locus-tag class description D3093_00040 PF10415 Fumarase C C-terminus D3093_00040 PF00206 Lyase D3093_00060 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D3093_00060 PF02222 ATP-grasp domain D3093_00065 PF00731 AIR carboxylase D3093_00075 PF00365 Phosphofructokinase D3093_00085 PF13302 Acetyltransferase (GNAT) domain D3093_00100 PF07559 Flagellar basal body protein FlaE D3093_00100 PF00460 Flagella basal body rod protein D3093_00100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3093_00105 PF00484 Carbonic anhydrase D3093_00110 PF02441 Flavoprotein D3093_00120 PF00698 Acyl transferase domain D3093_00120 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_00120 PF14765 Polyketide synthase dehydratase D3093_00120 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_00120 PF08240 Alcohol dehydrogenase GroES-like domain D3093_00120 PF16197 Ketoacyl-synthetase C-terminal extension D3093_00120 PF08659 KR domain D3093_00120 PF00550 Phosphopantetheine attachment site D3093_00145 PF04380 Membrane fusogenic activity D3093_00155 PF03807 NADP oxidoreductase coenzyme F420-dependent D3093_00155 PF14748 Pyrroline-5-carboxylate reductase dimerisation D3093_00165 PF13193 AMP-binding enzyme C-terminal domain D3093_00165 PF00501 AMP-binding enzyme D3093_00175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_00175 PF00672 HAMP domain D3093_00195 PF08331 Domain of unknown function (DUF1730) D3093_00200 PF14489 QueF-like protein D3093_00205 PF01702 Queuine tRNA-ribosyltransferase D3093_00210 PF02547 Queuosine biosynthesis protein D3093_00215 PF03109 ABC1 family D3093_00220 PF00672 HAMP domain D3093_00220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_00225 PF01565 FAD binding domain D3093_00225 PF08031 Berberine and berberine like D3093_00250 PF00501 AMP-binding enzyme D3093_00250 PF13193 AMP-binding enzyme C-terminal domain D3093_00250 PF16177 Acetyl-coenzyme A synthetase N-terminus D3093_00260 PF00581 Rhodanese-like domain D3093_00270 PF08281 Sigma-70, region 4 D3093_00270 PF04542 Sigma-70 region 2 D3093_00280 PF00486 Transcriptional regulatory protein, C terminal D3093_00280 PF00931 NB-ARC domain D3093_00280 PF03704 Bacterial transcriptional activator domain D3093_00310 PF00072 Response regulator receiver domain D3093_00330 PF00117 Glutamine amidotransferase class-I D3093_00330 PF04715 Anthranilate synthase component I, N terminal region D3093_00330 PF00425 chorismate binding enzyme D3093_00335 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) D3093_00340 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D3093_00340 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D3093_00345 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D3093_00350 PF02233 NAD(P) transhydrogenase beta subunit D3093_00360 PF02548 Ketopantoate hydroxymethyltransferase D3093_00365 PF01165 Ribosomal protein S21 D3093_00370 PF01327 Polypeptide deformylase D3093_00380 PF04994 TfoX C-terminal domain D3093_00380 PF04993 TfoX N-terminal domain D3093_00395 PF02511 Thymidylate synthase complementing protein D3093_00420 PF02653 Branched-chain amino acid transport system / permease component D3093_00425 PF00005 ABC transporter D3093_00435 PF10609 NUBPL iron-transfer P-loop NTPase D3093_00435 PF01883 Iron-sulfur cluster assembly protein D3093_00440 PF01145 SPFH domain / Band 7 family D3093_00440 PF12221 Bacterial membrane protein N terminal D3093_00445 PF01145 SPFH domain / Band 7 family D3093_00455 PF13180 PDZ domain D3093_00475 PF00155 Aminotransferase class I and II D3093_00480 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3093_00480 PF00205 Thiamine pyrophosphate enzyme, central domain D3093_00480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3093_00485 PF10369 Small subunit of acetolactate synthase D3093_00490 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D3093_00490 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D3093_00495 PF01895 PhoU domain D3093_00500 PF03350 Uncharacterized protein family, UPF0114 D3093_00510 PF04085 rod shape-determining protein MreC D3093_00520 PF03717 Penicillin-binding Protein dimerisation domain D3093_00520 PF00905 Penicillin binding protein transpeptidase domain D3093_00525 PF02743 Cache domain D3093_00525 PF00672 HAMP domain D3093_00525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_00560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D3093_00565 PF01048 Phosphorylase superfamily D3093_00570 PF01791 DeoC/LacD family aldolase D3093_00575 PF00591 Glycosyl transferase family, a/b domain D3093_00575 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain D3093_00575 PF02885 Glycosyl transferase family, helical bundle domain D3093_00585 PF00892 EamA-like transporter family D3093_00605 PF00005 ABC transporter D3093_00605 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_00610 PF00005 ABC transporter D3093_00620 PF00654 Voltage gated chloride channel D3093_00625 PF03976 Polyphosphate kinase 2 (PPK2) D3093_00630 PF03976 Polyphosphate kinase 2 (PPK2) D3093_00635 PF11896 Domain of unknown function (DUF3416) D3093_00635 PF00128 Alpha amylase, catalytic domain D3093_00645 PF00563 EAL domain D3093_00645 PF01590 GAF domain D3093_00645 PF00990 Diguanylate cyclase, GGDEF domain D3093_00645 PF00989 PAS fold D3093_00650 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3093_00650 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D3093_00655 PF02586 SOS response associated peptidase (SRAP) D3093_00665 PF00072 Response regulator receiver domain D3093_00670 PF04226 Transglycosylase associated protein D3093_00675 PF00834 Ribulose-phosphate 3 epimerase family D3093_00680 PF03459 TOBE domain D3093_00680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_00685 PF00107 Zinc-binding dehydrogenase D3093_00685 PF08240 Alcohol dehydrogenase GroES-like domain D3093_00690 PF01638 HxlR-like helix-turn-helix D3093_00705 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3093_00705 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3093_00715 PF00291 Pyridoxal-phosphate dependent enzyme D3093_00725 PF13419 Haloacid dehalogenase-like hydrolase D3093_00740 PF00994 Probable molybdopterin binding domain D3093_00745 PF12801 4Fe-4S binding domain D3093_00745 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase D3093_00745 PF13746 4Fe-4S dicluster domain D3093_00750 PF04304 Protein of unknown function (DUF454) D3093_00755 PF09335 SNARE associated Golgi protein D3093_00760 PF00512 His Kinase A (phospho-acceptor) domain D3093_00760 PF00989 PAS fold D3093_00760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_00765 PF00224 Pyruvate kinase, barrel domain D3093_00765 PF02887 Pyruvate kinase, alpha/beta domain D3093_00770 PF00416 Ribosomal protein S13/S18 D3093_00775 PF00411 Ribosomal protein S11 D3093_00780 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D3093_00780 PF01000 RNA polymerase Rpb3/RpoA insert domain D3093_00780 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D3093_00785 PF01196 Ribosomal protein L17 D3093_00790 PF09335 SNARE associated Golgi protein D3093_00805 PF00004 ATPase family associated with various cellular activities (AAA) D3093_00805 PF16193 AAA C-terminal domain D3093_00805 PF12002 MgsA AAA+ ATPase C terminal D3093_00820 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D3093_00825 PF00849 RNA pseudouridylate synthase D3093_00825 PF01479 S4 domain D3093_00830 PF00392 Bacterial regulatory proteins, gntR family D3093_00830 PF07729 FCD domain D3093_00835 PF03594 Benzoate membrane transport protein D3093_00840 PF13419 Haloacid dehalogenase-like hydrolase D3093_00865 PF14760 Rnk N-terminus D3093_00865 PF01272 Transcription elongation factor, GreA/GreB, C-term D3093_00870 PF00005 ABC transporter D3093_00885 PF02608 ABC transporter substrate-binding protein PnrA-like D3093_00910 PF00990 Diguanylate cyclase, GGDEF domain D3093_00910 PF00072 Response regulator receiver domain D3093_00920 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D3093_00920 PF00753 Metallo-beta-lactamase superfamily D3093_00920 PF10996 Beta-Casp domain D3093_00930 PF03707 Bacterial signalling protein N terminal repeat D3093_00930 PF00990 Diguanylate cyclase, GGDEF domain D3093_00930 PF00563 EAL domain D3093_00935 PF00106 short chain dehydrogenase D3093_00940 PF12867 DinB superfamily D3093_00940 PF03781 Sulfatase-modifying factor enzyme 1 D3093_00945 PF10017 Histidine-specific methyltransferase, SAM-dependent D3093_00955 PF00809 Pterin binding enzyme D3093_00960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3093_00960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3093_00960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3093_00960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3093_00965 PF08543 Phosphomethylpyrimidine kinase D3093_00970 PF00155 Aminotransferase class I and II D3093_00970 PF00392 Bacterial regulatory proteins, gntR family D3093_00985 PF01027 Inhibitor of apoptosis-promoting Bax1 D3093_01000 PF02567 Phenazine biosynthesis-like protein D3093_01005 PF01575 MaoC like domain D3093_01005 PF00171 Aldehyde dehydrogenase family D3093_01010 PF00012 Hsp70 protein D3093_01015 PF00120 Glutamine synthetase, catalytic domain D3093_01015 PF03951 Glutamine synthetase, beta-Grasp domain D3093_01020 PF00543 Nitrogen regulatory protein P-II D3093_01035 PF01256 Carbohydrate kinase D3093_01035 PF03853 YjeF-related protein N-terminus D3093_01050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D3093_01050 PF05698 Bacterial trigger factor protein (TF) C-terminus D3093_01050 PF05697 Bacterial trigger factor protein (TF) D3093_01055 PF00574 Clp protease D3093_01060 PF10431 C-terminal, D2-small domain, of ClpB protein D3093_01060 PF06689 ClpX C4-type zinc finger D3093_01060 PF07724 AAA domain (Cdc48 subfamily) D3093_01070 PF02190 ATP-dependent protease La (LON) substrate-binding domain D3093_01070 PF00004 ATPase family associated with various cellular activities (AAA) D3093_01070 PF05362 Lon protease (S16) C-terminal proteolytic domain D3093_01075 PF00216 Bacterial DNA-binding protein D3093_01090 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D3093_01095 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D3093_01100 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D3093_01105 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D3093_01115 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D3093_01115 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D3093_01115 PF10531 SLBB domain D3093_01120 PF00384 Molybdopterin oxidoreductase D3093_01120 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D3093_01120 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal D3093_01125 PF00146 NADH dehydrogenase D3093_01130 PF12838 4Fe-4S dicluster domain D3093_01135 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 D3093_01140 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D3093_01145 PF00361 Proton-conducting membrane transporter D3093_01145 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D3093_01150 PF00361 Proton-conducting membrane transporter D3093_01150 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus D3093_01155 PF00361 Proton-conducting membrane transporter D3093_01160 PF03099 Biotin/lipoate A/B protein ligase family D3093_01160 PF02237 Biotin protein ligase C terminal domain D3093_01165 PF03309 Type III pantothenate kinase D3093_01170 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D3093_01170 PF12706 Beta-lactamase superfamily domain D3093_01170 PF17770 Ribonuclease J C-terminal domain D3093_01185 PF03352 Methyladenine glycosylase D3093_01185 PF13302 Acetyltransferase (GNAT) domain D3093_01185 PF13673 Acetyltransferase (GNAT) domain D3093_01185 PF00958 GMP synthase C terminal domain D3093_01185 PF00117 Glutamine amidotransferase class-I D3093_01200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3093_01200 PF03129 Anticodon binding domain D3093_01205 PF12704 MacB-like periplasmic core domain D3093_01205 PF02687 FtsX-like permease family D3093_01210 PF00005 ABC transporter D3093_01215 PF01738 Dienelactone hydrolase family D3093_01220 PF00892 EamA-like transporter family D3093_01245 PF00318 Ribosomal protein S2 D3093_01250 PF00889 Elongation factor TS D3093_01255 PF00696 Amino acid kinase family D3093_01260 PF01765 Ribosome recycling factor D3093_01265 PF01255 Putative undecaprenyl diphosphate synthase D3093_01275 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D3093_01275 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D3093_01275 PF13288 DXP reductoisomerase C-terminal domain D3093_01280 PF17820 PDZ domain D3093_01280 PF02163 Peptidase family M50 D3093_01285 PF01103 Surface antigen D3093_01285 PF07244 Surface antigen variable number repeat D3093_01295 PF07977 FabA-like domain D3093_01300 PF00132 Bacterial transferase hexapeptide (six repeats) D3093_01300 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D3093_01305 PF06230 LpxI C-terminal domain D3093_01305 PF17930 LpxI N-terminal domain D3093_01310 PF02684 Lipid-A-disaccharide synthetase D3093_01315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3093_01325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_01325 PF03466 LysR substrate binding domain D3093_01330 PF13417 Glutathione S-transferase, N-terminal domain D3093_01340 PF00285 Citrate synthase, C-terminal domain D3093_01345 PF00749 tRNA synthetases class I (E and Q), catalytic domain D3093_01350 PF00753 Metallo-beta-lactamase superfamily D3093_01350 PF03772 Competence protein D3093_01355 PF00717 Peptidase S24-like D3093_01355 PF01726 LexA DNA binding domain D3093_01360 PF03453 MoeA N-terminal region (domain I and II) D3093_01360 PF03454 MoeA C-terminal region (domain IV) D3093_01360 PF00994 Probable molybdopterin binding domain D3093_01365 PF01967 MoaC family D3093_01370 PF00583 Acetyltransferase (GNAT) family D3093_01375 PF00218 Indole-3-glycerol phosphate synthase D3093_01380 PF00591 Glycosyl transferase family, a/b domain D3093_01380 PF02885 Glycosyl transferase family, helical bundle domain D3093_01385 PF00117 Glutamine amidotransferase class-I D3093_01410 PF00425 chorismate binding enzyme D3093_01410 PF04715 Anthranilate synthase component I, N terminal region D3093_01420 PF00121 Triosephosphate isomerase D3093_01425 PF03840 Preprotein translocase SecG subunit D3093_01430 PF06418 CTP synthase N-terminus D3093_01430 PF00117 Glutamine amidotransferase class-I D3093_01435 PF01738 Dienelactone hydrolase family D3093_01440 PF00793 DAHP synthetase I family D3093_01450 PF04055 Radical SAM superfamily D3093_01450 PF13186 Iron-sulfur cluster-binding domain D3093_01455 PF05402 Coenzyme PQQ synthesis protein D (PqqD) D3093_01460 PF03070 TENA/THI-4/PQQC family D3093_01465 PF12706 Beta-lactamase superfamily domain D3093_01475 PF03952 Enolase, N-terminal domain D3093_01475 PF00113 Enolase, C-terminal TIM barrel domain D3093_01485 PF01171 PP-loop family D3093_01490 PF17862 AAA+ lid domain D3093_01490 PF00004 ATPase family associated with various cellular activities (AAA) D3093_01490 PF06480 FtsH Extracellular D3093_01490 PF01434 Peptidase family M41 D3093_01505 PF08534 Redoxin D3093_01510 PF00221 Aromatic amino acid lyase D3093_01515 PF00664 ABC transporter transmembrane region D3093_01515 PF00005 ABC transporter D3093_01520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3093_01520 PF00529 HlyD membrane-fusion protein of T1SS D3093_01525 PF00072 Response regulator receiver domain D3093_01525 PF00196 Bacterial regulatory proteins, luxR family D3093_01540 PF12697 Alpha/beta hydrolase family D3093_01545 PF03023 Lipid II flippase MurJ D3093_01555 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D3093_01560 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) D3093_01565 PF00291 Pyridoxal-phosphate dependent enzyme D3093_01585 PF00005 ABC transporter D3093_01590 PF00528 Binding-protein-dependent transport system inner membrane component D3093_01600 PF03960 ArsC family D3093_01605 PF08448 PAS fold D3093_01605 PF00512 His Kinase A (phospho-acceptor) domain D3093_01605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_01605 PF00072 Response regulator receiver domain D3093_01605 PF13188 PAS domain D3093_01610 PF00072 Response regulator receiver domain D3093_01615 PF08448 PAS fold D3093_01615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_01615 PF00512 His Kinase A (phospho-acceptor) domain D3093_01615 PF13188 PAS domain D3093_01615 PF00072 Response regulator receiver domain D3093_01620 PF00072 Response regulator receiver domain D3093_01620 PF00486 Transcriptional regulatory protein, C terminal D3093_01655 PF08447 PAS fold D3093_01655 PF08448 PAS fold D3093_01655 PF05231 MASE1 D3093_01655 PF13426 PAS domain D3093_01655 PF00563 EAL domain D3093_01655 PF00990 Diguanylate cyclase, GGDEF domain D3093_01670 PF03091 CutA1 divalent ion tolerance protein D3093_01690 PF00378 Enoyl-CoA hydratase/isomerase D3093_01700 PF00572 Ribosomal protein L13 D3093_01705 PF00380 Ribosomal protein S9/S16 D3093_01710 PF01118 Semialdehyde dehydrogenase, NAD binding domain D3093_01710 PF02774 Semialdehyde dehydrogenase, dimerisation domain D3093_01715 PF00132 Bacterial transferase hexapeptide (six repeats) D3093_01720 PF00691 OmpA family D3093_01725 PF00561 alpha/beta hydrolase fold D3093_01725 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus D3093_01735 PF01047 MarR family D3093_01740 PF07690 Major Facilitator Superfamily D3093_01745 PF00155 Aminotransferase class I and II D3093_01750 PF03447 Homoserine dehydrogenase, NAD binding domain D3093_01750 PF00742 Homoserine dehydrogenase D3093_01750 PF01842 ACT domain D3093_01755 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D3093_01760 PF00465 Iron-containing alcohol dehydrogenase D3093_01790 PF10141 Single-strand DNA-specific exonuclease, C