein, helical bundle domain CDA09_04085 PF00448 SRP54-type protein, GTPase domain CDA09_04090 PF00005 ABC transporter CDA09_04095 PF18075 FtsX extracellular domain CDA09_04105 PF00072 Response regulator receiver domain CDA09_04105 PF13426 PAS domain CDA09_04105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_04115 PF03061 Thioesterase superfamily CDA09_04120 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDA09_04120 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDA09_04145 PF01938 TRAM domain CDA09_04145 PF04055 Radical SAM superfamily CDA09_04145 PF00919 Uncharacterized protein family UPF0004 CDA09_04150 PF02562 PhoH-like protein CDA09_04155 PF02130 Uncharacterized protein family UPF0054 CDA09_04160 PF00571 CBS domain CDA09_04160 PF03471 Transporter associated domain CDA09_04165 PF00795 Carbon-nitrogen hydrolase CDA09_04170 PF02091 Glycyl-tRNA synthetase alpha subunit CDA09_04175 PF02092 Glycyl-tRNA synthetase beta subunit CDA09_04175 PF05746 DALR anticodon binding domain CDA09_04185 PF01553 Acyltransferase CDA09_04195 PF00437 Type II/IV secretion system protein CDA09_04205 PF00378 Enoyl-CoA hydratase/isomerase CDA09_04220 PF01380 SIS domain CDA09_04220 PF00571 CBS domain CDA09_04225 PF00999 Sodium/hydrogen exchanger family CDA09_04225 PF02080 TrkA-C domain CDA09_04225 PF02254 TrkA-N domain CDA09_04230 PF00005 ABC transporter CDA09_04235 PF02405 Permease MlaE CDA09_04240 PF02470 MlaD protein CDA09_04245 PF04333 MlaA lipoprotein CDA09_04260 PF00005 ABC transporter CDA09_04265 PF01061 ABC-2 type transporter CDA09_04275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDA09_04280 PF14760 Rnk N-terminus CDA09_04280 PF01272 Transcription elongation factor, GreA/GreB, C-term CDA09_04285 PF01634 ATP phosphoribosyltransferase CDA09_04290 PF00815 Histidinol dehydrogenase CDA09_04295 PF00155 Aminotransferase class I and II CDA09_04300 PF00475 Imidazoleglycerol-phosphate dehydratase CDA09_04305 PF00117 Glutamine amidotransferase class-I CDA09_04310 PF00977 Histidine biosynthesis protein CDA09_04315 PF00977 Histidine biosynthesis protein CDA09_04320 PF01502 Phosphoribosyl-AMP cyclohydrolase CDA09_04325 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CDA09_04335 PF02416 mttA/Hcf106 family CDA09_04340 PF02416 mttA/Hcf106 family CDA09_04345 PF00902 Sec-independent protein translocase protein (TatC) CDA09_04350 PF17820 PDZ domain CDA09_04350 PF13180 PDZ domain CDA09_04355 PF01784 NIF3 (NGG1p interacting factor 3) CDA09_04370 PF08442 ATP-grasp domain CDA09_04370 PF00549 CoA-ligase CDA09_04375 PF00549 CoA-ligase CDA09_04375 PF02629 CoA binding domain CDA09_04380 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDA09_04380 PF00512 His Kinase A (phospho-acceptor) domain CDA09_04380 PF00072 Response regulator receiver domain CDA09_04380 PF01627 Hpt domain CDA09_04380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_04380 PF00672 HAMP domain CDA09_04385 PF08534 Redoxin CDA09_04395 PF01384 Phosphate transporter family CDA09_04400 PF00334 Nucleoside diphosphate kinase CDA09_04405 PF04055 Radical SAM superfamily CDA09_04415 PF13464 Domain of unknown function (DUF4115) CDA09_04420 PF04551 GcpE protein CDA09_04425 PF03129 Anticodon binding domain CDA09_04425 PF13393 Histidyl-tRNA synthetase CDA09_04430 PF09976 Tetratricopeptide repeat-like domain CDA09_04435 PF13360 PQQ-like domain CDA09_04440 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CDA09_04440 PF01926 50S ribosome-binding GTPase CDA09_04445 PF17209 Hfq protein CDA09_04450 PF16360 GTP-binding GTPase Middle Region CDA09_04450 PF13167 GTP-binding GTPase N-terminal CDA09_04450 PF01926 50S ribosome-binding GTPase CDA09_04455 PF12221 Bacterial membrane protein N terminal CDA09_04455 PF01145 SPFH domain / Band 7 family CDA09_04460 PF01145 SPFH domain / Band 7 family CDA09_04470 PF13393 Histidyl-tRNA synthetase CDA09_04475 PF00709 Adenylosuccinate synthetase CDA09_04490 PF08461 Ribonuclease R winged-helix domain CDA09_04490 PF08206 Ribonuclease B OB domain CDA09_04490 PF00773 RNB domain CDA09_04490 PF00575 S1 RNA binding domain CDA09_04490 PF17876 Cold shock domain CDA09_04495 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDA09_04495 PF00588 SpoU rRNA Methylase family CDA09_04500 PF08376 Nitrate and nitrite sensing CDA09_04500 PF03861 ANTAR domain CDA09_04510 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CDA09_04515 PF04055 Radical SAM superfamily CDA09_04515 PF13186 Iron-sulfur cluster-binding domain CDA09_04525 PF00266 Aminotransferase class-V CDA09_04530 PF01180 Dihydroorotate dehydrogenase CDA09_04540 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_04545 PF00005 ABC transporter CDA09_04550 PF05175 Methyltransferase small domain CDA09_04555 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDA09_04555 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDA09_04555 PF04324 BFD-like [2Fe-2S] binding domain CDA09_04555 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_04555 PF18267 Rubredoxin NAD+ reductase C-terminal domain CDA09_04560 PF00355 Rieske [2Fe-2S] domain CDA09_04565 PF07690 Major Facilitator Superfamily CDA09_04570 PF00069 Protein kinase domain CDA09_04575 PF01568 Molydopterin dinucleotide binding domain CDA09_04575 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_04575 PF04324 BFD-like [2Fe-2S] binding domain CDA09_04575 PF00384 Molybdopterin oxidoreductase CDA09_04580 PF08448 PAS fold CDA09_04580 PF08447 PAS fold CDA09_04580 PF00563 EAL domain CDA09_04580 PF00990 Diguanylate cyclase, GGDEF domain CDA09_04585 PF13193 AMP-binding enzyme C-terminal domain CDA09_04585 PF00501 AMP-binding enzyme CDA09_04600 PF01734 Patatin-like phospholipase CDA09_04610 PF12169 DNA polymerase III subunits gamma and tau domain III CDA09_04610 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CDA09_04610 PF12170 DNA polymerase III tau subunit V interacting with alpha CDA09_04615 PF02575 YbaB/EbfC DNA-binding family CDA09_04620 PF02132 RecR protein CDA09_04620 PF13662 Toprim domain CDA09_04625 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CDA09_04625 PF00355 Rieske [2Fe-2S] domain CDA09_04630 PF00032 Cytochrome b(C-terminal)/b6/petD CDA09_04630 PF00033 Cytochrome b/b6/petB CDA09_04635 PF02167 Cytochrome C1 family CDA09_04640 PF00043 Glutathione S-transferase, C-terminal domain CDA09_04640 PF02798 Glutathione S-transferase, N-terminal domain CDA09_04645 PF04386 Stringent starvation protein B CDA09_04650 PF13439 Glycosyltransferase Family 4 CDA09_04650 PF00534 Glycosyl transferases group 1 CDA09_04655 PF01266 FAD dependent oxidoreductase CDA09_04660 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CDA09_04665 PF01037 Lrp/AsnC ligand binding domain CDA09_04670 PF00171 Aldehyde dehydrogenase family CDA09_04670 PF14850 DNA-binding domain of Proline dehydrogenase CDA09_04670 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CDA09_04670 PF01619 Proline dehydrogenase CDA09_04685 PF00563 EAL domain CDA09_04685 PF00990 Diguanylate cyclase, GGDEF domain CDA09_04685 PF03707 Bacterial signalling protein N terminal repeat CDA09_04690 PF01966 HD domain CDA09_04690 PF11871 Domain of unknown function (DUF3391) CDA09_04695 PF03707 Bacterial signalling protein N terminal repeat CDA09_04695 PF00990 Diguanylate cyclase, GGDEF domain CDA09_04695 PF00563 EAL domain CDA09_04700 PF00155 Aminotransferase class I and II CDA09_04705 PF03480 Bacterial extracellular solute-binding protein, family 7 CDA09_04710 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDA09_04740 PF00392 Bacterial regulatory proteins, gntR family CDA09_04740 PF07729 FCD domain CDA09_04745 PF00205 Thiamine pyrophosphate enzyme, central domain CDA09_04745 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDA09_04745 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_04750 PF13193 AMP-binding enzyme C-terminal domain CDA09_04750 PF00501 AMP-binding enzyme CDA09_04755 PF03547 Membrane transport protein CDA09_04760 PF00355 Rieske [2Fe-2S] domain CDA09_04765 PF13360 PQQ-like domain CDA09_04765 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_04770 PF00171 Aldehyde dehydrogenase family CDA09_04780 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_04780 PF00107 Zinc-binding dehydrogenase CDA09_04785 PF00072 Response regulator receiver domain CDA09_04785 PF00196 Bacterial regulatory proteins, luxR family CDA09_04800 PF00166 Chaperonin 10 Kd subunit CDA09_04805 PF00118 TCP-1/cpn60 chaperonin family CDA09_04810 PF00486 Transcriptional regulatory protein, C terminal CDA09_04810 PF00072 Response regulator receiver domain CDA09_04815 PF00512 His Kinase A (phospho-acceptor) domain CDA09_04815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_04815 PF08521 Two-component sensor kinase N-terminal CDA09_04820 PF04341 Protein of unknown function, DUF485 CDA09_04825 PF00474 Sodium:solute symporter family CDA09_04850 PF05840 Bacteriophage replication gene A protein (GPA) CDA09_04895 PF01695 IstB-like ATP binding protein CDA09_04900 PF00665 Integrase core domain CDA09_04905 PF02371 Transposase IS116/IS110/IS902 family CDA09_04905 PF01548 Transposase CDA09_04915 PF00009 Elongation factor Tu GTP binding domain CDA09_04920 PF01507 Phosphoadenosine phosphosulfate reductase family CDA09_04925 PF01925 Sulfite exporter TauE/SafE CDA09_04930 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CDA09_04930 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CDA09_04930 PF01488 Shikimate / quinate 5-dehydrogenase CDA09_04935 PF00472 RF-1 domain CDA09_04935 PF03462 PCRF domain CDA09_04940 PF17827 PrmC N-terminal domain CDA09_04940 PF05175 Methyltransferase small domain CDA09_04945 PF00462 Glutaredoxin CDA09_04950 PF03793 PASTA domain CDA09_04950 PF00069 Protein kinase domain CDA09_04955 PF00206 Lyase CDA09_04955 PF14698 Argininosuccinate lyase C-terminal CDA09_04960 PF04397 LytTr DNA-binding domain CDA09_04960 PF00072 Response regulator receiver domain CDA09_04965 PF00311 Phosphoenolpyruvate carboxylase CDA09_04970 PF03900 Porphobilinogen deaminase, C-terminal domain CDA09_04970 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CDA09_04975 PF02602 Uroporphyrinogen-III synthase HemD CDA09_04980 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CDA09_04990 PF01218 Coproporphyrinogen III oxidase CDA09_04995 PF02843 Phosphoribosylglycinamide synthetase, C domain CDA09_04995 PF02844 Phosphoribosylglycinamide synthetase, N domain CDA09_04995 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CDA09_05000 PF01808 AICARFT/IMPCHase bienzyme CDA09_05000 PF02142 MGS-like domain CDA09_05005 PF02954 Bacterial regulatory protein, Fis family CDA09_05010 PF01207 Dihydrouridine synthase (Dus) CDA09_05015 PF01494 FAD binding domain CDA09_05020 PF00557 Metallopeptidase family M24 CDA09_05020 PF05195 Aminopeptidase P, N-terminal domain CDA09_05025 PF00483 Nucleotidyl transferase CDA09_05030 PF01636 Phosphotransferase enzyme family CDA09_05035 PF03968 OstA-like protein CDA09_05035 PF04453 LPS transport system D CDA09_05040 PF09312 SurA N-terminal domain CDA09_05040 PF00639 PPIC-type PPIASE domain CDA09_05045 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CDA09_05050 PF00398 Ribosomal RNA adenine dimethylase CDA09_05060 PF00027 Cyclic nucleotide-binding domain CDA09_05060 PF13545 Crp-like helix-turn-helix domain CDA09_05080 PF00483 Nucleotidyl transferase CDA09_05090 PF01432 Peptidase family M3 CDA09_05100 PF01259 SAICAR synthetase CDA09_05110 PF00691 OmpA family CDA09_05110 PF13488 Glycine zipper CDA09_05115 PF08448 PAS fold CDA09_05115 PF00990 Diguanylate cyclase, GGDEF domain CDA09_05115 PF00563 EAL domain CDA09_05125 PF00990 Diguanylate cyclase, GGDEF domain CDA09_05125 PF00072 Response regulator receiver domain CDA09_05130 PF01116 Fructose-bisphosphate aldolase class-II CDA09_05135 PF00881 Nitroreductase family CDA09_05140 PF00224 Pyruvate kinase, barrel domain CDA09_05140 PF02887 Pyruvate kinase, alpha/beta domain CDA09_05155 PF00162 Phosphoglycerate kinase CDA09_05160 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDA09_05160 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDA09_05165 PF02779 Transketolase, pyrimidine binding domain CDA09_05165 PF02780 Transketolase, C-terminal domain CDA09_05165 PF00456 Transketolase, thiamine diphosphate binding domain CDA09_05170 PF00485 Phosphoribulokinase / Uridine kinase family CDA09_05175 PF00459 Inositol monophosphatase family CDA09_05180 PF04452 RNA methyltransferase CDA09_05185 PF03976 Polyphosphate kinase 2 (PPK2) CDA09_05190 PF00696 Amino acid kinase family CDA09_05190 PF00583 Acetyltransferase (GNAT) family CDA09_05195 PF03707 Bacterial signalling protein N terminal repeat CDA09_05195 PF13188 PAS domain CDA09_05195 PF00990 Diguanylate cyclase, GGDEF domain CDA09_05195 PF00563 EAL domain CDA09_05200 PF04362 Bacterial Fe(2+) trafficking CDA09_05205 PF01895 PhoU domain CDA09_05210 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CDA09_05215 PF00994 Probable molybdopterin binding domain CDA09_05215 PF03454 MoeA C-terminal region (domain IV) CDA09_05215 PF03453 MoeA N-terminal region (domain I and II) CDA09_05220 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_05225 PF01926 50S ribosome-binding GTPase CDA09_05230 PF00490 Delta-aminolevulinic acid dehydratase CDA09_05240 PF08241 Methyltransferase domain CDA09_05245 PF06968 Biotin and Thiamin Synthesis associated domain CDA09_05245 PF04055 Radical SAM superfamily CDA09_05250 PF00156 Phosphoribosyl transferase domain CDA09_05255 PF00588 SpoU rRNA Methylase family CDA09_05260 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CDA09_05260 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CDA09_05270 PF02556 Preprotein translocase subunit SecB CDA09_05275 PF00462 Glutaredoxin CDA09_05280 PF00581 Rhodanese-like domain CDA09_05290 PF00300 Histidine phosphatase superfamily (branch 1) CDA09_05295 PF01551 Peptidase family M23 CDA09_05300 PF13180 PDZ domain CDA09_05300 PF03572 Peptidase family S41 CDA09_05305 PF00899 ThiF family CDA09_05310 PF01872 RibD C-terminal domain CDA09_05310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDA09_05315 PF03477 ATP cone domain CDA09_05320 PF00464 Serine hydroxymethyltransferase CDA09_05325 PF00300 Histidine phosphatase superfamily (branch 1) CDA09_05330 PF01523 Putative modulator of DNA gyrase CDA09_05335 PF04751 Protein of unknown function (DUF615) CDA09_05340 PF00994 Probable molybdopterin binding domain CDA09_05345 PF01794 Ferric reductase like transmembrane component CDA09_05350 PF00174 Oxidoreductase molybdopterin binding domain CDA09_05360 PF08281 Sigma-70, region 4 CDA09_05360 PF04542 Sigma-70 region 2 CDA09_05365 PF00793 DAHP synthetase I family CDA09_05370 PF01923 Cobalamin adenosyltransferase CDA09_05375 PF02272 DHHA1 domain CDA09_05375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDA09_05375 PF01411 tRNA synthetases class II (A) CDA09_05385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDA09_05385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDA09_05385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDA09_05385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDA09_05400 PF01063 Amino-transferase class IV CDA09_05410 PF00293 NUDIX domain CDA09_05440 PF03710 Glutamate-ammonia ligase adenylyltransferase CDA09_05440 PF08335 GlnD PII-uridylyltransferase CDA09_05450 PF00795 Carbon-nitrogen hydrolase CDA09_05455 PF01523 Putative modulator of DNA gyrase CDA09_05465 PF00072 Response regulator receiver domain CDA09_05465 PF00158 Sigma-54 interaction domain CDA09_05475 PF00512 His Kinase A (phospho-acceptor) domain CDA09_05475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_05490 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CDA09_05490 PF01464 Transglycosylase SLT domain CDA09_05495 PF03129 Anticodon binding domain CDA09_05495 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDA09_05495 PF04073 Aminoacyl-tRNA editing domain CDA09_05500 PF00293 NUDIX domain CDA09_05510 PF02915 Rubrerythrin CDA09_05515 PF02754 Cysteine-rich domain CDA09_05515 PF13183 4Fe-4S dicluster domain CDA09_05530 PF03232 Ubiquinone biosynthesis protein COQ7 CDA09_05535 PF02566 OsmC-like protein CDA09_05540 PF01212 Beta-eliminating lyase CDA09_05545 PF00572 Ribosomal protein L13 CDA09_05550 PF00380 Ribosomal protein S9/S16 CDA09_05555 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDA09_05555 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDA09_05560 PF01521 Iron-sulphur cluster biosynthesis CDA09_05565 PF13542 Helix-turn-helix domain of transposase family ISL3 CDA09_05565 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CDA09_05565 PF01610 Transposase CDA09_05570 PF01551 Peptidase family M23 CDA09_05575 PF01479 S4 domain CDA09_05575 PF00579 tRNA synthetases class I (W and Y) CDA09_05580 PF03707 Bacterial signalling protein N terminal repeat CDA09_05580 PF00990 Diguanylate cyclase, GGDEF domain CDA09_05580 PF00563 EAL domain CDA09_05625 PF02423 Ornithine cyclodeaminase/mu-crystallin family CDA09_05630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_05630 PF03466 LysR substrate binding domain CDA09_05645 PF12833 Helix-turn-helix domain CDA09_05645 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDA09_05650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_05650 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_05650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_05655 PF01039 Carboxyl transferase domain CDA09_05660 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDA09_05660 PF00364 Biotin-requiring enzyme CDA09_05660 PF00289 Biotin carboxylase, N-terminal domain CDA09_05660 PF02785 Biotin carboxylase C-terminal domain CDA09_05665 PF13193 AMP-binding enzyme C-terminal domain CDA09_05665 PF00501 AMP-binding enzyme CDA09_05675 PF13193 AMP-binding enzyme C-terminal domain CDA09_05675 PF00501 AMP-binding enzyme CDA09_05680 PF01979 Amidohydrolase family CDA09_05690 PF00072 Response regulator receiver domain CDA09_05690 PF00990 Diguanylate cyclase, GGDEF domain CDA09_05695 PF05247 Flagellar transcriptional activator (FlhD) CDA09_05700 PF05280 Flagellar transcriptional activator (FlhC) CDA09_05705 PF01618 MotA/TolQ/ExbB proton channel family CDA09_05710 PF13677 Membrane MotB of proton-channel complex MotA/MotB CDA09_05710 PF00691 OmpA family CDA09_05715 PF03705 CheR methyltransferase, all-alpha domain CDA09_05715 PF01739 CheR methyltransferase, SAM binding domain CDA09_05720 PF00072 Response regulator receiver domain CDA09_05720 PF01339 CheB methylesterase CDA09_05725 PF01584 CheW-like domain CDA09_05725 PF00072 Response regulator receiver domain CDA09_05730 PF01584 CheW-like domain CDA09_05730 PF00072 Response regulator receiver domain CDA09_05735 PF00072 Response regulator receiver domain CDA09_05740 PF04344 Chemotaxis phosphatase, CheZ CDA09_05745 PF02895 Signal transducing histidine kinase, homodimeric domain CDA09_05745 PF09078 CheY binding CDA09_05745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_05745 PF01627 Hpt domain CDA09_05745 PF01584 CheW-like domain CDA09_05750 PF00923 Transaldolase/Fructose-6-phosphate aldolase CDA09_05755 PF00849 RNA pseudouridylate synthase CDA09_05760 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_05765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_05765 PF03466 LysR substrate binding domain CDA09_05770 PF00005 ABC transporter CDA09_05770 PF12857 TOBE-like domain CDA09_05775 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_05780 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_05815 PF00884 Sulfatase CDA09_05835 PF00158 Sigma-54 interaction domain CDA09_05840 PF03459 TOBE domain CDA09_05850 PF00005 ABC transporter CDA09_05855 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_05860 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_05865 PF09084 NMT1/THI5 like CDA09_05875 PF00884 Sulfatase CDA09_05885 PF07690 Major Facilitator Superfamily CDA09_05890 PF13533 Biotin-lipoyl like CDA09_05895 PF13193 AMP-binding enzyme C-terminal domain CDA09_05895 PF00501 AMP-binding enzyme CDA09_05905 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_05910 PF00005 ABC transporter CDA09_05930 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDA09_05930 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDA09_05935 PF13742 OB-fold nucleic acid binding domain CDA09_05935 PF02601 Exonuclease VII, large subunit CDA09_05940 PF01618 MotA/TolQ/ExbB proton channel family CDA09_05945 PF02472 Biopolymer transport protein ExbD/TolR CDA09_05950 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CDA09_05955 PF03966 Trm112p-like protein CDA09_05960 PF02348 Cytidylyltransferase CDA09_05965 PF05191 Adenylate kinase, active site lid CDA09_05970 PF00365 Phosphofructokinase CDA09_05985 PF03023 Lipid II flippase MurJ CDA09_05990 PF01649 Ribosomal protein S20 CDA09_06000 PF00202 Aminotransferase class-III CDA09_06005 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDA09_06005 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDA09_06010 PF00764 Arginosuccinate synthase CDA09_06020 PF06865 Pyrimidine/purine nucleoside phosphorylase CDA09_06025 PF04461 Protein of unknown function (DUF520) CDA09_06030 PF02405 Permease MlaE CDA09_06035 PF00005 ABC transporter CDA09_06055 PF01245 Ribosomal protein L19 CDA09_06060 PF01746 tRNA (Guanine-1)-methyltransferase CDA09_06065 PF01782 RimM N-terminal domain CDA09_06065 PF05239 PRC-barrel domain CDA09_06070 PF00886 Ribosomal protein S16 CDA09_06080 PF03631 Virulence factor BrkB CDA09_06085 PF03358 NADPH-dependent FMN reductase CDA09_06095 PF08502 LeuA allosteric (dimerisation) domain CDA09_06095 PF00682 HMGL-like CDA09_06110 PF09086 Domain of unknown function (DUF1924) CDA09_06120 PF00486 Transcriptional regulatory protein, C terminal CDA09_06120 PF00072 Response regulator receiver domain CDA09_06125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_06125 PF08918 PhoQ Sensor CDA09_06130 PF01066 CDP-alcohol phosphatidyltransferase CDA09_06135 PF02666 Phosphatidylserine decarboxylase CDA09_06140 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CDA09_06140 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CDA09_06145 PF10369 Small subunit of acetolactate synthase CDA09_06150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDA09_06150 PF00205 Thiamine pyrophosphate enzyme, central domain CDA09_06150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_06175 PF01433 Peptidase family M1 domain CDA09_06175 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CDA09_06175 PF11940 Domain of unknown function (DUF3458) Ig-like fold CDA09_06185 PF02569 Pantoate-beta-alanine ligase CDA09_06190 PF02548 Ketopantoate hydroxymethyltransferase CDA09_06195 PF01712 Deoxynucleoside kinase CDA09_06205 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CDA09_06210 PF01743 Poly A polymerase head domain CDA09_06210 PF12626 Polymerase A arginine-rich C-terminus CDA09_06210 PF12627 Probable RNA and SrmB- binding site of polymerase A CDA09_06220 PF00308 Bacterial dnaA protein CDA09_06220 PF08299 Bacterial dnaA protein helix-turn-helix CDA09_06225 PF01594 AI-2E family transporter CDA09_06230 PF02769 AIR synthase related protein, C-terminal domain CDA09_06230 PF00586 AIR synthase related protein, N-terminal domain CDA09_06235 PF00529 HlyD membrane-fusion protein of T1SS CDA09_06235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_06240 PF00873 AcrB/AcrD/AcrF family CDA09_06265 PF04055 Radical SAM superfamily CDA09_06275 PF13180 PDZ domain CDA09_06280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_06280 PF08521 Two-component sensor kinase N-terminal