terminal domain D3093_01790 PF01368 DHH family D3093_01790 PF02272 DHHA1 domain D3093_01790 PF17768 RecJ OB domain D3093_01800 PF00248 Aldo/keto reductase family D3093_01810 PF07690 Major Facilitator Superfamily D3093_01815 PF00850 Histone deacetylase domain D3093_01825 PF02558 Ketopantoate reductase PanE/ApbA D3093_01825 PF08546 Ketopantoate reductase PanE/ApbA C terminal D3093_01830 PF00571 CBS domain D3093_01835 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D3093_01835 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D3093_01840 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D3093_01845 PF02233 NAD(P) transhydrogenase beta subunit D3093_01850 PF00571 CBS domain D3093_01855 PF07729 FCD domain D3093_01855 PF00392 Bacterial regulatory proteins, gntR family D3093_01860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3093_01860 PF00205 Thiamine pyrophosphate enzyme, central domain D3093_01860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3093_01865 PF02515 CoA-transferase family III D3093_01870 PF00549 CoA-ligase D3093_01870 PF08442 ATP-grasp domain D3093_01875 PF02629 CoA binding domain D3093_01875 PF00549 CoA-ligase D3093_01880 PF07690 Major Facilitator Superfamily D3093_01890 PF01964 Radical SAM ThiC family D3093_01890 PF13667 ThiC-associated domain D3093_01895 PF07690 Major Facilitator Superfamily D3093_01900 PF13660 Domain of unknown function (DUF4147) D3093_01900 PF05161 MOFRL family D3093_01905 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3093_01905 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3093_01910 PF01261 Xylose isomerase-like TIM barrel D3093_01915 PF00205 Thiamine pyrophosphate enzyme, central domain D3093_01915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3093_01915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3093_01920 PF02110 Hydroxyethylthiazole kinase family D3093_01920 PF02581 Thiamine monophosphate synthase D3093_01925 PF07729 FCD domain D3093_01925 PF00392 Bacterial regulatory proteins, gntR family D3093_01930 PF02887 Pyruvate kinase, alpha/beta domain D3093_01930 PF00224 Pyruvate kinase, barrel domain D3093_01940 PF02896 PEP-utilising enzyme, TIM barrel domain D3093_01940 PF00391 PEP-utilising enzyme, mobile domain D3093_01940 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D3093_01955 PF00132 Bacterial transferase hexapeptide (six repeats) D3093_01965 PF00158 Sigma-54 interaction domain D3093_01965 PF18024 Helix-turn-helix domain D3093_01970 PF01266 FAD dependent oxidoreductase D3093_01980 PF01965 DJ-1/PfpI family D3093_01985 PF00196 Bacterial regulatory proteins, luxR family D3093_01985 PF00072 Response regulator receiver domain D3093_01990 PF00196 Bacterial regulatory proteins, luxR family D3093_01990 PF00072 Response regulator receiver domain D3093_01995 PF03450 CO dehydrogenase flavoprotein C-terminal domain D3093_01995 PF00941 FAD binding domain in molybdopterin dehydrogenase D3093_02000 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3093_02000 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D3093_02005 PF01774 UreD urease accessory protein D3093_02010 PF00547 Urease, gamma subunit D3093_02015 PF00699 Urease beta subunit D3093_02020 PF00449 Urease alpha-subunit, N-terminal domain D3093_02020 PF01979 Amidohydrolase family D3093_02025 PF01177 Asp/Glu/Hydantoin racemase D3093_02030 PF05194 UreE urease accessory protein, C-terminal domain D3093_02030 PF02814 UreE urease accessory protein, N-terminal domain D3093_02035 PF01730 UreF D3093_02040 PF02492 CobW/HypB/UreG, nucleotide-binding domain D3093_02045 PF05239 PRC-barrel domain D3093_02045 PF09557 Domain of unknown function (DUF2382) D3093_02070 PF01022 Bacterial regulatory protein, arsR family D3093_02095 PF00535 Glycosyl transferase family 2 D3093_02100 PF01381 Helix-turn-helix D3093_02120 PF00795 Carbon-nitrogen hydrolase D3093_02135 PF01895 PhoU domain D3093_02155 PF13180 PDZ domain D3093_02160 PF00535 Glycosyl transferase family 2 D3093_02180 PF00480 ROK family D3093_02190 PF02653 Branched-chain amino acid transport system / permease component D3093_02195 PF11862 Domain of unknown function (DUF3382) D3093_02195 PF02653 Branched-chain amino acid transport system / permease component D3093_02200 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_02200 PF00005 ABC transporter D3093_02205 PF00005 ABC transporter D3093_02215 PF13458 Periplasmic binding protein D3093_02230 PF00691 OmpA family D3093_02235 PF00196 Bacterial regulatory proteins, luxR family D3093_02235 PF00072 Response regulator receiver domain D3093_02240 PF00672 HAMP domain D3093_02240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_02240 PF00512 His Kinase A (phospho-acceptor) domain D3093_02240 PF00072 Response regulator receiver domain D3093_02240 PF01627 Hpt domain D3093_02245 PF10371 Domain of unknown function D3093_02245 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II D3093_02245 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase D3093_02245 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg D3093_02245 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3093_02255 PF00849 RNA pseudouridylate synthase D3093_02265 PF05681 Fumarate hydratase (Fumerase) D3093_02265 PF05683 Fumarase C-terminus D3093_02270 PF00550 Phosphopantetheine attachment site D3093_02270 PF13193 AMP-binding enzyme C-terminal domain D3093_02270 PF00501 AMP-binding enzyme D3093_02315 PF01541 GIY-YIG catalytic domain D3093_02315 PF12826 Helix-hairpin-helix motif D3093_02315 PF02151 UvrB/uvrC motif D3093_02315 PF08459 UvrC Helix-hairpin-helix N-terminal D3093_02320 PF01066 CDP-alcohol phosphatidyltransferase D3093_02325 PF03205 Molybdopterin guanine dinucleotide synthesis protein B D3093_02330 PF00994 Probable molybdopterin binding domain D3093_02330 PF03454 MoeA C-terminal region (domain IV) D3093_02330 PF03453 MoeA N-terminal region (domain I and II) D3093_02335 PF02597 ThiS family D3093_02340 PF02391 MoaE protein D3093_02350 PF01810 LysE type translocator D3093_02375 PF04542 Sigma-70 region 2 D3093_02375 PF04545 Sigma-70, region 4 D3093_02375 PF00140 Sigma-70 factor, region 1.2 D3093_02385 PF05443 ROS/MUCR transcriptional regulator protein D3093_02390 PF00216 Bacterial DNA-binding protein D3093_02395 PF03741 Integral membrane protein TerC family D3093_02425 PF01266 FAD dependent oxidoreductase D3093_02430 PF00120 Glutamine synthetase, catalytic domain D3093_02435 PF13416 Bacterial extracellular solute-binding protein D3093_02440 PF08402 TOBE domain D3093_02440 PF00005 ABC transporter D3093_02445 PF00528 Binding-protein-dependent transport system inner membrane component D3093_02450 PF00528 Binding-protein-dependent transport system inner membrane component D3093_02455 PF04371 Porphyromonas-type peptidyl-arginine deiminase D3093_02480 PF12706 Beta-lactamase superfamily domain D3093_02480 PF03099 Biotin/lipoate A/B protein ligase family D3093_02485 PF01026 TatD related DNase D3093_02490 PF09334 tRNA synthetases class I (M) D3093_02490 PF08264 Anticodon-binding domain of tRNA D3093_02495 PF09115 DNA polymerase III, delta subunit, C terminal D3093_02500 PF02223 Thymidylate kinase D3093_02505 PF00768 D-alanyl-D-alanine carboxypeptidase D3093_02505 PF07943 Penicillin-binding protein 5, C-terminal domain D3093_02510 PF03330 Lytic transglycolase D3093_02510 PF05036 Sporulation related domain D3093_02520 PF00672 HAMP domain D3093_02520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_02525 PF00133 tRNA synthetases class I (I, L, M and V) D3093_02525 PF10458 Valyl tRNA synthetase tRNA binding arm D3093_02525 PF08264 Anticodon-binding domain of tRNA D3093_02535 PF02321 Outer membrane efflux protein D3093_02565 PF13180 PDZ domain D3093_02565 PF00595 PDZ domain D3093_02570 PF00293 NUDIX domain D3093_02575 PF00571 CBS domain D3093_02575 PF00291 Pyridoxal-phosphate dependent enzyme D3093_02580 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D3093_02580 PF02272 DHHA1 domain D3093_02580 PF01411 tRNA synthetases class II (A) D3093_02585 PF00581 Rhodanese-like domain D3093_02605 PF00155 Aminotransferase class I and II D3093_02610 PF00005 ABC transporter D3093_02615 PF00528 Binding-protein-dependent transport system inner membrane component D3093_02620 PF00528 Binding-protein-dependent transport system inner membrane component D3093_02625 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_02630 PF01053 Cys/Met metabolism PLP-dependent enzyme D3093_02635 PF01502 Phosphoribosyl-AMP cyclohydrolase D3093_02680 PF00850 Histone deacetylase domain D3093_02710 PF16868 NMT1-like family D3093_02715 PF01799 [2Fe-2S] binding domain D3093_02715 PF00111 2Fe-2S iron-sulfur cluster binding domain D3093_02720 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3093_02720 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D3093_02725 PF00941 FAD binding domain in molybdopterin dehydrogenase D3093_02725 PF03450 CO dehydrogenase flavoprotein C-terminal domain D3093_02745 PF02625 XdhC and CoxI family D3093_02745 PF13478 XdhC Rossmann domain D3093_02750 PF02348 Cytidylyltransferase D3093_02755 PF00117 Glutamine amidotransferase class-I D3093_02760 PF02872 5'-nucleotidase, C-terminal domain D3093_02760 PF00149 Calcineurin-like phosphoesterase D3093_02770 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D3093_02770 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D3093_02785 PF02653 Branched-chain amino acid transport system / permease component D3093_02795 PF00005 ABC transporter D3093_02800 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_02800 PF00005 ABC transporter D3093_02805 PF12802 MarR family D3093_02810 PF00378 Enoyl-CoA hydratase/isomerase D3093_02815 PF00781 Diacylglycerol kinase catalytic domain D3093_02820 PF00149 Calcineurin-like phosphoesterase D3093_02825 PF00490 Delta-aminolevulinic acid dehydratase D3093_02830 PF01161 Phosphatidylethanolamine-binding protein D3093_02840 PF08468 Methyltransferase small domain N-terminal D3093_02840 PF05175 Methyltransferase small domain D3093_02845 PF01668 SmpB protein D3093_02850 PF00701 Dihydrodipicolinate synthetase family D3093_02855 PF01464 Transglycosylase SLT domain D3093_02865 PF02618 YceG-like family D3093_02870 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_02870 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_02875 PF00550 Phosphopantetheine attachment site D3093_02885 PF00698 Acyl transferase domain D3093_02890 PF01250 Ribosomal protein S6 D3093_02895 PF01084 Ribosomal protein S18 D3093_02905 PF03948 Ribosomal protein L9, C-terminal domain D3093_02905 PF01281 Ribosomal protein L9, N-terminal domain D3093_02920 PF03796 DnaB-like helicase C terminal domain D3093_02920 PF00772 DnaB-like helicase N terminal domain D3093_02925 PF00842 Alanine racemase, C-terminal domain D3093_02925 PF01168 Alanine racemase, N-terminal domain D3093_02930 PF02405 Permease MlaE D3093_02935 PF00005 ABC transporter D3093_02950 PF00557 Metallopeptidase family M24 D3093_02955 PF18073 Rubredoxin metal binding domain D3093_02955 PF06745 KaiC D3093_02965 PF00156 Phosphoribosyl transferase domain D3093_02965 PF13537 Glutamine amidotransferase domain D3093_02975 PF01926 50S ribosome-binding GTPase D3093_02975 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D3093_02995 PF00196 Bacterial regulatory proteins, luxR family D3093_02995 PF00072 Response regulator receiver domain D3093_03005 PF00196 Bacterial regulatory proteins, luxR family D3093_03005 PF00072 Response regulator receiver domain D3093_03015 PF02705 K+ potassium transporter D3093_03025 PF00672 HAMP domain D3093_03025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_03025 PF01627 Hpt domain D3093_03025 PF00072 Response regulator receiver domain D3093_03025 PF00512 His Kinase A (phospho-acceptor) domain D3093_03025 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_03030 PF02743 Cache domain D3093_03030 PF00672 HAMP domain D3093_03030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_03035 PF08447 PAS fold D3093_03035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_03040 PF00990 Diguanylate cyclase, GGDEF domain D3093_03040 PF00072 Response regulator receiver domain D3093_03045 PF00155 Aminotransferase class I and II D3093_03050 PF03186 CobD/Cbib protein D3093_03055 PF03435 Saccharopine dehydrogenase NADP binding domain D3093_03055 PF16653 Saccharopine dehydrogenase C-terminal domain D3093_03070 PF03079 ARD/ARD' family D3093_03075 PF07690 Major Facilitator Superfamily D3093_03090 PF13411 MerR HTH family regulatory protein D3093_03095 PF00501 AMP-binding enzyme D3093_03095 PF13193 AMP-binding enzyme C-terminal domain D3093_03115 PF00005 ABC transporter D3093_03125 PF00005 ABC transporter D3093_03135 PF00009 Elongation factor Tu GTP binding domain D3093_03140 PF01507 Phosphoadenosine phosphosulfate reductase family D3093_03145 PF01507 Phosphoadenosine phosphosulfate reductase family D3093_03150 PF10414 Sirohaem synthase dimerisation region D3093_03150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3093_03150 PF14824 Sirohaem biosynthesis protein central D3093_03155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3093_03165 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D3093_03165 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D3093_03180 PF02254 TrkA-N domain D3093_03180 PF00999 Sodium/hydrogen exchanger family D3093_03190 PF13411 MerR HTH family regulatory protein D3093_03195 PF00216 Bacterial DNA-binding protein D3093_03200 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3093_03200 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3093_03205 PF02504 Fatty acid synthesis protein D3093_03210 PF01783 Ribosomal L32p protein family D3093_03230 PF03030 Inorganic H+ pyrophosphatase D3093_03240 PF00586 AIR synthase related protein, N-terminal domain D3093_03240 PF02769 AIR synthase related protein, C-terminal domain D3093_03245 PF01029 NusB family D3093_03250 PF00885 6,7-dimethyl-8-ribityllumazine synthase D3093_03255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D3093_03255 PF00925 GTP cyclohydrolase II D3093_03260 PF00677 Lumazine binding domain D3093_03265 PF01872 RibD C-terminal domain D3093_03265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D3093_03270 PF03477 ATP cone domain D3093_03275 PF00464 Serine hydroxymethyltransferase D3093_03280 PF02502 Ribose/Galactose Isomerase D3093_03285 PF05443 ROS/MUCR transcriptional regulator protein D3093_03300 PF05974 Domain of unknown function (DUF892) D3093_03320 PF13673 Acetyltransferase (GNAT) domain D3093_03330 PF04675 DNA ligase N terminus D3093_03330 PF01068 ATP dependent DNA ligase domain D3093_03330 PF04679 ATP dependent DNA ligase C terminal region D3093_03340 PF04227 Indigoidine synthase A like protein D3093_03350 PF01048 Phosphorylase superfamily D3093_03405 PF00027 Cyclic nucleotide-binding domain D3093_03405 PF00325 Bacterial regulatory proteins, crp family D3093_03415 PF13545 Crp-like helix-turn-helix domain D3093_03415 PF00027 Cyclic nucleotide-binding domain D3093_03425 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family D3093_03430 PF00195 Chalcone and stilbene synthases, N-terminal domain D3093_03430 PF02797 Chalcone and stilbene synthases, C-terminal domain D3093_03440 PF00270 DEAD/DEAH box helicase D3093_03440 PF00271 Helicase conserved C-terminal domain D3093_03440 PF17191 RecG wedge domain D3093_03445 PF07685 CobB/CobQ-like glutamine amidotransferase domain D3093_03445 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D3093_03450 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP D3093_03450 PF12557 Cob(I)alamin adenosyltransferase N terminal D3093_03455 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase D3093_03485 PF00472 RF-1 domain D3093_03505 PF02559 CarD-like/TRCF domain D3093_03505 PF03461 TRCF domain D3093_03505 PF00270 DEAD/DEAH box helicase D3093_03505 PF00271 Helicase conserved C-terminal domain D3093_03505 PF17757 UvrB interaction domain D3093_03520 PF00378 Enoyl-CoA hydratase/isomerase D3093_03530 PF12867 DinB superfamily D3093_03530 PF03781 Sulfatase-modifying factor enzyme 1 D3093_03550 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_03550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3093_03555 PF05067 Manganese containing catalase D3093_03560 PF07690 Major Facilitator Superfamily D3093_03565 PF01474 Class-II DAHP synthetase family D3093_03575 PF00171 Aldehyde dehydrogenase family D3093_03580 PF02569 Pantoate-beta-alanine ligase D3093_03610 PF13419 Haloacid dehalogenase-like hydrolase D3093_03615 PF14602 Hexapeptide repeat of succinyl-transferase D3093_03615 PF00132 Bacterial transferase hexapeptide (six repeats) D3093_03615 PF12804 MobA-like NTP transferase domain D3093_03620 PF01380 SIS domain D3093_03625 PF01979 Amidohydrolase family D3093_03640 PF00005 ABC transporter D3093_03650 PF09084 NMT1/THI5 like D3093_03660 PF01594 AI-2E family transporter D3093_03665 PF00873 AcrB/AcrD/AcrF family D3093_03675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3093_03680 PF00871 Acetokinase family D3093_03685 PF01515 Phosphate acetyl/butaryl transferase D3093_03695 PF11339 Protein of unknown function (DUF3141) D3093_03740 PF03976 Polyphosphate kinase 2 (PPK2) D3093_03780 PF00239 Resolvase, N terminal domain D3093_03830 PF05951 Bacterial protein of unknown function (DUF882) D3093_03840 PF00301 Rubredoxin D3093_03855 PF01734 Patatin-like phospholipase D3093_03860 PF18125 RlmM ferredoxin-like domain D3093_03860 PF01728 FtsJ-like methyltransferase D3093_03880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_03880 PF00512 His Kinase A (phospho-acceptor) domain D3093_03885 PF00196 Bacterial regulatory proteins, luxR family D3093_03885 PF00072 Response regulator receiver domain D3093_03890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_03890 