CDA09_06280 PF00512 His Kinase A (phospho-acceptor) domain CDA09_06285 PF00072 Response regulator receiver domain CDA09_06285 PF00486 Transcriptional regulatory protein, C terminal CDA09_06305 PF00486 Transcriptional regulatory protein, C terminal CDA09_06305 PF00072 Response regulator receiver domain CDA09_06310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_06310 PF00512 His Kinase A (phospho-acceptor) domain CDA09_06310 PF00672 HAMP domain CDA09_06315 PF04286 Protein of unknown function (DUF445) CDA09_06340 PF00245 Alkaline phosphatase CDA09_06350 PF03358 NADPH-dependent FMN reductase CDA09_06355 PF00909 Ammonium Transporter Family CDA09_06360 PF00892 EamA-like transporter family CDA09_06365 PF07722 Peptidase C26 CDA09_06370 PF04107 Glutamate-cysteine ligase family 2(GCS2) CDA09_06380 PF04355 SmpA / OmlA family CDA09_06385 PF13439 Glycosyltransferase Family 4 CDA09_06385 PF00534 Glycosyl transferases group 1 CDA09_06400 PF00361 Proton-conducting membrane transporter CDA09_06405 PF00146 NADH dehydrogenase CDA09_06415 PF00361 Proton-conducting membrane transporter CDA09_06420 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CDA09_06425 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDA09_06430 PF07681 DoxX CDA09_06435 PF00224 Pyruvate kinase, barrel domain CDA09_06435 PF02887 Pyruvate kinase, alpha/beta domain CDA09_06440 PF03928 Haem-degrading CDA09_06445 PF05161 MOFRL family CDA09_06445 PF13660 Domain of unknown function (DUF4147) CDA09_06450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDA09_06450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDA09_06455 PF01261 Xylose isomerase-like TIM barrel CDA09_06460 PF00205 Thiamine pyrophosphate enzyme, central domain CDA09_06460 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_06460 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDA09_06485 PF17200 Single Cache domain 2 CDA09_06485 PF07730 Histidine kinase CDA09_06490 PF01339 CheB methylesterase CDA09_06490 PF00072 Response regulator receiver domain CDA09_06495 PF00196 Bacterial regulatory proteins, luxR family CDA09_06495 PF00072 Response regulator receiver domain CDA09_06500 PF01037 Lrp/AsnC ligand binding domain CDA09_06505 PF00682 HMGL-like CDA09_06505 PF08502 LeuA allosteric (dimerisation) domain CDA09_06510 PF00589 Phage integrase family CDA09_06510 PF13495 Phage integrase, N-terminal SAM-like domain CDA09_06515 PF13495 Phage integrase, N-terminal SAM-like domain CDA09_06515 PF00589 Phage integrase family CDA09_06520 PF14319 Transposase zinc-binding domain CDA09_06520 PF04986 Putative transposase CDA09_06530 PF03466 LysR substrate binding domain CDA09_06530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_06540 PF13401 AAA domain CDA09_06540 PF01471 Putative peptidoglycan binding domain CDA09_06570 PF00664 ABC transporter transmembrane region CDA09_06570 PF00005 ABC transporter CDA09_06575 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDA09_06580 PF17763 Glutaminase/Asparaginase C-terminal domain CDA09_06580 PF00710 Asparaginase, N-terminal CDA09_06585 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_06590 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_06595 PF00005 ABC transporter CDA09_06600 PF00072 Response regulator receiver domain CDA09_06600 PF02954 Bacterial regulatory protein, Fis family CDA09_06600 PF00158 Sigma-54 interaction domain CDA09_06605 PF00171 Aldehyde dehydrogenase family CDA09_06620 PF00563 EAL domain CDA09_06620 PF00990 Diguanylate cyclase, GGDEF domain CDA09_06620 PF03707 Bacterial signalling protein N terminal repeat CDA09_06710 PF00460 Flagella basal body rod protein CDA09_06715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDA09_06715 PF00460 Flagella basal body rod protein CDA09_06720 PF13860 FlgD Ig-like domain CDA09_06720 PF03963 Flagellar hook capping protein - N-terminal region CDA09_06720 PF13861 FlgD Tudor-like domain CDA09_06725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDA09_06725 PF00460 Flagella basal body rod protein CDA09_06725 PF07559 Flagellar basal body protein FlaE CDA09_06730 PF00460 Flagella basal body rod protein CDA09_06730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDA09_06735 PF00460 Flagella basal body rod protein CDA09_06735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDA09_06740 PF02107 Flagellar L-ring protein CDA09_06745 PF02119 Flagellar P-ring protein CDA09_06755 PF00460 Flagella basal body rod protein CDA09_06755 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDA09_06760 PF00669 Bacterial flagellin N-terminal helical region CDA09_06770 PF01311 Bacterial export proteins, family 1 CDA09_06775 PF01313 Bacterial export proteins, family 3 CDA09_06780 PF00813 FliP family CDA09_06785 PF04347 Flagellar biosynthesis protein, FliO CDA09_06790 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CDA09_06795 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CDA09_06795 PF02154 Flagellar motor switch protein FliM CDA09_06815 PF18269 T3SS EscN ATPase C-terminal domain CDA09_06815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDA09_06825 PF14841 FliG middle domain CDA09_06825 PF14842 FliG N-terminal domain CDA09_06825 PF01706 FliG C-terminal domain CDA09_06830 PF08345 Flagellar M-ring protein C-terminal CDA09_06830 PF01514 Secretory protein of YscJ/FliF family CDA09_06835 PF00512 His Kinase A (phospho-acceptor) domain CDA09_06835 PF00989 PAS fold CDA09_06835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_06840 PF00158 Sigma-54 interaction domain CDA09_06840 PF00072 Response regulator receiver domain CDA09_06840 PF02954 Bacterial regulatory protein, Fis family CDA09_06845 PF02049 Flagellar hook-basal body complex protein FliE CDA09_06850 PF00512 His Kinase A (phospho-acceptor) domain CDA09_06850 PF00072 Response regulator receiver domain CDA09_06850 PF01627 Hpt domain CDA09_06850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_06855 PF07317 Flagellar regulator YcgR CDA09_06855 PF07238 PilZ domain CDA09_06860 PF01312 FlhB HrpN YscU SpaS Family CDA09_06875 PF02561 Flagellar protein FliS CDA09_06880 PF02465 Flagellar hook-associated protein 2 N-terminus CDA09_06880 PF07195 Flagellar hook-associated protein 2 C-terminus CDA09_06885 PF03646 FlaG protein CDA09_06890 PF00669 Bacterial flagellin N-terminal helical region CDA09_06890 PF00700 Bacterial flagellin C-terminal helical region CDA09_06895 PF00072 Response regulator receiver domain CDA09_06895 PF00990 Diguanylate cyclase, GGDEF domain CDA09_06900 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_06900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDA09_06905 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDA09_06905 PF00364 Biotin-requiring enzyme CDA09_06905 PF02817 e3 binding domain CDA09_06910 PF00456 Transketolase, thiamine diphosphate binding domain CDA09_06910 PF17831 Pyruvate dehydrogenase E1 component middle domain CDA09_06920 PF00989 PAS fold CDA09_06920 PF00512 His Kinase A (phospho-acceptor) domain CDA09_06920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_06925 PF00072 Response regulator receiver domain CDA09_06925 PF00196 Bacterial regulatory proteins, luxR family CDA09_06945 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDA09_06945 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDA09_06950 PF00731 AIR carboxylase CDA09_06955 PF02222 ATP-grasp domain CDA09_06955 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CDA09_06960 PF03481 Putative GTP-binding controlling metal-binding CDA09_06960 PF01300 Telomere recombination CDA09_07025 PF01883 Iron-sulfur cluster assembly protein CDA09_07035 PF03350 Uncharacterized protein family, UPF0114 CDA09_07040 PF08335 GlnD PII-uridylyltransferase CDA09_07040 PF01966 HD domain CDA09_07045 PF00557 Metallopeptidase family M24 CDA09_07050 PF00318 Ribosomal protein S2 CDA09_07055 PF00889 Elongation factor TS CDA09_07060 PF00696 Amino acid kinase family CDA09_07065 PF01765 Ribosome recycling factor CDA09_07070 PF01255 Putative undecaprenyl diphosphate synthase CDA09_07080 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CDA09_07080 PF13288 DXP reductoisomerase C-terminal domain CDA09_07080 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CDA09_07085 PF17820 PDZ domain CDA09_07085 PF13180 PDZ domain CDA09_07085 PF02163 Peptidase family M50 CDA09_07090 PF01103 Surface antigen CDA09_07090 PF07244 Surface antigen variable number repeat CDA09_07100 PF14602 Hexapeptide repeat of succinyl-transferase CDA09_07100 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_07100 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CDA09_07105 PF07977 FabA-like domain CDA09_07110 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_07110 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CDA09_07115 PF02684 Lipid-A-disaccharide synthetase CDA09_07120 PF01351 Ribonuclease HII CDA09_07130 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDA09_07130 PF00588 SpoU rRNA Methylase family CDA09_07140 PF08241 Methyltransferase domain CDA09_07145 PF12697 Alpha/beta hydrolase family CDA09_07150 PF00155 Aminotransferase class I and II CDA09_07155 PF00202 Aminotransferase class-III CDA09_07160 PF03883 Peroxide stress protein YaaA CDA09_07165 PF18027 Cytosolic carboxypeptidase N-terminal domain CDA09_07165 PF00246 Zinc carboxypeptidase CDA09_07175 PF00793 DAHP synthetase I family CDA09_07180 PF18113 Rubredoxin binding C-terminal domain CDA09_07180 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_07185 PF00301 Rubredoxin CDA09_07210 PF05573 NosL CDA09_07215 PF12679 ABC-2 family transporter protein CDA09_07220 PF00005 ABC transporter CDA09_07235 PF04205 FMN-binding domain CDA09_07235 PF12801 4Fe-4S binding domain CDA09_07240 PF13473 Cupredoxin-like domain CDA09_07240 PF18793 Nitrous oxide reductase propeller repeat 2 CDA09_07240 PF18764 Nitrous oxide reductase propeller repeat CDA09_07250 PF00196 Bacterial regulatory proteins, luxR family CDA09_07250 PF00072 Response regulator receiver domain CDA09_07255 PF07730 Histidine kinase CDA09_07255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_07255 PF00672 HAMP domain CDA09_07255 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CDA09_07260 PF02665 Nitrate reductase gamma subunit CDA09_07265 PF02613 Nitrate reductase delta subunit CDA09_07270 PF13247 4Fe-4S dicluster domain CDA09_07270 PF14711 Respiratory nitrate reductase beta C-terminal CDA09_07275 PF14710 Respiratory nitrate reductase alpha N-terminal CDA09_07275 PF01568 Molydopterin dinucleotide binding domain CDA09_07275 PF00384 Molybdopterin oxidoreductase CDA09_07280 PF07690 Major Facilitator Superfamily CDA09_07285 PF07690 Major Facilitator Superfamily CDA09_07315 PF01329 Pterin 4 alpha carbinolamine dehydratase CDA09_07320 PF01053 Cys/Met metabolism PLP-dependent enzyme CDA09_07330 PF00425 chorismate binding enzyme CDA09_07330 PF04715 Anthranilate synthase component I, N terminal region CDA09_07335 PF08448 PAS fold CDA09_07335 PF00990 Diguanylate cyclase, GGDEF domain CDA09_07340 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDA09_07340 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDA09_07340 PF14579 Helix-hairpin-helix motif CDA09_07340 PF02811 PHP domain CDA09_07345 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CDA09_07355 PF01554 MatE CDA09_07385 PF02954 Bacterial regulatory protein, Fis family CDA09_07385 PF02830 V4R domain CDA09_07385 PF00158 Sigma-54 interaction domain CDA09_07385 PF06505 Activator of aromatic catabolism CDA09_07390 PF13426 PAS domain CDA09_07390 PF13188 PAS domain CDA09_07390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_07395 PF00196 Bacterial regulatory proteins, luxR family CDA09_07395 PF00072 Response regulator receiver domain CDA09_07400 PF14870 Photosynthesis system II assembly factor YCF48 CDA09_07425 PF02801 Beta-ketoacyl synthase, C-terminal domain CDA09_07425 PF14765 Polyketide synthase dehydratase CDA09_07425 PF00107 Zinc-binding dehydrogenase CDA09_07425 PF00550 Phosphopantetheine attachment site CDA09_07425 PF08659 KR domain CDA09_07425 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_07425 PF00109 Beta-ketoacyl synthase, N-terminal domain CDA09_07425 PF00698 Acyl transferase domain CDA09_07425 PF16197 Ketoacyl-synthetase C-terminal extension CDA09_07430 PF00106 short chain dehydrogenase CDA09_07440 PF02515 CoA-transferase family III CDA09_07445 PF02515 CoA-transferase family III CDA09_07455 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_07455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_07455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_07460 PF00378 Enoyl-CoA hydratase/isomerase CDA09_07465 PF01161 Phosphatidylethanolamine-binding protein CDA09_07475 PF11339 Protein of unknown function (DUF3141) CDA09_07485 PF07969 Amidohydrolase family CDA09_07525 PF07728 AAA domain (dynein-related subfamily) CDA09_07525 PF08406 CbbQ/NirQ/NorQ C-terminal CDA09_07530 PF18512 Benzylsuccinate synthase beta subunit CDA09_07535 PF02901 Pyruvate formate lyase-like CDA09_07535 PF01228 Glycine radical CDA09_07540 PF08201 BssC/TutF protein CDA09_07545 PF04055 Radical SAM superfamily CDA09_07550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_07550 PF13188 PAS domain CDA09_07550 PF13426 PAS domain CDA09_07565 PF09828 Chromate resistance exported protein CDA09_07580 PF09828 Chromate resistance exported protein CDA09_07595 PF00375 Sodium:dicarboxylate symporter family CDA09_07600 PF01925 Sulfite exporter TauE/SafE CDA09_07605 PF02743 Cache domain CDA09_07605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_07605 PF00512 His Kinase A (phospho-acceptor) domain CDA09_07660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_07660 PF00512 His Kinase A (phospho-acceptor) domain CDA09_07665 PF00072 Response regulator receiver domain CDA09_07670 PF13492 GAF domain CDA09_07670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_07670 PF07730 Histidine kinase CDA09_07675 PF00072 Response regulator receiver domain CDA09_07675 PF00196 Bacterial regulatory proteins, luxR family CDA09_07685 PF00501 AMP-binding enzyme CDA09_07695 PF00072 Response regulator receiver domain CDA09_07700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_07700 PF02743 Cache domain CDA09_07700 PF00512 His Kinase A (phospho-acceptor) domain CDA09_07705 PF00072 Response regulator receiver domain CDA09_07710 PF02954 Bacterial regulatory protein, Fis family CDA09_07710 PF00072 Response regulator receiver domain CDA09_07710 PF00158 Sigma-54 interaction domain CDA09_07715 PF00025 ADP-ribosylation factor family CDA09_07720 PF00512 His Kinase A (phospho-acceptor) domain CDA09_07720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_07720 PF02743 Cache domain CDA09_07725 PF00437 Type II/IV secretion system protein CDA09_07730 PF00072 Response regulator receiver domain CDA09_07730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_07730 PF00512 His Kinase A (phospho-acceptor) domain CDA09_07730 PF08448 PAS fold CDA09_07730 PF13188 PAS domain CDA09_07735 PF00990 Diguanylate cyclase, GGDEF domain CDA09_07735 PF03707 Bacterial signalling protein N terminal repeat CDA09_07735 PF00563 EAL domain CDA09_07740 PF00072 Response regulator receiver domain CDA09_07740 PF08448 PAS fold CDA09_07740 PF13426 PAS domain CDA09_07740 PF00512 His Kinase A (phospho-acceptor) domain CDA09_07740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_07745 PF00072 Response regulator receiver domain CDA09_07745 PF00196 Bacterial regulatory proteins, luxR family CDA09_07750 PF00011 Hsp20/alpha crystallin family CDA09_07755 PF00011 Hsp20/alpha crystallin family CDA09_07760 PF00563 EAL domain CDA09_07760 PF03707 Bacterial signalling protein N terminal repeat CDA09_07760 PF00990 Diguanylate cyclase, GGDEF domain CDA09_07770 PF00593 TonB dependent receptor CDA09_07770 PF07715 TonB-dependent Receptor Plug Domain CDA09_07785 PF00248 Aldo/keto reductase family CDA09_07790 PF00056 lactate/malate dehydrogenase, NAD binding domain CDA09_07790 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDA09_07800 PF00563 EAL domain CDA09_07800 PF00990 Diguanylate cyclase, GGDEF domain CDA09_07800 PF03707 Bacterial signalling protein N terminal repeat CDA09_07805 PF01844 HNH endonuclease CDA09_07810 PF00255 Glutathione peroxidase CDA09_07815 PF00043 Glutathione S-transferase, C-terminal domain CDA09_07815 PF02798 Glutathione S-transferase, N-terminal domain CDA09_07825 PF00196 Bacterial regulatory proteins, luxR family CDA09_07825 PF00072 Response regulator receiver domain CDA09_07830 PF05231 MASE1 CDA09_07830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_07830 PF07730 Histidine kinase CDA09_07865 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDA09_07870 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_07875 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_07880 PF00005 ABC transporter CDA09_07895 PF00512 His Kinase A (phospho-acceptor) domain CDA09_07895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_07895 PF00989 PAS fold CDA09_07905 PF02705 K+ potassium transporter CDA09_07920 PF02630 SCO1/SenC CDA09_07925 PF00491 Arginase family CDA09_07935 PF00158 Sigma-54 interaction domain CDA09_07935 PF02954 Bacterial regulatory protein, Fis family CDA09_07935 PF01590 GAF domain CDA09_07940 PF00171 Aldehyde dehydrogenase family CDA09_07960 PF00005 ABC transporter CDA09_07965 PF00005 ABC transporter CDA09_08005 PF01590 GAF domain CDA09_08005 PF02954 Bacterial regulatory protein, Fis family CDA09_08005 PF00158 Sigma-54 interaction domain CDA09_08015 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain CDA09_08015 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CDA09_08020 PF18267 Rubredoxin NAD+ reductase C-terminal domain CDA09_08020 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_08020 PF04324 BFD-like [2Fe-2S] binding domain CDA09_08020 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDA09_08035 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_08040 PF00005 ABC transporter CDA09_08045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_08045 PF03466 LysR substrate binding domain CDA09_08050 PF05368 NmrA-like family CDA09_08055 PF01292 Prokaryotic cytochrome b561 CDA09_08060 PF04264 YceI-like domain CDA09_08120 PF00589 Phage integrase family CDA09_08125 PF01967 MoaC family CDA09_08130 PF01435 Peptidase family M48 CDA09_08135 PF01206 Sulfurtransferase TusA CDA09_08140 PF00133 tRNA synthetases class I (I, L, M and V) CDA09_08140 PF08264 Anticodon-binding domain of tRNA CDA09_08140 PF10458 Valyl tRNA synthetase tRNA binding arm CDA09_08155 PF02789 Cytosol aminopeptidase family, N-terminal domain CDA09_08155 PF00883 Cytosol aminopeptidase family, catalytic domain CDA09_08160 PF03739 Lipopolysaccharide export system permease LptF/LptG CDA09_08170 PF00175 Oxidoreductase NAD-binding domain CDA09_08170 PF00970 Oxidoreductase FAD-binding domain CDA09_08180 PF02082 Transcriptional regulator CDA09_08190 PF07690 Major Facilitator Superfamily CDA09_08195 PF03466 LysR substrate binding domain CDA09_08195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_08200 PF00849 RNA pseudouridylate synthase CDA09_08205 PF04945 YHS domain CDA09_08225 PF11525 Copper resistance protein K CDA09_08245 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDA09_08255 PF13614 AAA domain CDA09_08260 PF01548 Transposase CDA09_08260 PF02371 Transposase IS116/IS110/IS902 family CDA09_08265 PF03976 Polyphosphate kinase 2 (PPK2) CDA09_08295 PF00155 Aminotransferase class I and II CDA09_08295 PF00392 Bacterial regulatory proteins, gntR family CDA09_08305 PF00682 HMGL-like CDA09_08310 PF03206 Nitrogen fixation protein NifW CDA09_08315 PF00037 4Fe-4S binding domain CDA09_08320 PF01012 Electron transfer flavoprotein domain CDA09_08325 PF01012 Electron transfer flavoprotein domain CDA09_08325 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_08330 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_08340 PF00158 Sigma-54 interaction domain CDA09_08340 PF01590 GAF domain CDA09_08340 PF02954 Bacterial regulatory protein, Fis family CDA09_08355 PF02579 Dinitrogenase iron-molybdenum cofactor CDA09_08355 PF04055 Radical SAM superfamily CDA09_08360 PF04319 NifZ domain CDA09_08365 PF06988 NifT/FixU protein CDA09_08370 PF03747 ADP-ribosylglycohydrolase CDA09_08375 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CDA09_08380 PF00148 Nitrogenase component 1 type Oxidoreductase CDA09_08385 PF11844 Domain of unknown function (DUF3364) CDA09_08385 PF00148 Nitrogenase component 1 type Oxidoreductase CDA09_08390 PF00148 Nitrogenase component 1 type Oxidoreductase CDA09_08390 PF04324 BFD-like [2Fe-2S] binding domain CDA09_08395 PF00148 Nitrogenase component 1 type Oxidoreductase CDA09_08400 PF02579 Dinitrogenase iron-molybdenum cofactor CDA09_08405 PF03270 Protein of unknown function, DUF269 CDA09_08410 PF05082 Rop-like CDA09_08415 PF12838 4Fe-4S dicluster domain CDA09_08420 PF04891 NifQ CDA09_08440 PF03466 LysR substrate binding domain CDA09_08440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_08445 PF03631 Virulence factor BrkB CDA09_08450 PF07728 AAA domain (dynein-related subfamily) CDA09_08450 PF17868 AAA lid domain CDA09_08450 PF12592 Protein of unknown function (DUF3763) CDA09_08455 PF05762 VWA domain containing CoxE-like protein CDA09_08465 PF03466 LysR substrate binding domain CDA09_08465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_08470 PF07883 Cupin domain CDA09_08475 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_08480 PF01494 FAD binding domain CDA09_08485 PF13417 Glutathione S-transferase, N-terminal domain CDA09_08490 PF13458 Periplasmic binding protein CDA09_08500 PF02653 Branched-chain amino acid transport system / permease component CDA09_08505 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_08505 PF00005 ABC transporter CDA09_08510 PF00005 ABC transporter CDA09_08535 PF12833 Helix-turn-helix domain CDA09_08535 PF01965 DJ-1/PfpI family CDA09_08545 PF02633 Creatinine amidohydrolase CDA09_08555 PF03502 Nucleoside-specific channel-forming protein, Tsx CDA09_08565 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_08575 PF00005 ABC transporter CDA09_08575 PF08402 TOBE domain CDA09_08580 PF01321 Creatinase/Prolidase N-terminal domain CDA09_08580 PF00557 Metallopeptidase family M24 CDA09_08590 PF03466 LysR substrate binding domain CDA09_08590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_08595 PF00857 Isochorismatase family CDA09_08600 PF01968 Hydantoinase/oxoprolinase CDA09_08600 PF05378 Hydantoinase/oxoprolinase N-terminal region CDA09_08605 PF02538 Hydantoinase B/oxoprolinase CDA09_08610 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CDA09_08620 PF00857 Isochorismatase family CDA09_08625 PF07690 Major Facilitator Superfamily CDA09_08630 PF03466 LysR substrate binding domain CDA09_08630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_08635 PF02801 Beta-ketoacyl synthase, C-terminal domain CDA09_08635 PF00109 Beta-ketoacyl synthase, N-terminal domain CDA09_08650 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CDA09_08650 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CDA09_08650 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CDA09_08655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_08660 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_08665 PF01177 Asp/Glu/Hydantoin racemase CDA09_08675 PF07690 Major Facilitator Superfamily CDA09_08690 PF01979 Amidohydrolase family CDA09_08695 PF01070 FMN-dependent dehydrogenase CDA09_08705 PF00271 Helicase conserved C-terminal domain CDA09_08705 PF03880 DbpA RNA binding domain CDA09_08705 PF00270 DEAD/DEAH box helicase CDA09_08710 PF01863 Protein of unknown function DUF45 CDA09_08715 PF00342 Phosphoglucose isomerase CDA09_08720 PF00561 alpha/beta hydrolase fold CDA09_08725 PF11525 Copper resistance protein K CDA09_08735 PF08042 PqqA family CDA09_08740 PF12706 Beta-lactamase superfamily domain CDA09_08745 PF03070 TENA/THI-4/PQQC family CDA09_08750 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CDA09_08755 PF13186 Iron-sulfur cluster-binding domain CDA09_08755 PF04055 Radical SAM superfamily CDA09_08765 PF13409 Glutathione S-transferase, N-terminal domain CDA09_08770 PF07681 DoxX CDA09_08775 PF02230 Phospholipase/Carboxylesterase CDA09_08785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_08785 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_08785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_08790 PF02803 Thiolase, C-terminal domain CDA09_08790 PF00108 Thiolase, N-terminal domain CDA09_08795 PF00501 AMP-binding enzyme CDA09_08795 PF13193 AMP-binding enzyme C-terminal domain CDA09_08805 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_08820 PF01494 FAD binding domain CDA09_08840 PF13193 AMP-binding enzyme C-terminal domain CDA09_08840 PF00501 AMP-binding enzyme CDA09_08845 PF02685 Glucokinase CDA09_08855 PF00072 Response regulator receiver domain CDA09_08860 PF00027 Cyclic nucleotide-binding domain CDA09_08860 PF13545 Crp-like helix-turn-helix domain CDA09_08880 PF07728 AAA domain (dynein-related subfamily) CDA09_08880 PF08406 CbbQ/NirQ/NorQ C-terminal CDA09_08890 PF00510 Cytochrome c oxidase subunit III CDA09_08895 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDA09_08900 PF00034 Cytochrome c CDA09_08930 PF16177 Acetyl-coenzyme A synthetase N-terminus CDA09_08930 PF00501 AMP-binding enzyme CDA09_08930 PF13193 AMP-binding enzyme C-terminal domain CDA09_08940 PF18698 Histidine kinase sensor domain CDA09_08940 PF00672 HAMP domain CDA09_08940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_08940 PF00989 PAS fold CDA09_08940 PF00512 His Kinase A (phospho-acceptor) domain CDA09_08945 PF00486 Transcriptional regulatory protein, C terminal CDA09_08945 PF00072 Response regulator receiver domain CDA09_08950 PF00929 Exonuclease CDA09_08955 PF00474 Sodium:solute symporter family CDA09_09000 PF13247 4Fe-4S dicluster domain CDA09_09005 PF01568 Molydopterin dinucleotide binding domain CDA09_09005 PF00384 Molybdopterin oxidoreductase CDA09_09025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_09025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_09025 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_09045 PF07690 Major Facilitator Superfamily CDA09_09070 PF02515 CoA-transferase family III CDA09_09090 PF07044 Protein of unknown function (DUF1329) CDA09_09115 PF00171 Aldehyde dehydrogenase family CDA09_09120 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_09120 PF00107 Zinc-binding dehydrogenase CDA09_09125 PF00582 Universal stress protein family CDA09_09135 PF00067 Cytochrome P450 CDA09_09140 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_09140 PF00175 Oxidoreductase NAD-binding domain CDA09_09145 PF01012 Electron transfer flavoprotein domain CDA09_09150 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_09150 PF01012 Electron transfer flavoprotein domain CDA09_09165 PF13193 AMP-binding enzyme C-terminal domain CDA09_09165 PF00501 AMP-binding enzyme CDA09_09170 PF02515 CoA-transferase family III CDA09_09180 PF00378 Enoyl-CoA hydratase/isomerase CDA09_09185 PF02515 CoA-transferase family III CDA09_09190 PF01144 Coenzyme A transferase CDA09_09195 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_09195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_09195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_09200 PF01144 Coenzyme A transferase CDA09_09205 PF13193 AMP-binding enzyme C-terminal domain CDA09_09205 PF00501 AMP-binding enzyme CDA09_09210 PF00392 Bacterial regulatory proteins, gntR family CDA09_09210 PF07729 FCD domain CDA09_09215 PF13193 AMP-binding enzyme C-terminal domain CDA09_09215 PF00501 AMP-binding enzyme CDA09_09220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_09220 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_09220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_09225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_09225 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_09225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_09230 PF00378 Enoyl-CoA hydratase/isomerase CDA09_09235 PF07729 FCD domain CDA09_09235 PF00392 Bacterial regulatory proteins, gntR family CDA09_09275 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_09275 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_09280 PF00106 short chain dehydrogenase CDA09_09290 PF00072 Response regulator receiver domain CDA09_09290 PF00196 Bacterial regulatory proteins, luxR family CDA09_09320 PF05717 IS66 Orf2 like protein CDA09_09325 PF13817 IS66 C-terminal element CDA09_09325 PF13005 zinc-finger binding domain of transposase IS66 CDA09_09325 PF03050 Transposase IS66 family CDA09_09325 PF13007 Transposase C of IS166 homeodomain CDA09_09360 PF01610 Transposase CDA09_09360 PF13542 Helix-turn-helix domain of transposase family ISL3 CDA09_09360 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CDA09_09370 PF00890 FAD binding domain CDA09_09375 PF13193 AMP-binding enzyme C-terminal domain CDA09_09375 PF00501 AMP-binding enzyme CDA09_09380 PF00378 Enoyl-CoA hydratase/isomerase CDA09_09395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_09395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_09410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_09410 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_09410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_09450 PF01996 F420-0:Gamma-glutamyl ligase CDA09_09450 PF00881 Nitroreductase family CDA09_09455 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_09455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_09460 PF12697 Alpha/beta hydrolase family CDA09_09465 PF01425 Amidase CDA09_09485 PF02803 Thiolase, C-terminal domain CDA09_09485 PF00108 Thiolase, N-terminal domain CDA09_09490 PF07044 Protein of unknown function (DUF1329) CDA09_09500 PF00501 AMP-binding enzyme CDA09_09500 PF13193 AMP-binding enzyme C-terminal domain CDA09_09505 PF02515 CoA-transferase family III CDA09_09510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_09510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_09510 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_09520 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_09520 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_09520 PF00378 Enoyl-CoA hydratase/isomerase CDA09_09525 PF00108 Thiolase, N-terminal domain CDA09_09525 PF02803 Thiolase, C-terminal domain CDA09_09530 PF00440 Bacterial regulatory proteins, tetR family CDA09_09535 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CDA09_09535 PF08463 EcoEI R protein C-terminal CDA09_09535 PF00271 Helicase conserved C-terminal domain CDA09_09535 PF04851 Type III restriction enzyme, res subunit CDA09_09550 PF01420 Type I restriction modification DNA specificity domain CDA09_09560 PF12161 HsdM N-terminal domain CDA09_09560 PF02384 N-6 DNA Methylase CDA09_09575 PF00106 short chain dehydrogenase CDA09_09580 PF13977 BetI-type transcriptional repressor, C-terminal CDA09_09580 PF00440 Bacterial regulatory proteins, tetR family CDA09_09585 PF13193 AMP-binding enzyme C-terminal domain CDA09_09585 PF00501 AMP-binding enzyme CDA09_09605 PF01575 MaoC like domain CDA09_09620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_09625 PF01144 Coenzyme A transferase CDA09_09635 PF00378 Enoyl-CoA hydratase/isomerase CDA09_09640 PF03060 Nitronate monooxygenase CDA09_09645 PF00378 Enoyl-CoA hydratase/isomerase CDA09_09650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_09650 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_09650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_09655 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_09655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_09655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_09660 PF00108 Thiolase, N-terminal domain CDA09_09660 PF02803 Thiolase, C-terminal domain CDA09_09665 PF00106 short chain dehydrogenase CDA09_09670 PF13193 AMP-binding enzyme C-terminal domain CDA09_09670 PF00501 AMP-binding enzyme CDA09_09675 PF00753 Metallo-beta-lactamase superfamily CDA09_09675 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDA09_09695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_09695 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CDA09_09705 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_09705 PF00970 Oxidoreductase FAD-binding domain CDA09_09705 PF00175 Oxidoreductase NAD-binding domain CDA09_09710 PF01012 Electron transfer flavoprotein domain CDA09_09715 PF01012 Electron transfer flavoprotein domain CDA09_09715 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_09735 PF00378 Enoyl-CoA hydratase/isomerase CDA09_09745 PF07044 Protein of unknown function (DUF1329) CDA09_09750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_09750 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_09755 PF00890 FAD binding domain CDA09_09755 PF14537 Cytochrome c3 CDA09_09770 PF05973 Phage derived protein Gp49-like (DUF891) CDA09_09775 PF01381 Helix-turn-helix CDA09_09780 PF07690 Major Facilitator Superfamily CDA09_09785 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_09805 PF12833 Helix-turn-helix domain CDA09_09805 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDA09_09810 PF02625 XdhC and CoxI family CDA09_09810 PF13478 XdhC Rossmann domain CDA09_09820 PF12848 ABC transporter CDA09_09820 PF00005 ABC transporter CDA09_09830 PF04055 Radical SAM superfamily CDA09_09850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_09850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_09850 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_09855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_09855 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_09855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_09860 PF00296 Luciferase-like monooxygenase CDA09_09865 PF00378 Enoyl-CoA hydratase/isomerase CDA09_09870 PF04480 Protein of unknown function (DUF559) CDA09_09880 PF02515 CoA-transferase family III CDA09_09885 PF00501 AMP-binding enzyme CDA09_09885 PF13193 AMP-binding enzyme C-terminal domain CDA09_09895 PF02515 CoA-transferase family III CDA09_09900 PF03060 Nitronate monooxygenase CDA09_09910 PF01012 Electron transfer flavoprotein domain CDA09_09925 PF13784 Fic/DOC family N-terminal CDA09_09925 PF02661 Fic/DOC family CDA09_09935 PF00171 Aldehyde dehydrogenase family CDA09_09940 PF04303 PrpF protein CDA09_09945 PF01613 Flavin reductase like domain CDA09_09955 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_09960 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CDA09_09960 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDA09_09965 PF00682 HMGL-like CDA09_09965 PF07836 DmpG-like communication domain CDA09_09970 PF07690 Major Facilitator Superfamily CDA09_09975 PF02515 CoA-transferase family III CDA09_09980 PF02515 CoA-transferase family III CDA09_09985 PF00378 Enoyl-CoA hydratase/isomerase CDA09_10000 PF00378 Enoyl-CoA hydratase/isomerase CDA09_10015 PF07690 Major Facilitator Superfamily CDA09_10025 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_10025 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_10030 PF02515 CoA-transferase family III CDA09_10035 PF02515 CoA-transferase family III CDA09_10040 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDA09_10040 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDA09_10045 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_10045 PF01799 [2Fe-2S] binding domain CDA09_10050 PF03450 CO dehydrogenase flavoprotein C-terminal domain CDA09_10050 PF00941 FAD binding domain in molybdopterin dehydrogenase CDA09_10060 PF00378 Enoyl-CoA hydratase/isomerase CDA09_10065 PF00296 Luciferase-like monooxygenase CDA09_10070 PF02515 CoA-transferase family III CDA09_10075 PF02515 CoA-transferase family III CDA09_10100 PF02515 CoA-transferase family III CDA09_10105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_10105 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_10105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_10110 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_10110 PF01012 Electron transfer flavoprotein domain CDA09_10120 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDA09_10120 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDA09_10125 PF02754 Cysteine-rich domain CDA09_10125 PF02665 Nitrate reductase gamma subunit CDA09_10125 PF13183 4Fe-4S dicluster domain CDA09_10145 PF00072 Response regulator receiver domain CDA09_10145 PF01627 Hpt domain CDA09_10145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_10145 PF01584 CheW-like domain CDA09_10155 PF00072 Response regulator receiver domain CDA09_10160 PF05227 CHASE3 domain CDA09_10160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_10160 PF00672 HAMP domain CDA09_10170 PF12849 PBP superfamily domain CDA09_10175 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_10180 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_10185 PF00005 ABC transporter CDA09_10190 PF03707 Bacterial signalling protein N terminal repeat CDA09_10190 PF00563 EAL domain CDA09_10190 PF00990 Diguanylate cyclase, GGDEF domain CDA09_10195 PF02332 Methane/Phenol/Toluene Hydroxylase CDA09_10200 PF06234 Toluene-4-monooxygenase system protein B (TmoB) CDA09_10205 PF00355 Rieske [2Fe-2S] domain CDA09_10210 PF02406 MmoB/DmpM family CDA09_10215 PF02332 Methane/Phenol/Toluene Hydroxylase CDA09_10220 PF00970 Oxidoreductase FAD-binding domain CDA09_10220 PF00175 Oxidoreductase NAD-binding domain CDA09_10220 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_10230 PF13426 PAS domain CDA09_10230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_10230 PF00512 His Kinase A (phospho-acceptor) domain CDA09_10230 PF08448 PAS fold CDA09_10230 PF00072 Response regulator receiver domain CDA09_10235 PF00072 Response regulator receiver domain CDA09_10235 PF00196 Bacterial regulatory proteins, luxR family CDA09_10240 PF02830 V4R domain CDA09_10240 PF00158 Sigma-54 interaction domain CDA09_10240 PF02954 Bacterial regulatory protein, Fis family CDA09_10240 PF06505 Activator of aromatic catabolism CDA09_10245 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_10250 PF06099 Phenol hydroxylase subunit CDA09_10255 PF02332 Methane/Phenol/Toluene Hydroxylase CDA09_10260 PF02406 MmoB/DmpM family CDA09_10265 PF02332 Methane/Phenol/Toluene Hydroxylase CDA09_10265 PF04945 YHS domain CDA09_10270 PF04663 Phenol hydroxylase conserved region CDA09_10275 PF00970 Oxidoreductase FAD-binding domain CDA09_10275 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_10275 PF00175 Oxidoreductase NAD-binding domain CDA09_10280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_10285 PF00884 Sulfatase CDA09_10310 PF03928 Haem-degrading CDA09_10315 PF00171 Aldehyde dehydrogenase family CDA09_10320 PF00561 alpha/beta hydrolase fold CDA09_10330 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CDA09_10330 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDA09_10335 PF07836 DmpG-like communication domain CDA09_10335 PF00682 HMGL-like CDA09_10345 PF01361 Tautomerase enzyme CDA09_10350 PF03466 LysR substrate binding domain CDA09_10350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_10360 PF02830 V4R domain CDA09_10360 PF00158 Sigma-54 interaction domain CDA09_10360 PF06505 Activator of aromatic catabolism CDA09_10360 PF02954 Bacterial regulatory protein, Fis family CDA09_10370 PF02954 Bacterial regulatory protein, Fis family CDA09_10370 PF00158 Sigma-54 interaction domain CDA09_10370 PF06505 Activator of aromatic catabolism CDA09_10370 PF02830 V4R domain CDA09_10390 PF02371 Transposase IS116/IS110/IS902 family CDA09_10390 PF01548 Transposase CDA09_10395 PF18381 YcaO cyclodehydratase C-terminal domain CDA09_10395 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CDA09_10400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_10405 PF06099 Phenol hydroxylase subunit CDA09_10410 PF02332 Methane/Phenol/Toluene Hydroxylase CDA09_10415 PF02406 MmoB/DmpM family CDA09_10420 PF04945 YHS domain CDA09_10420 PF02332 Methane/Phenol/Toluene Hydroxylase CDA09_10430 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_10430 PF00175 Oxidoreductase NAD-binding domain CDA09_10430 PF00970 Oxidoreductase FAD-binding domain CDA09_10435 PF00171 Aldehyde dehydrogenase family CDA09_10440 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_10455 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDA09_10455 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CDA09_10460 PF07836 DmpG-like communication domain CDA09_10460 PF00682 HMGL-like CDA09_10465 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_10470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_10470 PF05231 MASE1 CDA09_10470 PF07730 Histidine kinase CDA09_10475 PF00196 Bacterial regulatory proteins, luxR family CDA09_10475 PF00072 Response regulator receiver domain CDA09_10480 PF05138 Phenylacetic acid catabolic protein CDA09_10485 PF06243 Phenylacetic acid degradation B CDA09_10490 PF05138 Phenylacetic acid catabolic protein CDA09_10495 PF01883 Iron-sulfur cluster assembly protein CDA09_10500 PF00970 Oxidoreductase FAD-binding domain CDA09_10500 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_10500 PF00175 Oxidoreductase NAD-binding domain CDA09_10515 PF02803 Thiolase, C-terminal domain CDA09_10515 PF00108 Thiolase, N-terminal domain CDA09_10520 PF13478 XdhC Rossmann domain CDA09_10520 PF02625 XdhC and CoxI family CDA09_10525 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDA09_10530 PF01799 [2Fe-2S] binding domain CDA09_10530 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_10535 PF00248 Aldo/keto reductase family CDA09_10540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_10540 PF03466 LysR substrate binding domain CDA09_10545 PF00582 Universal stress protein family CDA09_10550 PF03466 LysR substrate binding domain CDA09_10550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_10570 PF01070 FMN-dependent dehydrogenase CDA09_10575 PF02653 Branched-chain amino acid transport system / permease component CDA09_10580 PF11862 Domain of unknown function (DUF3382) CDA09_10580 PF02653 Branched-chain amino acid transport system / permease component CDA09_10585 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_10585 PF00005 ABC transporter CDA09_10590 PF00005 ABC transporter CDA09_10600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDA09_10600 PF13378 Enolase C-terminal domain-like CDA09_10610 PF00535 Glycosyl transferase family 2 CDA09_10615 PF00462 Glutaredoxin CDA09_10625 PF04143 Sulphur transport CDA09_10640 PF02627 Carboxymuconolactone decarboxylase family CDA09_10665 PF08281 Sigma-70, region 4 CDA09_10665 PF04542 Sigma-70 region 2 CDA09_10690 PF02627 Carboxymuconolactone decarboxylase family CDA09_10710 PF00376 MerR family regulatory protein CDA09_10710 PF09278 MerR, DNA binding CDA09_10715 PF02411 MerT mercuric transport protein CDA09_10720 PF00403 Heavy-metal-associated domain CDA09_10725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDA09_10725 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_10725 PF00403 Heavy-metal-associated domain CDA09_10750 PF12833 Helix-turn-helix domain CDA09_10750 PF12852 Cupin CDA09_10770 PF13847 Methyltransferase domain CDA09_10780 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_10785 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_10790 PF00005 ABC transporter CDA09_10795 PF02801 Beta-ketoacyl synthase, C-terminal domain CDA09_10795 PF00109 Beta-ketoacyl synthase, N-terminal domain CDA09_10800 PF00550 Phosphopantetheine attachment site CDA09_10810 PF00202 Aminotransferase class-III CDA09_10825 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDA09_10845 PF00486 Transcriptional regulatory protein, C terminal CDA09_10845 PF00072 Response regulator receiver domain CDA09_10850 PF00512 His Kinase A (phospho-acceptor) domain CDA09_10850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_10855 PF00512 His Kinase A (phospho-acceptor) domain CDA09_10855 PF08448 PAS fold CDA09_10855 PF00072 Response regulator receiver domain CDA09_10855 PF13426 PAS domain CDA09_10855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_10860 PF00072 Response regulator receiver domain CDA09_10865 PF03707 Bacterial signalling protein N terminal repeat CDA09_10865 PF00990 Diguanylate cyclase, GGDEF domain CDA09_10865 PF00563 EAL domain CDA09_10870 PF02277 Phosphoribosyltransferase CDA09_10875 PF06253 Trimethylamine methyltransferase (MTTB) CDA09_10885 PF01965 DJ-1/PfpI family CDA09_10885 PF12833 Helix-turn-helix domain CDA09_10900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_10905 PF13183 4Fe-4S dicluster domain CDA09_10905 PF02754 Cysteine-rich domain CDA09_10910 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_10910 PF01012 Electron transfer flavoprotein domain CDA09_10925 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDA09_10930 PF00571 CBS domain CDA09_10930 PF00005 ABC transporter CDA09_10935 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_10940 PF12833 Helix-turn-helix domain CDA09_10940 PF01965 DJ-1/PfpI family CDA09_10945 PF00355 Rieske [2Fe-2S] domain CDA09_10945 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDA09_10950 PF00175 Oxidoreductase NAD-binding domain CDA09_10950 PF00970 Oxidoreductase FAD-binding domain CDA09_10950 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_10955 PF13417 Glutathione S-transferase, N-terminal domain CDA09_10965 PF07690 Major Facilitator Superfamily CDA09_10995 PF03591 AzlC protein CDA09_11010 PF07883 Cupin domain CDA09_11010 PF01381 Helix-turn-helix CDA09_11020 PF12833 Helix-turn-helix domain CDA09_11025 PF06253 Trimethylamine methyltransferase (MTTB) CDA09_11035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_11035 PF03466 LysR substrate binding domain CDA09_11040 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDA09_11040 PF00355 Rieske [2Fe-2S] domain CDA09_11045 PF00571 CBS domain CDA09_11045 PF00005 ABC transporter CDA09_11050 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_11055 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDA09_11065 PF01965 DJ-1/PfpI family CDA09_11065 PF12833 Helix-turn-helix domain CDA09_11070 PF00701 Dihydrodipicolinate synthetase family CDA09_11075 PF01266 FAD dependent oxidoreductase CDA09_11080 PF00171 Aldehyde dehydrogenase family CDA09_11085 PF00175 Oxidoreductase NAD-binding domain CDA09_11085 PF00042 Globin CDA09_11085 PF00970 Oxidoreductase FAD-binding domain CDA09_11090 PF00563 EAL domain CDA09_11090 PF00990 Diguanylate cyclase, GGDEF domain CDA09_11090 PF03707 Bacterial signalling protein N terminal repeat CDA09_11095 PF02875 Mur ligase family, glutamate ligase domain CDA09_11095 PF08245 Mur ligase middle domain CDA09_11100 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDA09_11100 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDA09_11105 PF00551 Formyl transferase CDA09_11110 PF02310 B12 binding domain CDA09_11110 PF02607 B12 binding domain CDA09_11145 PF07690 Major Facilitator Superfamily CDA09_11150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_11150 PF03466 LysR