PF00989 PAS fold D3093_03890 PF00512 His Kinase A (phospho-acceptor) domain D3093_03895 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_03900 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D3093_03905 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_03910 PF03831 PhnA domain D3093_03910 PF08274 PhnA Zinc-Ribbon D3093_03915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_03925 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3093_03925 PF01568 Molydopterin dinucleotide binding domain D3093_03925 PF00384 Molybdopterin oxidoreductase D3093_03930 PF03060 Nitronate monooxygenase D3093_03935 PF00990 Diguanylate cyclase, GGDEF domain D3093_03950 PF00809 Pterin binding enzyme D3093_03950 PF02574 Homocysteine S-methyltransferase D3093_03950 PF02607 B12 binding domain D3093_03950 PF02310 B12 binding domain D3093_03950 PF02965 Vitamin B12 dependent methionine synthase, activation domain D3093_03960 PF02219 Methylenetetrahydrofolate reductase D3093_03965 PF03551 Transcriptional regulator PadR-like family D3093_03965 PF13847 Methyltransferase domain D3093_03970 PF04333 MlaA lipoprotein D3093_03985 PF12848 ABC transporter D3093_03985 PF00005 ABC transporter D3093_03990 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 D3093_03995 PF00929 Exonuclease D3093_04015 PF00210 Ferritin-like domain D3093_04020 PF02446 4-alpha-glucanotransferase D3093_04025 PF00072 Response regulator receiver domain D3093_04025 PF00486 Transcriptional regulatory protein, C terminal D3093_04030 PF00128 Alpha amylase, catalytic domain D3093_04030 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D3093_04045 PF02806 Alpha amylase, C-terminal all-beta domain D3093_04045 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D3093_04045 PF00128 Alpha amylase, catalytic domain D3093_04050 PF00128 Alpha amylase, catalytic domain D3093_04050 PF16657 Maltogenic Amylase, C-terminal domain D3093_04065 PF00459 Inositol monophosphatase family D3093_04070 PF04305 Protein of unknown function (DUF455) D3093_04085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_04085 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_04085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_04095 PF13193 AMP-binding enzyme C-terminal domain D3093_04095 PF00501 AMP-binding enzyme D3093_04100 PF00027 Cyclic nucleotide-binding domain D3093_04100 PF00325 Bacterial regulatory proteins, crp family D3093_04105 PF03781 Sulfatase-modifying factor enzyme 1 D3093_04110 PF00211 Adenylate and Guanylate cyclase catalytic domain D3093_04135 PF01389 OmpA-like transmembrane domain D3093_04135 PF00691 OmpA family D3093_04155 PF13545 Crp-like helix-turn-helix domain D3093_04155 PF00027 Cyclic nucleotide-binding domain D3093_04165 PF12802 MarR family D3093_04170 PF00561 alpha/beta hydrolase fold D3093_04185 PF01209 ubiE/COQ5 methyltransferase family D3093_04200 PF13614 AAA domain D3093_04210 PF08494 DEAD/H associated D3093_04210 PF00271 Helicase conserved C-terminal domain D3093_04210 PF00270 DEAD/DEAH box helicase D3093_04220 PF02469 Fasciclin domain D3093_04225 PF03441 FAD binding domain of DNA photolyase D3093_04225 PF00875 DNA photolyase D3093_04235 PF01475 Ferric uptake regulator family D3093_04240 PF07683 Cobalamin synthesis protein cobW C-terminal domain D3093_04240 PF02492 CobW/HypB/UreG, nucleotide-binding domain D3093_04255 PF03600 Citrate transporter D3093_04260 PF12706 Beta-lactamase superfamily domain D3093_04270 PF12729 Four helix bundle sensory module for signal transduction D3093_04270 PF00672 HAMP domain D3093_04270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_04275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_04275 PF17200 Single Cache domain 2 D3093_04275 PF00672 HAMP domain D3093_04280 PF01545 Cation efflux family D3093_04280 PF16916 Dimerisation domain of Zinc Transporter D3093_04285 PF01243 Pyridoxamine 5'-phosphate oxidase D3093_04285 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D3093_04290 PF16998 17 kDa outer membrane surface antigen D3093_04290 PF05433 Glycine zipper 2TM domain D3093_04295 PF01556 DnaJ C terminal domain D3093_04295 PF00226 DnaJ domain D3093_04295 PF00684 DnaJ central domain D3093_04300 PF00004 ATPase family associated with various cellular activities (AAA) D3093_04300 PF17862 AAA+ lid domain D3093_04300 PF06480 FtsH Extracellular D3093_04300 PF01434 Peptidase family M41 D3093_04315 PF00072 Response regulator receiver domain D3093_04315 PF00486 Transcriptional regulatory protein, C terminal D3093_04320 PF00512 His Kinase A (phospho-acceptor) domain D3093_04320 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_04320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_04325 PF09345 Domain of unknown function (DUF1987) D3093_04335 PF11849 Domain of unknown function (DUF3369) D3093_04355 PF00893 Small Multidrug Resistance protein D3093_04365 PF02566 OsmC-like protein D3093_04375 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D3093_04385 PF00892 EamA-like transporter family D3093_04390 PF00733 Asparagine synthase D3093_04390 PF13537 Glutamine amidotransferase domain D3093_04400 PF01370 NAD dependent epimerase/dehydratase family D3093_04405 PF13477 Glycosyl transferase 4-like D3093_04405 PF00534 Glycosyl transferases group 1 D3093_04410 PF00953 Glycosyl transferase family 4 D3093_04415 PF01370 NAD dependent epimerase/dehydratase family D3093_04420 PF02719 Polysaccharide biosynthesis protein D3093_04430 PF00691 OmpA family D3093_04435 PF07676 WD40-like Beta Propeller Repeat D3093_04435 PF04052 TolB amino-terminal domain D3093_04445 PF02472 Biopolymer transport protein ExbD/TolR D3093_04450 PF01618 MotA/TolQ/ExbB proton channel family D3093_04455 PF03061 Thioesterase superfamily D3093_04460 PF17864 RuvB AAA lid domain D3093_04460 PF05491 RuvB C-terminal winged helix domain D3093_04460 PF05496 Holliday junction DNA helicase RuvB P-loop domain D3093_04465 PF01330 RuvA N terminal domain D3093_04465 PF07499 RuvA, C-terminal domain D3093_04475 PF01709 Transcriptional regulator D3093_04480 PF13277 YmdB-like protein D3093_04485 PF01812 5-formyltetrahydrofolate cyclo-ligase family D3093_04505 PF00456 Transketolase, thiamine diphosphate binding domain D3093_04505 PF02779 Transketolase, pyrimidine binding domain D3093_04505 PF02780 Transketolase, C-terminal domain D3093_04510 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D3093_04510 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D3093_04530 PF01791 DeoC/LacD family aldolase D3093_04535 PF02581 Thiamine monophosphate synthase D3093_04540 PF01925 Sulfite exporter TauE/SafE D3093_04545 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D3093_04550 PF00107 Zinc-binding dehydrogenase D3093_04550 PF08240 Alcohol dehydrogenase GroES-like domain D3093_04555 PF00152 tRNA synthetases class II (D, K and N) D3093_04560 PF09285 Elongation factor P, C-terminal D3093_04560 PF08207 Elongation factor P (EF-P) KOW-like domain D3093_04560 PF01132 Elongation factor P (EF-P) OB domain D3093_04565 PF00459 Inositol monophosphatase family D3093_04580 PF00691 OmpA family D3093_04580 PF13677 Membrane MotB of proton-channel complex MotA/MotB D3093_04585 PF00665 Integrase core domain D3093_04585 PF13936 Helix-turn-helix domain D3093_04590 PF00266 Aminotransferase class-V D3093_04595 PF02347 Glycine cleavage system P-protein D3093_04600 PF01597 Glycine cleavage H-protein D3093_04605 PF01571 Aminomethyltransferase folate-binding domain D3093_04605 PF08669 Glycine cleavage T-protein C-terminal barrel domain D3093_04620 PF02401 LytB protein D3093_04630 PF01636 Phosphotransferase enzyme family D3093_04635 PF00075 RNase H D3093_04640 PF00501 AMP-binding enzyme D3093_04640 PF13193 AMP-binding enzyme C-terminal domain D3093_04645 PF08534 Redoxin D3093_04650 PF11412 Disulphide bond corrector protein DsbC D3093_04650 PF02683 Cytochrome C biogenesis protein transmembrane region D3093_04655 PF02622 Uncharacterized ACR, COG1678 D3093_04665 PF13302 Acetyltransferase (GNAT) domain D3093_04670 PF05193 Peptidase M16 inactive domain D3093_04670 PF00675 Insulinase (Peptidase family M16) D3093_04675 PF00291 Pyridoxal-phosphate dependent enzyme D3093_04675 PF14821 Threonine synthase N terminus D3093_04680 PF00150 Cellulase (glycosyl hydrolase family 5) D3093_04685 PF02074 Carboxypeptidase Taq (M32) metallopeptidase D3093_04690 PF02104 SURF1 family D3093_04700 PF00510 Cytochrome c oxidase subunit III D3093_04705 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 D3093_04710 PF01040 UbiA prenyltransferase family D3093_04715 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3093_04720 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D3093_04720 PF02790 Cytochrome C oxidase subunit II, transmembrane domain D3093_04730 PF01523 Putative modulator of DNA gyrase D3093_04740 PF06082 Exopolysaccharide biosynthesis protein YbjH D3093_04750 PF07043 Protein of unknown function (DUF1328) D3093_04755 PF04542 Sigma-70 region 2 D3093_04755 PF08281 Sigma-70, region 4 D3093_04760 PF01464 Transglycosylase SLT domain D3093_04775 PF01212 Beta-eliminating lyase D3093_04785 PF00849 RNA pseudouridylate synthase D3093_04790 PF00140 Sigma-70 factor, region 1.2 D3093_04790 PF04545 Sigma-70, region 4 D3093_04790 PF04542 Sigma-70 region 2 D3093_04800 PF00069 Protein kinase domain D3093_04805 PF00709 Adenylosuccinate synthetase D3093_04810 PF13393 Histidyl-tRNA synthetase D3093_04820 PF02386 Cation transport protein D3093_04835 PF06463 Molybdenum Cofactor Synthesis C D3093_04835 PF04055 Radical SAM superfamily D3093_04840 PF03631 Virulence factor BrkB D3093_04855 PF01548 Transposase D3093_04855 PF02371 Transposase IS116/IS110/IS902 family D3093_04865 PF01264 Chorismate synthase D3093_04875 PF00486 Transcriptional regulatory protein, C terminal D3093_04875 PF00072 Response regulator receiver domain D3093_04885 PF01343 Peptidase family S49 D3093_04895 PF01339 CheB methylesterase D3093_04895 PF01739 CheR methyltransferase, SAM binding domain D3093_04895 PF03705 CheR methyltransferase, all-alpha domain D3093_04895 PF08448 PAS fold D3093_04900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_04900 PF00072 Response regulator receiver domain D3093_04900 PF00989 PAS fold D3093_04900 PF01627 Hpt domain D3093_04900 PF18415 Histidine kinase receptor ArcB trans-membrane domain D3093_04900 PF00512 His Kinase A (phospho-acceptor) domain D3093_04910 PF03649 Uncharacterised protein family (UPF0014) D3093_04915 PF00005 ABC transporter D3093_04920 PF07690 Major Facilitator Superfamily D3093_04925 PF01594 AI-2E family transporter D3093_04930 PF00512 His Kinase A (phospho-acceptor) domain D3093_04930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_04930 PF00672 HAMP domain D3093_04935 PF00486 Transcriptional regulatory protein, C terminal D3093_04935 PF00072 Response regulator receiver domain D3093_04940 PF13180 PDZ domain D3093_04950 PF03764 Elongation factor G, domain IV D3093_04950 PF00679 Elongation factor G C-terminus D3093_04950 PF00009 Elongation factor Tu GTP binding domain D3093_04950 PF03144 Elongation factor Tu domain 2 D3093_04950 PF14492 Elongation Factor G, domain II D3093_04955 PF01042 Endoribonuclease L-PSP D3093_04965 PF01751 Toprim domain D3093_04965 PF01131 DNA topoisomerase D3093_04985 PF00535 Glycosyl transferase family 2 D3093_04985 PF07238 PilZ domain D3093_04985 PF03170 Bacterial cellulose synthase subunit D3093_04995 PF00633 Helix-hairpin-helix motif D3093_04995 PF00730 HhH-GPD superfamily base excision DNA repair protein D3093_04995 PF10576 Iron-sulfur binding domain of endonuclease III D3093_05005 PF00176 SNF2 family N-terminal domain D3093_05005 PF00271 Helicase conserved C-terminal domain D3093_05005 PF04434 SWIM zinc finger D3093_05030 PF04539 Sigma-70 region 3 D3093_05030 PF04545 Sigma-70, region 4 D3093_05030 PF04542 Sigma-70 region 2 D3093_05030 PF03979 Sigma-70 factor, region 1.1 D3093_05030 PF00140 Sigma-70 factor, region 1.2 D3093_05030 PF04546 Sigma-70, non-essential region D3093_05035 PF08278 DNA primase DnaG DnaB-binding D3093_05035 PF13662 Toprim domain D3093_05035 PF08275 DNA primase catalytic core, N-terminal domain D3093_05035 PF01807 CHC2 zinc finger D3093_05035 PF10410 DnaB-helicase binding domain of primase D3093_05045 PF00117 Glutamine amidotransferase class-I D3093_05045 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D3093_05050 PF08448 PAS fold D3093_05050 PF00512 His Kinase A (phospho-acceptor) domain D3093_05050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_05050 PF00072 Response regulator receiver domain D3093_05050 PF13188 PAS domain D3093_05070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3093_05070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3093_05075 PF03960 ArsC family D3093_05080 PF05175 Methyltransferase small domain D3093_05085 PF00814 Glycoprotease family D3093_05085 PF00583 Acetyltransferase (GNAT) family D3093_05095 PF01066 CDP-alcohol phosphatidyltransferase D3093_05100 PF02666 Phosphatidylserine decarboxylase D3093_05120 PF03641 Possible lysine decarboxylase D3093_05125 PF00180 Isocitrate/isopropylmalate dehydrogenase D3093_05135 PF06055 Exopolysaccharide synthesis, ExoD D3093_05150 PF04542 Sigma-70 region 2 D3093_05150 PF08281 Sigma-70, region 4 D3093_05155 PF00180 Isocitrate/isopropylmalate dehydrogenase D3093_05155 PF18324 Hypothetical protein TT1725 D3093_05185 PF13291 ACT domain D3093_05185 PF02824 TGS domain D3093_05185 PF04607 Region found in RelA / SpoT proteins D3093_05190 PF13746 4Fe-4S dicluster domain D3093_05190 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase D3093_05190 PF12801 4Fe-4S binding domain D3093_05205 PF00291 Pyridoxal-phosphate dependent enzyme D3093_05205 PF13291 ACT domain D3093_05220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D3093_05220 PF01411 tRNA synthetases class II (A) D3093_05220 PF02272 DHHA1 domain D3093_05225 PF00154 recA bacterial DNA recombination protein D3093_05235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_05235 PF00512 His Kinase A (phospho-acceptor) domain D3093_05235 PF00072 Response regulator receiver domain D3093_05235 PF13188 PAS domain D3093_05235 PF08448 PAS fold D3093_05240 PF01312 FlhB HrpN YscU SpaS Family D3093_05245 PF01311 Bacterial export proteins, family 1 D3093_05250 PF01313 Bacterial export proteins, family 3 D3093_05255 PF02049 Flagellar hook-basal body complex protein FliE D3093_05260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3093_05265 PF00460 Flagella basal body rod protein D3093_05270 PF01312 FlhB HrpN YscU SpaS Family D3093_05285 PF00813 FliP family D3093_05290 PF02705 K+ potassium transporter D3093_05305 PF13677 Membrane MotB of proton-channel complex MotA/MotB D3093_05305 PF00691 OmpA family D3093_05335 PF02154 Flagellar motor switch protein FliM D3093_05335 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D3093_05345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3093_05345 PF00460 Flagella basal body rod protein D3093_05350 PF00460 Flagella basal body rod protein D3093_05350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3093_05360 PF02107 Flagellar L-ring protein D3093_05370 PF01258 Prokaryotic dksA/traR C4-type zinc finger D3093_05375 PF10768 Class II flagellar assembly regulator D3093_05380 PF02119 Flagellar P-ring protein D3093_05385 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D3093_05385 PF10135 Rod binding protein D3093_05400 PF03963 Flagellar hook capping protein - N-terminal region D3093_05410 PF07977 FabA-like domain D3093_05425 PF10119 Predicted methyltransferase regulatory domain D3093_05425 PF13847 Methyltransferase domain D3093_05430 PF00005 ABC transporter D3093_05430 PF00664 ABC transporter transmembrane region D3093_05435 PF01197 Ribosomal protein L31 D3093_05445 PF00011 Hsp20/alpha crystallin family D3093_05450 PF13188 PAS domain D3093_05450 PF00989 PAS fold D3093_05450 PF00512 His Kinase A (phospho-acceptor) domain D3093_05450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_05455 PF00364 Biotin-requiring enzyme D3093_05455 PF00561 alpha/beta hydrolase fold D3093_05460 PF01053 Cys/Met metabolism PLP-dependent enzyme D3093_05465 PF04107 Glutamate-cysteine ligase family 2(GCS2) D3093_05480 PF00392 Bacterial regulatory proteins, gntR family D3093_05480 PF07729 FCD domain D3093_05485 PF05191 Adenylate kinase, active site lid D3093_05490 PF00344 SecY translocase D3093_05495 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D3093_05500 PF00327 Ribosomal protein L30p/L7e D3093_05505 PF03719 Ribosomal protein S5, C-terminal domain D3093_05505 PF00333 Ribosomal protein S5, N-terminal domain D3093_05510 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D3093_05515 PF00347 Ribosomal protein L6 D3093_05520 PF00410 Ribosomal protein S8 D3093_05525 PF00253 Ribosomal protein S14p/S29e D3093_05530 PF00673 ribosomal L5P family C-terminus D3093_05530 PF00281 Ribosomal protein L5 D3093_05535 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D3093_05535 PF00467 KOW motif D3093_05540 PF00238 Ribosomal protein L14p/L23e D3093_05545 PF00366 Ribosomal protein S17 D3093_05550 PF00831 Ribosomal L29 protein D3093_05555 PF00252 Ribosomal protein L16p/L10e D3093_05560 PF07650 KH domain D3093_05560 PF00189 Ribosomal protein S3, C-terminal domain D3093_05565 PF00237 Ribosomal protein L22p/L17e D3093_05570 PF00203 Ribosomal protein S19 D3093_05575 PF03947 Ribosomal Proteins L2, C-terminal domain D3093_05575 PF00181 Ribosomal Proteins L2, RNA binding domain D3093_05580 PF00276 Ribosomal protein L23 D3093_05585 PF00573 Ribosomal protein L4/L1 family D3093_05590 PF00297 Ribosomal protein L3 D3093_05595 PF00338 Ribosomal protein S10p/S20e D3093_05600 PF03143 Elongation factor Tu C-terminal domain D3093_05600 PF00009 Elongation factor Tu GTP binding domain D3093_05600 