substrate binding domain CDA09_11155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_11155 PF03466 LysR substrate binding domain CDA09_11170 PF01965 DJ-1/PfpI family CDA09_11170 PF12833 Helix-turn-helix domain CDA09_11175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_11175 PF03466 LysR substrate binding domain CDA09_11180 PF01968 Hydantoinase/oxoprolinase CDA09_11180 PF05378 Hydantoinase/oxoprolinase N-terminal region CDA09_11195 PF02607 B12 binding domain CDA09_11195 PF02310 B12 binding domain CDA09_11200 PF00809 Pterin binding enzyme CDA09_11200 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDA09_11200 PF02607 B12 binding domain CDA09_11200 PF02310 B12 binding domain CDA09_11200 PF02574 Homocysteine S-methyltransferase CDA09_11215 PF00464 Serine hydroxymethyltransferase CDA09_11220 PF03313 Serine dehydratase alpha chain CDA09_11220 PF03315 Serine dehydratase beta chain CDA09_11225 PF01266 FAD dependent oxidoreductase CDA09_11235 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDA09_11235 PF17806 Sarcosine oxidase A3 domain CDA09_11235 PF01571 Aminomethyltransferase folate-binding domain CDA09_11235 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_11270 PF09383 NIL domain CDA09_11270 PF00005 ABC transporter CDA09_11275 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_11280 PF03180 NLPA lipoprotein CDA09_11285 PF02152 Dihydroneopterin aldolase CDA09_11295 PF00155 Aminotransferase class I and II CDA09_11305 PF09176 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal CDA09_11315 PF02289 Cyclohydrolase (MCH) CDA09_11320 PF18030 RimK PreATP-grasp domain CDA09_11320 PF08443 RimK-like ATP-grasp domain CDA09_11330 PF08714 Formaldehyde-activating enzyme (Fae) CDA09_11340 PF01590 GAF domain CDA09_11340 PF00158 Sigma-54 interaction domain CDA09_11340 PF02954 Bacterial regulatory protein, Fis family CDA09_11350 PF00977 Histidine biosynthesis protein CDA09_11390 PF02321 Outer membrane efflux protein CDA09_11395 PF00486 Transcriptional regulatory protein, C terminal CDA09_11395 PF00072 Response regulator receiver domain CDA09_11400 PF00512 His Kinase A (phospho-acceptor) domain CDA09_11400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_11400 PF00672 HAMP domain CDA09_11415 PF00873 AcrB/AcrD/AcrF family CDA09_11440 PF00892 EamA-like transporter family CDA09_11470 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_11520 PF07969 Amidohydrolase family CDA09_11540 PF04715 Anthranilate synthase component I, N terminal region CDA09_11540 PF00117 Glutamine amidotransferase class-I CDA09_11540 PF00425 chorismate binding enzyme CDA09_11550 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDA09_11550 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDA09_11555 PF01227 GTP cyclohydrolase I CDA09_11560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_11560 PF03466 LysR substrate binding domain CDA09_11565 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CDA09_11565 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CDA09_11570 PF00101 Ribulose bisphosphate carboxylase, small chain CDA09_11575 PF17866 AAA lid domain CDA09_11575 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_11580 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CDA09_11585 PF00485 Phosphoribulokinase / Uridine kinase family CDA09_11590 PF00456 Transketolase, thiamine diphosphate binding domain CDA09_11590 PF02780 Transketolase, C-terminal domain CDA09_11590 PF02779 Transketolase, pyrimidine binding domain CDA09_11595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDA09_11595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDA09_11600 PF00162 Phosphoglycerate kinase CDA09_11605 PF01116 Fructose-bisphosphate aldolase class-II CDA09_11610 PF00689 Cation transporting ATPase, C-terminus CDA09_11610 PF00690 Cation transporter/ATPase, N-terminus CDA09_11625 PF03824 High-affinity nickel-transport protein CDA09_11640 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_11645 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_11675 PF01758 Sodium Bile acid symporter family CDA09_11680 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDA09_11690 PF02798 Glutathione S-transferase, N-terminal domain CDA09_11695 PF00107 Zinc-binding dehydrogenase CDA09_11695 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_11725 PF01361 Tautomerase enzyme CDA09_11730 PF17191 RecG wedge domain CDA09_11730 PF00271 Helicase conserved C-terminal domain CDA09_11730 PF00270 DEAD/DEAH box helicase CDA09_11735 PF02558 Ketopantoate reductase PanE/ApbA CDA09_11735 PF08546 Ketopantoate reductase PanE/ApbA C terminal CDA09_11740 PF07759 Protein of unknown function (DUF1615) CDA09_11745 PF00301 Rubredoxin CDA09_11750 PF00378 Enoyl-CoA hydratase/isomerase CDA09_11755 PF00501 AMP-binding enzyme CDA09_11755 PF13193 AMP-binding enzyme C-terminal domain CDA09_11760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_11760 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_11760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_11765 PF12802 MarR family CDA09_11770 PF00106 short chain dehydrogenase CDA09_11775 PF00378 Enoyl-CoA hydratase/isomerase CDA09_11780 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_11780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_11780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_11790 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_11795 PF00378 Enoyl-CoA hydratase/isomerase CDA09_11800 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_11800 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CDA09_11800 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_11805 PF00108 Thiolase, N-terminal domain CDA09_11805 PF02803 Thiolase, C-terminal domain CDA09_11830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_11830 PF00205 Thiamine pyrophosphate enzyme, central domain CDA09_11830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDA09_11835 PF01037 Lrp/AsnC ligand binding domain CDA09_11840 PF05951 Bacterial protein of unknown function (DUF882) CDA09_11845 PF01471 Putative peptidoglycan binding domain CDA09_11845 PF03734 L,D-transpeptidase catalytic domain CDA09_11850 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDA09_11850 PF00364 Biotin-requiring enzyme CDA09_11850 PF02817 e3 binding domain CDA09_11855 PF02780 Transketolase, C-terminal domain CDA09_11855 PF02779 Transketolase, pyrimidine binding domain CDA09_11860 PF00676 Dehydrogenase E1 component CDA09_11865 PF02743 Cache domain CDA09_11865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_11865 PF00672 HAMP domain CDA09_11880 PF13361 UvrD-like helicase C-terminal domain CDA09_11880 PF00580 UvrD/REP helicase N-terminal domain CDA09_11890 PF00578 AhpC/TSA family CDA09_11895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDA09_11900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDA09_11900 PF00005 ABC transporter CDA09_11905 PF01464 Transglycosylase SLT domain CDA09_11905 PF01476 LysM domain CDA09_11910 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDA09_11910 PF00753 Metallo-beta-lactamase superfamily CDA09_11920 PF00075 RNase H CDA09_11925 PF00929 Exonuclease CDA09_11940 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDA09_11950 PF00034 Cytochrome c CDA09_11950 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_11965 PF00990 Diguanylate cyclase, GGDEF domain CDA09_11965 PF00360 Phytochrome region CDA09_11965 PF01590 GAF domain CDA09_11965 PF00563 EAL domain CDA09_11970 PF01568 Molydopterin dinucleotide binding domain CDA09_11970 PF00384 Molybdopterin oxidoreductase CDA09_11970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_11980 PF03150 Di-haem cytochrome c peroxidase CDA09_11980 PF00034 Cytochrome c CDA09_11985 PF00034 Cytochrome c CDA09_11985 PF03150 Di-haem cytochrome c peroxidase CDA09_11990 PF02954 Bacterial regulatory protein, Fis family CDA09_11990 PF00072 Response regulator receiver domain CDA09_11990 PF00158 Sigma-54 interaction domain CDA09_11995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_11995 PF00989 PAS fold CDA09_11995 PF00512 His Kinase A (phospho-acceptor) domain CDA09_12000 PF01053 Cys/Met metabolism PLP-dependent enzyme CDA09_12005 PF00892 EamA-like transporter family CDA09_12010 PF03150 Di-haem cytochrome c peroxidase CDA09_12010 PF00034 Cytochrome c CDA09_12020 PF00899 ThiF family CDA09_12025 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_12030 PF00578 AhpC/TSA family CDA09_12030 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDA09_12055 PF04241 Protein of unknown function (DUF423) CDA09_12060 PF07690 Major Facilitator Superfamily CDA09_12065 PF00005 ABC transporter CDA09_12070 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_12070 PF00005 ABC transporter CDA09_12075 PF11862 Domain of unknown function (DUF3382) CDA09_12075 PF02653 Branched-chain amino acid transport system / permease component CDA09_12080 PF02653 Branched-chain amino acid transport system / permease component CDA09_12090 PF13193 AMP-binding enzyme C-terminal domain CDA09_12090 PF00501 AMP-binding enzyme CDA09_12100 PF00378 Enoyl-CoA hydratase/isomerase CDA09_12105 PF00107 Zinc-binding dehydrogenase CDA09_12105 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_12110 PF00378 Enoyl-CoA hydratase/isomerase CDA09_12120 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDA09_12120 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_12120 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDA09_12145 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_12150 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_12155 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_12160 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_12165 PF01202 Shikimate kinase CDA09_12175 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDA09_12210 PF07995 Glucose / Sorbosone dehydrogenase CDA09_12230 PF07729 FCD domain CDA09_12230 PF00392 Bacterial regulatory proteins, gntR family CDA09_12235 PF13458 Periplasmic binding protein CDA09_12240 PF02653 Branched-chain amino acid transport system / permease component CDA09_12245 PF02653 Branched-chain amino acid transport system / permease component CDA09_12245 PF11862 Domain of unknown function (DUF3382) CDA09_12250 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_12250 PF00005 ABC transporter CDA09_12255 PF00005 ABC transporter CDA09_12265 PF00196 Bacterial regulatory proteins, luxR family CDA09_12265 PF00072 Response regulator receiver domain CDA09_12270 PF17200 Single Cache domain 2 CDA09_12270 PF07730 Histidine kinase CDA09_12275 PF02554 Carbon starvation protein CstA CDA09_12275 PF13722 5TM C-terminal transporter carbon starvation CstA CDA09_12280 PF04328 Selenoprotein, putative CDA09_12285 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDA09_12285 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDA09_12295 PF00990 Diguanylate cyclase, GGDEF domain CDA09_12295 PF03707 Bacterial signalling protein N terminal repeat CDA09_12295 PF00563 EAL domain CDA09_12300 PF00672 HAMP domain CDA09_12300 PF01627 Hpt domain CDA09_12300 PF00512 His Kinase A (phospho-acceptor) domain CDA09_12300 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDA09_12300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_12300 PF00072 Response regulator receiver domain CDA09_12315 PF06779 Uncharacterised MFS-type transporter YbfB CDA09_12325 PF01926 50S ribosome-binding GTPase CDA09_12345 PF00171 Aldehyde dehydrogenase family CDA09_12350 PF00571 CBS domain CDA09_12350 PF03471 Transporter associated domain CDA09_12350 PF01595 Cyclin M transmembrane N-terminal domain CDA09_12355 PF07152 YaeQ protein CDA09_12365 PF01636 Phosphotransferase enzyme family CDA09_12370 PF01227 GTP cyclohydrolase I CDA09_12380 PF01384 Phosphate transporter family CDA09_12390 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CDA09_12395 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_12415 PF00877 NlpC/P60 family CDA09_12420 PF04977 Septum formation initiator CDA09_12425 PF03952 Enolase, N-terminal domain CDA09_12425 PF00113 Enolase, C-terminal TIM barrel domain CDA09_12430 PF00793 DAHP synthetase I family CDA09_12435 PF00117 Glutamine amidotransferase class-I CDA09_12435 PF06418 CTP synthase N-terminus CDA09_12445 PF00857 Isochorismatase family CDA09_12465 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CDA09_12465 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CDA09_12465 PF02769 AIR synthase related protein, C-terminal domain CDA09_12475 PF00535 Glycosyl transferase family 2 CDA09_12480 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CDA09_12485 PF01569 PAP2 superfamily CDA09_12505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_12505 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_12520 PF00391 PEP-utilising enzyme, mobile domain CDA09_12520 PF02896 PEP-utilising enzyme, TIM barrel domain CDA09_12520 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CDA09_12525 PF03618 Kinase/pyrophosphorylase CDA09_12535 PF01641 SelR domain CDA09_12550 PF03772 Competence protein CDA09_12550 PF00753 Metallo-beta-lactamase superfamily CDA09_12555 PF00005 ABC transporter CDA09_12560 PF12704 MacB-like periplasmic core domain CDA09_12560 PF02687 FtsX-like permease family CDA09_12565 PF02652 L-lactate permease CDA09_12585 PF02272 DHHA1 domain CDA09_12585 PF17768 RecJ OB domain CDA09_12585 PF01368 DHH family CDA09_12590 PF03922 OmpW family CDA09_12610 PF02463 RecF/RecN/SMC N terminal domain CDA09_12610 PF06470 SMC proteins Flexible Hinge Domain CDA09_12620 PF07690 Major Facilitator Superfamily CDA09_12625 PF07687 Peptidase dimerisation domain CDA09_12625 PF01546 Peptidase family M20/M25/M40 CDA09_12635 PF00730 HhH-GPD superfamily base excision DNA repair protein CDA09_12635 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain CDA09_12640 PF12833 Helix-turn-helix domain CDA09_12640 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDA09_12640 PF02805 Metal binding domain of Ada CDA09_12640 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDA09_12645 PF12843 Putative quorum-sensing-regulated virulence factor CDA09_12650 PF01546 Peptidase family M20/M25/M40 CDA09_12650 PF07687 Peptidase dimerisation domain CDA09_12660 PF03109 ABC1 family CDA09_12665 PF02687 FtsX-like permease family CDA09_12665 PF00005 ABC transporter CDA09_12665 PF12704 MacB-like periplasmic core domain CDA09_12675 PF13533 Biotin-lipoyl like CDA09_12680 PF00440 Bacterial regulatory proteins, tetR family CDA09_12685 PF18073 Rubredoxin metal binding domain CDA09_12695 PF07690 Major Facilitator Superfamily CDA09_12700 PF03167 Uracil DNA glycosylase superfamily CDA09_12705 PF00583 Acetyltransferase (GNAT) family CDA09_12710 PF00814 Glycoprotease family CDA09_12720 PF00486 Transcriptional regulatory protein, C terminal CDA09_12720 PF00072 Response regulator receiver domain CDA09_12725 PF00512 His Kinase A (phospho-acceptor) domain CDA09_12725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_12725 PF00672 HAMP domain CDA09_12730 PF04279 Intracellular septation protein A CDA09_12735 PF03795 YCII-related domain CDA09_12740 PF01722 BolA-like protein CDA09_12750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_12750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_12750 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_12750 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDA09_12755 PF01012 Electron transfer flavoprotein domain CDA09_12755 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_12760 PF01012 Electron transfer flavoprotein domain CDA09_12765 PF00440 Bacterial regulatory proteins, tetR family CDA09_12765 PF08361 MAATS-type transcriptional repressor, C-terminal region CDA09_12770 PF01026 TatD related DNase CDA09_12775 PF00378 Enoyl-CoA hydratase/isomerase CDA09_12790 PF00005 ABC transporter CDA09_12795 PF02405 Permease MlaE CDA09_12800 PF02541 Ppx/GppA phosphatase family CDA09_12805 PF13090 Polyphosphate kinase C-terminal domain 2 CDA09_12805 PF17941 Polyphosphate kinase C-terminal domain 1 CDA09_12805 PF13089 Polyphosphate kinase N-terminal domain CDA09_12805 PF02503 Polyphosphate kinase middle domain CDA09_12810 PF13291 ACT domain CDA09_12810 PF04607 Region found in RelA / SpoT proteins CDA09_12810 PF02824 TGS domain CDA09_12840 PF02542 YgbB family CDA09_12845 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDA09_12855 PF01875 Memo-like protein CDA09_12860 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDA09_12860 PF01871 AMMECR1 CDA09_12865 PF04055 Radical SAM superfamily CDA09_12865 PF13187 4Fe-4S dicluster domain CDA09_12870 PF00156 Phosphoribosyl transferase domain CDA09_12870 PF01738 Dienelactone hydrolase family CDA09_12875 PF02559 CarD-like/TRCF domain CDA09_12875 PF00270 DEAD/DEAH box helicase CDA09_12875 PF00271 Helicase conserved C-terminal domain CDA09_12875 PF03461 TRCF domain CDA09_12875 PF17757 UvrB interaction domain CDA09_12890 PF17850 CysA C-terminal regulatory domain CDA09_12890 PF12857 TOBE-like domain CDA09_12890 PF00005 ABC transporter CDA09_12895 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_12900 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_12915 PF02600 Disulfide bond formation protein DsbB CDA09_12925 PF04264 YceI-like domain CDA09_12940 PF01584 CheW-like domain CDA09_12940 PF02895 Signal transducing histidine kinase, homodimeric domain CDA09_12940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_12940 PF01627 Hpt domain CDA09_12940 PF07194 P2 response regulator binding domain CDA09_12945 PF00072 Response regulator receiver domain CDA09_12955 PF11892 Domain of unknown function (DUF3412) CDA09_12955 PF03641 Possible lysine decarboxylase CDA09_12955 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CDA09_12975 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDA09_12985 PF13085 2Fe-2S iron-sulfur cluster binding domain CDA09_12990 PF00027 Cyclic nucleotide-binding domain CDA09_12990 PF13545 Crp-like helix-turn-helix domain CDA09_12995 PF11953 Domain of unknown function (DUF3470) CDA09_12995 PF00037 4Fe-4S binding domain CDA09_13005 PF00563 EAL domain CDA09_13005 PF03707 Bacterial signalling protein N terminal repeat CDA09_13005 PF00990 Diguanylate cyclase, GGDEF domain CDA09_13015 PF00691 OmpA family CDA09_13040 PF00176 SNF2 family N-terminal domain CDA09_13040 PF00271 Helicase conserved C-terminal domain CDA09_13060 PF11855 Protein of unknown function (DUF3375) CDA09_13070 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system CDA09_13075 PF00117 Glutamine amidotransferase class-I CDA09_13075 PF00958 GMP synthase C terminal domain CDA09_13075 PF02540 NAD synthase CDA09_13080 PF00571 CBS domain CDA09_13080 PF00478 IMP dehydrogenase / GMP reductase domain CDA09_13090 PF03658 RnfH family Ubiquitin CDA09_13095 PF03364 Polyketide cyclase / dehydrase and lipid transport CDA09_13100 PF01668 SmpB protein CDA09_13105 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CDA09_13110 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_13110 PF12911 N-terminal TM domain of oligopeptide transport permease C CDA09_13115 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_13120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDA09_13130 PF05698 Bacterial trigger factor protein (TF) C-terminus CDA09_13135 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_13135 PF10431 C-terminal, D2-small domain, of ClpB protein CDA09_13135 PF02861 Clp amino terminal domain, pathogenicity island component CDA09_13135 PF07724 AAA domain (Cdc48 subfamily) CDA09_13135 PF17871 AAA lid domain CDA09_13145 PF02391 MoaE protein CDA09_13150 PF02597 ThiS family CDA09_13155 PF03454 MoeA C-terminal region (domain IV) CDA09_13155 PF00994 Probable molybdopterin binding domain CDA09_13155 PF03453 MoeA N-terminal region (domain I and II) CDA09_13160 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CDA09_13170 PF13307 Helicase C-terminal domain CDA09_13170 PF04851 Type III restriction enzyme, res subunit CDA09_13180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDA09_13180 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_13185 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDA09_13185 PF00364 Biotin-requiring enzyme CDA09_13185 PF02817 e3 binding domain CDA09_13190 PF00676 Dehydrogenase E1 component CDA09_13190 PF16078 2-oxoglutarate dehydrogenase N-terminus CDA09_13190 PF16870 2-oxoglutarate dehydrogenase C-terminal CDA09_13190 PF02779 Transketolase, pyrimidine binding domain CDA09_13195 PF00285 Citrate synthase, C-terminal domain CDA09_13200 PF03937 Flavinator of succinate dehydrogenase CDA09_13205 PF13085 2Fe-2S iron-sulfur cluster binding domain CDA09_13210 PF02910 Fumarate reductase flavoprotein C-term CDA09_13210 PF00890 FAD binding domain CDA09_13225 PF07702 UTRA domain CDA09_13225 PF00392 Bacterial regulatory proteins, gntR family CDA09_13230 PF00056 lactate/malate dehydrogenase, NAD binding domain CDA09_13230 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDA09_13240 PF01176 Translation initiation factor 1A / IF-1 CDA09_13245 PF00211 Adenylate and Guanylate cyclase catalytic domain CDA09_13255 PF13416 Bacterial extracellular solute-binding protein CDA09_13270 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_13275 PF08402 TOBE domain CDA09_13275 PF00005 ABC transporter CDA09_13280 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CDA09_13285 PF04377 Arginine-tRNA-protein transferase, C terminus CDA09_13285 PF04376 Arginine-tRNA-protein transferase, N terminus CDA09_13290 PF01180 Dihydroorotate dehydrogenase CDA09_13295 PF02508 Rnf-Nqr subunit, membrane protein CDA09_13300 PF04060 Putative Fe-S cluster CDA09_13305 PF13375 RnfC Barrel sandwich hybrid domain CDA09_13305 PF13237 4Fe-4S dicluster domain CDA09_13305 PF10531 SLBB domain CDA09_13305 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDA09_13310 PF03116 NQR2, RnfD, RnfE family CDA09_13315 PF04205 FMN-binding domain CDA09_13320 PF02508 Rnf-Nqr subunit, membrane protein CDA09_13325 PF00730 HhH-GPD superfamily base excision DNA repair protein CDA09_13325 PF10576 Iron-sulfur binding domain of endonuclease III CDA09_13325 PF00633 Helix-hairpin-helix motif CDA09_13335 PF01434 Peptidase family M41 CDA09_13335 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_13335 PF17862 AAA+ lid domain CDA09_13350 PF00654 Voltage gated chloride channel CDA09_13355 PF00183 Hsp90 protein CDA09_13355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_13360 PF03449 Transcription elongation factor, N-terminal CDA09_13360 PF01272 Transcription elongation factor, GreA/GreB, C-term CDA09_13400 PF02801 Beta-ketoacyl synthase, C-terminal domain CDA09_13400 PF00109 Beta-ketoacyl synthase, N-terminal domain CDA09_13440 PF00106 short chain dehydrogenase CDA09_13455 PF00717 Peptidase S24-like CDA09_13455 PF01726 LexA DNA binding domain CDA09_13475 PF02371 Transposase IS116/IS110/IS902 family CDA09_13475 PF01548 Transposase CDA09_13495 PF01695 IstB-like ATP binding protein CDA09_13500 PF00665 Integrase core domain CDA09_13515 PF00355 Rieske [2Fe-2S] domain CDA09_13515 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDA09_13520 PF00866 Ring hydroxylating beta subunit CDA09_13540 PF07690 Major Facilitator Superfamily CDA09_13555 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_13555 PF00107 Zinc-binding dehydrogenase CDA09_13565 PF00378 Enoyl-CoA hydratase/isomerase CDA09_13585 PF07044 Protein of unknown function (DUF1329) CDA09_13595 PF00106 short chain dehydrogenase CDA09_13600 PF02803 Thiolase, C-terminal domain CDA09_13600 PF00108 Thiolase, N-terminal domain