PF03144 Elongation factor Tu domain 2 D3093_05605 PF03144 Elongation factor Tu domain 2 D3093_05605 PF00009 Elongation factor Tu GTP binding domain D3093_05605 PF00679 Elongation factor G C-terminus D3093_05605 PF14492 Elongation Factor G, domain II D3093_05605 PF03764 Elongation factor G, domain IV D3093_05610 PF00177 Ribosomal protein S7p/S5e D3093_05615 PF00164 Ribosomal protein S12/S23 D3093_05620 PF01965 DJ-1/PfpI family D3093_05625 PF04997 RNA polymerase Rpb1, domain 1 D3093_05625 PF00623 RNA polymerase Rpb1, domain 2 D3093_05625 PF04983 RNA polymerase Rpb1, domain 3 D3093_05625 PF05000 RNA polymerase Rpb1, domain 4 D3093_05625 PF04998 RNA polymerase Rpb1, domain 5 D3093_05630 PF04563 RNA polymerase beta subunit D3093_05630 PF04561 RNA polymerase Rpb2, domain 2 D3093_05630 PF04560 RNA polymerase Rpb2, domain 7 D3093_05630 PF04565 RNA polymerase Rpb2, domain 3 D3093_05630 PF10385 RNA polymerase beta subunit external 1 domain D3093_05630 PF00562 RNA polymerase Rpb2, domain 6 D3093_05635 PF00542 Ribosomal protein L7/L12 C-terminal domain D3093_05635 PF16320 Ribosomal protein L7/L12 dimerisation domain D3093_05640 PF00466 Ribosomal protein L10 D3093_05645 PF00687 Ribosomal protein L1p/L10e family D3093_05650 PF00298 Ribosomal protein L11, RNA binding domain D3093_05650 PF03946 Ribosomal protein L11, N-terminal domain D3093_05655 PF00467 KOW motif D3093_05655 PF02357 Transcription termination factor nusG D3093_05670 PF03143 Elongation factor Tu C-terminal domain D3093_05670 PF03144 Elongation factor Tu domain 2 D3093_05670 PF00009 Elongation factor Tu GTP binding domain D3093_05685 PF08032 RNA 2'-O ribose methyltransferase substrate binding D3093_05685 PF00588 SpoU rRNA Methylase family D3093_05720 PF13458 Periplasmic binding protein D3093_05730 PF00005 ABC transporter D3093_05730 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_05735 PF00005 ABC transporter D3093_05745 PF03633 Glycosyl hydrolase family 65, C-terminal domain D3093_05745 PF03632 Glycosyl hydrolase family 65 central catalytic domain D3093_05745 PF03636 Glycosyl hydrolase family 65, N-terminal domain D3093_05745 PF02358 Trehalose-phosphatase D3093_05750 PF01979 Amidohydrolase family D3093_05760 PF00480 ROK family D3093_05770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_05770 PF00672 HAMP domain D3093_05775 PF01546 Peptidase family M20/M25/M40 D3093_05775 PF07687 Peptidase dimerisation domain D3093_05780 PF00005 ABC transporter D3093_05785 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_05785 PF00005 ABC transporter D3093_05795 PF02653 Branched-chain amino acid transport system / permease component D3093_05815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3093_05815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D3093_05825 PF00005 ABC transporter D3093_05835 PF00528 Binding-protein-dependent transport system inner membrane component D3093_05840 PF17926 Tetracyclin repressor-like, C-terminal domain D3093_05840 PF00440 Bacterial regulatory proteins, tetR family D3093_05850 PF03781 Sulfatase-modifying factor enzyme 1 D3093_05870 PF16177 Acetyl-coenzyme A synthetase N-terminus D3093_05870 PF00501 AMP-binding enzyme D3093_05870 PF13193 AMP-binding enzyme C-terminal domain D3093_05875 PF00005 ABC transporter D3093_05905 PF03062 MBOAT, membrane-bound O-acyltransferase family D3093_05915 PF00905 Penicillin binding protein transpeptidase domain D3093_05915 PF00912 Transglycosylase D3093_05915 PF17092 Penicillin-binding protein OB-like domain D3093_05920 PF01520 N-acetylmuramoyl-L-alanine amidase D3093_05920 PF11741 AMIN domain D3093_05925 PF10150 Ribonuclease E/G family D3093_05925 PF12111 Polyribonucleotide phosphorylase C terminal D3093_05925 PF00575 S1 RNA binding domain D3093_05930 PF01272 Transcription elongation factor, GreA/GreB, C-term D3093_05930 PF03449 Transcription elongation factor, N-terminal D3093_05960 PF04107 Glutamate-cysteine ligase family 2(GCS2) D3093_05965 PF04452 RNA methyltransferase D3093_05970 PF01040 UbiA prenyltransferase family D3093_05990 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D3093_06020 PF00781 Diacylglycerol kinase catalytic domain D3093_06030 PF13439 Glycosyltransferase Family 4 D3093_06030 PF00534 Glycosyl transferases group 1 D3093_06040 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D3093_06045 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D3093_06055 PF01810 LysE type translocator D3093_06080 PF03588 Leucyl/phenylalanyl-tRNA protein transferase D3093_06085 PF00445 Ribonuclease T2 family D3093_06090 PF00289 Biotin carboxylase, N-terminal domain D3093_06090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3093_06090 PF02785 Biotin carboxylase C-terminal domain D3093_06095 PF00364 Biotin-requiring enzyme D3093_06100 PF01220 Dehydroquinase class II D3093_06115 PF01545 Cation efflux family D3093_06130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_06130 PF00672 HAMP domain D3093_06145 PF05951 Bacterial protein of unknown function (DUF882) D3093_06150 PF01471 Putative peptidoglycan binding domain D3093_06150 PF01520 N-acetylmuramoyl-L-alanine amidase D3093_06180 PF00512 His Kinase A (phospho-acceptor) domain D3093_06180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_06190 PF00128 Alpha amylase, catalytic domain D3093_06190 PF11941 Domain of unknown function (DUF3459) D3093_06190 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D3093_06200 PF00107 Zinc-binding dehydrogenase D3093_06200 PF08240 Alcohol dehydrogenase GroES-like domain D3093_06200 PF13823 Alcohol dehydrogenase GroES-associated D3093_06220 PF12146 Serine aminopeptidase, S33 D3093_06225 PF03788 LrgA family D3093_06230 PF04172 LrgB-like family D3093_06235 PF00682 HMGL-like D3093_06235 PF08502 LeuA allosteric (dimerisation) domain D3093_06240 PF05746 DALR anticodon binding domain D3093_06240 PF02092 Glycyl-tRNA synthetase beta subunit D3093_06255 PF06965 Na+/H+ antiporter 1 D3093_06255 PF01343 Peptidase family S49 D3093_06270 PF00348 Polyprenyl synthetase D3093_06295 PF00072 Response regulator receiver domain D3093_06295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_06295 PF13426 PAS domain D3093_06310 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3093_06310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3093_06315 PF02913 FAD linked oxidases, C-terminal domain D3093_06315 PF01565 FAD binding domain D3093_06320 PF01968 Hydantoinase/oxoprolinase D3093_06320 PF05378 Hydantoinase/oxoprolinase N-terminal region D3093_06330 PF05099 Tellurite resistance protein TerB D3093_06330 PF00226 DnaJ domain D3093_06345 PF01510 N-acetylmuramoyl-L-alanine amidase D3093_06365 PF02381 MraZ protein, putative antitoxin-like D3093_06370 PF01795 MraW methylase family D3093_06380 PF03717 Penicillin-binding Protein dimerisation domain D3093_06380 PF00905 Penicillin binding protein transpeptidase domain D3093_06385 PF02875 Mur ligase family, glutamate ligase domain D3093_06385 PF08245 Mur ligase middle domain D3093_06385 PF01225 Mur ligase family, catalytic domain D3093_06390 PF01225 Mur ligase family, catalytic domain D3093_06390 PF08245 Mur ligase middle domain D3093_06390 PF02875 Mur ligase family, glutamate ligase domain D3093_06395 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D3093_06395 PF00953 Glycosyl transferase family 4 D3093_06400 PF08245 Mur ligase middle domain D3093_06405 PF01098 Cell cycle protein D3093_06410 PF03033 Glycosyltransferase family 28 N-terminal domain D3093_06410 PF04101 Glycosyltransferase family 28 C-terminal domain D3093_06420 PF02875 Mur ligase family, glutamate ligase domain D3093_06420 PF08245 Mur ligase middle domain D3093_06420 PF01225 Mur ligase family, catalytic domain D3093_06425 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D3093_06425 PF01565 FAD binding domain D3093_06430 PF07478 D-ala D-ala ligase C-terminus D3093_06430 PF01820 D-ala D-ala ligase N-terminus D3093_06435 PF08478 POTRA domain, FtsQ-type D3093_06435 PF03799 Cell division protein FtsQ D3093_06440 PF02491 SHS2 domain inserted in FTSA D3093_06445 PF12327 FtsZ family, C-terminal domain D3093_06445 PF00091 Tubulin/FtsZ family, GTPase domain D3093_06450 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D3093_06460 PF03120 NAD-dependent DNA ligase OB-fold domain D3093_06460 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D3093_06460 PF12826 Helix-hairpin-helix motif D3093_06460 PF01653 NAD-dependent DNA ligase adenylation domain D3093_06460 PF00533 BRCA1 C Terminus (BRCT) domain D3093_06470 PF00672 HAMP domain D3093_06470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_06485 PF02463 RecF/RecN/SMC N terminal domain D3093_06490 PF13525 Outer membrane lipoprotein D3093_06505 PF00072 Response regulator receiver domain D3093_06510 PF00557 Metallopeptidase family M24 D3093_06510 PF01321 Creatinase/Prolidase N-terminal domain D3093_06510 PF00557 Metallopeptidase family M24 D3093_06510 PF01321 Creatinase/Prolidase N-terminal domain D3093_06535 PF13361 UvrD-like helicase C-terminal domain D3093_06535 PF00580 UvrD/REP helicase N-terminal domain D3093_06540 PF00196 Bacterial regulatory proteins, luxR family D3093_06540 PF00072 Response regulator receiver domain D3093_06545 PF00072 Response regulator receiver domain D3093_06545 PF00196 Bacterial regulatory proteins, luxR family D3093_06575 PF00571 CBS domain D3093_06585 PF00871 Acetokinase family D3093_06590 PF01515 Phosphate acetyl/butaryl transferase D3093_06595 PF00512 His Kinase A (phospho-acceptor) domain D3093_06595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_06605 PF00989 PAS fold D3093_06605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_06605 PF00512 His Kinase A (phospho-acceptor) domain D3093_06615 PF00512 His Kinase A (phospho-acceptor) domain D3093_06615 PF01627 Hpt domain D3093_06615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_06615 PF00672 HAMP domain D3093_06615 PF00072 Response regulator receiver domain D3093_06615 PF17149 Periplasmic sensor domain found in signal transduction proteins D3093_06630 PF04055 Radical SAM superfamily D3093_06630 PF06463 Molybdenum Cofactor Synthesis C D3093_06635 PF01513 ATP-NAD kinase D3093_06645 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family D3093_06650 PF05145 Transition state regulatory protein AbrB D3093_06665 PF01594 AI-2E family transporter D3093_06670 PF01145 SPFH domain / Band 7 family D3093_06670 PF16200 C-terminal region of band_7 D3093_06690 PF00072 Response regulator receiver domain D3093_06690 PF00486 Transcriptional regulatory protein, C terminal D3093_06710 PF00005 ABC transporter D3093_06715 PF08482 ATP-dependent helicase C-terminal D3093_06715 PF00270 DEAD/DEAH box helicase D3093_06715 PF00271 Helicase conserved C-terminal domain D3093_06715 PF04408 Helicase associated domain (HA2) D3093_06725 PF00672 HAMP domain D3093_06725 PF00211 Adenylate and Guanylate cyclase catalytic domain D3093_06730 PF04293 SpoVR like protein D3093_06735 PF04285 Protein of unknown function (DUF444) D3093_06740 PF08298 PrkA AAA domain D3093_06740 PF06798 PrkA serine protein kinase C-terminal domain D3093_06745 PF00072 Response regulator receiver domain D3093_06745 PF08769 Sporulation initiation factor Spo0A C terminal D3093_06755 PF09308 LuxQ, periplasmic D3093_06755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_06755 PF00072 Response regulator receiver domain D3093_06755 PF00512 His Kinase A (phospho-acceptor) domain D3093_06760 PF00749 tRNA synthetases class I (E and Q), catalytic domain D3093_06775 PF03232 Ubiquinone biosynthesis protein COQ7 D3093_06780 PF02600 Disulfide bond formation protein DsbB D3093_06795 PF00034 Cytochrome c D3093_06815 PF00005 ABC transporter D3093_06825 PF00072 Response regulator receiver domain D3093_06825 PF00196 Bacterial regulatory proteins, luxR family D3093_06830 PF13360 PQQ-like domain D3093_06830 PF01011 PQQ enzyme repeat D3093_06865 PF00005 ABC transporter D3093_06875 PF02540 NAD synthase D3093_06875 PF00795 Carbon-nitrogen hydrolase D3093_06880 PF00355 Rieske [2Fe-2S] domain D3093_06895 PF00144 Beta-lactamase D3093_06905 PF00535 Glycosyl transferase family 2 D3093_06910 PF00672 HAMP domain D3093_06910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_06925 PF02653 Branched-chain amino acid transport system / permease component D3093_06935 PF04055 Radical SAM superfamily D3093_06940 PF06508 Queuosine biosynthesis protein QueC D3093_06960 PF00005 ABC transporter D3093_06960 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_06965 PF00005 ABC transporter D3093_06980 PF00829 Ribosomal prokaryotic L21 protein D3093_06985 PF01016 Ribosomal L27 protein D3093_06995 PF00696 Amino acid kinase family D3093_06995 PF01472 PUA domain D3093_07000 PF13419 Haloacid dehalogenase-like hydrolase D3093_07020 PF01925 Sulfite exporter TauE/SafE D3093_07025 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3093_07025 PF00034 Cytochrome c D3093_07030 PF00171 Aldehyde dehydrogenase family D3093_07035 PF01467 Cytidylyltransferase-like D3093_07045 PF02590 Predicted SPOUT methyltransferase D3093_07050 PF01676 Metalloenzyme superfamily D3093_07050 PF06415 BPG-independent PGAM N-terminus (iPGM_N) D3093_07060 PF03572 Peptidase family S41 D3093_07060 PF13180 PDZ domain D3093_07070 PF00293 NUDIX domain D3093_07080 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D3093_07085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3093_07085 PF02874 ATP synthase alpha/beta family, beta-barrel domain D3093_07090 PF00231 ATP synthase D3093_07095 PF00306 ATP synthase alpha/beta chain, C terminal domain D3093_07095 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3093_07095 PF02874 ATP synthase alpha/beta family, beta-barrel domain D3093_07100 PF00213 ATP synthase delta (OSCP) subunit D3093_07115 PF18074 Primosomal protein N C-terminal domain D3093_07115 PF00270 DEAD/DEAH box helicase D3093_07115 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D3093_07115 PF17764 3′ DNA-binding domain (3′BD) D3093_07120 PF00923 Transaldolase/Fructose-6-phosphate aldolase D3093_07130 PF00589 Phage integrase family D3093_07130 PF02899 Phage integrase, N-terminal SAM-like domain D3093_07135 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_07135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3093_07145 PF00561 alpha/beta hydrolase fold D3093_07155 PF01467 Cytidylyltransferase-like D3093_07155 PF00294 pfkB family carbohydrate kinase D3093_07165 PF00512 His Kinase A (phospho-acceptor) domain D3093_07165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_07175 PF13649 Methyltransferase domain D3093_07195 PF13649 Methyltransferase domain D3093_07200 PF00162 Phosphoglycerate kinase D3093_07205 PF13662 Toprim domain D3093_07205 PF02132 RecR protein D3093_07210 PF02575 YbaB/EbfC DNA-binding family D3093_07215 PF12169 DNA polymerase III subunits gamma and tau domain III D3093_07215 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding D3093_07215 PF12170 DNA polymerase III tau subunit V interacting with alpha D3093_07225 PF00034 Cytochrome c D3093_07230 PF02348 Cytidylyltransferase D3093_07235 PF01842 ACT domain D3093_07235 PF00800 Prephenate dehydratase D3093_07240 PF00293 NUDIX domain D3093_07240 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain D3093_07240 PF09297 NADH pyrophosphatase zinc ribbon domain D3093_07245 PF00459 Inositol monophosphatase family D3093_07255 PF00230 Major intrinsic protein D3093_07260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_07265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_07270 PF00528 Binding-protein-dependent transport system inner membrane component D3093_07275 PF00528 Binding-protein-dependent transport system inner membrane component D3093_07275 PF12911 N-terminal TM domain of oligopeptide transport permease C D3093_07290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_07290 PF00005 ABC transporter D3093_07295 PF00849 RNA pseudouridylate synthase D3093_07300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3093_07310 PF01706 FliG C-terminal domain D3093_07310 PF14842 FliG N-terminal domain D3093_07310 PF14841 FliG middle domain D3093_07315 PF02789 Cytosol aminopeptidase family, N-terminal domain D3093_07315 PF00883 Cytosol aminopeptidase family, catalytic domain D3093_07325 PF16868 NMT1-like family D3093_07345 PF07733 Bacterial DNA polymerase III alpha NTPase domain D3093_07345 PF02811 PHP domain D3093_07345 PF14579 Helix-hairpin-helix motif D3093_07345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D3093_07345 PF01336 OB-fold nucleic acid binding domain D3093_07380 PF04055 Radical SAM superfamily D3093_07385 PF02798 Glutathione S-transferase, N-terminal domain D3093_07385 PF00043 Glutathione S-transferase, C-terminal domain D3093_07395 PF01548 Transposase D3093_07395 PF02371 Transposase IS116/IS110/IS902 family D3093_07400 PF12911 N-terminal TM domain of oligopeptide transport permease C D3093_07400 PF00528 Binding-protein-dependent transport system inner membrane component D3093_07405 PF00528 Binding-protein-dependent transport system inner membrane component D3093_07410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_07415 PF00378 Enoyl-CoA hydratase/isomerase D3093_07420 PF07690 Major Facilitator Superfamily D3093_07430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_07430 PF03466 LysR substrate binding domain D3093_07455 PF08448 PAS fold D3093_07455 PF08447 PAS fold D3093_07455 PF00990 Diguanylate cyclase, GGDEF domain D3093_07455 PF00563 EAL domain D3093_07460 PF02798 Glutathione S-transferase, N-terminal domain D3093_07465 PF00202 Aminotransferase class-III D3093_07475 PF00155 Aminotransferase class I and II D3093_07505 PF02646 RmuC family D3093_07510 PF00313 'Cold-shock' DNA-binding domain D3093_07520 PF01327 Polypeptide deformylase