CDA09_13605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_13605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_13610 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_13625 PF00106 short chain dehydrogenase CDA09_13635 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_13635 PF14759 Reductase C-terminal CDA09_13640 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_13645 PF07690 Major Facilitator Superfamily CDA09_13650 PF00866 Ring hydroxylating beta subunit CDA09_13655 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDA09_13655 PF00355 Rieske [2Fe-2S] domain CDA09_13660 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_13700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_13720 PF01012 Electron transfer flavoprotein domain CDA09_13720 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_13725 PF01012 Electron transfer flavoprotein domain CDA09_13735 PF03466 LysR substrate binding domain CDA09_13735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_13745 PF00589 Phage integrase family CDA09_13745 PF02899 Phage integrase, N-terminal SAM-like domain CDA09_13750 PF00589 Phage integrase family CDA09_13755 PF00589 Phage integrase family CDA09_13755 PF02899 Phage integrase, N-terminal SAM-like domain CDA09_13760 PF04986 Putative transposase CDA09_13760 PF14319 Transposase zinc-binding domain CDA09_13770 PF00589 Phage integrase family CDA09_13770 PF02899 Phage integrase, N-terminal SAM-like domain CDA09_13775 PF00589 Phage integrase family CDA09_13780 PF00589 Phage integrase family CDA09_13780 PF02899 Phage integrase, N-terminal SAM-like domain CDA09_13790 PF00665 Integrase core domain CDA09_13795 PF01695 IstB-like ATP binding protein CDA09_13815 PF01227 GTP cyclohydrolase I CDA09_13820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_13820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_13820 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_13825 PF00378 Enoyl-CoA hydratase/isomerase CDA09_13830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_13830 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_13830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_13835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_13835 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_13835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_13845 PF00067 Cytochrome P450 CDA09_13865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_13865 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_13865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_13875 PF02515 CoA-transferase family III CDA09_13895 PF00067 Cytochrome P450 CDA09_13900 PF08361 MAATS-type transcriptional repressor, C-terminal region CDA09_13900 PF00440 Bacterial regulatory proteins, tetR family CDA09_13905 PF01593 Flavin containing amine oxidoreductase CDA09_13915 PF13193 AMP-binding enzyme C-terminal domain CDA09_13915 PF00501 AMP-binding enzyme CDA09_13925 PF00563 EAL domain CDA09_13925 PF03707 Bacterial signalling protein N terminal repeat CDA09_13925 PF00990 Diguanylate cyclase, GGDEF domain CDA09_13930 PF00925 GTP cyclohydrolase II CDA09_13975 PF13614 AAA domain CDA09_14085 PF13098 Thioredoxin-like domain CDA09_14085 PF10411 Disulfide bond isomerase protein N-terminus CDA09_14120 PF04002 RadC-like JAB domain CDA09_14140 PF03707 Bacterial signalling protein N terminal repeat CDA09_14140 PF00563 EAL domain CDA09_14140 PF00990 Diguanylate cyclase, GGDEF domain CDA09_14160 PF17761 DUF1016 N-terminal domain CDA09_14160 PF06250 YhcG PDDEXK nuclease domain CDA09_14165 PF12161 HsdM N-terminal domain CDA09_14165 PF02384 N-6 DNA Methylase CDA09_14170 PF04851 Type III restriction enzyme, res subunit CDA09_14170 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) CDA09_14170 PF00271 Helicase conserved C-terminal domain CDA09_14170 PF08463 EcoEI R protein C-terminal CDA09_14260 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDA09_14265 PF13542 Helix-turn-helix domain of transposase family ISL3 CDA09_14265 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CDA09_14265 PF01610 Transposase CDA09_14270 PF01138 3' exoribonuclease family, domain 1 CDA09_14270 PF03725 3' exoribonuclease family, domain 2 CDA09_14270 PF00575 S1 RNA binding domain CDA09_14270 PF00013 KH domain CDA09_14270 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CDA09_14275 PF00312 Ribosomal protein S15 CDA09_14280 PF16198 tRNA pseudouridylate synthase B C-terminal domain CDA09_14280 PF01509 TruB family pseudouridylate synthase (N terminal domain) CDA09_14280 PF09157 Pseudouridine synthase II TruB, C-terminal CDA09_14285 PF02033 Ribosome-binding factor A CDA09_14290 PF00009 Elongation factor Tu GTP binding domain CDA09_14290 PF11987 Translation-initiation factor 2 CDA09_14290 PF04760 Translation initiation factor IF-2, N-terminal region CDA09_14290 PF08364 Bacterial translation initiation factor IF-2 associated region CDA09_14295 PF13184 NusA-like KH domain CDA09_14295 PF08529 NusA N-terminal domain CDA09_14300 PF02576 RimP N-terminal domain CDA09_14300 PF17384 RimP C-terminal SH3 domain CDA09_14305 PF00849 RNA pseudouridylate synthase CDA09_14305 PF01479 S4 domain CDA09_14310 PF04079 Segregation and condensation complex subunit ScpB CDA09_14315 PF02616 Segregation and condensation protein ScpA CDA09_14320 PF00579 tRNA synthetases class I (W and Y) CDA09_14325 PF02163 Peptidase family M50 CDA09_14330 PF01300 Telomere recombination CDA09_14335 PF02811 PHP domain CDA09_14340 PF01571 Aminomethyltransferase folate-binding domain CDA09_14340 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDA09_14345 PF01597 Glycine cleavage H-protein CDA09_14350 PF02347 Glycine cleavage system P-protein CDA09_14365 PF03552 Cellulose synthase CDA09_14365 PF00535 Glycosyl transferase family 2 CDA09_14365 PF07238 PilZ domain CDA09_14370 PF03466 LysR substrate binding domain CDA09_14370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_14375 PF00175 Oxidoreductase NAD-binding domain CDA09_14375 PF00970 Oxidoreductase FAD-binding domain CDA09_14385 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDA09_14385 PF00364 Biotin-requiring enzyme CDA09_14385 PF02817 e3 binding domain CDA09_14390 PF03707 Bacterial signalling protein N terminal repeat CDA09_14390 PF00990 Diguanylate cyclase, GGDEF domain CDA09_14390 PF00563 EAL domain CDA09_14395 PF00005 ABC transporter CDA09_14395 PF12848 ABC transporter CDA09_14400 PF00753 Metallo-beta-lactamase superfamily CDA09_14405 PF03471 Transporter associated domain CDA09_14405 PF02080 TrkA-C domain CDA09_14405 PF00999 Sodium/hydrogen exchanger family CDA09_14420 PF02687 FtsX-like permease family CDA09_14420 PF00005 ABC transporter CDA09_14420 PF12704 MacB-like periplasmic core domain CDA09_14425 PF00005 ABC transporter CDA09_14435 PF13426 PAS domain CDA09_14435 PF08448 PAS fold CDA09_14435 PF08447 PAS fold CDA09_14435 PF00563 EAL domain CDA09_14435 PF00990 Diguanylate cyclase, GGDEF domain CDA09_14435 PF05231 MASE1 CDA09_14450 PF01593 Flavin containing amine oxidoreductase CDA09_14455 PF00005 ABC transporter CDA09_14460 PF13472 GDSL-like Lipase/Acylhydrolase family CDA09_14465 PF00586 AIR synthase related protein, N-terminal domain CDA09_14465 PF02769 AIR synthase related protein, C-terminal domain CDA09_14470 PF00581 Rhodanese-like domain CDA09_14475 PF00072 Response regulator receiver domain CDA09_14475 PF02954 Bacterial regulatory protein, Fis family CDA09_14475 PF00158 Sigma-54 interaction domain CDA09_14480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_14480 PF00512 His Kinase A (phospho-acceptor) domain CDA09_14485 PF00664 ABC transporter transmembrane region CDA09_14485 PF00005 ABC transporter CDA09_14495 PF00171 Aldehyde dehydrogenase family CDA09_14500 PF13607 Succinyl-CoA ligase like flavodoxin domain CDA09_14500 PF13380 CoA binding domain CDA09_14500 PF00583 Acetyltransferase (GNAT) family CDA09_14510 PF17674 HHH domain CDA09_14510 PF00575 S1 RNA binding domain CDA09_14510 PF09371 Tex-like protein N-terminal domain CDA09_14510 PF16921 Tex protein YqgF-like domain CDA09_14515 PF03960 ArsC family CDA09_14520 PF01430 Hsp33 protein CDA09_14525 PF03775 Septum formation inhibitor MinC, C-terminal domain CDA09_14525 PF05209 Septum formation inhibitor MinC, N-terminal domain CDA09_14530 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDA09_14535 PF03776 Septum formation topological specificity factor MinE CDA09_14540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_14540 PF00672 HAMP domain CDA09_14540 PF02743 Cache domain CDA09_14545 PF01336 OB-fold nucleic acid binding domain CDA09_14545 PF00152 tRNA synthetases class II (D, K and N) CDA09_14550 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CDA09_14550 PF01266 FAD dependent oxidoreductase CDA09_14555 PF07730 Histidine kinase CDA09_14555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_14560 PF00196 Bacterial regulatory proteins, luxR family CDA09_14560 PF00072 Response regulator receiver domain CDA09_14580 PF02830 V4R domain CDA09_14580 PF00158 Sigma-54 interaction domain CDA09_14580 PF06505 Activator of aromatic catabolism CDA09_14580 PF02954 Bacterial regulatory protein, Fis family CDA09_14585 PF00975 Thioesterase domain CDA09_14585 PF00668 Condensation domain CDA09_14585 PF00391 PEP-utilising enzyme, mobile domain CDA09_14585 PF08241 Methyltransferase domain CDA09_14585 PF13193 AMP-binding enzyme C-terminal domain CDA09_14585 PF00550 Phosphopantetheine attachment site CDA09_14585 PF00501 AMP-binding enzyme CDA09_14590 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CDA09_14590 PF00391 PEP-utilising enzyme, mobile domain CDA09_14590 PF02896 PEP-utilising enzyme, TIM barrel domain CDA09_14595 PF00571 CBS domain CDA09_14600 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CDA09_14610 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CDA09_14620 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CDA09_14625 PF02441 Flavoprotein CDA09_14635 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CDA09_14635 PF00293 NUDIX domain CDA09_14635 PF09297 NADH pyrophosphatase zinc ribbon domain CDA09_14645 PF00149 Calcineurin-like phosphoesterase CDA09_14660 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CDA09_14660 PF09297 NADH pyrophosphatase zinc ribbon domain CDA09_14660 PF00293 NUDIX domain CDA09_14685 PF00392 Bacterial regulatory proteins, gntR family CDA09_14685 PF00155 Aminotransferase class I and II CDA09_14690 PF03707 Bacterial signalling protein N terminal repeat CDA09_14690 PF00990 Diguanylate cyclase, GGDEF domain CDA09_14690 PF00563 EAL domain CDA09_14695 PF00072 Response regulator receiver domain CDA09_14700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_14700 PF00512 His Kinase A (phospho-acceptor) domain CDA09_14700 PF13188 PAS domain CDA09_14700 PF00989 PAS fold CDA09_14705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_14705 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDA09_14705 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_14705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_14710 PF00106 short chain dehydrogenase CDA09_14715 PF02803 Thiolase, C-terminal domain CDA09_14715 PF00108 Thiolase, N-terminal domain CDA09_14720 PF00378 Enoyl-CoA hydratase/isomerase CDA09_14725 PF00501 AMP-binding enzyme CDA09_14725 PF13193 AMP-binding enzyme C-terminal domain CDA09_14735 PF00005 ABC transporter CDA09_14740 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_14740 PF00005 ABC transporter CDA09_14750 PF00440 Bacterial regulatory proteins, tetR family CDA09_14750 PF17932 Tetracyclin repressor-like, C-terminal domain CDA09_14755 PF00156 Phosphoribosyl transferase domain CDA09_14755 PF01738 Dienelactone hydrolase family CDA09_14760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_14760 PF00989 PAS fold CDA09_14760 PF13188 PAS domain CDA09_14760 PF00512 His Kinase A (phospho-acceptor) domain CDA09_14760 PF13426 PAS domain CDA09_14765 PF00990 Diguanylate cyclase, GGDEF domain CDA09_14765 PF03707 Bacterial signalling protein N terminal repeat CDA09_14765 PF00563 EAL domain CDA09_14770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_14770 PF03466 LysR substrate binding domain CDA09_14775 PF00330 Aconitase family (aconitate hydratase) CDA09_14780 PF00694 Aconitase C-terminal domain CDA09_14785 PF00355 Rieske [2Fe-2S] domain CDA09_14790 PF01883 Iron-sulfur cluster assembly protein CDA09_14795 PF01592 NifU-like N terminal domain CDA09_14800 PF00266 Aminotransferase class-V CDA09_14805 PF01458 Uncharacterized protein family (UPF0051) CDA09_14810 PF00005 ABC transporter CDA09_14815 PF01458 Uncharacterized protein family (UPF0051) CDA09_14820 PF13654 AAA domain CDA09_14820 PF05362 Lon protease (S16) C-terminal proteolytic domain CDA09_14825 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CDA09_14825 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CDA09_14830 PF01161 Phosphatidylethanolamine-binding protein CDA09_14850 PF00196 Bacterial regulatory proteins, luxR family CDA09_14855 PF10627 Curli assembly protein CsgE CDA09_14860 PF10614 Type VIII secretion system (T8SS), CsgF protein CDA09_14865 PF03783 Curli production assembly/transport component CsgG CDA09_14870 PF01161 Phosphatidylethanolamine-binding protein CDA09_14880 PF01048 Phosphorylase superfamily CDA09_14890 PF00483 Nucleotidyl transferase CDA09_14895 PF00533 BRCA1 C Terminus (BRCT) domain CDA09_14895 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CDA09_14895 PF12826 Helix-hairpin-helix motif CDA09_14895 PF01653 NAD-dependent DNA ligase adenylation domain CDA09_14895 PF03120 NAD-dependent DNA ligase OB-fold domain CDA09_14900 PF04354 ZipA, C-terminal FtsZ-binding domain CDA09_14905 PF02463 RecF/RecN/SMC N terminal domain CDA09_14910 PF00155 Aminotransferase class I and II CDA09_14915 PF14602 Hexapeptide repeat of succinyl-transferase CDA09_14915 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CDA09_14915 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_14920 PF00437 Type II/IV secretion system protein CDA09_14925 PF07687 Peptidase dimerisation domain CDA09_14925 PF01546 Peptidase family M20/M25/M40 CDA09_14930 PF05175 Methyltransferase small domain CDA09_14935 PF04384 Iron-sulphur cluster assembly CDA09_14940 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_14945 PF00012 Hsp70 protein CDA09_14950 PF07743 HSCB C-terminal oligomerisation domain CDA09_14955 PF01521 Iron-sulphur cluster biosynthesis CDA09_14960 PF01592 NifU-like N terminal domain CDA09_14965 PF00266 Aminotransferase class-V CDA09_14970 PF00266 Aminotransferase class-V CDA09_14975 PF02082 Transcriptional regulator CDA09_14980 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_14985 PF00588 SpoU rRNA Methylase family CDA09_14990 PF00459 Inositol monophosphatase family CDA09_14995 PF00271 Helicase conserved C-terminal domain CDA09_14995 PF00270 DEAD/DEAH box helicase CDA09_14995 PF03880 DbpA RNA binding domain CDA09_15035 PF00145 C-5 cytosine-specific DNA methylase CDA09_15035 PF01381 Helix-turn-helix CDA09_15070 PF01695 IstB-like ATP binding protein CDA09_15075 PF00665 Integrase core domain CDA09_15095 PF03466 LysR substrate binding domain CDA09_15095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_15105 PF02534 Type IV secretory system Conjugative DNA transfer CDA09_15115 PF00437 Type II/IV secretion system protein CDA09_15120 PF04956 TrbC/VIRB2 family CDA09_15130 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CDA09_15150 PF03524 Conjugal transfer protein CDA09_15155 PF03743 Bacterial conjugation TrbI-like protein CDA09_15180 PF01066 CDP-alcohol phosphatidyltransferase CDA09_15185 PF02151 UvrB/uvrC motif CDA09_15185 PF01541 GIY-YIG catalytic domain CDA09_15185 PF08459 UvrC Helix-hairpin-helix N-terminal CDA09_15190 PF00933 Glycosyl hydrolase family 3 N terminal domain CDA09_15195 PF01648 4'-phosphopantetheinyl transferase superfamily CDA09_15200 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CDA09_15205 PF02565 Recombination protein O C terminal CDA09_15205 PF11967 Recombination protein O N terminal CDA09_15210 PF07650 KH domain CDA09_15210 PF01926 50S ribosome-binding GTPase CDA09_15215 PF00035 Double-stranded RNA binding motif CDA09_15215 PF14622 Ribonuclease-III-like CDA09_15225 PF10502 Signal peptidase, peptidase S26 CDA09_15230 PF03144 Elongation factor Tu domain 2 CDA09_15230 PF00009 Elongation factor Tu GTP binding domain CDA09_15230 PF00679 Elongation factor G C-terminus CDA09_15230 PF06421 GTP-binding protein LepA C-terminus CDA09_15240 PF13180 PDZ domain CDA09_15260 PF08281 Sigma-70, region 4 CDA09_15260 PF04542 Sigma-70 region 2 CDA09_15265 PF02910 Fumarate reductase flavoprotein C-term CDA09_15265 PF00890 FAD binding domain CDA09_15275 PF00109 Beta-ketoacyl synthase, N-terminal domain CDA09_15275 PF02801 Beta-ketoacyl synthase, C-terminal domain CDA09_15280 PF00550 Phosphopantetheine attachment site CDA09_15290 PF00698 Acyl transferase domain CDA09_15295 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDA09_15295 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDA09_15300 PF02504 Fatty acid synthesis protein CDA09_15305 PF01783 Ribosomal L32p protein family CDA09_15310 PF02620 Large ribosomal RNA subunit accumulation protein YceD CDA09_15315 PF02545 Maf-like protein CDA09_15320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_15330 PF00849 RNA pseudouridylate synthase CDA09_15330 PF01479 S4 domain CDA09_15335 PF10150 Ribonuclease E/G family CDA09_15335 PF00575 S1 RNA binding domain CDA09_15335 PF12111 Polyribonucleotide phosphorylase C terminal CDA09_15340 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDA09_15345 PF12344 Ultra-violet resistance protein B CDA09_15345 PF17757 UvrB interaction domain CDA09_15345 PF00271 Helicase conserved C-terminal domain CDA09_15345 PF02151 UvrB/uvrC motif CDA09_15345 PF04851 Type III restriction enzyme, res subunit CDA09_15350 PF00155 Aminotransferase class I and II CDA09_15365 PF13654 AAA domain CDA09_15365 PF05362 Lon protease (S16) C-terminal proteolytic domain CDA09_15375 PF06463 Molybdenum Cofactor Synthesis C CDA09_15375 PF04055 Radical SAM superfamily CDA09_15395 PF01546 Peptidase family M20/M25/M40 CDA09_15395 PF07687 Peptidase dimerisation domain CDA09_15400 PF00850 Histone deacetylase domain CDA09_15410 PF01026 TatD related DNase CDA09_15420 PF09115 DNA polymerase III, delta subunit, C terminal CDA09_15425 PF02223 Thymidylate kinase CDA09_15430 PF02618 YceG-like family CDA09_15435 PF01571 Aminomethyltransferase folate-binding domain CDA09_15450 PF17969 L,D-transpeptidase C-terminal domain CDA09_15450 PF03734 L,D-transpeptidase catalytic domain CDA09_15455 PF14437 MafB19-like deaminase CDA09_15505 PF13247 4Fe-4S dicluster domain CDA09_15510 PF01568 Molydopterin dinucleotide binding domain CDA09_15510 PF00384 Molybdopterin oxidoreductase CDA09_15510 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_15515 PF02634 FdhD/NarQ family CDA09_15520 PF07848 PaaX-like protein CDA09_15520 PF08223 PaaX-like protein C-terminal domain CDA09_15525 PF07690 Major Facilitator Superfamily CDA09_15535 PF00037 4Fe-4S binding domain CDA09_15540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_15545 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CDA09_15545 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CDA09_15545 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CDA09_15570 PF00171 Aldehyde dehydrogenase family CDA09_15575 PF01565 FAD binding domain CDA09_15575 PF02913 FAD linked oxidases, C-terminal domain CDA09_15590 PF00589 Phage integrase family CDA09_15590 PF13495 Phage integrase, N-terminal SAM-like domain CDA09_15595 PF13495 Phage integrase, N-terminal SAM-like domain CDA09_15595 PF00589 Phage integrase family CDA09_15600 PF04986 Putative transposase CDA09_15600 PF14319 Transposase zinc-binding domain CDA09_15610 PF02371 Transposase IS116/IS110/IS902 family CDA09_15610 PF01548 Transposase CDA09_15625 PF03992 Antibiotic biosynthesis monooxygenase CDA09_15630 PF00378 Enoyl-CoA hydratase/isomerase CDA09_15635 PF03595 Voltage-dependent anion channel CDA09_15645 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CDA09_15660 PF00158 Sigma-54 interaction domain CDA09_15660 PF00072 Response regulator receiver domain CDA09_15665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_15665 PF00512 His Kinase A (phospho-acceptor) domain CDA09_15665 PF08448 PAS fold CDA09_15665 PF13188 PAS domain CDA09_15665 PF00072 Response regulator receiver domain CDA09_15670 PF07690 Major Facilitator Superfamily CDA09_15675 PF00501 AMP-binding enzyme CDA09_15675 PF13193 AMP-binding enzyme C-terminal domain CDA09_15685 PF02321 Outer membrane efflux protein CDA09_15690 PF00873 AcrB/AcrD/AcrF family CDA09_15695 PF00529 HlyD membrane-fusion protein of T1SS CDA09_15695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_15700 PF00440 Bacterial regulatory proteins, tetR family CDA09_15700 PF13977 BetI-type transcriptional repressor, C-terminal CDA09_15715 PF00034 Cytochrome c CDA09_15720 PF01327 Polypeptide deformylase CDA09_15730 PF13532 2OG-Fe(II) oxygenase superfamily CDA09_15740 PF00216 Bacterial DNA-binding protein CDA09_15745 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_15745 PF05362 Lon protease (S16) C-terminal proteolytic domain CDA09_15745 PF02190 ATP-dependent protease La (LON) substrate-binding domain CDA09_15750 PF07724 AAA domain (Cdc48 subfamily) CDA09_15750 PF10431 C-terminal, D2-small domain, of ClpB protein CDA09_15750 PF06689 ClpX C4-type zinc finger CDA09_15755 PF00574 Clp protease CDA09_15760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDA09_15760 PF05698 Bacterial trigger factor protein (TF) C-terminus CDA09_15760 PF05697 Bacterial trigger factor protein (TF) CDA09_15765 PF08298 PrkA AAA domain CDA09_15765 PF06798 PrkA serine protein kinase C-terminal domain CDA09_15770 PF04285 Protein of unknown function (DUF444) CDA09_15775 PF04293 SpoVR like protein CDA09_15780 PF03853 YjeF-related protein N-terminus CDA09_15780 PF01256 Carbohydrate kinase CDA09_15785 PF00072 Response regulator receiver domain CDA09_15790 PF00892 EamA-like transporter family CDA09_15795 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CDA09_15795 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CDA09_15800 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_15800 PF14821 Threonine synthase N terminus CDA09_15805 PF01842 ACT domain CDA09_15805 PF00742 Homoserine dehydrogenase CDA09_15805 PF03447 Homoserine dehydrogenase, NAD binding domain CDA09_15810 PF00155 Aminotransferase class I and II CDA09_15820 PF00578 AhpC/TSA family CDA09_15825 PF13638 PIN domain CDA09_15825 PF02562 PhoH-like protein CDA09_15840 PF00877 NlpC/P60 family CDA09_15845 PF00149 Calcineurin-like phosphoesterase CDA09_15855 PF02735 Ku70/Ku80 beta-barrel domain CDA09_15860 PF01068 ATP dependent DNA ligase domain CDA09_15860 PF13298 DNA polymerase Ligase (LigD) CDA09_15860 PF04679 ATP dependent DNA ligase C terminal region CDA09_15870 PF11791 Aconitate B N-terminal domain CDA09_15870 PF00330 Aconitase family (aconitate hydratase) CDA09_15870 PF06434 Aconitate hydratase 2 N-terminus CDA09_15875 PF00330 Aconitase family (aconitate hydratase) CDA09_15875 PF00694 Aconitase C-terminal domain CDA09_15905 PF03692 Putative zinc- or iron-chelating domain CDA09_15915 PF03695 Uncharacterised protein family (UPF0149) CDA09_15915 PF02810 SEC-C motif CDA09_15920 PF02390 Putative methyltransferase CDA09_15925 PF01207 Dihydrouridine synthase (Dus) CDA09_15930 PF01197 Ribosomal protein L31 CDA09_15940 PF00929 Exonuclease CDA09_15945 PF16491 CAAX prenyl protease N-terminal, five membrane helices CDA09_15945 PF01435 Peptidase family M48 CDA09_15950 PF03193 RsgA GTPase CDA09_15955 PF02803 Thiolase, C-terminal domain CDA09_15955 PF00108 Thiolase, N-terminal domain CDA09_15960 PF17113 Regulatory signalling modulator protein AmpE CDA09_15960 PF03186 CobD/Cbib protein CDA09_15965 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDA09_15970 PF00085 Thioredoxin CDA09_15975 PF02580 D-Tyr-tRNA(Tyr) deacylase CDA09_15985 PF01810 LysE type translocator CDA09_15995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDA09_15995 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDA09_16005 PF03466 LysR substrate binding domain CDA09_16005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_16010 PF10415 Fumarase C C-terminus CDA09_16010 PF00206 Lyase CDA09_16025 PF00082 Subtilase family CDA09_16025 PF05922 Peptidase inhibitor I9 CDA09_16030 PF00664 ABC transporter transmembrane region CDA09_16030 PF00005 ABC transporter CDA09_16040 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit CDA09_16055 PF00171 Aldehyde dehydrogenase family CDA09_16070 PF03176 MMPL family CDA09_16080 PF07044 Protein of unknown function (DUF1329) CDA09_16090 PF13426 PAS domain CDA09_16090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_16090 PF08447 PAS fold CDA09_16095 PF03928 Haem-degrading CDA09_16110 PF01053 Cys/Met metabolism PLP-dependent enzyme CDA09_16135 PF00374 Nickel-dependent hydrogenase CDA09_16140 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDA09_16145 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDA09_16150 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDA09_16150 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDA09_16155 PF03477 ATP cone domain CDA09_16155 PF02867 Ribonucleotide reductase, barrel domain CDA09_16155 PF00317 Ribonucleotide reductase, all-alpha domain CDA09_16160 PF00293 NUDIX domain CDA09_16165 PF00361 Proton-conducting membrane transporter CDA09_16170 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CDA09_16170 PF00361 Proton-conducting membrane transporter CDA09_16175 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDA09_16175 PF00361 Proton-conducting membrane transporter CDA09_16180 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDA09_16185 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CDA09_16190 PF12838 4Fe-4S dicluster domain CDA09_16195 PF00146 NADH dehydrogenase CDA09_16200 PF00384 Molybdopterin oxidoreductase CDA09_16200 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDA09_16200 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CDA09_16205 PF10531 SLBB domain CDA09_16205 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDA09_16205 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDA09_16215 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CDA09_16220 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CDA09_16225 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDA09_16230 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CDA09_16240 PF03840 Preprotein translocase SecG subunit CDA09_16245 PF00121 Triosephosphate isomerase CDA09_16250 PF00005 ABC transporter CDA09_16260 PF12849 PBP superfamily domain CDA09_16265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDA09_16265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDA09_16265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDA09_16265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDA09_16270 PF00809 Pterin binding enzyme CDA09_16275 PF17862 AAA+ lid domain CDA09_16275 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_16275 PF06480 FtsH Extracellular CDA09_16275 PF01434 Peptidase family M41 CDA09_16280 PF01728 FtsJ-like methyltransferase CDA09_16285 PF01985 CRS1 / YhbY (CRM) domain CDA09_16290 PF01272 Transcription elongation factor, GreA/GreB, C-term CDA09_16290 PF03449 Transcription elongation factor, N-terminal CDA09_16295 PF02142 MGS-like domain CDA09_16295 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDA09_16295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDA09_16300 PF00117 Glutamine amidotransferase class-I CDA09_16300 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CDA09_16305 PF05173 Dihydrodipicolinate reductase, C-terminus CDA09_16305 PF01113 Dihydrodipicolinate reductase, N-terminus CDA09_16310 PF04355 SmpA / OmlA family CDA09_16315 PF01475 Ferric uptake regulator family CDA09_16320 PF02463 RecF/RecN/SMC N terminal domain CDA09_16325 PF01513 ATP-NAD kinase CDA09_16330 PF01628 HrcA protein C terminal domain CDA09_16330 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CDA09_16335 PF00762 Ferrochelatase CDA09_16345 PF00069 Protein kinase domain CDA09_16345 PF03793 PASTA domain CDA09_16350 PF01025 GrpE CDA09_16355 PF00012 Hsp70 protein CDA09_16360 PF00226 DnaJ domain CDA09_16360 PF01556 DnaJ C terminal domain CDA09_16360 PF00684 DnaJ central domain CDA09_16365 PF09190 DALR domain CDA09_16365 PF01406 tRNA synthetases class I (C) catalytic domain CDA09_16380 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDA09_16385 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDA09_16390 PF00149 Calcineurin-like phosphoesterase CDA09_16395 PF00156 Phosphoribosyl transferase domain CDA09_16410 PF08245 Mur ligase middle domain CDA09_16410 PF02875 Mur ligase family, glutamate ligase domain CDA09_16415 PF17848 Acetyl-coA carboxylase zinc finger domain CDA09_16415 PF01039 Carboxyl transferase domain CDA09_16420 PF00290 Tryptophan synthase alpha chain CDA09_16425 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_16430 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CDA09_16435 PF01416 tRNA pseudouridine synthase CDA09_16450 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDA09_16450 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDA09_16455 PF00180 Isocitrate/isopropylmalate dehydrogenase CDA09_16460 PF00694 Aconitase C-terminal domain CDA09_16465 PF00330 Aconitase family (aconitate hydratase) CDA09_16470 PF01435 Peptidase family M48 CDA09_16475 PF12832 MFS_1 like family CDA09_16480 PF01264 Chorismate synthase CDA09_16485 PF01842 ACT domain CDA09_16490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_16490 PF00205 Thiamine pyrophosphate enzyme, central domain CDA09_16490 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDA09_16495 PF00501 AMP-binding enzyme CDA09_16495 PF13193 AMP-binding enzyme C-terminal domain CDA09_16505 PF00037 4Fe-4S binding domain CDA09_16505 PF11953 Domain of unknown function (DUF3470) CDA09_16510 PF00085 Thioredoxin CDA09_16515 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDA09_16515 PF07498 Rho termination factor, N-terminal domain CDA09_16515 PF07497 Rho termination factor, RNA-binding domain CDA09_16520 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_16520 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_16555 PF01565 FAD binding domain CDA09_16555 PF02913 FAD linked oxidases, C-terminal domain CDA09_16560 PF01734 Patatin-like phospholipase CDA09_16565 PF00919 Uncharacterized protein family UPF0004 CDA09_16565 PF04055 Radical SAM superfamily CDA09_16565 PF18693 TRAM domain CDA09_16570 PF07879 PHB/PHA accumulation regulator DNA-binding domain CDA09_16570 PF05233 PHB accumulation regulatory domain CDA09_16575 PF00106 short chain dehydrogenase CDA09_16580 PF00106 short chain dehydrogenase CDA09_16585 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CDA09_16600 PF00849 RNA pseudouridylate synthase CDA09_16605 PF13525 Outer membrane lipoprotein CDA09_16615 PF13406 Transglycosylase SLT domain CDA09_16625 PF01053 Cys/Met metabolism PLP-dependent enzyme CDA09_16635 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_16635 PF14759 Reductase C-terminal CDA09_16640 PF03358 NADPH-dependent FMN reductase CDA09_16645 PF07687 Peptidase dimerisation domain CDA09_16645 PF01546 Peptidase family M20/M25/M40 CDA09_16650 PF03458 UPF0126 domain CDA09_16655 PF07690 Major Facilitator Superfamily CDA09_16670 PF02508 Rnf-Nqr subunit, membrane protein CDA09_16675 PF04060 Putative Fe-S cluster CDA09_16680 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDA09_16680 PF13375 RnfC Barrel sandwich hybrid domain CDA09_16680 PF13237 4Fe-4S dicluster domain CDA09_16680 PF10531 SLBB domain CDA09_16685 PF03116 NQR2, RnfD, RnfE family CDA09_16690 PF04205 FMN-binding domain CDA09_16695 PF02508 Rnf-Nqr subunit, membrane protein CDA09_16700 PF03658 RnfH family Ubiquitin CDA09_16715 PF01464 Transglycosylase SLT domain CDA09_16715 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDA09_16720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDA09_16720 PF02403 Seryl-tRNA synthetase N-terminal domain CDA09_16730 PF12002 MgsA AAA+ ATPase C terminal CDA09_16730 PF16193 AAA C-terminal domain CDA09_16730 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_16735 PF03548 Outer membrane lipoprotein carrier protein LolA CDA09_16740 PF17854 FtsK alpha domain CDA09_16740 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CDA09_16740 PF09397 Ftsk gamma domain CDA09_16740 PF01580 FtsK/SpoIIIE family CDA09_16745 PF13545 Crp-like helix-turn-helix domain CDA09_16745 PF00027 Cyclic nucleotide-binding domain CDA09_16750 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_16755 PF01713 Smr domain CDA09_16760 PF00543 Nitrogen regulatory protein P-II CDA09_16765 PF00795 Carbon-nitrogen hydrolase CDA09_16765 PF02540 NAD synthase CDA09_16775 PF00719 Inorganic pyrophosphatase CDA09_16785 PF00403 Heavy-metal-associated domain CDA09_16790 PF00376 MerR family regulatory protein CDA09_16790 PF09278 MerR, DNA binding CDA09_16800 PF04055 Radical SAM superfamily CDA09_16800 PF06969 HemN C-terminal domain CDA09_16805 PF00027 Cyclic nucleotide-binding domain CDA09_16805 PF13545 Crp-like helix-turn-helix domain CDA09_16815 PF04247 Invasion gene expression up-regulator, SirB CDA09_16825 PF00027 Cyclic nucleotide-binding domain CDA09_16825 PF00520 Ion transport protein CDA09_16830 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CDA09_16830 PF00561 alpha/beta hydrolase fold CDA09_16835 PF10996 Beta-Casp domain CDA09_16835 PF00753 Metallo-beta-lactamase superfamily CDA09_16835 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CDA09_16855 PF13746 4Fe-4S dicluster domain CDA09_16855 PF12801 4Fe-4S binding domain CDA09_16855 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CDA09_16860 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CDA09_16860 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_16875 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDA09_16885 PF00403 Heavy-metal-associated domain CDA09_16890 PF00106 short chain dehydrogenase CDA09_16895 PF00293 NUDIX domain CDA09_16905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_16905 PF06580 Histidine kinase CDA09_16910 PF00114 Pilin (bacterial filament) CDA09_16910 PF07963 Prokaryotic N-terminal methylation motif CDA09_16940 PF07963 Prokaryotic N-terminal methylation motif CDA09_16940 PF14245 Type IV pilin PilA CDA09_16945 PF00300 Histidine phosphatase superfamily (branch 1) CDA09_16960 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_16960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_16960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_16965 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_16965 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_16970 PF00108 Thiolase, N-terminal domain CDA09_16970 PF02803 Thiolase, C-terminal domain CDA09_16975 PF00106 short chain dehydrogenase CDA09_16985 PF00108 Thiolase, N-terminal domain CDA09_16985 PF02803 Thiolase, C-terminal domain CDA09_17000 PF07690 Major Facilitator Superfamily CDA09_17015 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_17015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_17015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_17020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_17020 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_17020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_17035 PF00107 Zinc-binding dehydrogenase CDA09_17035 PF16884 N-terminal domain of oxidoreductase CDA09_17040 PF00378 Enoyl-CoA hydratase/isomerase CDA09_17040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_17040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_17045 PF02803 Thiolase, C-terminal domain CDA09_17045 PF00108 Thiolase, N-terminal domain CDA09_17050 PF00378 Enoyl-CoA hydratase/isomerase CDA09_17065 PF00501 AMP-binding enzyme CDA09_17065 PF13193 AMP-binding enzyme C-terminal domain CDA09_17085 PF07690 Major Facilitator Superfamily CDA09_17090 PF00890 FAD binding domain CDA09_17090 PF14537 Cytochrome c3 CDA09_17095 PF00582 Universal stress protein family CDA09_17110 PF07044 Protein of unknown function (DUF1329) CDA09_17130 PF00106 short chain dehydrogenase CDA09_17135 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_17135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_17145 PF07690 Major Facilitator Superfamily CDA09_17150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_17150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_17150 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_17155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_17155 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_17155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_17160 PF01609 Transposase DDE domain CDA09_17160 PF05598 Transposase domain (DUF772) CDA09_17190 PF01842 ACT domain CDA09_17190 PF00696 Amino acid kinase family CDA09_17190 PF13840 ACT domain CDA09_17205 PF01242 6-pyruvoyl tetrahydropterin synthase CDA09_17210 PF12794 Mechanosensitive ion channel inner membrane domain 1 CDA09_17210 PF00924 Mechanosensitive ion channel CDA09_17210 PF12795 Mechanosensitive ion channel porin domain CDA09_17215 PF13091 PLD-like domain CDA09_17220 PF01029 NusB family CDA09_17220 PF01189 16S rRNA methyltransferase RsmB/F CDA09_17230 PF00551 Formyl transferase CDA09_17235 PF08676 MutL C terminal dimerisation domain CDA09_17235 PF01119 DNA mismatch repair protein, C-terminal domain CDA09_17265 PF00204 DNA gyrase B CDA09_17265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_17265 PF00986 DNA gyrase B subunit, carboxyl terminus CDA09_17265 PF01751 Toprim domain CDA09_17275 PF03746 LamB/YcsF family CDA09_17280 PF02626 Carboxyltransferase domain, subdomain A and B CDA09_17285 PF02682 Carboxyltransferase domain, subdomain C and D CDA09_17295 PF07286 Protein of unknown function (DUF1445) CDA09_17305 PF00521 DNA gyrase/topoisomerase IV, subunit A CDA09_17310 PF13677 Membrane MotB of proton-channel complex MotA/MotB CDA09_17310 PF00691 OmpA family CDA09_17315 PF01618 MotA/TolQ/ExbB proton channel family CDA09_17320 PF04542 Sigma-70 region 2 CDA09_17320 PF04539 Sigma-70 region 3 CDA09_17320 PF04545 Sigma-70, region 4 CDA09_17330 PF00448 SRP54-type protein, GTPase domain CDA09_17335 PF00771 FHIPEP family CDA09_17340 PF01312 FlhB HrpN YscU SpaS Family CDA09_17360 PF05958 tRNA (Uracil-5-)-methyltransferase CDA09_17375 PF06804 NlpB/DapX lipoprotein CDA09_17380 PF00701 Dihydrodipicolinate synthetase family CDA09_17385 PF00850 Histone deacetylase domain CDA09_17390 PF07726 ATPase family associated with various cellular activities (AAA) CDA09_17390 PF17863 AAA lid domain CDA09_17400 PF13559 Domain of unknown function (DUF4129) CDA09_17400 PF01841 Transglutaminase-like superfamily CDA09_17400 PF11992 Domain of unknown function (DUF3488) CDA09_17405 PF13406 Transglycosylase SLT domain CDA09_17410 PF04542 Sigma-70 region 2 CDA09_17410 PF00140 Sigma-70 factor, region 1.2 CDA09_17410 PF04539 Sigma-70 region 3 CDA09_17410 PF04545 Sigma-70, region 4 CDA09_17415 PF01551 Peptidase family M23 CDA09_17415 PF01476 LysM domain CDA09_17425 PF01975 Survival protein SurE CDA09_17440 PF00216 Bacterial DNA-binding protein CDA09_17445 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CDA09_17445 PF03483 B3/4 domain CDA09_17445 PF03484 tRNA synthetase B5 domain CDA09_17445 PF03147 Ferredoxin-fold anticodon binding domain CDA09_17445 PF01588 Putative tRNA binding domain CDA09_17450 PF01409 tRNA synthetases class II core domain (F) CDA09_17450 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CDA09_17455 PF00453 Ribosomal protein L20 CDA09_17460 PF01632 Ribosomal protein L35 CDA09_17465 PF00707 Translation initiation factor IF-3, C-terminal domain CDA09_17465 PF05198 Translation initiation factor IF-3, N-terminal domain CDA09_17470 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDA09_17470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDA09_17470 PF02824 TGS domain CDA09_17470 PF03129 Anticodon binding domain CDA09_17485 PF13186 Iron-sulfur cluster-binding domain CDA09_17485 PF04055 Radical SAM superfamily CDA09_17490 PF17805 AsnC-like ligand binding domain CDA09_17495 PF13404 AsnC-type helix-turn-helix domain CDA09_17495 PF17805 AsnC-like ligand binding domain CDA09_17500 PF17805 AsnC-like ligand binding domain CDA09_17510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_17515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_17515 PF10414 Sirohaem synthase dimerisation region CDA09_17515 PF14824 Sirohaem biosynthesis protein central CDA09_17520 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_17530 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_17535 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDA09_17535 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDA09_17535 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDA09_17540 PF18073 Rubredoxin metal binding domain CDA09_17550 PF00216 Bacterial DNA-binding protein CDA09_17555 PF00575 S1 RNA binding domain CDA09_17560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDA09_17565 PF01842 ACT domain CDA09_17565 PF02153 Prephenate dehydrogenase CDA09_17570 PF01817 Chorismate mutase type II CDA09_17570 PF00800 Prephenate dehydratase CDA09_17570 PF01842 ACT domain CDA09_17575 PF00266 Aminotransferase class-V CDA09_17580 PF03989 DNA gyrase C-terminal domain, beta-propeller CDA09_17580 PF00521 DNA gyrase/topoisomerase IV, subunit A CDA09_17585 PF01979 Amidohydrolase family CDA09_17590 PF00691 OmpA family CDA09_17645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_17665 PF02978 Signal peptide binding domain CDA09_17665 PF02881 SRP54-type protein, helical bundle domain CDA09_17665 PF00448 SRP54-type protein, GTPase domain CDA09_17675 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDA09_17675 PF00437 Type II/IV secretion system protein CDA09_17680 PF00482 Type II secretion system (T2SS), protein F CDA09_17685 PF06750 Bacterial Peptidase A24 N-terminal domain CDA09_17685 PF01478 Type IV leader peptidase family CDA09_17700 PF01336 OB-fold nucleic acid binding domain CDA09_17700 PF00152 tRNA synthetases class II (D, K and N) CDA09_17700 PF02938 GAD domain CDA09_17720 PF00293 NUDIX domain CDA09_17725 PF00011 Hsp20/alpha crystallin family CDA09_17730 PF00696 Amino acid kinase family CDA09_17735 PF00459 Inositol monophosphatase family CDA09_17740 PF00550 Phosphopantetheine attachment site CDA09_17745 PF00501 AMP-binding enzyme CDA09_17745 PF13193 AMP-binding enzyme C-terminal domain CDA09_17750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDA09_17750 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDA09_17755 PF13609 Gram-negative porin CDA09_17760 PF13609 Gram-negative porin CDA09_17765 PF04545 Sigma-70, region 4 CDA09_17765 PF04542 Sigma-70 region 2 CDA09_17765 PF00140 Sigma-70 factor, region 1.2 CDA09_17770 PF02630 SCO1/SenC CDA09_17775 PF01040 UbiA prenyltransferase family CDA09_17795 PF00510 Cytochrome c oxidase subunit III CDA09_17805 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CDA09_17810 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDA09_17815 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDA09_17815 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CDA09_17820 PF01467 Cytidylyltransferase-like CDA09_17825 PF03707 Bacterial signalling protein N terminal repeat CDA09_17825 PF00563 EAL domain CDA09_17825 PF00990 Diguanylate cyclase, GGDEF domain CDA09_17835 PF16124 RecQ zinc-binding CDA09_17835 PF00271 Helicase conserved C-terminal domain CDA09_17835 PF09382 RQC domain CDA09_17835 PF00270 DEAD/DEAH box helicase CDA09_17835 PF00570 HRDC domain CDA09_17840 PF00563 EAL domain CDA09_17840 PF08668 HDOD domain CDA09_17845 PF16916 Dimerisation domain of Zinc Transporter CDA09_17845 PF01545 Cation efflux family CDA09_17855 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDA09_17855 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDA09_17865 PF00501 AMP-binding enzyme CDA09_17865 PF00550 Phosphopantetheine attachment site CDA09_17865 PF00975 Thioesterase domain CDA09_17865 PF00668 Condensation domain CDA09_17865 PF13193 AMP-binding enzyme C-terminal domain CDA09_17880 PF02311 AraC-like ligand binding domain CDA09_17880 PF12833 Helix-turn-helix domain CDA09_17885 PF00012 Hsp70 protein CDA09_17890 PF13458 Periplasmic binding protein CDA09_17895 PF02653 Branched-chain amino acid transport system / permease component CDA09_17900 PF11862 Domain of unknown function (DUF3382) CDA09_17900 PF02653 Branched-chain amino acid transport system / permease component CDA09_17905 PF00005 ABC transporter CDA09_17905 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_17910 PF00005 ABC transporter CDA09_17925 PF01627 Hpt domain CDA09_17925 PF07194 P2 response regulator binding domain CDA09_17925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_17925 PF01584 CheW-like domain CDA09_17925 PF02895 Signal transducing histidine kinase, homodimeric domain CDA09_17930 PF00072 Response regulator receiver domain CDA09_17940 PF01037 Lrp/AsnC ligand binding domain CDA09_17945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDA09_17950 PF01625 Peptide methionine sulfoxide reductase CDA09_17955 PF04357 TamB, inner membrane protein subunit of TAM complex CDA09_17960 PF00218 Indole-3-glycerol phosphate synthase CDA09_17965 PF02885 Glycosyl transferase family, helical bundle domain CDA09_17965 PF00591 Glycosyl transferase family, a/b domain CDA09_17970 PF00117 Glutamine amidotransferase class-I CDA09_17975 PF04715 Anthranilate synthase component I, N terminal region CDA09_17975 PF00425 chorismate binding enzyme CDA09_17980 PF13419 Haloacid dehalogenase-like hydrolase CDA09_17990 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDA09_17990 PF00437 Type II/IV secretion system protein CDA09_17995 PF12706 Beta-lactamase superfamily domain CDA09_17995 PF00753 Metallo-beta-lactamase superfamily CDA09_18000 PF00498 FHA domain CDA09_18010 PF02423 Ornithine cyclodeaminase/mu-crystallin family CDA09_18015 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDA09_18020 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CDA09_18025 PF03480 Bacterial extracellular solute-binding protein, family 7 CDA09_18030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_18030 PF00989 PAS fold CDA09_18030 PF00512 His Kinase A (phospho-acceptor) domain CDA09_18035 PF00072 Response regulator receiver domain CDA09_18035 PF00196 Bacterial regulatory proteins, luxR family CDA09_18040 PF01479 S4 domain CDA09_18045 PF09179 TilS substrate binding domain CDA09_18045 PF01171 PP-loop family CDA09_18045 PF11734 TilS substrate C-terminal domain CDA09_18050 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CDA09_18055 PF03471 Transporter associated domain CDA09_18055 PF01595 Cyclin M transmembrane N-terminal domain CDA09_18055 PF00571 CBS domain CDA09_18060 PF00689 Cation transporting ATPase, C-terminus