D3093_07525 PF00551 Formyl transferase D3093_07525 PF02911 Formyl transferase, C-terminal domain D3093_07530 PF01416 tRNA pseudouridine synthase D3093_07535 PF02653 Branched-chain amino acid transport system / permease component D3093_07540 PF01878 EVE domain D3093_07550 PF08279 HTH domain D3093_07550 PF13280 WYL domain D3093_07555 PF00330 Aconitase family (aconitate hydratase) D3093_07570 PF01245 Ribosomal protein L19 D3093_07575 PF01746 tRNA (Guanine-1)-methyltransferase D3093_07580 PF05239 PRC-barrel domain D3093_07580 PF01782 RimM N-terminal domain D3093_07585 PF00886 Ribosomal protein S16 D3093_07590 PF02978 Signal peptide binding domain D3093_07590 PF02881 SRP54-type protein, helical bundle domain D3093_07590 PF00448 SRP54-type protein, GTPase domain D3093_07615 PF03707 Bacterial signalling protein N terminal repeat D3093_07615 PF00990 Diguanylate cyclase, GGDEF domain D3093_07615 PF00563 EAL domain D3093_07625 PF14602 Hexapeptide repeat of succinyl-transferase D3093_07625 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D3093_07625 PF00132 Bacterial transferase hexapeptide (six repeats) D3093_07630 PF07687 Peptidase dimerisation domain D3093_07630 PF01546 Peptidase family M20/M25/M40 D3093_07640 PF02277 Phosphoribosyltransferase D3093_07645 PF02654 Cobalamin-5-phosphate synthase D3093_07660 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D3093_07660 PF00132 Bacterial transferase hexapeptide (six repeats) D3093_07670 PF00005 ABC transporter D3093_07675 PF00512 His Kinase A (phospho-acceptor) domain D3093_07675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_07680 PF00072 Response regulator receiver domain D3093_07680 PF02954 Bacterial regulatory protein, Fis family D3093_07685 PF00892 EamA-like transporter family D3093_07705 PF13614 AAA domain D3093_07705 PF13807 G-rich domain on putative tyrosine kinase D3093_07705 PF02706 Chain length determinant protein D3093_07715 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D3093_07715 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D3093_07715 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D3093_07720 PF01370 NAD dependent epimerase/dehydratase family D3093_07725 PF01370 NAD dependent epimerase/dehydratase family D3093_07740 PF13439 Glycosyltransferase Family 4 D3093_07740 PF00534 Glycosyl transferases group 1 D3093_07770 PF00535 Glycosyl transferase family 2 D3093_07780 PF00468 Ribosomal protein L34 D3093_07785 PF00825 Ribonuclease P D3093_07790 PF01809 Putative membrane protein insertion efficiency factor D3093_07795 PF14849 YidC periplasmic domain D3093_07795 PF02096 60Kd inner membrane protein D3093_07800 PF01926 50S ribosome-binding GTPase D3093_07815 PF00696 Amino acid kinase family D3093_07825 PF01544 CorA-like Mg2+ transporter protein D3093_07840 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D3093_07855 PF01274 Malate synthase D3093_07860 PF00589 Phage integrase family D3093_07860 PF02899 Phage integrase, N-terminal SAM-like domain D3093_07875 PF01202 Shikimate kinase D3093_07880 PF01761 3-dehydroquinate synthase D3093_07885 PF00571 CBS domain D3093_07900 PF01722 BolA-like protein D3093_07905 PF00226 DnaJ domain D3093_07910 PF08406 CbbQ/NirQ/NorQ C-terminal D3093_07910 PF07728 AAA domain (dynein-related subfamily) D3093_07910 PF12556 Cobaltochelatase CobS subunit N terminal D3093_07920 PF06213 Cobalamin biosynthesis protein CobT D3093_07920 PF11775 Cobalamin biosynthesis protein CobT VWA domain D3093_07935 PF05726 Pirin C-terminal cupin domain D3093_07935 PF02678 Pirin D3093_07940 PF00528 Binding-protein-dependent transport system inner membrane component D3093_07950 PF00072 Response regulator receiver domain D3093_07950 PF00990 Diguanylate cyclase, GGDEF domain D3093_07955 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D3093_07960 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D3093_07970 PF01266 FAD dependent oxidoreductase D3093_07975 PF02423 Ornithine cyclodeaminase/mu-crystallin family D3093_07985 PF00216 Bacterial DNA-binding protein D3093_07995 PF00575 S1 RNA binding domain D3093_08000 PF02224 Cytidylate kinase D3093_08005 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D3093_08030 PF05726 Pirin C-terminal cupin domain D3093_08030 PF02678 Pirin D3093_08035 PF03453 MoeA N-terminal region (domain I and II) D3093_08035 PF00994 Probable molybdopterin binding domain D3093_08035 PF03454 MoeA C-terminal region (domain IV) D3093_08045 PF00990 Diguanylate cyclase, GGDEF domain D3093_08045 PF00072 Response regulator receiver domain D3093_08050 PF00072 Response regulator receiver domain D3093_08050 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_08050 PF01627 Hpt domain D3093_08050 PF00512 His Kinase A (phospho-acceptor) domain D3093_08050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_08050 PF00672 HAMP domain D3093_08055 PF00672 HAMP domain D3093_08055 PF17149 Periplasmic sensor domain found in signal transduction proteins D3093_08055 PF01627 Hpt domain D3093_08055 PF00072 Response regulator receiver domain D3093_08055 PF00512 His Kinase A (phospho-acceptor) domain D3093_08055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_08060 PF00535 Glycosyl transferase family 2 D3093_08070 PF00011 Hsp20/alpha crystallin family D3093_08095 PF01757 Acyltransferase family D3093_08100 PF00694 Aconitase C-terminal domain D3093_08100 PF00330 Aconitase family (aconitate hydratase) D3093_08130 PF00535 Glycosyl transferase family 2 D3093_08140 PF01593 Flavin containing amine oxidoreductase D3093_08145 PF01593 Flavin containing amine oxidoreductase D3093_08150 PF00171 Aldehyde dehydrogenase family D3093_08160 PF01008 Initiation factor 2 subunit family D3093_08165 PF07568 Histidine kinase D3093_08165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_08165 PF12282 Signal transduction histidine kinase D3093_08180 PF00474 Sodium:solute symporter family D3093_08185 PF04341 Protein of unknown function, DUF485 D3093_08200 PF00795 Carbon-nitrogen hydrolase D3093_08205 PF00462 Glutaredoxin D3093_08210 PF00156 Phosphoribosyl transferase domain D3093_08215 PF01313 Bacterial export proteins, family 3 D3093_08240 PF03186 CobD/Cbib protein D3093_08245 PF00271 Helicase conserved C-terminal domain D3093_08245 PF00270 DEAD/DEAH box helicase D3093_08250 PF01741 Large-conductance mechanosensitive channel, MscL D3093_08255 PF07516 SecA Wing and Scaffold domain D3093_08255 PF01043 SecA preprotein cross-linking domain D3093_08255 PF07517 SecA DEAD-like domain D3093_08255 PF02810 SEC-C motif D3093_08265 PF01960 ArgJ family D3093_08275 PF00293 NUDIX domain D3093_08280 PF00570 HRDC domain D3093_08280 PF09382 RQC domain D3093_08280 PF00270 DEAD/DEAH box helicase D3093_08280 PF16124 RecQ zinc-binding D3093_08280 PF00271 Helicase conserved C-terminal domain D3093_08305 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_08315 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_08320 PF00691 OmpA family D3093_08345 PF00296 Luciferase-like monooxygenase D3093_08355 PF01641 SelR domain D3093_08360 PF01738 Dienelactone hydrolase family D3093_08365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3093_08365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3093_08365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3093_08365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3093_08370 PF00313 'Cold-shock' DNA-binding domain D3093_08400 PF01227 GTP cyclohydrolase I D3093_08405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_08405 PF00512 His Kinase A (phospho-acceptor) domain D3093_08405 PF00989 PAS fold D3093_08435 PF02875 Mur ligase family, glutamate ligase domain D3093_08435 PF08245 Mur ligase middle domain D3093_08440 PF17848 Acetyl-coA carboxylase zinc finger domain D3093_08440 PF01039 Carboxyl transferase domain D3093_08445 PF00290 Tryptophan synthase alpha chain D3093_08450 PF00291 Pyridoxal-phosphate dependent enzyme D3093_08455 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_08460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_08460 PF00512 His Kinase A (phospho-acceptor) domain D3093_08460 PF01627 Hpt domain D3093_08460 PF00072 Response regulator receiver domain D3093_08460 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_08460 PF00672 HAMP domain D3093_08465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_08465 PF00512 His Kinase A (phospho-acceptor) domain D3093_08470 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_08475 PF02371 Transposase IS116/IS110/IS902 family D3093_08475 PF01548 Transposase D3093_08480 PF00672 HAMP domain D3093_08480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_08480 PF00512 His Kinase A (phospho-acceptor) domain D3093_08485 PF00486 Transcriptional regulatory protein, C terminal D3093_08485 PF00072 Response regulator receiver domain D3093_08495 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_08505 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D3093_08515 PF12804 MobA-like NTP transferase domain D3093_08520 PF12705 PD-(D/E)XK nuclease superfamily D3093_08525 PF12705 PD-(D/E)XK nuclease superfamily D3093_08525 PF00580 UvrD/REP helicase N-terminal domain D3093_08525 PF13361 UvrD-like helicase C-terminal domain D3093_08530 PF00085 Thioredoxin D3093_08535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_08535 PF03466 LysR substrate binding domain D3093_08550 PF01451 Low molecular weight phosphotyrosine protein phosphatase D3093_08555 PF02146 Sir2 family D3093_08560 PF03167 Uracil DNA glycosylase superfamily D3093_08575 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D3093_08575 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D3093_08580 PF01544 CorA-like Mg2+ transporter protein D3093_08585 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D3093_08585 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D3093_08590 PF02594 Uncharacterised ACR, YggU family COG1872 D3093_08595 PF02325 YGGT family D3093_08610 PF04471 Restriction endonuclease D3093_08610 PF14338 Mrr N-terminal domain D3093_08625 PF11867 Domain of unknown function (DUF3387) D3093_08625 PF18766 SWI2/SNF2 ATPase D3093_08625 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D3093_08665 PF02796 Helix-turn-helix domain of resolvase D3093_08665 PF00239 Resolvase, N terminal domain D3093_08735 PF14490 Helix-hairpin-helix containing domain D3093_08735 PF13538 UvrD-like helicase C-terminal domain D3093_08735 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain D3093_08740 PF00669 Bacterial flagellin N-terminal helical region D3093_08740 PF00700 Bacterial flagellin C-terminal helical region D3093_08785 PF00239 Resolvase, N terminal domain D3093_08785 PF02796 Helix-turn-helix domain of resolvase D3093_08800 PF03379 CcmB protein D3093_08805 PF00005 ABC transporter D3093_08810 PF06826 Predicted Permease Membrane Region D3093_08810 PF02080 TrkA-C domain D3093_08815 PF02080 TrkA-C domain D3093_08815 PF06826 Predicted Permease Membrane Region D3093_08820 PF00005 ABC transporter D3093_08825 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_08830 PF00528 Binding-protein-dependent transport system inner membrane component D3093_08835 PF00528 Binding-protein-dependent transport system inner membrane component D3093_08845 PF01578 Cytochrome C assembly protein D3093_08855 PF03100 CcmE D3093_08860 PF01578 Cytochrome C assembly protein D3093_08860 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D3093_08865 PF08534 Redoxin D3093_08870 PF03918 Cytochrome C biogenesis protein D3093_08880 PF00892 EamA-like transporter family D3093_08885 PF06803 Protein of unknown function (DUF1232) D3093_08890 PF00581 Rhodanese-like domain D3093_08900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_08900 PF00672 HAMP domain D3093_08900 PF12729 Four helix bundle sensory module for signal transduction D3093_08905 PF00764 Arginosuccinate synthase D3093_08920 PF04055 Radical SAM superfamily D3093_08930 PF04545 Sigma-70, region 4 D3093_08930 PF04542 Sigma-70 region 2 D3093_08935 PF12973 ChrR Cupin-like domain D3093_08950 PF06445 GyrI-like small molecule binding domain D3093_08960 PF00909 Ammonium Transporter Family D3093_08965 PF00483 Nucleotidyl transferase D3093_08970 PF08323 Starch synthase catalytic domain D3093_08970 PF00534 Glycosyl transferases group 1 D3093_08975 PF00679 Elongation factor G C-terminus D3093_08975 PF06421 GTP-binding protein LepA C-terminus D3093_08975 PF03144 Elongation factor Tu domain 2 D3093_08975 PF00009 Elongation factor Tu GTP binding domain D3093_08985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_08985 PF03466 LysR substrate binding domain D3093_08995 PF11849 Domain of unknown function (DUF3369) D3093_09005 PF01588 Putative tRNA binding domain D3093_09005 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D3093_09005 PF03484 tRNA synthetase B5 domain D3093_09005 PF03147 Ferredoxin-fold anticodon binding domain D3093_09005 PF03483 B3/4 domain D3093_09010 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D3093_09010 PF01409 tRNA synthetases class II core domain (F) D3093_09015 PF00453 Ribosomal protein L20 D3093_09020 PF01632 Ribosomal protein L35 D3093_09040 PF02743 Cache domain D3093_09040 PF00672 HAMP domain D3093_09040 PF00211 Adenylate and Guanylate cyclase catalytic domain D3093_09045 PF00140 Sigma-70 factor, region 1.2 D3093_09045 PF04542 Sigma-70 region 2 D3093_09045 PF04545 Sigma-70, region 4 D3093_09060 PF00037 4Fe-4S binding domain D3093_09060 PF11953 Domain of unknown function (DUF3470) D3093_09065 PF03466 LysR substrate binding domain D3093_09065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_09070 PF06779 Uncharacterised MFS-type transporter YbfB D3093_09085 PF03741 Integral membrane protein TerC family D3093_09085 PF03471 Transporter associated domain D3093_09090 PF01479 S4 domain D3093_09105 PF00183 Hsp90 protein D3093_09110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_09110 PF00512 His Kinase A (phospho-acceptor) domain D3093_09110 PF00989 PAS fold D3093_09120 PF01475 Ferric uptake regulator family D3093_09145 PF01297 Zinc-uptake complex component A periplasmic D3093_09150 PF00005 ABC transporter D3093_09155 PF00950 ABC 3 transport family D3093_09160 PF00950 ABC 3 transport family D3093_09165 PF00672 HAMP domain D3093_09165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_09165 PF00512 His Kinase A (phospho-acceptor) domain D3093_09165 PF01627 Hpt domain D3093_09165 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_09165 PF00072 Response regulator receiver domain D3093_09170 PF00313 'Cold-shock' DNA-binding domain D3093_09175 PF00072 Response regulator receiver domain D3093_09175 PF00158 Sigma-54 interaction domain D3093_09175 PF02954 Bacterial regulatory protein, Fis family D3093_09180 PF04127 DNA / pantothenate metabolism flavoprotein D3093_09180 PF02441 Flavoprotein D3093_09185 PF00692 dUTPase D3093_09190 PF02082 Transcriptional regulator D3093_09195 PF00291 Pyridoxal-phosphate dependent enzyme D3093_09205 PF00899 ThiF family D3093_09220 PF00486 Transcriptional regulatory protein, C terminal D3093_09220 PF00072 Response regulator receiver domain D3093_09225 PF01895 PhoU domain D3093_09230 PF00005 ABC transporter D3093_09235 PF00528 Binding-protein-dependent transport system inner membrane component D3093_09240 PF00528 Binding-protein-dependent transport system inner membrane component D3093_09245 PF12849 PBP superfamily domain D3093_09265 PF16736 Single Cache-like D3093_09265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_09265 PF00512 His Kinase A (phospho-acceptor) domain D3093_09265 PF00989 PAS fold D3093_09270 PF00390 Malic enzyme, N-terminal domain D3093_09270 PF03949 Malic enzyme, NAD binding domain D3093_09270 PF01515 Phosphate acetyl/butaryl transferase D3093_09280 PF13545 Crp-like helix-turn-helix domain D3093_09280 PF00027 Cyclic nucleotide-binding domain D3093_09285 PF03597 Cytochrome oxidase maturation protein cbb3-type D3093_09290 PF00403 Heavy-metal-associated domain D3093_09300 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase D3093_09300 PF12801 4Fe-4S binding domain D3093_09300 PF13746 4Fe-4S dicluster domain D3093_09305 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP D3093_09305 PF00034 Cytochrome c D3093_09305 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3093_09320 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3093_09330 PF17785 PUA-like domain D3093_09330 PF10672 S-adenosylmethionine-dependent methyltransferase D3093_09335 PF05958 tRNA (Uracil-5-)-methyltransferase D3093_09340 PF10518 TAT (twin-arginine translocation) pathway signal sequence D3093_09340 PF07732 Multicopper oxidase D3093_09340 PF00394 Multicopper oxidase D3093_09340 PF07731 Multicopper oxidase D3093_09355 PF00528 Binding-protein-dependent transport system inner membrane component D3093_09360 PF00528 Binding-protein-dependent transport system inner membrane component D3093_09375 PF05425 Copper resistance protein D D3093_09380 PF00005 ABC transporter D3093_09380 PF08402 TOBE domain D3093_09385 PF13416 Bacterial extracellular solute-binding protein D3093_09390 PF00308 Bacterial dnaA protein D3093_09390 PF08299 Bacterial dnaA protein helix-turn-helix D3093_09390 PF11638 DnaA N-terminal domain D3093_09395 PF01649 Ribosomal protein S20 D3093_09400 PF00378 Enoyl-CoA hydratase/isomerase D3093_09410 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D3093_09410 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D3093_09425 PF01209 ubiE/COQ5 methyltransferase family D3093_09430 PF03109 ABC1 family D3093_09440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_09445 PF00719 Inorganic pyrophosphatase D3093_09450 PF00056 lactate/malate dehydrogenase, NAD binding domain D3093_09450 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D3093_09455 PF00583 Acetyltransferase (GNAT) family D3093_09455 PF13607 Succinyl-CoA ligase like flavodoxin domain D3093_09455 PF13380 CoA binding domain D3093_09465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3093_09465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3093_09480 PF02915 Rubrerythrin D3093_09495 PF03009 Glycerophosphoryl diester phosphodiesterase family D3093_09500 PF12544 Lysine-2,3-aminomutase D3093_09500 PF04055 Radical SAM superfamily D3093_09510 PF04228 Putative neutral zinc metallopeptidase D3093_09520 PF00013 KH domain D3093_09520 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D3093_09520 PF01138 3' exoribonuclease family, domain 1 D3093_09520 PF03725 3' exoribonuclease family, domain 2 D3093_09520 PF00575 S1 RNA binding domain D3093_09525 PF00312 Ribosomal protein S15 D3093_09530 PF01509 TruB family pseudouridylate synthase (N terminal domain) D3093_09530 PF16198 tRNA pseudouridylate synthase B C-terminal domain D3093_09535 PF02033 Ribosome-binding factor A D3093_09540 PF04760 Translation initiation factor IF-2, N-terminal region D3093_09540 PF08364 Bacterial translation initiation factor IF-2 associated region D3093_09540 PF00009 Elongation factor Tu GTP binding domain D3093_09540 PF11987 Translation-initiation factor 2 D3093_09540 PF03144 Elongation factor Tu domain 2 D3093_09550 PF13184 NusA-like KH domain D3093_09550 PF00575 S1 RNA binding domain D3093_09550 PF08529 NusA N-terminal domain D3093_09555 PF02576 RimP N-terminal domain D3093_09555 PF17384 RimP C-terminal SH3 domain D3093_09560 PF03992 Antibiotic biosynthesis monooxygenase D3093_09565 PF02390 Putative methyltransferase D3093_09570 PF00438 S-adenosylmethionine synthetase, N-terminal domain D3093_09570 PF02773 S-adenosylmethionine synthetase, C-terminal domain D3093_09570 PF02772 S-adenosylmethionine synthetase, central domain D3093_09575 PF01381 Helix-turn-helix D3093_09580 PF00795 Carbon-nitrogen hydrolase D3093_09585 PF03471 Transporter associated domain D3093_09585 PF00571 CBS domain D3093_09590 PF02130 Uncharacterized protein family UPF0054 D3093_09595 PF02562 PhoH-like protein D3093_09600 PF01938 TRAM domain D3093_09600 PF04055 Radical SAM superfamily D3093_09600 PF00919 Uncharacterized protein family UPF0004 D3093_09615 PF05443 ROS/MUCR transcriptional regulator protein D3093_09630 PF00814 Glycoprotease family D3093_09635 PF01427 D-ala-D-ala dipeptidase D3093_09645 PF01106 NifU-like domain D3093_09650 PF00672 HAMP domain D3093_09650 PF00211 Adenylate and Guanylate cyclase catalytic domain D3093_09670 PF01925 Sulfite exporter TauE/SafE D3093_09675 PF00294 pfkB family carbohydrate kinase D3093_09690 PF00633 Helix-hairpin-helix motif D3093_09690 PF10576 Iron-sulfur binding domain of endonuclease III D3093_09690 PF00730 HhH-GPD superfamily base excision DNA repair protein D3093_09700 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D3093_09700 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D3093_09705 PF05173 Dihydrodipicolinate reductase, C-terminus D3093_09705 PF01113 Dihydrodipicolinate reductase, N-terminus D3093_09710 PF01297 Zinc-uptake complex component A periplasmic D3093_09715 PF00005 ABC transporter D3093_09720 PF00950 ABC 3 transport family D3093_09735 PF00672 HAMP domain D3093_09735 PF16591 Helical bimodular sensor domain D3093_09735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_09740 PF02754 Cysteine-rich domain D3093_09745 PF02589 LUD domain D3093_09745 PF13183 4Fe-4S dicluster domain D3093_09745 PF11870 Domain of unknown function (DUF3390) D3093_09750 PF02589 LUD domain D3093_09765 PF13188 PAS domain D3093_09765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_09765 PF13426 PAS domain D3093_09765 PF00989 PAS fold D3093_09765 PF00512 His Kinase A (phospho-acceptor) domain D3093_09775 PF00004 ATPase family associated with various cellular activities (AAA) D3093_09775 PF07724 AAA domain (Cdc48 subfamily) D3093_09775 PF10431 C-terminal, D2-small domain, of ClpB protein D3093_09780 PF00227 Proteasome subunit D3093_09790 PF00475 Imidazoleglycerol-phosphate dehydratase D3093_09795 PF00117 Glutamine amidotransferase class-I D3093_09800 PF00583 Acetyltransferase (GNAT) family D3093_09805 PF00977 Histidine biosynthesis protein D3093_09810 PF00977 Histidine biosynthesis protein D3093_09815 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D3093_09820 PF01230 HIT domain D3093_09830 PF03562 MltA specific insert domain D3093_09830 PF06725 3D domain D3093_09835 PF04280 Tim44-like domain D3093_09840 PF04186 FxsA cytoplasmic membrane protein D3093_09845 PF02556 Preprotein translocase subunit SecB D3093_09850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3093_09850 PF07498 Rho termination factor, N-terminal domain D3093_09850 PF07497 Rho termination factor, RNA-binding domain D3093_09855 PF00690 Cation transporter/ATPase, N-terminus D3093_09855 PF00689 Cation transporting ATPase, C-terminus D3093_09865 PF01208 Uroporphyrinogen decarboxylase (URO-D) D3093_09870 PF03618 Kinase/pyrophosphorylase D3093_09875 PF02545 Maf-like protein D3093_09880 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D3093_09880 PF01488 Shikimate / quinate 5-dehydrogenase D3093_09880 PF08501 Shikimate dehydrogenase substrate binding domain D3093_09885 PF01121 Dephospho-CoA kinase D3093_09890 PF00929 Exonuclease D3093_09895 PF08240 Alcohol dehydrogenase GroES-like domain D3093_09895 PF00107 Zinc-binding dehydrogenase D3093_09900 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D3093_09900 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D3093_09920 PF12631 MnmE helical domain D3093_09920 PF01926 50S ribosome-binding GTPase D3093_09920 PF10396 GTP-binding protein TrmE N-terminus D3093_09925 PF01134 Glucose inhibited division protein A D3093_09925 PF13932 GidA associated domain D3093_09930 PF02527 rRNA small subunit methyltransferase G D3093_09935 PF13614 AAA domain D3093_09940 PF17762 HTH domain found in ParB protein D3093_09940 PF02195 ParB-like nuclease domain D3093_09960 PF08264 Anticodon-binding domain of tRNA D3093_09960 PF00133 tRNA synthetases class I (I, L, M and V) D3093_09960 PF13603 Leucyl-tRNA synthetase, Domain 2 D3093_10000 PF00925 GTP cyclohydrolase II D3093_10005 PF00486 Transcriptional regulatory protein, C terminal D3093_10005 PF00072 Response regulator receiver domain D3093_10015 PF07995 Glucose / Sorbosone dehydrogenase D3093_10025 PF12706 Beta-lactamase superfamily domain D3093_10035 PF12911 N-terminal TM domain of oligopeptide transport permease C D3093_10035 PF00528 Binding-protein-dependent transport system inner membrane component D3093_10040 PF00528 Binding-protein-dependent transport system inner membrane component D3093_10050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_10050 PF00005 ABC transporter D3093_10070 PF13302 Acetyltransferase (GNAT) domain D3093_10070 PF00027 Cyclic nucleotide-binding domain D3093_10075 PF00664 ABC transporter transmembrane region D3093_10075 PF00005 ABC transporter D3093_10085 PF00534 Glycosyl transferases group 1 D3093_10085 PF13439 Glycosyltransferase Family 4 D3093_10090 PF00072 Response regulator receiver domain D3093_10090 PF00990 Diguanylate cyclase, GGDEF domain D3093_10095 PF00534 Glycosyl transferases group 1 D3093_10095 PF13439 Glycosyltransferase Family 4 D3093_10100 PF00300 Histidine phosphatase superfamily (branch 1) D3093_10110 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3093_10115 PF12802 MarR family D3093_10120 PF07722 Peptidase C26 D3093_10125 PF02675 S-adenosylmethionine decarboxylase D3093_10130 PF17284 Spermidine synthase tetramerisation domain D3093_10150 PF00440 Bacterial regulatory proteins, tetR family D3093_10155 PF00132 Bacterial transferase hexapeptide (six repeats) D3093_10170 PF02810 SEC-C motif D3093_10180 PF01470 Pyroglutamyl peptidase D3093_10185 PF00579 tRNA synthetases class I (W and Y) D3093_10190 PF03023 Lipid II flippase MurJ D3093_10195 PF00512 His Kinase A (phospho-acceptor) domain D3093_10195 PF09308 LuxQ, periplasmic D3093_10195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_10195 PF00072 Response regulator receiver domain D3093_10200 PF13458 Periplasmic binding protein D3093_10220 PF01909 Nucleotidyltransferase domain D3093_10220 PF08335 GlnD PII-uridylyltransferase D3093_10220 PF01966 HD domain D3093_10235 PF01624 MutS domain I D3093_10235 PF00488 MutS domain V D3093_10235 PF05190 MutS family domain IV D3093_10235 PF05188 MutS domain II D3093_10235 PF05192 MutS domain III D3093_10245 PF01740 STAS domain D3093_10250 PF01053 Cys/Met metabolism PLP-dependent enzyme D3093_10265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3093_10270 PF02021 Uncharacterised protein family UPF0102 D3093_10275 PF13369 Transglutaminase-like superfamily D3093_10280 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain D3093_10280 PF02951 Prokaryotic glutathione synthetase, N-terminal domain D3093_10295 PF00186 Dihydrofolate reductase D3093_10300 PF00672 HAMP domain D3093_10300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_10300 PF00672 HAMP domain D3093_10300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_10305 PF06969 HemN C-terminal domain D3093_10305 PF04055 Radical SAM superfamily D3093_10310 PF01725 Ham1 family D3093_10315 PF03725 3' exoribonuclease family, domain 2 D3093_10315 PF01138 3' exoribonuclease family, domain 1 D3093_10320 PF01628 HrcA protein C terminal domain D3093_10325 PF01025 GrpE D3093_10330 PF00072 Response regulator receiver domain D3093_10350 PF00012 Hsp70 protein D3093_10355 PF00226 DnaJ domain D3093_10355 PF00684 DnaJ central domain D3093_10355 PF01556 DnaJ C terminal domain D3093_10360 PF17151 Periplasmic sensor domain D3093_10360 PF00990 Diguanylate cyclase, GGDEF domain D3093_10365 PF02687 FtsX-like permease family D3093_10365 PF12704 MacB-like periplasmic core domain D3093_10365 PF00005 ABC transporter D3093_10370 PF00005 ABC transporter D3093_10375 PF13472 GDSL-like Lipase/Acylhydrolase family D3093_10380 PF08495 FIST N domain D3093_10380 PF10442 FIST C domain D3093_10385 PF00248 Aldo/keto reductase family D3093_10390 PF02834 LigT like Phosphoesterase D3093_10395 PF01494 FAD binding domain D3093_10400 PF00543 Nitrogen regulatory protein P-II D3093_10410 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D3093_10410 PF17854 FtsK alpha domain D3093_10410 PF01580 FtsK/SpoIIIE family D3093_10430 PF01078 Magnesium chelatase, subunit ChlI D3093_10430 PF13335 Magnesium chelatase, subunit ChlI C-terminal D3093_10435 PF02633 Creatinine amidohydrolase D3093_10440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_10445 PF00528 Binding-protein-dependent transport system inner membrane component D3093_10455 PF00156 Phosphoribosyl transferase domain D3093_10475 PF05974 Domain of unknown function (DUF892) D3093_10495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3093_10500 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase D3093_10500 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg D3093_10500 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II D3093_10505 PF00174 Oxidoreductase molybdopterin binding domain D3093_10510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_10510 PF00512 His Kinase A (phospho-acceptor) domain D3093_10510 PF00989 PAS fold D3093_10515 PF01965 DJ-1/PfpI family D3093_10520 PF00463 Isocitrate lyase family D3093_10525 PF09856 Predicted transcriptional regulator (DUF2083) D3093_10525 PF06114 IrrE N-terminal-like domain D3093_10525 PF01381 Helix-turn-helix D3093_10530 PF00970 Oxidoreductase FAD-binding domain D3093_10530 PF00175 Oxidoreductase NAD-binding domain D3093_10540 PF00156 Phosphoribosyl transferase domain D3093_10545 PF11849 Domain of unknown function (DUF3369) D3093_10550 PF00924 Mechanosensitive ion channel D3093_10555 PF00005 ABC transporter D3093_10555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_10585 PF02628 Cytochrome oxidase assembly protein D3093_10590 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_10595 PF00959 Phage lysozyme D3093_10600 PF06233 Usg-like family D3093_10605 PF00166 Chaperonin 10 Kd subunit D3093_10610 PF00118 TCP-1/cpn60 chaperonin family D3093_10615 PF06628 Catalase-related immune-responsive D3093_10615 PF00199 Catalase D3093_10620 PF00034 Cytochrome c D3093_10620 PF03150 Di-haem cytochrome c peroxidase D3093_10625 PF03264 NapC/NirT cytochrome c family, N-terminal region D3093_10635 PF01593 Flavin containing amine oxidoreductase D3093_10645 PF00912 Transglycosylase D3093_10645 PF00905 Penicillin binding protein transpeptidase domain D3093_10655 PF00158 Sigma-54 interaction domain D3093_10655 PF02954 Bacterial regulatory protein, Fis family D3093_10660 PF04012 PspA/IM30 family D3093_10665 PF06667 Phage shock protein B D3093_10675 PF11849 Domain of unknown function (DUF3369) D3093_10685 PF01569 PAP2 superfamily D3093_10720 PF03707 Bacterial signalling protein N terminal repeat D3093_10720 PF00990 Diguanylate cyclase, GGDEF domain D3093_10720 PF00563 EAL domain D3093_10740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_10745 PF00528 Binding-protein-dependent transport system inner membrane component D3093_10755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_10755 PF00005 ABC transporter D3093_10760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_10760 PF00005 ABC transporter D3093_10775 PF04073 Aminoacyl-tRNA editing domain D3093_10785 PF01227 GTP cyclohydrolase I D3093_10790 PF04379 ApaG domain D3093_10815 PF00005 ABC transporter D3093_10820 PF00528 Binding-protein-dependent transport system inner membrane component D3093_10835 PF08448 PAS fold D3093_10835 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB D3093_10835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_10835 PF00672 HAMP domain D3093_10835 PF00512 His Kinase A (phospho-acceptor) domain D3093_10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_10840 PF13188 PAS domain D3093_10840 PF00072 Response regulator receiver domain D3093_10840 PF08448 PAS fold D3093_10840 PF00512 His Kinase A (phospho-acceptor) domain D3093_10850 PF07722 Peptidase C26 D3093_10855 PF00512 His Kinase A (phospho-acceptor) domain D3093_10855 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_10855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_10865 PF13091 PLD-like domain D3093_10865 PF13396 Phospholipase_D-nuclease N-terminal D3093_10870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_10875 PF13488 Glycine zipper D3093_10875 PF00691 OmpA family D3093_10905 PF00595 PDZ domain D3093_10905 PF13180 PDZ domain D3093_10935 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D3093_10935 PF03900 Porphobilinogen deaminase, C-terminal domain D3093_10940 PF08241 Methyltransferase domain D3093_10945 PF00814 Glycoprotease family D3093_10955 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D3093_10955 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D3093_10960 PF03795 YCII-related domain D3093_10975 PF16177 Acetyl-coenzyme A synthetase N-terminus D3093_10975 PF00501 AMP-binding enzyme D3093_10975 PF13193 AMP-binding enzyme C-terminal domain D3093_10990 PF07896 Protein of unknown function (DUF1674) D3093_10995 PF01435 Peptidase family M48 D3093_11010 PF01189 16S rRNA methyltransferase RsmB/F D3093_11010 PF01029 NusB family D3093_11020 PF01808 AICARFT/IMPCHase bienzyme D3093_11020 PF02142 MGS-like domain D3093_11045 PF05088 Bacterial NAD-glutamate dehydrogenase D3093_11050 PF00672 HAMP domain D3093_11050 PF01966 HD domain D3093_11060 PF00672 HAMP domain D3093_11060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_11075 PF03737 Aldolase/RraA D3093_11090 PF00085 Thioredoxin D3093_11095 PF02190 ATP-dependent protease La (LON) substrate-binding domain D3093_11095 PF00004 ATPase family associated with various cellular activities (AAA) D3093_11095 PF05362 Lon protease (S16) C-terminal proteolytic domain D3093_11100 PF03966 Trm112p-like protein D3093_11130 PF01548 Transposase D3093_11130 PF02371 Transposase IS116/IS110/IS902 family D3093_11135 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D3093_11135 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D3093_11140 PF02308 MgtC family D3093_11145 PF07690 Major Facilitator Superfamily D3093_11155 PF00072 Response regulator receiver domain D3093_11155 PF09456 RcsC Alpha-Beta-Loop (ABL) D3093_11155 PF00512 His Kinase A (phospho-acceptor) domain D3093_11155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_11175 PF13416 Bacterial extracellular solute-binding protein D3093_11180 PF00528 Binding-protein-dependent transport system inner membrane component D3093_11185 PF00528 Binding-protein-dependent transport system inner membrane component D3093_11190 PF08402 TOBE domain D3093_11190 PF00005 ABC transporter D3093_11195 PF02798 Glutathione S-transferase, N-terminal domain D3093_11195 PF00043 Glutathione S-transferase, C-terminal domain D3093_11210 PF00270 DEAD/DEAH box helicase D3093_11210 PF00271 Helicase conserved C-terminal domain D3093_11215 PF01475 Ferric uptake regulator family D3093_11230 PF00512 His Kinase A (phospho-acceptor) domain D3093_11230 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_11230 PF00072 Response regulator receiver domain D3093_11230 PF00672 HAMP domain D3093_11230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_11230 PF01627 Hpt domain D3093_11235 PF00512 His Kinase A (phospho-acceptor) domain D3093_11235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_11240 PF01740 STAS domain D3093_11250 PF00486 Transcriptional regulatory protein, C terminal D3093_11250 PF00072 Response regulator receiver domain D3093_11270 PF00486 Transcriptional regulatory protein, C terminal D3093_11270 PF00072 Response regulator receiver domain D3093_11275 PF00990 Diguanylate cyclase, GGDEF domain D3093_11275 PF00072 Response regulator