CDA09_18060 PF00690 Cation transporter/ATPase, N-terminus CDA09_18065 PF01027 Inhibitor of apoptosis-promoting Bax1 CDA09_18080 PF02547 Queuosine biosynthesis protein CDA09_18085 PF01702 Queuine tRNA-ribosyltransferase CDA09_18090 PF02699 Preprotein translocase subunit CDA09_18095 PF07549 SecD/SecF GG Motif CDA09_18095 PF02355 Protein export membrane protein CDA09_18095 PF13721 SecD export protein N-terminal TM region CDA09_18100 PF07549 SecD/SecF GG Motif CDA09_18100 PF02355 Protein export membrane protein CDA09_18105 PF01914 MarC family integral membrane protein CDA09_18115 PF00206 Lyase CDA09_18115 PF08328 Adenylosuccinate lyase C-terminal CDA09_18120 PF04379 ApaG domain CDA09_18125 PF00072 Response regulator receiver domain CDA09_18125 PF13426 PAS domain CDA09_18125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_18130 PF01960 ArgJ family CDA09_18140 PF07517 SecA DEAD-like domain CDA09_18140 PF07516 SecA Wing and Scaffold domain CDA09_18140 PF02810 SEC-C motif CDA09_18140 PF01043 SecA preprotein cross-linking domain CDA09_18155 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CDA09_18160 PF00091 Tubulin/FtsZ family, GTPase domain CDA09_18160 PF12327 FtsZ family, C-terminal domain CDA09_18165 PF02491 SHS2 domain inserted in FTSA CDA09_18170 PF03799 Cell division protein FtsQ CDA09_18170 PF08478 POTRA domain, FtsQ-type CDA09_18175 PF07478 D-ala D-ala ligase C-terminus CDA09_18175 PF01820 D-ala D-ala ligase N-terminus CDA09_18180 PF01225 Mur ligase family, catalytic domain CDA09_18180 PF08245 Mur ligase middle domain CDA09_18180 PF02875 Mur ligase family, glutamate ligase domain CDA09_18185 PF04101 Glycosyltransferase family 28 C-terminal domain CDA09_18185 PF03033 Glycosyltransferase family 28 N-terminal domain CDA09_18190 PF01098 Cell cycle protein CDA09_18195 PF08245 Mur ligase middle domain CDA09_18200 PF00953 Glycosyl transferase family 4 CDA09_18200 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CDA09_18205 PF08245 Mur ligase middle domain CDA09_18205 PF02875 Mur ligase family, glutamate ligase domain CDA09_18205 PF01225 Mur ligase family, catalytic domain CDA09_18210 PF01225 Mur ligase family, catalytic domain CDA09_18210 PF02875 Mur ligase family, glutamate ligase domain CDA09_18210 PF08245 Mur ligase middle domain CDA09_18215 PF00905 Penicillin binding protein transpeptidase domain CDA09_18215 PF03717 Penicillin-binding Protein dimerisation domain CDA09_18225 PF01795 MraW methylase family CDA09_18230 PF02381 MraZ protein, putative antitoxin-like CDA09_18245 PF01979 Amidohydrolase family CDA09_18250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_18255 PF02021 Uncharacterised protein family UPF0102 CDA09_18260 PF13580 SIS domain CDA09_18265 PF04972 BON domain CDA09_18270 PF01225 Mur ligase family, catalytic domain CDA09_18270 PF08245 Mur ligase middle domain CDA09_18270 PF02875 Mur ligase family, glutamate ligase domain CDA09_18280 PF00578 AhpC/TSA family CDA09_18285 PF01220 Dehydroquinase class II CDA09_18290 PF00364 Biotin-requiring enzyme CDA09_18295 PF02785 Biotin carboxylase C-terminal domain CDA09_18295 PF00289 Biotin carboxylase, N-terminal domain CDA09_18295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDA09_18310 PF01219 Prokaryotic diacylglycerol kinase CDA09_18315 PF05433 Glycine zipper 2TM domain CDA09_18320 PF00294 pfkB family carbohydrate kinase CDA09_18325 PF01230 HIT domain CDA09_18340 PF00149 Calcineurin-like phosphoesterase CDA09_18345 PF02719 Polysaccharide biosynthesis protein CDA09_18350 PF00953 Glycosyl transferase family 4 CDA09_18355 PF01370 NAD dependent epimerase/dehydratase family CDA09_18380 PF14667 Polysaccharide biosynthesis C-terminal domain CDA09_18380 PF01943 Polysaccharide biosynthesis protein CDA09_18385 PF13439 Glycosyltransferase Family 4 CDA09_18385 PF00534 Glycosyl transferases group 1 CDA09_18395 PF16363 GDP-mannose 4,6 dehydratase CDA09_18400 PF16363 GDP-mannose 4,6 dehydratase CDA09_18405 PF00893 Small Multidrug Resistance protein CDA09_18420 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CDA09_18425 PF00483 Nucleotidyl transferase CDA09_18430 PF16363 GDP-mannose 4,6 dehydratase CDA09_18445 PF08241 Methyltransferase domain CDA09_18450 PF00005 ABC transporter CDA09_18450 PF14524 Wzt C-terminal domain CDA09_18460 PF00483 Nucleotidyl transferase CDA09_18460 PF01050 Mannose-6-phosphate isomerase CDA09_18465 PF01370 NAD dependent epimerase/dehydratase family CDA09_18470 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CDA09_18470 PF00534 Glycosyl transferases group 1 CDA09_18485 PF02321 Outer membrane efflux protein CDA09_18490 PF00581 Rhodanese-like domain CDA09_18500 PF00873 AcrB/AcrD/AcrF family CDA09_18510 PF16295 Tetracyclin repressor-like, C-terminal domain CDA09_18510 PF00440 Bacterial regulatory proteins, tetR family CDA09_18515 PF00194 Eukaryotic-type carbonic anhydrase CDA09_18520 PF01169 Uncharacterized protein family UPF0016 CDA09_18525 PF08543 Phosphomethylpyrimidine kinase CDA09_18530 PF13667 ThiC-associated domain CDA09_18530 PF01964 Radical SAM ThiC family CDA09_18545 PF05690 Thiazole biosynthesis protein ThiG CDA09_18550 PF05690 Thiazole biosynthesis protein ThiG CDA09_18550 PF02597 ThiS family CDA09_18555 PF04055 Radical SAM superfamily CDA09_18560 PF00364 Biotin-requiring enzyme CDA09_18560 PF00561 alpha/beta hydrolase fold CDA09_18565 PF02780 Transketolase, C-terminal domain CDA09_18565 PF02779 Transketolase, pyrimidine binding domain CDA09_18570 PF00676 Dehydrogenase E1 component CDA09_18590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_18590 PF03466 LysR substrate binding domain CDA09_18595 PF00501 AMP-binding enzyme CDA09_18595 PF13193 AMP-binding enzyme C-terminal domain CDA09_18620 PF13360 PQQ-like domain CDA09_18620 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_18635 PF03692 Putative zinc- or iron-chelating domain CDA09_18640 PF02673 Bacitracin resistance protein BacA CDA09_18645 PF05728 Uncharacterised protein family (UPF0227) CDA09_18650 PF01209 ubiE/COQ5 methyltransferase family CDA09_18655 PF00892 EamA-like transporter family CDA09_18660 PF00773 RNB domain CDA09_18670 PF08501 Shikimate dehydrogenase substrate binding domain CDA09_18670 PF01488 Shikimate / quinate 5-dehydrogenase CDA09_18670 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CDA09_18675 PF00912 Transglycosylase CDA09_18680 PF01769 Divalent cation transporter CDA09_18680 PF03448 MgtE intracellular N domain CDA09_18680 PF00571 CBS domain CDA09_18685 PF00202 Aminotransferase class-III CDA09_18690 PF02581 Thiamine monophosphate synthase CDA09_18695 PF08543 Phosphomethylpyrimidine kinase CDA09_18700 PF00072 Response regulator receiver domain CDA09_18705 PF00072 Response regulator receiver domain CDA09_18715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_18715 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CDA09_18720 PF01627 Hpt domain CDA09_18720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_18720 PF09078 CheY binding CDA09_18720 PF01584 CheW-like domain CDA09_18720 PF02895 Signal transducing histidine kinase, homodimeric domain CDA09_18730 PF02622 Uncharacterized ACR, COG1678 CDA09_18735 PF03652 Holliday junction resolvase CDA09_18740 PF00156 Phosphoribosyl transferase domain CDA09_18745 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDA09_18745 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDA09_18750 PF01979 Amidohydrolase family CDA09_18755 PF02594 Uncharacterised ACR, YggU family COG1872 CDA09_18760 PF02325 YGGT family CDA09_18765 PF14748 Pyrroline-5-carboxylate reductase dimerisation CDA09_18765 PF03807 NADP oxidoreductase coenzyme F420-dependent CDA09_18770 PF01168 Alanine racemase, N-terminal domain CDA09_18775 PF00437 Type II/IV secretion system protein CDA09_18780 PF00437 Type II/IV secretion system protein CDA09_18785 PF01170 Putative RNA methylase family UPF0020 CDA09_18785 PF02926 THUMP domain CDA09_18800 PF00970 Oxidoreductase FAD-binding domain CDA09_18800 PF00175 Oxidoreductase NAD-binding domain CDA09_18800 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_18805 PF08668 HDOD domain CDA09_18805 PF00563 EAL domain CDA09_18810 PF00034 Cytochrome c CDA09_18815 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CDA09_18815 PF14489 QueF-like protein CDA09_18820 PF02321 Outer membrane efflux protein CDA09_18830 PF00563 EAL domain CDA09_18830 PF12792 CSS motif domain associated with EAL CDA09_18840 PF00196 Bacterial regulatory proteins, luxR family CDA09_18840 PF00072 Response regulator receiver domain CDA09_18845 PF00529 HlyD membrane-fusion protein of T1SS CDA09_18845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_18850 PF03412 Peptidase C39 family CDA09_18850 PF00664 ABC transporter transmembrane region CDA09_18850 PF00005 ABC transporter CDA09_18855 PF01475 Ferric uptake regulator family CDA09_18860 PF00005 ABC transporter CDA09_18865 PF00950 ABC 3 transport family CDA09_18870 PF01297 Zinc-uptake complex component A periplasmic CDA09_18875 PF01810 LysE type translocator CDA09_18885 PF05164 Cell division protein ZapA CDA09_18895 PF00920 Dehydratase family CDA09_18900 PF04337 Protein of unknown function, DUF480 CDA09_18905 PF01790 Prolipoprotein diacylglyceryl transferase CDA09_18915 PF03707 Bacterial signalling protein N terminal repeat CDA09_18915 PF00990 Diguanylate cyclase, GGDEF domain CDA09_18915 PF00563 EAL domain CDA09_18930 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_18945 PF00210 Ferritin-like domain CDA09_18955 PF01618 MotA/TolQ/ExbB proton channel family CDA09_18960 PF02472 Biopolymer transport protein ExbD/TolR CDA09_18965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_18970 PF12704 MacB-like periplasmic core domain CDA09_18970 PF02687 FtsX-like permease family CDA09_18970 PF00005 ABC transporter CDA09_18975 PF02321 Outer membrane efflux protein CDA09_18980 PF10634 Fe2+ transport protein CDA09_18995 PF03239 Iron permease FTR1 family CDA09_19005 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_19005 PF01799 [2Fe-2S] binding domain CDA09_19010 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDA09_19015 PF07715 TonB-dependent Receptor Plug Domain CDA09_19015 PF00593 TonB dependent receptor CDA09_19045 PF00512 His Kinase A (phospho-acceptor) domain CDA09_19045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_19045 PF00672 HAMP domain CDA09_19050 PF00486 Transcriptional regulatory protein, C terminal CDA09_19050 PF00072 Response regulator receiver domain CDA09_19075 PF00873 AcrB/AcrD/AcrF family CDA09_19145 PF07963 Prokaryotic N-terminal methylation motif CDA09_19145 PF00114 Pilin (bacterial filament) CDA09_19165 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CDA09_19210 PF02954 Bacterial regulatory protein, Fis family CDA09_19210 PF00158 Sigma-54 interaction domain CDA09_19210 PF00072 Response regulator receiver domain CDA09_19215 PF00512 His Kinase A (phospho-acceptor) domain CDA09_19215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_19225 PF00155 Aminotransferase class I and II CDA09_19230 PF01008 Initiation factor 2 subunit family CDA09_19235 PF00596 Class II Aldolase and Adducin N-terminal domain CDA09_19240 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDA09_19240 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDA09_19245 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDA09_19245 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDA09_19250 PF02885 Glycosyl transferase family, helical bundle domain CDA09_19255 PF02678 Pirin CDA09_19255 PF05726 Pirin C-terminal cupin domain CDA09_19260 PF02525 Flavodoxin-like fold CDA09_19265 PF02600 Disulfide bond formation protein DsbB CDA09_19280 PF00873 AcrB/AcrD/AcrF family CDA09_19295 PF00899 ThiF family CDA09_19305 PF00753 Metallo-beta-lactamase superfamily CDA09_19310 PF00155 Aminotransferase class I and II CDA09_19315 PF02954 Bacterial regulatory protein, Fis family CDA09_19315 PF13426 PAS domain CDA09_19315 PF00158 Sigma-54 interaction domain CDA09_19320 PF01144 Coenzyme A transferase CDA09_19325 PF01144 Coenzyme A transferase CDA09_19330 PF16177 Acetyl-coenzyme A synthetase N-terminus CDA09_19330 PF00501 AMP-binding enzyme CDA09_19330 PF13193 AMP-binding enzyme C-terminal domain CDA09_19355 PF08882 Acetone carboxylase gamma subunit CDA09_19360 PF02538 Hydantoinase B/oxoprolinase CDA09_19365 PF05378 Hydantoinase/oxoprolinase N-terminal region CDA09_19365 PF01968 Hydantoinase/oxoprolinase CDA09_19370 PF00436 Single-strand binding protein family CDA09_19375 PF07690 Major Facilitator Superfamily CDA09_19380 PF17755 UvrA DNA-binding domain CDA09_19380 PF17760 UvrA interaction domain CDA09_19390 PF01196 Ribosomal protein L17 CDA09_19395 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CDA09_19395 PF01000 RNA polymerase Rpb3/RpoA insert domain CDA09_19395 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CDA09_19400 PF01479 S4 domain CDA09_19400 PF00163 Ribosomal protein S4/S9 N-terminal domain CDA09_19405 PF00411 Ribosomal protein S11 CDA09_19410 PF00416 Ribosomal protein S13/S18 CDA09_19415 PF00444 Ribosomal protein L36 CDA09_19420 PF01176 Translation initiation factor 1A / IF-1 CDA09_19425 PF00344 SecY translocase CDA09_19430 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CDA09_19435 PF00327 Ribosomal protein L30p/L7e CDA09_19440 PF03719 Ribosomal protein S5, C-terminal domain CDA09_19440 PF00333 Ribosomal protein S5, N-terminal domain CDA09_19445 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CDA09_19450 PF00347 Ribosomal protein L6 CDA09_19455 PF00410 Ribosomal protein S8 CDA09_19460 PF00253 Ribosomal protein S14p/S29e CDA09_19465 PF00673 ribosomal L5P family C-terminus CDA09_19465 PF00281 Ribosomal protein L5 CDA09_19470 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CDA09_19475 PF00238 Ribosomal protein L14p/L23e CDA09_19480 PF00366 Ribosomal protein S17 CDA09_19485 PF00831 Ribosomal L29 protein CDA09_19490 PF00252 Ribosomal protein L16p/L10e CDA09_19495 PF07650 KH domain CDA09_19495 PF00189 Ribosomal protein S3, C-terminal domain CDA09_19500 PF00237 Ribosomal protein L22p/L17e CDA09_19505 PF00203 Ribosomal protein S19 CDA09_19510 PF03947 Ribosomal Proteins L2, C-terminal domain CDA09_19510 PF00181 Ribosomal Proteins L2, RNA binding domain CDA09_19515 PF00276 Ribosomal protein L23 CDA09_19520 PF00573 Ribosomal protein L4/L1 family CDA09_19525 PF00297 Ribosomal protein L3 CDA09_19530 PF00338 Ribosomal protein S10p/S20e CDA09_19535 PF00009 Elongation factor Tu GTP binding domain CDA09_19535 PF03144 Elongation factor Tu domain 2 CDA09_19535 PF03143 Elongation factor Tu C-terminal domain CDA09_19540 PF03144 Elongation factor Tu domain 2 CDA09_19540 PF00009 Elongation factor Tu GTP binding domain CDA09_19540 PF03764 Elongation factor G, domain IV CDA09_19540 PF14492 Elongation Factor G, domain II CDA09_19540 PF00679 Elongation factor G C-terminus CDA09_19545 PF00177 Ribosomal protein S7p/S5e CDA09_19550 PF00164 Ribosomal protein S12/S23 CDA09_19555 PF04997 RNA polymerase Rpb1, domain 1 CDA09_19555 PF00623 RNA polymerase Rpb1, domain 2 CDA09_19555 PF04983 RNA polymerase Rpb1, domain 3 CDA09_19555 PF05000 RNA polymerase Rpb1, domain 4 CDA09_19555 PF04998 RNA polymerase Rpb1, domain 5 CDA09_19560 PF04565 RNA polymerase Rpb2, domain 3 CDA09_19560 PF10385 RNA polymerase beta subunit external 1 domain CDA09_19560 PF00562 RNA polymerase Rpb2, domain 6 CDA09_19560 PF04563 RNA polymerase beta subunit CDA09_19560 PF04560 RNA polymerase Rpb2, domain 7 CDA09_19560 PF04561 RNA polymerase Rpb2, domain 2 CDA09_19565 PF16320 Ribosomal protein L7/L12 dimerisation domain CDA09_19565 PF00542 Ribosomal protein L7/L12 C-terminal domain CDA09_19570 PF00466 Ribosomal protein L10 CDA09_19575 PF00687 Ribosomal protein L1p/L10e family CDA09_19580 PF00298 Ribosomal protein L11, RNA binding domain CDA09_19580 PF03946 Ribosomal protein L11, N-terminal domain CDA09_19585 PF00467 KOW motif CDA09_19585 PF02357 Transcription termination factor nusG CDA09_19590 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CDA09_19600 PF03143 Elongation factor Tu C-terminal domain CDA09_19600 PF03144 Elongation factor Tu domain 2 CDA09_19600 PF00009 Elongation factor Tu GTP binding domain CDA09_19620 PF01565 FAD binding domain CDA09_19620 PF02913 FAD linked oxidases, C-terminal domain CDA09_19635 PF00196 Bacterial regulatory proteins, luxR family CDA09_19635 PF00072 Response regulator receiver domain CDA09_19645 PF00512 His Kinase A (phospho-acceptor) domain CDA09_19645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_19645 PF01627 Hpt domain CDA09_19645 PF00072 Response regulator receiver domain CDA09_19645 PF00672 HAMP domain CDA09_19660 PF02515 CoA-transferase family III CDA09_19675 PF02310 B12 binding domain CDA09_19675 PF04055 Radical SAM superfamily CDA09_19680 PF00438 S-adenosylmethionine synthetase, N-terminal domain CDA09_19680 PF02772 S-adenosylmethionine synthetase, central domain CDA09_19680 PF02773 S-adenosylmethionine synthetase, C-terminal domain CDA09_19690 PF01048 Phosphorylase superfamily CDA09_19700 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_19705 PF00005 ABC transporter CDA09_19715 PF00005 ABC transporter CDA09_19725 PF02653 Branched-chain amino acid transport system / permease component CDA09_19730 PF02653 Branched-chain amino acid transport system / permease component CDA09_19735 PF00005 ABC transporter CDA09_19735 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_19740 PF00501 AMP-binding enzyme CDA09_19755 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CDA09_19765 PF00196 Bacterial regulatory proteins, luxR family CDA09_19765 PF00072 Response regulator receiver domain CDA09_19770 PF07730 Histidine kinase CDA09_19770 PF17200 Single Cache domain 2 CDA09_19775 PF09335 SNARE associated Golgi protein CDA09_19780 PF00563 EAL domain CDA09_19780 PF03707 Bacterial signalling protein N terminal repeat CDA09_19780 PF00990 Diguanylate cyclase, GGDEF domain CDA09_19785 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDA09_19785 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDA09_19790 PF02310 B12 binding domain CDA09_19790 PF01642 Methylmalonyl-CoA mutase CDA09_19795 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDA09_19795 PF12833 Helix-turn-helix domain CDA09_19800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_19800 PF13426 PAS domain CDA09_19800 PF00072 Response regulator receiver domain CDA09_19805 PF00486 Transcriptional regulatory protein, C terminal CDA09_19805 PF00072 Response regulator receiver domain CDA09_19830 PF02705 K+ potassium transporter CDA09_19835 PF00486 Transcriptional regulatory protein, C terminal CDA09_19835 PF00072 Response regulator receiver domain CDA09_19840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_19840 PF13493 Domain of unknown function (DUF4118) CDA09_19840 PF13492 GAF domain CDA09_19840 PF02702 Osmosensitive K+ channel His kinase sensor domain CDA09_19840 PF00512 His Kinase A (phospho-acceptor) domain CDA09_19850 PF04228 Putative neutral zinc metallopeptidase CDA09_19860 PF07730 Histidine kinase CDA09_19860 PF17200 Single Cache domain 2 CDA09_19865 PF00072 Response regulator receiver domain CDA09_19865 PF00196 Bacterial regulatory proteins, luxR family CDA09_19875 PF02630 SCO1/SenC CDA09_19880 PF00196 Bacterial regulatory proteins, luxR family CDA09_19880 PF00072 Response regulator receiver domain CDA09_19885 PF13180 PDZ domain CDA09_19905 PF02785 Biotin carboxylase C-terminal domain CDA09_19905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDA09_19905 PF00289 Biotin carboxylase, N-terminal domain CDA09_19910 PF01039 Carboxyl transferase domain CDA09_19920 PF01642 Methylmalonyl-CoA mutase CDA09_19920 PF02310 B12 binding domain CDA09_19925 PF00392 Bacterial regulatory proteins, gntR family CDA09_19925 PF07729 FCD domain CDA09_19930 PF10415 Fumarase C C-terminus CDA09_19930 PF00206 Lyase CDA09_19945 PF00072 Response regulator receiver domain CDA09_19945 PF00196 Bacterial regulatory proteins, luxR family CDA09_19990 PF13629 Pilus formation protein N terminal region CDA09_19990 PF00263 Bacterial type II and III secretion system protein CDA09_19990 PF04972 BON domain CDA09_20020 PF00437 Type II/IV secretion system protein CDA09_20040 PF00474 Sodium:solute symporter family CDA09_20045 PF04341 Protein of unknown function, DUF485 CDA09_20050 PF00378 Enoyl-CoA hydratase/isomerase CDA09_20055 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDA09_20055 PF07685 CobB/CobQ-like glutamine amidotransferase domain CDA09_20060 PF03186 CobD/Cbib protein CDA09_20065 PF00155 Aminotransferase class I and II CDA09_20070 PF16199 Radical_SAM C-terminal domain CDA09_20070 PF04055 Radical SAM superfamily CDA09_20075 PF01497 Periplasmic binding protein CDA09_20085 PF00271 Helicase conserved C-terminal domain CDA09_20085 PF00270 DEAD/DEAH box helicase CDA09_20095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_20100 PF01903 CbiX CDA09_20105 PF02570 Precorrin-8X methylmutase CDA09_20110 PF01888 CbiD CDA09_20115 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_20120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_20140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_20140 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDA09_20145 PF07715 TonB-dependent Receptor Plug Domain CDA09_20145 PF00593 TonB dependent receptor CDA09_20155 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CDA09_20155 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CDA09_20160 PF00817 impB/mucB/samB family CDA09_20160 PF11799 impB/mucB/samB family C-terminal domain CDA09_20165 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDA09_20165 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDA09_20170 PF04183 IucA / IucC family CDA09_20170 PF06276 Ferric iron reductase FhuF-like transporter CDA09_20175 PF07690 Major Facilitator Superfamily CDA09_20195 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CDA09_20195 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CDA09_20200 PF03466 LysR substrate binding domain CDA09_20200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_20205 PF00106 short chain dehydrogenase CDA09_20210 PF01810 LysE type translocator CDA09_20225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDA09_20225 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDA09_20245 PF01292 Prokaryotic cytochrome b561 CDA09_20250 PF08534 Redoxin CDA09_20255 PF17991 Thioredoxin like C-terminal domain CDA09_20255 PF00578 AhpC/TSA family CDA09_20255 PF02683 Cytochrome C biogenesis protein transmembrane region CDA09_20260 PF01569 PAP2 superfamily CDA09_20265 PF01569 PAP2 superfamily CDA09_20285 PF01380 SIS domain CDA09_20290 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_20290 PF12804 MobA-like NTP transferase domain CDA09_20295 PF01515 Phosphate acetyl/butaryl transferase CDA09_20300 PF00871 Acetokinase family CDA09_20305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_20305 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDA09_20310 PF01493 GXGXG motif CDA09_20310 PF00310 Glutamine amidotransferases class-II CDA09_20310 PF04898 Glutamate synthase central domain CDA09_20310 PF01645 Conserved region in glutamate synthase CDA09_20315 PF13286 Phosphohydrolase-associated domain CDA09_20315 PF01966 HD domain CDA09_20320 PF01761 3-dehydroquinate synthase CDA09_20325 PF01202 Shikimate kinase CDA09_20355 PF17092 Penicillin-binding protein OB-like domain CDA09_20355 PF00912 Transglycosylase CDA09_20355 PF00905 Penicillin binding protein transpeptidase domain CDA09_20360 PF01491 Frataxin-like domain