receiver domain D3093_11285 PF01740 STAS domain D3093_11290 PF00672 HAMP domain D3093_11290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_11290 PF02743 Cache domain D3093_11295 PF00072 Response regulator receiver domain D3093_11295 PF01339 CheB methylesterase D3093_11300 PF03975 CheD chemotactic sensory transduction D3093_11305 PF01739 CheR methyltransferase, SAM binding domain D3093_11305 PF03705 CheR methyltransferase, all-alpha domain D3093_11310 PF00672 HAMP domain D3093_11310 PF02203 Tar ligand binding domain homologue D3093_11310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_11315 PF01584 CheW-like domain D3093_11320 PF01627 Hpt domain D3093_11320 PF02895 Signal transducing histidine kinase, homodimeric domain D3093_11320 PF01584 CheW-like domain D3093_11320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_11325 PF00072 Response regulator receiver domain D3093_11335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_11335 PF00512 His Kinase A (phospho-acceptor) domain D3093_11335 PF00989 PAS fold D3093_11335 PF16736 Single Cache-like D3093_11345 PF00929 Exonuclease D3093_11350 PF00486 Transcriptional regulatory protein, C terminal D3093_11350 PF00072 Response regulator receiver domain D3093_11365 PF04279 Intracellular septation protein A D3093_11375 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus D3093_11375 PF01048 Phosphorylase superfamily D3093_11380 PF00448 SRP54-type protein, GTPase domain D3093_11380 PF02881 SRP54-type protein, helical bundle domain D3093_11385 PF00919 Uncharacterized protein family UPF0004 D3093_11385 PF04055 Radical SAM superfamily D3093_11390 PF01678 Diaminopimelate epimerase D3093_11415 PF00694 Aconitase C-terminal domain D3093_11420 PF00180 Isocitrate/isopropylmalate dehydrogenase D3093_11435 PF03328 HpcH/HpaI aldolase/citrate lyase family D3093_11440 PF08543 Phosphomethylpyrimidine kinase D3093_11445 PF03641 Possible lysine decarboxylase D3093_11455 PF03969 AFG1-like ATPase D3093_11460 PF00990 Diguanylate cyclase, GGDEF domain D3093_11465 PF13426 PAS domain D3093_11465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_11465 PF13188 PAS domain D3093_11465 PF00512 His Kinase A (phospho-acceptor) domain D3093_11465 PF00989 PAS fold D3093_11470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D3093_11470 PF02817 e3 binding domain D3093_11470 PF00364 Biotin-requiring enzyme D3093_11475 PF00676 Dehydrogenase E1 component D3093_11475 PF16078 2-oxoglutarate dehydrogenase N-terminus D3093_11475 PF02779 Transketolase, pyrimidine binding domain D3093_11475 PF16870 2-oxoglutarate dehydrogenase C-terminal D3093_11480 PF02629 CoA binding domain D3093_11480 PF00549 CoA-ligase D3093_11485 PF00549 CoA-ligase D3093_11485 PF08442 ATP-grasp domain D3093_11490 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D3093_11490 PF00056 lactate/malate dehydrogenase, NAD binding domain D3093_11505 PF01921 tRNA synthetases class I (K) D3093_11510 PF00893 Small Multidrug Resistance protein D3093_11520 PF00912 Transglycosylase D3093_11525 PF13307 Helicase C-terminal domain D3093_11525 PF04851 Type III restriction enzyme, res subunit D3093_11525 PF00929 Exonuclease D3093_11530 PF02743 Cache domain D3093_11530 PF00672 HAMP domain D3093_11530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_11540 PF04204 Homoserine O-succinyltransferase D3093_11560 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3093_11560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3093_11565 PF13673 Acetyltransferase (GNAT) domain D3093_11570 PF01118 Semialdehyde dehydrogenase, NAD binding domain D3093_11570 PF02774 Semialdehyde dehydrogenase, dimerisation domain D3093_11580 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D3093_11590 PF00890 FAD binding domain D3093_11590 PF02910 Fumarate reductase flavoprotein C-term D3093_11595 PF13085 2Fe-2S iron-sulfur cluster binding domain D3093_11595 PF13237 4Fe-4S dicluster domain D3093_11605 PF01063 Amino-transferase class IV D3093_11740 PF03707 Bacterial signalling protein N terminal repeat D3093_11740 PF00990 Diguanylate cyclase, GGDEF domain D3093_11740 PF00563 EAL domain D3093_11775 PF13229 Right handed beta helix region D3093_11775 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D3093_11775 PF12708 Pectate lyase superfamily protein D3093_11805 PF01180 Dihydroorotate dehydrogenase D3093_11815 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D3093_11815 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3093_11815 PF02824 TGS domain D3093_11815 PF03129 Anticodon binding domain D3093_11820 PF00707 Translation initiation factor IF-3, C-terminal domain D3093_11820 PF05198 Translation initiation factor IF-3, N-terminal domain D3093_11825 PF00912 Transglycosylase D3093_11825 PF00905 Penicillin binding protein transpeptidase domain D3093_11850 PF00534 Glycosyl transferases group 1 D3093_11850 PF13477 Glycosyl transferase 4-like D3093_11915 PF02371 Transposase IS116/IS110/IS902 family D3093_11915 PF01548 Transposase D3093_11935 PF09704 CRISPR-associated protein (Cas_Cas5) D3093_11955 PF01867 CRISPR associated protein Cas1 D3093_11960 PF09827 CRISPR associated protein Cas2 D3093_11965 PF01695 IstB-like ATP binding protein D3093_11975 PF00092 von Willebrand factor type A domain D3093_12005 PF00005 ABC transporter D3093_12015 PF03781 Sulfatase-modifying factor enzyme 1 D3093_12060 PF03466 LysR substrate binding domain D3093_12060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_12065 PF02515 CoA-transferase family III D3093_12070 PF00378 Enoyl-CoA hydratase/isomerase D3093_12080 PF01425 Amidase D3093_12090 PF13458 Periplasmic binding protein D3093_12095 PF02653 Branched-chain amino acid transport system / permease component D3093_12100 PF02653 Branched-chain amino acid transport system / permease component D3093_12100 PF11862 Domain of unknown function (DUF3382) D3093_12105 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_12105 PF00005 ABC transporter D3093_12110 PF00005 ABC transporter D3093_12115 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3093_12120 PF09723 Zinc ribbon domain D3093_12125 PF08240 Alcohol dehydrogenase GroES-like domain D3093_12125 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D3093_12130 PF00990 Diguanylate cyclase, GGDEF domain D3093_12130 PF03707 Bacterial signalling protein N terminal repeat D3093_12130 PF00563 EAL domain D3093_12135 PF08028 Acyl-CoA dehydrogenase, C-terminal domain D3093_12145 PF00596 Class II Aldolase and Adducin N-terminal domain D3093_12150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3093_12155 PF00296 Luciferase-like monooxygenase D3093_12160 PF09084 NMT1/THI5 like D3093_12165 PF00005 ABC transporter D3093_12170 PF00528 Binding-protein-dependent transport system inner membrane component D3093_12175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_12175 PF03466 LysR substrate binding domain D3093_12185 PF00881 Nitroreductase family D3093_12220 PF06965 Na+/H+ antiporter 1 D3093_12225 PF00009 Elongation factor Tu GTP binding domain D3093_12225 PF03764 Elongation factor G, domain IV D3093_12225 PF14492 Elongation Factor G, domain II D3093_12225 PF00679 Elongation factor G C-terminus D3093_12230 PF02558 Ketopantoate reductase PanE/ApbA D3093_12230 PF08546 Ketopantoate reductase PanE/ApbA C terminal D3093_12240 PF00210 Ferritin-like domain D3093_12250 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_12265 PF06258 Mitochondrial fission ELM1 D3093_12270 PF01037 Lrp/AsnC ligand binding domain D3093_12280 PF01272 Transcription elongation factor, GreA/GreB, C-term D3093_12280 PF03449 Transcription elongation factor, N-terminal D3093_12285 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D3093_12285 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3093_12285 PF02142 MGS-like domain D3093_12300 PF02308 MgtC family D3093_12310 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D3093_12310 PF17854 FtsK alpha domain D3093_12310 PF09397 Ftsk gamma domain D3093_12310 PF01580 FtsK/SpoIIIE family D3093_12320 PF01625 Peptide methionine sulfoxide reductase D3093_12330 PF00588 SpoU rRNA Methylase family D3093_12330 PF08032 RNA 2'-O ribose methyltransferase substrate binding D3093_12335 PF00106 short chain dehydrogenase D3093_12340 PF09335 SNARE associated Golgi protein D3093_12350 PF00034 Cytochrome c D3093_12355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_12355 PF03459 TOBE domain D3093_12360 PF00171 Aldehyde dehydrogenase family D3093_12370 PF01406 tRNA synthetases class I (C) catalytic domain D3093_12370 PF09190 DALR domain D3093_12375 PF00749 tRNA synthetases class I (E and Q), catalytic domain D3093_12380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3093_12380 PF00205 Thiamine pyrophosphate enzyme, central domain D3093_12380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3093_12390 PF01627 Hpt domain D3093_12390 PF00512 His Kinase A (phospho-acceptor) domain D3093_12390 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_12390 PF00072 Response regulator receiver domain D3093_12390 PF00989 PAS fold D3093_12390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_12400 PF01757 Acyltransferase family D3093_12410 PF00072 Response regulator receiver domain D3093_12410 PF09308 LuxQ, periplasmic D3093_12410 PF00512 His Kinase A (phospho-acceptor) domain D3093_12410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_12420 PF00682 HMGL-like D3093_12420 PF08502 LeuA allosteric (dimerisation) domain D3093_12430 PF04397 LytTr DNA-binding domain D3093_12445 PF01479 S4 domain D3093_12445 PF00163 Ribosomal protein S4/S9 N-terminal domain D3093_12455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3093_12475 PF00462 Glutaredoxin D3093_12485 PF02769 AIR synthase related protein, C-terminal domain D3093_12485 PF00586 AIR synthase related protein, N-terminal domain D3093_12485 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D3093_12495 PF03466 LysR substrate binding domain D3093_12495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_12505 PF03473 MOSC domain D3093_12505 PF03475 3-alpha domain D3093_12510 PF12833 Helix-turn-helix domain D3093_12510 PF00730 HhH-GPD superfamily base excision DNA repair protein D3093_12510 PF02805 Metal binding domain of Ada D3093_12510 PF06029 AlkA N-terminal domain D3093_12515 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase D3093_12520 PF01259 SAICAR synthetase D3093_12545 PF10397 Adenylosuccinate lyase C-terminus D3093_12545 PF00206 Lyase D3093_12550 PF00990 Diguanylate cyclase, GGDEF domain D3093_12550 PF03707 Bacterial signalling protein N terminal repeat D3093_12550 PF00563 EAL domain D3093_12560 PF04002 RadC-like JAB domain D3093_12565 PF00557 Metallopeptidase family M24 D3093_12570 PF17746 SfsA N-terminal OB domain D3093_12570 PF03749 Sugar fermentation stimulation protein RE domain D3093_12575 PF00994 Probable molybdopterin binding domain D3093_12575 PF02464 Competence-damaged protein D3093_12590 PF00210 Ferritin-like domain D3093_12610 PF13393 Histidyl-tRNA synthetase D3093_12610 PF03129 Anticodon binding domain D3093_12615 PF01979 Amidohydrolase family D3093_12620 PF02601 Exonuclease VII, large subunit D3093_12620 PF13742 OB-fold nucleic acid binding domain D3093_12625 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D3093_12625 PF02843 Phosphoribosylglycinamide synthetase, C domain D3093_12625 PF02844 Phosphoribosylglycinamide synthetase, N domain D3093_12640 PF14437 MafB19-like deaminase D3093_12645 PF07311 Dodecin D3093_12650 PF00849 RNA pseudouridylate synthase D3093_12650 PF01479 S4 domain D3093_12665 PF00128 Alpha amylase, catalytic domain D3093_12665 PF16657 Maltogenic Amylase, C-terminal domain D3093_12670 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D3093_12675 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_12680 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3093_12680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3093_12685 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_12690 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_12695 PF02780 Transketolase, C-terminal domain D3093_12695 PF02779 Transketolase, pyrimidine binding domain D3093_12700 PF00456 Transketolase, thiamine diphosphate binding domain D3093_12710 PF03466 LysR substrate binding domain D3093_12710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_12715 PF00440 Bacterial regulatory proteins, tetR family D3093_12740 PF07195 Flagellar hook-associated protein 2 C-terminus D3093_12740 PF02465 Flagellar hook-associated protein 2 N-terminus D3093_12740 PF07196 Flagellin hook IN motif D3093_12745 PF00669 Bacterial flagellin N-terminal helical region D3093_12745 PF00700 Bacterial flagellin C-terminal helical region D3093_12770 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3093_12770 PF07559 Flagellar basal body protein FlaE D3093_12770 PF00460 Flagella basal body rod protein D3093_12775 PF13860 FlgD Ig-like domain D3093_12775 PF03963 Flagellar hook capping protein - N-terminal region D3093_12775 PF13861 FlgD Tudor-like domain D3093_12785 PF01546 Peptidase family M20/M25/M40 D3093_12785 PF07687 Peptidase dimerisation domain D3093_12790 PF00491 Arginase family D3093_12795 PF01042 Endoribonuclease L-PSP D3093_12800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_12800 PF00005 ABC transporter D3093_12810 PF00528 Binding-protein-dependent transport system inner membrane component D3093_12815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_12825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_12825 PF03466 LysR substrate binding domain D3093_12835 PF00106 short chain dehydrogenase D3093_12840 PF04542 Sigma-70 region 2 D3093_12840 PF08281 Sigma-70, region 4 D3093_12850 PF01339 CheB methylesterase D3093_12850 PF00072 Response regulator receiver domain D3093_12855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_12855 PF00072 Response regulator receiver domain D3093_12855 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_12855 PF00512 His Kinase A (phospho-acceptor) domain D3093_12855 PF00672 HAMP domain D3093_12855 PF01627 Hpt domain D3093_12860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_12880 PF01593 Flavin containing amine oxidoreductase D3093_12885 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_12885 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_12900 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_12900 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_12925 PF07977 FabA-like domain D3093_12935 PF00550 Phosphopantetheine attachment site D3093_12940 PF00550 Phosphopantetheine attachment site D3093_12970 PF00248 Aldo/keto reductase family D3093_12975 PF00664 ABC transporter transmembrane region D3093_12975 PF00005 ABC transporter D3093_12980 PF02954 Bacterial regulatory protein, Fis family D3093_12980 PF01590 GAF domain D3093_12980 PF00158 Sigma-54 interaction domain D3093_12985 PF01513 ATP-NAD kinase D3093_12990 PF00676 Dehydrogenase E1 component D3093_12995 PF02780 Transketolase, C-terminal domain D3093_12995 PF02779 Transketolase, pyrimidine binding domain D3093_13000 PF00561 alpha/beta hydrolase fold D3093_13000 PF00364 Biotin-requiring enzyme D3093_13035 PF17990 L-Lysine epsilon oxidase N-terminal D3093_13035 PF18417 L-lysine epsilon oxidase C-terminal domain D3093_13040 PF01494 FAD binding domain D3093_13055 PF00486 Transcriptional regulatory protein, C terminal D3093_13055 PF00072 Response regulator receiver domain D3093_13060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_13060 PF00512 His Kinase A (phospho-acceptor) domain D3093_13060 PF00072 Response regulator receiver domain D3093_13060 PF09308 LuxQ, periplasmic D3093_13065 PF00034 Cytochrome c D3093_13075 PF00384 Molybdopterin oxidoreductase D3093_13075 PF18364 Molybdopterin oxidoreductase N-terminal domain D3093_13075 PF01568 Molydopterin dinucleotide binding domain D3093_13080 PF00440 Bacterial regulatory proteins, tetR family D3093_13080 PF16925 Tetracyclin repressor-like, C-terminal domain D3093_13085 PF08240 Alcohol dehydrogenase GroES-like domain D3093_13085 PF00107 Zinc-binding dehydrogenase D3093_13105 PF01548 Transposase D3093_13105 PF02371 Transposase IS116/IS110/IS902 family D3093_13110 PF08676 MutL C terminal dimerisation domain D3093_13110 PF01119 DNA mismatch repair protein, C-terminal domain D3093_13130 PF00342 Phosphoglucose isomerase D3093_13140 PF05193 Peptidase M16 inactive domain D3093_13145 PF00675 Insulinase (Peptidase family M16) D3093_13145 PF05193 Peptidase M16 inactive domain D3093_13155 PF01252 Signal peptidase (SPase) II D3093_13160 PF00133 tRNA synthetases class I (I, L, M and V) D3093_13160 PF08264 Anticodon-binding domain of tRNA D3093_13165 PF00156 Phosphoribosyl transferase domain D3093_13170 PF01687 Riboflavin kinase D3093_13170 PF06574 FAD synthetase D3093_13175 PF01575 MaoC like domain D3093_13180 PF00106 short chain dehydrogenase D3093_13185 PF03330 Lytic transglycolase D3093_13185 PF05036 Sporulation related domain D3093_13210 PF08471 Class II vitamin B12-dependent ribonucleotide reductase D3093_13210 PF02867 Ribonucleotide reductase, barrel domain D3093_13215 PF01814 Hemerythrin HHE cation binding domain D3093_13240 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D3093_13250 PF02515 CoA-transferase family III D3093_13260 PF07724 AAA domain (Cdc48 subfamily) D3093_13260 PF17871 AAA lid domain D3093_13260 PF02861 Clp amino terminal domain, pathogenicity island component D3093_13260 PF00004 ATPase family associated with various cellular activities (AAA) D3093_13260 PF10431 C-terminal, D2-small domain, of ClpB protein D3093_13265 PF02617 ATP-dependent Clp protease adaptor protein ClpS D3093_13290 PF00768 D-alanyl-D-alanine carboxypeptidase D3093_13290 PF07943 Penicillin-binding protein 5, C-terminal