CDA09_20370 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDA09_20370 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDA09_20380 PF04321 RmlD substrate binding domain CDA09_20385 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CDA09_20390 PF00483 Nucleotidyl transferase CDA09_20395 PF16363 GDP-mannose 4,6 dehydratase CDA09_20400 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CDA09_20410 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CDA09_20415 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CDA09_20425 PF01040 UbiA prenyltransferase family CDA09_20430 PF04345 Chorismate lyase CDA09_20435 PF00270 DEAD/DEAH box helicase CDA09_20435 PF00271 Helicase conserved C-terminal domain CDA09_20435 PF17191 RecG wedge domain CDA09_20440 PF01042 Endoribonuclease L-PSP CDA09_20445 PF02623 FliW protein CDA09_20465 PF02678 Pirin CDA09_20465 PF05726 Pirin C-terminal cupin domain CDA09_20470 PF00881 Nitroreductase family CDA09_20475 PF00378 Enoyl-CoA hydratase/isomerase CDA09_20480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_20480 PF08521 Two-component sensor kinase N-terminal CDA09_20480 PF00512 His Kinase A (phospho-acceptor) domain CDA09_20485 PF00486 Transcriptional regulatory protein, C terminal CDA09_20485 PF00072 Response regulator receiver domain CDA09_20490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_20495 PF00873 AcrB/AcrD/AcrF family CDA09_20500 PF02321 Outer membrane efflux protein CDA09_20510 PF02803 Thiolase, C-terminal domain CDA09_20510 PF00108 Thiolase, N-terminal domain CDA09_20515 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_20515 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_20515 PF00378 Enoyl-CoA hydratase/isomerase CDA09_20520 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CDA09_20525 PF03061 Thioesterase superfamily CDA09_20530 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_20530 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_20530 PF00378 Enoyl-CoA hydratase/isomerase CDA09_20535 PF00108 Thiolase, N-terminal domain CDA09_20535 PF02803 Thiolase, C-terminal domain CDA09_20540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_20540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_20540 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_20540 PF09317 Domain of unknown function (DUF1974) CDA09_20545 PF09209 Tetracyclin repressor-like, C-terminal domain CDA09_20545 PF00440 Bacterial regulatory proteins, tetR family CDA09_20560 PF00005 ABC transporter CDA09_20560 PF06472 ABC transporter transmembrane region 2 CDA09_20570 PF16657 Maltogenic Amylase, C-terminal domain CDA09_20570 PF00128 Alpha amylase, catalytic domain CDA09_20575 PF02646 RmuC family CDA09_20580 PF00005 ABC transporter CDA09_20580 PF00664 ABC transporter transmembrane region CDA09_20585 PF00999 Sodium/hydrogen exchanger family CDA09_20585 PF02254 TrkA-N domain CDA09_20590 PF17763 Glutaminase/Asparaginase C-terminal domain CDA09_20590 PF00710 Asparaginase, N-terminal CDA09_20595 PF03466 LysR substrate binding domain CDA09_20595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_20600 PF01925 Sulfite exporter TauE/SafE CDA09_20615 PF01507 Phosphoadenosine phosphosulfate reductase family CDA09_20620 PF01507 Phosphoadenosine phosphosulfate reductase family CDA09_20625 PF00009 Elongation factor Tu GTP binding domain CDA09_20640 PF16200 C-terminal region of band_7 CDA09_20640 PF01145 SPFH domain / Band 7 family CDA09_20645 PF07724 AAA domain (Cdc48 subfamily) CDA09_20645 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_20645 PF10431 C-terminal, D2-small domain, of ClpB protein CDA09_20650 PF00227 Proteasome subunit CDA09_20660 PF03061 Thioesterase superfamily CDA09_20665 PF01618 MotA/TolQ/ExbB proton channel family CDA09_20670 PF02472 Biopolymer transport protein ExbD/TolR CDA09_20680 PF04052 TolB amino-terminal domain CDA09_20680 PF07676 WD40-like Beta Propeller Repeat CDA09_20685 PF00691 OmpA family CDA09_20695 PF04055 Radical SAM superfamily CDA09_20700 PF06508 Queuosine biosynthesis protein QueC CDA09_20705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_20705 PF00512 His Kinase A (phospho-acceptor) domain CDA09_20705 PF00989 PAS fold CDA09_20710 PF02954 Bacterial regulatory protein, Fis family CDA09_20710 PF00072 Response regulator receiver domain CDA09_20710 PF00158 Sigma-54 interaction domain CDA09_20780 PF13188 PAS domain CDA09_20780 PF00990 Diguanylate cyclase, GGDEF domain CDA09_20780 PF00563 EAL domain CDA09_20780 PF03707 Bacterial signalling protein N terminal repeat CDA09_20785 PF13193 AMP-binding enzyme C-terminal domain CDA09_20785 PF00501 AMP-binding enzyme CDA09_20790 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_20790 PF00005 ABC transporter CDA09_20795 PF00005 ABC transporter CDA09_20805 PF02653 Branched-chain amino acid transport system / permease component CDA09_20810 PF02653 Branched-chain amino acid transport system / permease component CDA09_20815 PF00586 AIR synthase related protein, N-terminal domain CDA09_20815 PF02769 AIR synthase related protein, C-terminal domain CDA09_20820 PF04608 Phosphatidylglycerophosphatase A CDA09_20825 PF02464 Competence-damaged protein CDA09_20830 PF00154 recA bacterial DNA recombination protein CDA09_20835 PF02631 RecX family CDA09_20840 PF00005 ABC transporter CDA09_20840 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_20845 PF04552 Sigma-54, DNA binding domain CDA09_20845 PF04963 Sigma-54 factor, core binding domain CDA09_20845 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDA09_20850 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CDA09_20855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDA09_20860 PF02603 HPr Serine kinase N terminus CDA09_20860 PF07475 HPr Serine kinase C-terminal domain CDA09_20865 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_20865 PF00585 C-terminal regulatory domain of Threonine dehydratase CDA09_20870 PF01812 5-formyltetrahydrofolate cyclo-ligase family CDA09_20875 PF01464 Transglycosylase SLT domain CDA09_20875 PF14718 Soluble lytic murein transglycosylase L domain CDA09_20880 PF01370 NAD dependent epimerase/dehydratase family CDA09_20890 PF01743 Poly A polymerase head domain CDA09_20890 PF01966 HD domain CDA09_20890 PF12627 Probable RNA and SrmB- binding site of polymerase A CDA09_20900 PF00561 alpha/beta hydrolase fold CDA09_20920 PF01171 PP-loop family CDA09_20930 PF09335 SNARE associated Golgi protein CDA09_20935 PF01042 Endoribonuclease L-PSP CDA09_20945 PF02146 Sir2 family CDA09_20950 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_20950 PF00384 Molybdopterin oxidoreductase CDA09_20950 PF01568 Molydopterin dinucleotide binding domain CDA09_20960 PF00156 Phosphoribosyl transferase domain CDA09_20965 PF03372 Endonuclease/Exonuclease/phosphatase family CDA09_20995 PF12792 CSS motif domain associated with EAL CDA09_20995 PF00563 EAL domain CDA09_21010 PF01494 FAD binding domain CDA09_21025 PF00271 Helicase conserved C-terminal domain CDA09_21025 PF00270 DEAD/DEAH box helicase CDA09_21025 PF18019 HD domain CDA09_21030 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) CDA09_21035 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) CDA09_21040 PF09344 CT1975-like protein CDA09_21045 PF09704 CRISPR-associated protein (Cas_Cas5) CDA09_21065 PF01867 CRISPR associated protein Cas1 CDA09_21070 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) CDA09_21085 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CDA09_21085 PF01565 FAD binding domain CDA09_21105 PF16658 Class II release factor RF3, C-terminal domain CDA09_21105 PF00009 Elongation factor Tu GTP binding domain CDA09_21105 PF03144 Elongation factor Tu domain 2 CDA09_21115 PF03741 Integral membrane protein TerC family CDA09_21135 PF07075 Protein of unknown function (DUF1343) CDA09_21145 PF14572 Phosphoribosyl synthetase-associated domain CDA09_21145 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDA09_21160 PF02607 B12 binding domain CDA09_21160 PF02574 Homocysteine S-methyltransferase CDA09_21160 PF02310 B12 binding domain CDA09_21160 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDA09_21160 PF00809 Pterin binding enzyme CDA09_21165 PF00561 alpha/beta hydrolase fold CDA09_21180 PF13458 Periplasmic binding protein CDA09_21185 PF13458 Periplasmic binding protein CDA09_21190 PF02653 Branched-chain amino acid transport system / permease component CDA09_21195 PF02653 Branched-chain amino acid transport system / permease component CDA09_21195 PF11862 Domain of unknown function (DUF3382) CDA09_21200 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_21200 PF00005 ABC transporter CDA09_21205 PF00005 ABC transporter CDA09_21215 PF07690 Major Facilitator Superfamily CDA09_21220 PF13335 Magnesium chelatase, subunit ChlI C-terminal CDA09_21220 PF01078 Magnesium chelatase, subunit ChlI CDA09_21235 PF00543 Nitrogen regulatory protein P-II CDA09_21240 PF00909 Ammonium Transporter Family CDA09_21245 PF00551 Formyl transferase CDA09_21255 PF13291 ACT domain CDA09_21255 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_21260 PF00005 ABC transporter CDA09_21260 PF12848 ABC transporter CDA09_21275 PF02424 ApbE family CDA09_21280 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CDA09_21280 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CDA09_21290 PF07669 Eco57I restriction-modification methylase CDA09_21290 PF12950 TaqI-like C-terminal specificity domain CDA09_21310 PF03755 YicC-like family, N-terminal region CDA09_21310 PF08340 Domain of unknown function (DUF1732) CDA09_21315 PF03793 PASTA domain CDA09_21315 PF00069 Protein kinase domain CDA09_21325 PF03725 3' exoribonuclease family, domain 2 CDA09_21325 PF01138 3' exoribonuclease family, domain 1 CDA09_21330 PF01725 Ham1 family CDA09_21335 PF06969 HemN C-terminal domain CDA09_21335 PF04055 Radical SAM superfamily CDA09_21340 PF01343 Peptidase family S49 CDA09_21345 PF02390 Putative methyltransferase CDA09_21350 PF05690 Thiazole biosynthesis protein ThiG CDA09_21355 PF05690 Thiazole biosynthesis protein ThiG CDA09_21355 PF02597 ThiS family CDA09_21365 PF13356 Arm DNA-binding domain CDA09_21365 PF00589 Phage integrase family CDA09_21375 PF01381 Helix-turn-helix CDA09_21380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_21380 PF03466 LysR substrate binding domain CDA09_21400 PF05717 IS66 Orf2 like protein CDA09_21405 PF13817 IS66 C-terminal element CDA09_21405 PF03050 Transposase IS66 family CDA09_21405 PF13007 Transposase C of IS166 homeodomain CDA09_21405 PF13005 zinc-finger binding domain of transposase IS66 CDA09_21410 PF07929 Plasmid pRiA4b ORF-3-like protein CDA09_21415 PF00561 alpha/beta hydrolase fold CDA09_21430 PF07836 DmpG-like communication domain CDA09_21430 PF00682 HMGL-like CDA09_21435 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CDA09_21435 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDA09_21440 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_21445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_21450 PF00106 short chain dehydrogenase CDA09_21460 PF00355 Rieske [2Fe-2S] domain CDA09_21465 PF06139 BphX-like CDA09_21470 PF00866 Ring hydroxylating beta subunit CDA09_21475 PF00355 Rieske [2Fe-2S] domain CDA09_21475 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDA09_21480 PF00392 Bacterial regulatory proteins, gntR family CDA09_21480 PF07729 FCD domain CDA09_21505 PF01638 HxlR-like helix-turn-helix CDA09_21525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_21535 PF00005 ABC transporter CDA09_21540 PF00005 ABC transporter CDA09_21545 PF13533 Biotin-lipoyl like CDA09_21555 PF00873 AcrB/AcrD/AcrF family CDA09_21560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_21565 PF04101 Glycosyltransferase family 28 C-terminal domain CDA09_21565 PF03033 Glycosyltransferase family 28 N-terminal domain CDA09_21575 PF01734 Patatin-like phospholipase CDA09_21580 PF03109 ABC1 family CDA09_21620 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system CDA09_21655 PF04002 RadC-like JAB domain CDA09_21720 PF07690 Major Facilitator Superfamily CDA09_21730 PF00378 Enoyl-CoA hydratase/isomerase CDA09_21740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_21740 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_21740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_21745 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CDA09_21745 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CDA09_21750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_21750 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_21750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_21755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_21760 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CDA09_21760 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CDA09_21760 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CDA09_21765 PF00037 4Fe-4S binding domain CDA09_21775 PF00378 Enoyl-CoA hydratase/isomerase CDA09_21780 PF00378 Enoyl-CoA hydratase/isomerase CDA09_21785 PF00107 Zinc-binding dehydrogenase CDA09_21785 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_21790 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_21790 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_21795 PF00378 Enoyl-CoA hydratase/isomerase CDA09_21800 PF02803 Thiolase, C-terminal domain CDA09_21800 PF00108 Thiolase, N-terminal domain CDA09_21810 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_21815 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_21825 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_21830 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_21840 PF02653 Branched-chain amino acid transport system / permease component CDA09_21850 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_21850 PF00005 ABC transporter CDA09_21855 PF00005 ABC transporter CDA09_21860 PF13193 AMP-binding enzyme C-terminal domain CDA09_21860 PF00501 AMP-binding enzyme CDA09_21865 PF00440 Bacterial regulatory proteins, tetR family CDA09_21870 PF00196 Bacterial regulatory proteins, luxR family CDA09_21870 PF00072 Response regulator receiver domain CDA09_21875 PF13426 PAS domain CDA09_21875 PF13188 PAS domain CDA09_21875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_21880 PF04055 Radical SAM superfamily CDA09_21885 PF08201 BssC/TutF protein CDA09_21890 PF01228 Glycine radical CDA09_21890 PF02901 Pyruvate formate lyase-like CDA09_21895 PF18512 Benzylsuccinate synthase beta subunit CDA09_21900 PF08406 CbbQ/NirQ/NorQ C-terminal CDA09_21900 PF07728 AAA domain (dynein-related subfamily) CDA09_21940 PF07969 Amidohydrolase family CDA09_21945 PF00072 Response regulator receiver domain CDA09_21945 PF13426 PAS domain CDA09_21945 PF08448 PAS fold CDA09_21945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_21945 PF00512 His Kinase A (phospho-acceptor) domain CDA09_21950 PF01161 Phosphatidylethanolamine-binding protein CDA09_21955 PF00378 Enoyl-CoA hydratase/isomerase CDA09_21960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_21960 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_21960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_21970 PF02515 CoA-transferase family III CDA09_21975 PF02515 CoA-transferase family III CDA09_22075 PF00216 Bacterial DNA-binding protein CDA09_22105 PF00899 ThiF family CDA09_22105 PF14461 Prokaryotic E2 family B CDA09_22115 PF06067 Domain of unknown function (DUF932) CDA09_22130 PF00816 H-NS histone family CDA09_22155 PF01131 DNA topoisomerase CDA09_22155 PF01751 Toprim domain CDA09_22200 PF13614 AAA domain CDA09_22220 PF00080 Copper/zinc superoxide dismutase (SODC) CDA09_22225 PF01613 Flavin reductase like domain CDA09_22230 PF10576 Iron-sulfur binding domain of endonuclease III CDA09_22230 PF00633 Helix-hairpin-helix motif CDA09_22230 PF14815 NUDIX domain CDA09_22230 PF00730 HhH-GPD superfamily base excision DNA repair protein CDA09_22240 PF02441 Flavoprotein CDA09_22250 PF11862 Domain of unknown function (DUF3382) CDA09_22250 PF02653 Branched-chain amino acid transport system / permease component CDA09_22255 PF02653 Branched-chain amino acid transport system / permease component CDA09_22260 PF03458 UPF0126 domain CDA09_22265 PF01741 Large-conductance mechanosensitive channel, MscL CDA09_22270 PF00753 Metallo-beta-lactamase superfamily CDA09_22275 PF03459 TOBE domain CDA09_22275 PF00005 ABC transporter CDA09_22280 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_22290 PF03459 TOBE domain CDA09_22290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_22295 PF03459 TOBE domain CDA09_22295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_22305 PF03707 Bacterial signalling protein N terminal repeat CDA09_22305 PF00563 EAL domain CDA09_22305 PF00990 Diguanylate cyclase, GGDEF domain CDA09_22335 PF00535 Glycosyl transferase family 2 CDA09_22340 PF01522 Polysaccharide deacetylase CDA09_22340 PF14883 Hypothetical glycosyl hydrolase family 13 CDA09_22440 PF13473 Cupredoxin-like domain CDA09_22445 PF03239 Iron permease FTR1 family CDA09_22460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_22460 PF00037 4Fe-4S binding domain CDA09_22460 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDA09_22460 PF01568 Molydopterin dinucleotide binding domain CDA09_22460 PF00384 Molybdopterin oxidoreductase CDA09_22465 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDA09_22465 PF10531 SLBB domain CDA09_22465 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDA09_22470 PF03466 LysR substrate binding domain CDA09_22470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_22475 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CDA09_22475 PF01676 Metalloenzyme superfamily CDA09_22480 PF08212 Lipocalin-like domain CDA09_22500 PF01047 MarR family CDA09_22505 PF02321 Outer membrane efflux protein CDA09_22510 PF00529 HlyD membrane-fusion protein of T1SS CDA09_22510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_22515 PF07690 Major Facilitator Superfamily CDA09_22525 PF00072 Response regulator receiver domain CDA09_22525 PF00196 Bacterial regulatory proteins, luxR family CDA09_22530 PF17200 Single Cache domain 2 CDA09_22530 PF07730 Histidine kinase CDA09_22535 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CDA09_22550 PF08681 Protein of unknown function (DUF1778) CDA09_22580 PF08378 Nuclease-related domain CDA09_22585 PF13977 BetI-type transcriptional repressor, C-terminal CDA09_22585 PF00440 Bacterial regulatory proteins, tetR family CDA09_22590 PF00378 Enoyl-CoA hydratase/isomerase CDA09_22595 PF00378 Enoyl-CoA hydratase/isomerase CDA09_22605 PF00501 AMP-binding enzyme CDA09_22605 PF13193 AMP-binding enzyme C-terminal domain CDA09_22615 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDA09_22625 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_22625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_22625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_22630 PF00106 short chain dehydrogenase CDA09_22640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_22640 PF03466 LysR substrate binding domain CDA09_22645 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_22650 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_22655 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_22660 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_22665 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_22665 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_22665 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CDA09_22670 PF00301 Rubredoxin CDA09_22675 PF00378 Enoyl-CoA hydratase/isomerase CDA09_22690 PF00005 ABC transporter CDA09_22695 PF00005 ABC transporter CDA09_22695 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_22705 PF02653 Branched-chain amino acid transport system / permease component CDA09_22715 PF00501 AMP-binding enzyme CDA09_22715 PF13193 AMP-binding enzyme C-terminal domain CDA09_22730 PF01202 Shikimate kinase CDA09_22750 PF00108 Thiolase, N-terminal domain CDA09_22750 PF02803 Thiolase, C-terminal domain CDA09_22755 PF00672 HAMP domain CDA09_22755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_22755 PF17200 Single Cache domain 2 CDA09_22770 PF10442 FIST C domain CDA09_22770 PF08495 FIST N domain CDA09_22790 PF00005 ABC transporter CDA09_22790 PF12848 ABC transporter CDA09_22795 PF03610 PTS system fructose IIA component CDA09_22800 PF00381 PTS HPr component phosphorylation site CDA09_22805 PF05524 PEP-utilising enzyme, N-terminal CDA09_22805 PF00391 PEP-utilising enzyme, mobile domain CDA09_22805 PF02896 PEP-utilising enzyme, TIM barrel domain CDA09_22810 PF00561 alpha/beta hydrolase fold CDA09_22825 PF07690 Major Facilitator Superfamily CDA09_22840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_22840 PF17200 Single Cache domain 2 CDA09_22840 PF00672 HAMP domain CDA09_22845 PF00106 short chain dehydrogenase CDA09_22855 PF03475 3-alpha domain CDA09_22855 PF03473 MOSC domain CDA09_22880 PF00586 AIR synthase related protein, N-terminal domain CDA09_22880 PF02769 AIR synthase related protein, C-terminal domain CDA09_22885 PF01924 Hydrogenase formation hypA family CDA09_22890 PF01455 HupF/HypC family CDA09_22895 PF00708 Acylphosphatase CDA09_22895 PF01300 Telomere recombination CDA09_22895 PF07503 HypF finger CDA09_22895 PF17788 HypF Kae1-like domain CDA09_22900 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDA09_22905 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CDA09_22915 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CDA09_22915 PF00270 DEAD/DEAH box helicase CDA09_22915 PF18074 Primosomal protein N C-terminal domain CDA09_22915 PF00271 Helicase conserved C-terminal domain CDA09_22915 PF17764 3′ DNA-binding domain (3′BD) CDA09_22920 PF01208 Uroporphyrinogen decarboxylase (URO-D) CDA09_22925 PF04955 HupE / UreJ protein CDA09_22935 PF01730 UreF CDA09_22940 PF05194 UreE urease accessory protein, C-terminal domain CDA09_22940 PF02814 UreE urease accessory protein, N-terminal domain CDA09_22945 PF00449 Urease alpha-subunit, N-terminal domain CDA09_22945 PF01979 Amidohydrolase family CDA09_22950 PF00699 Urease beta subunit CDA09_22955 PF00547 Urease, gamma subunit CDA09_22960 PF01774 UreD urease accessory protein CDA09_22965 PF00005 ABC transporter CDA09_22970 PF00005 ABC transporter CDA09_22970 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_22980 PF02653 Branched-chain amino acid transport system / permease component CDA09_22990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_22990 PF00672 HAMP domain CDA09_22995 PF00072 Response regulator receiver domain CDA09_22995 PF00158 Sigma-54 interaction domain CDA09_22995 PF02954 Bacterial regulatory protein, Fis family CDA09_23000 PF00672 HAMP domain CDA09_23000 PF00989 PAS fold CDA09_23000 PF00512 His Kinase A (phospho-acceptor) domain CDA09_23000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_23010 PF01189 16S rRNA methyltransferase RsmB/F CDA09_23010 PF01029 NusB family CDA09_23015 PF17284 Spermidine synthase tetramerisation domain CDA09_23020 PF10396 GTP-binding protein TrmE N-terminus CDA09_23020 PF01926 50S ribosome-binding GTPase CDA09_23020 PF12631 MnmE helical domain CDA09_23025 PF14849 YidC periplasmic domain CDA09_23025 PF02096 60Kd inner membrane protein CDA09_23030 PF01809 Putative membrane protein insertion efficiency factor CDA09_23035 PF00825 Ribonuclease P CDA09_23075 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) CDA09_23085 PF00665 Integrase core domain CDA09_23085 PF13333 Integrase core domain CDA09_23085 PF13276 HTH-like domain CDA09_23105 PF07977 FabA-like domain