domain D3093_13295 PF12849 PBP superfamily domain D3093_13300 PF00528 Binding-protein-dependent transport system inner membrane component D3093_13305 PF02634 FdhD/NarQ family D3093_13310 PF12804 MobA-like NTP transferase domain D3093_13335 PF01568 Molydopterin dinucleotide binding domain D3093_13335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3093_13335 PF00384 Molybdopterin oxidoreductase D3093_13340 PF13247 4Fe-4S dicluster domain D3093_13365 PF00596 Class II Aldolase and Adducin N-terminal domain D3093_13370 PF00672 HAMP domain D3093_13370 PF00072 Response regulator receiver domain D3093_13370 PF01627 Hpt domain D3093_13370 PF00512 His Kinase A (phospho-acceptor) domain D3093_13370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_13370 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_13375 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D3093_13380 PF00430 ATP synthase B/B' CF(0) D3093_13385 PF00430 ATP synthase B/B' CF(0) D3093_13390 PF00137 ATP synthase subunit C D3093_13395 PF00119 ATP synthase A chain D3093_13405 PF02630 SCO1/SenC D3093_13415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_13415 PF17200 Single Cache domain 2 D3093_13415 PF00672 HAMP domain D3093_13420 PF02562 PhoH-like protein D3093_13430 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D3093_13435 PF03776 Septum formation topological specificity factor MinE D3093_13450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_13450 PF17200 Single Cache domain 2 D3093_13450 PF00672 HAMP domain D3093_13455 PF00672 HAMP domain D3093_13455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_13455 PF17200 Single Cache domain 2 D3093_13460 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D3093_13460 PF13378 Enolase C-terminal domain-like D3093_13465 PF00266 Aminotransferase class-V D3093_13475 PF01329 Pterin 4 alpha carbinolamine dehydratase D3093_13485 PF02685 Glucokinase D3093_13490 PF00982 Glycosyltransferase family 20 D3093_13505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_13505 PF02743 Cache domain D3093_13505 PF00672 HAMP domain D3093_13510 PF01274 Malate synthase D3093_13515 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain D3093_13515 PF13538 UvrD-like helicase C-terminal domain D3093_13515 PF14490 Helix-hairpin-helix containing domain D3093_13520 PF00313 'Cold-shock' DNA-binding domain D3093_13530 PF00672 HAMP domain D3093_13530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_13530 PF00512 His Kinase A (phospho-acceptor) domain D3093_13530 PF01627 Hpt domain D3093_13530 PF00072 Response regulator receiver domain D3093_13530 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_13535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_13535 PF00672 HAMP domain D3093_13535 PF12729 Four helix bundle sensory module for signal transduction D3093_13550 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_13555 PF00766 Electron transfer flavoprotein FAD-binding domain D3093_13555 PF01012 Electron transfer flavoprotein domain D3093_13560 PF01012 Electron transfer flavoprotein domain D3093_13565 PF03206 Nitrogen fixation protein NifW D3093_13570 PF00132 Bacterial transferase hexapeptide (six repeats) D3093_13575 PF00682 HMGL-like D3093_13580 PF00266 Aminotransferase class-V D3093_13585 PF04324 BFD-like [2Fe-2S] binding domain D3093_13585 PF01106 NifU-like domain D3093_13585 PF01592 NifU-like N terminal domain D3093_13590 PF01521 Iron-sulphur cluster biosynthesis D3093_13605 PF13237 4Fe-4S dicluster domain D3093_13610 PF05082 Rop-like D3093_13615 PF03270 Protein of unknown function, DUF269 D3093_13620 PF02579 Dinitrogenase iron-molybdenum cofactor D3093_13625 PF00148 Nitrogenase component 1 type Oxidoreductase D3093_13630 PF00148 Nitrogenase component 1 type Oxidoreductase D3093_13630 PF04324 BFD-like [2Fe-2S] binding domain D3093_13635 PF13426 PAS domain D3093_13635 PF08447 PAS fold D3093_13635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_13640 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_13650 PF00148 Nitrogenase component 1 type Oxidoreductase D3093_13650 PF11844 Domain of unknown function (DUF3364) D3093_13655 PF00148 Nitrogenase component 1 type Oxidoreductase D3093_13660 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family D3093_13670 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) D3093_13675 PF03747 ADP-ribosylglycohydrolase D3093_13680 PF03960 ArsC family D3093_13685 PF13230 Glutamine amidotransferases class-II D3093_13690 PF02525 Flavodoxin-like fold D3093_13700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D3093_13710 PF06988 NifT/FixU protein D3093_13715 PF00266 Aminotransferase class-V D3093_13725 PF04319 NifZ domain D3093_13730 PF01816 Leucine rich repeat variant D3093_13730 PF05484 LRV protein FeS4 cluster D3093_13740 PF12838 4Fe-4S dicluster domain D3093_13745 PF02579 Dinitrogenase iron-molybdenum cofactor D3093_13745 PF04055 Radical SAM superfamily D3093_13750 PF00211 Adenylate and Guanylate cyclase catalytic domain D3093_13755 PF13185 GAF domain D3093_13755 PF02954 Bacterial regulatory protein, Fis family D3093_13755 PF00158 Sigma-54 interaction domain D3093_13760 PF00440 Bacterial regulatory proteins, tetR family D3093_13760 PF08362 YcdC-like protein, C-terminal region D3093_13770 PF00005 ABC transporter D3093_13780 PF03411 Penicillin-insensitive murein endopeptidase D3093_13790 PF00444 Ribosomal protein L36 D3093_13800 PF02913 FAD linked oxidases, C-terminal domain D3093_13800 PF01565 FAD binding domain D3093_13805 PF01565 FAD binding domain D3093_13810 PF13183 4Fe-4S dicluster domain D3093_13810 PF02754 Cysteine-rich domain D3093_13815 PF01066 CDP-alcohol phosphatidyltransferase D3093_13830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_13830 PF12806 Acetyl-CoA dehydrogenase C-terminal like D3093_13830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_13830 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_13845 PF02913 FAD linked oxidases, C-terminal domain D3093_13845 PF01565 FAD binding domain D3093_13850 PF01300 Telomere recombination D3093_13850 PF03481 Putative GTP-binding controlling metal-binding D3093_13855 PF13614 AAA domain D3093_13865 PF00578 AhpC/TSA family D3093_13870 PF08335 GlnD PII-uridylyltransferase D3093_13870 PF03710 Glutamate-ammonia ligase adenylyltransferase D3093_13880 PF00579 tRNA synthetases class I (W and Y) D3093_13885 PF03702 Anhydro-N-acetylmuramic acid kinase D3093_13890 PF02129 X-Pro dipeptidyl-peptidase (S15 family) D3093_13895 PF00132 Bacterial transferase hexapeptide (six repeats) D3093_13900 PF02082 Transcriptional regulator D3093_13905 PF00266 Aminotransferase class-V D3093_13910 PF07743 HSCB C-terminal oligomerisation domain D3093_13910 PF00226 DnaJ domain D3093_13915 PF00111 2Fe-2S iron-sulfur cluster binding domain D3093_13935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3093_13935 PF00529 HlyD membrane-fusion protein of T1SS D3093_13940 PF00005 ABC transporter D3093_13940 PF00664 ABC transporter transmembrane region D3093_13960 PF00106 short chain dehydrogenase D3093_13965 PF03466 LysR substrate binding domain D3093_13965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_13975 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3093_13975 PF00034 Cytochrome c D3093_13975 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3093_13980 PF00111 2Fe-2S iron-sulfur cluster binding domain D3093_13980 PF01799 [2Fe-2S] binding domain D3093_13990 PF00989 PAS fold D3093_13990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_13990 PF00512 His Kinase A (phospho-acceptor) domain D3093_13990 PF16736 Single Cache-like D3093_14000 PF00072 Response regulator receiver domain D3093_14015 PF04891 NifQ D3093_14025 PF01894 Uncharacterised protein family UPF0047 D3093_14035 PF13406 Transglycosylase SLT domain D3093_14055 PF00465 Iron-containing alcohol dehydrogenase D3093_14080 PF00534 Glycosyl transferases group 1 D3093_14080 PF13439 Glycosyltransferase Family 4 D3093_14105 PF10415 Fumarase C C-terminus D3093_14105 PF00206 Lyase D3093_14165 PF07690 Major Facilitator Superfamily D3093_14170 PF00512 His Kinase A (phospho-acceptor) domain D3093_14170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_14175 PF04364 DNA polymerase III chi subunit, HolC D3093_14180 PF00883 Cytosol aminopeptidase family, catalytic domain D3093_14180 PF02789 Cytosol aminopeptidase family, N-terminal domain D3093_14190 PF09312 SurA N-terminal domain D3093_14190 PF00639 PPIC-type PPIASE domain D3093_14195 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D3093_14200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_14200 PF00512 His Kinase A (phospho-acceptor) domain D3093_14200 PF00989 PAS fold D3093_14210 PF01464 Transglycosylase SLT domain D3093_14225 PF00398 Ribosomal RNA adenine dimethylase D3093_14230 PF00625 Guanylate kinase D3093_14235 PF08340 Domain of unknown function (DUF1732) D3093_14235 PF03755 YicC-like family, N-terminal region D3093_14240 PF00106 short chain dehydrogenase D3093_14245 PF00398 Ribosomal RNA adenine dimethylase D3093_14250 PF06055 Exopolysaccharide synthesis, ExoD D3093_14255 PF00005 ABC transporter D3093_14255 PF12848 ABC transporter D3093_14260 PF00334 Nucleoside diphosphate kinase D3093_14275 PF00551 Formyl transferase D3093_14280 PF02769 AIR synthase related protein, C-terminal domain D3093_14280 PF00586 AIR synthase related protein, N-terminal domain D3093_14290 PF01066 CDP-alcohol phosphatidyltransferase D3093_14295 PF01594 AI-2E family transporter D3093_14305 PF00106 short chain dehydrogenase D3093_14310 PF02525 Flavodoxin-like fold D3093_14320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_14320 PF03466 LysR substrate binding domain D3093_14325 PF01928 CYTH domain D3093_14335 PF02503 Polyphosphate kinase middle domain D3093_14335 PF17941 Polyphosphate kinase C-terminal domain 1 D3093_14335 PF13090 Polyphosphate kinase C-terminal domain 2 D3093_14335 PF13089 Polyphosphate kinase N-terminal domain D3093_14340 PF02541 Ppx/GppA phosphatase family D3093_14350 PF01612 3'-5' exonuclease D3093_14350 PF00570 HRDC domain D3093_14355 PF01336 OB-fold nucleic acid binding domain D3093_14355 PF00152 tRNA synthetases class II (D, K and N) D3093_14355 PF02938 GAD domain D3093_14370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3093_14370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3093_14375 PF08447 PAS fold D3093_14375 PF00990 Diguanylate cyclase, GGDEF domain D3093_14375 PF00563 EAL domain D3093_14375 PF08448 PAS fold D3093_14375 PF13426 PAS domain D3093_14375 PF05231 MASE1 D3093_14380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_14380 PF00989 PAS fold D3093_14380 PF00512 His Kinase A (phospho-acceptor) domain D3093_14385 PF00072 Response regulator receiver domain D3093_14390 PF00990 Diguanylate cyclase, GGDEF domain D3093_14390 PF00072 Response regulator receiver domain D3093_14395 PF00471 Ribosomal protein L33 D3093_14400 PF13180 PDZ domain D3093_14400 PF03572 Peptidase family S41 D3093_14405 PF08461 Ribonuclease R winged-helix domain D3093_14405 PF17876 Cold shock domain D3093_14405 PF00773 RNB domain D3093_14405 PF08206 Ribonuclease B OB domain D3093_14405 PF00575 S1 RNA binding domain D3093_14420 PF13368 Topoisomerase C-terminal repeat D3093_14420 PF01751 Toprim domain D3093_14420 PF01131 DNA topoisomerase D3093_14420 PF01396 Topoisomerase DNA binding C4 zinc finger D3093_14425 PF02481 DNA recombination-mediator protein A D3093_14425 PF17782 DprA winged helix domain D3093_14445 PF07690 Major Facilitator Superfamily D3093_14480 PF00512 His Kinase A (phospho-acceptor) domain D3093_14480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_14480 PF01627 Hpt domain D3093_14480 PF00989 PAS fold D3093_14480 PF00072 Response regulator receiver domain D3093_14480 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_14485 PF00072 Response regulator receiver domain D3093_14485 PF00486 Transcriptional regulatory protein, C terminal D3093_14515 PF01177 Asp/Glu/Hydantoin racemase D3093_14520 PF00528 Binding-protein-dependent transport system inner membrane component D3093_14525 PF00528 Binding-protein-dependent transport system inner membrane component D3093_14535 PF08402 TOBE domain D3093_14535 PF00005 ABC transporter D3093_14545 PF00762 Ferrochelatase D3093_14550 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D3093_14555 PF00528 Binding-protein-dependent transport system inner membrane component D3093_14560 PF00005 ABC transporter D3093_14565 PF00528 Binding-protein-dependent transport system inner membrane component D3093_14575 PF01476 LysM domain D3093_14575 PF04972 BON domain D3093_14580 PF00595 PDZ domain D3093_14590 PF00378 Enoyl-CoA hydratase/isomerase D3093_14595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3093_14595 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D3093_14600 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D3093_14600 PF00356 Bacterial regulatory proteins, lacI family D3093_14610 PF00920 Dehydratase family D3093_14615 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3093_14620 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D3093_14620 PF00356 Bacterial regulatory proteins, lacI family D3093_14625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3093_14625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3093_14630 PF00005 ABC transporter D3093_14645 PF00528 Binding-protein-dependent transport system inner membrane component D3093_14650 PF00528 Binding-protein-dependent transport system inner membrane component D3093_14655 PF03454 MoeA C-terminal region (domain IV) D3093_14655 PF03453 MoeA N-terminal region (domain I and II) D3093_14655 PF00994 Probable molybdopterin binding domain D3093_14680 PF00106 short chain dehydrogenase D3093_14685 PF01925 Sulfite exporter TauE/SafE D3093_14700 PF00692 dUTPase D3093_14710 PF00043 Glutathione S-transferase, C-terminal domain D3093_14710 PF13417 Glutathione S-transferase, N-terminal domain D3093_14715 PF00753 Metallo-beta-lactamase superfamily D3093_14715 PF16123 Hydroxyacylglutathione hydrolase C-terminus D3093_14735 PF00561 alpha/beta hydrolase fold D3093_14735 PF07021 Methionine biosynthesis protein MetW D3093_14740 PF00561 alpha/beta hydrolase fold D3093_14750 PF00155 Aminotransferase class I and II D3093_14755 PF02153 Prephenate dehydrogenase D3093_14770 PF03466 LysR substrate binding domain D3093_14770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_14775 PF00578 AhpC/TSA family D3093_14775 PF10417 C-terminal domain of 1-Cys peroxiredoxin D3093_14780 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_14780 PF13192 Thioredoxin domain D3093_14785 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3093_14785 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D3093_14790 PF03450 CO dehydrogenase flavoprotein C-terminal domain D3093_14790 PF00941 FAD binding domain in molybdopterin dehydrogenase D3093_14795 PF01799 [2Fe-2S] binding domain D3093_14795 PF00111 2Fe-2S iron-sulfur cluster binding domain D3093_14805 PF04307 LexA-binding, inner membrane-associated putative hydrolase D3093_14815 PF07883 Cupin domain D3093_14825 PF00486 Transcriptional regulatory protein, C terminal D3093_14825 PF00072 Response regulator receiver domain D3093_14830 PF02660 Glycerol-3-phosphate acyltransferase D3093_14835 PF01979 Amidohydrolase family D3093_14840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D3093_14840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D3093_14855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_14855 PF03466 LysR substrate binding domain D3093_14870 PF13847 Methyltransferase domain D3093_14885 PF03652 Holliday junction resolvase D3093_14890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_14890 PF00672 HAMP domain D3093_14895 PF02686 Glu-tRNAGln amidotransferase C subunit D3093_14900 PF01425 Amidase D3093_14905 PF02637 GatB domain D3093_14905 PF02934 GatB/GatE catalytic domain D3093_14910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_14910 PF00512 His Kinase A (phospho-acceptor) domain D3093_14925 PF02899 Phage integrase, N-terminal SAM-like domain D3093_14925 PF00589 Phage integrase family D3093_15020 PF00589 Phage integrase family D3093_15035 PF01555 DNA methylase D3093_15035 PF18755 Restriction Enzyme Adenine Methylase Associated D3093_15055 PF03354 Phage Terminase D3093_15200 PF17863 AAA lid domain D3093_15200 PF07726 ATPase family associated with various cellular activities (AAA) D3093_15210 PF00293 NUDIX domain D3093_15220 PF13735 tRNA nucleotidyltransferase domain 2 putative D3093_15220 PF01743 Poly A polymerase head domain D3093_15220 PF12627 Probable RNA and SrmB- binding site of polymerase A D3093_15225 PF01218 Coproporphyrinogen III oxidase D3093_15230 PF00588 SpoU rRNA Methylase family D3093_15235 PF00355 Rieske [2Fe-2S] domain D3093_15235 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal D3093_15240 PF00033 Cytochrome b/b6/petB D3093_15240 PF00032 Cytochrome b(C-terminal)/b6/petD D3093_15245 PF00032 Cytochrome b(C-terminal)/b6/petD D3093_15245 PF02167 Cytochrome C1 family D3093_15245 PF00033 Cytochrome b/b6/petB D3093_15255 PF00672 HAMP domain D3093_15255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_15255 PF01627 Hpt domain D3093_15255 PF00072 Response regulator receiver domain D3093_15255 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_15255 PF00512 His Kinase A (phospho-acceptor) domain D3093_15265 PF01022 Bacterial regulatory protein, arsR family D3093_15275 PF01206 Sulfurtransferase TusA D3093_15280 PF00850 Histone deacetylase domain D3093_15285 PF02609 Exonuclease VII small subunit D3093_15290 PF00348 Polyprenyl synthetase D3093_15295 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D3093_15295 PF02780 Transketolase, C-terminal domain D3093_15295 PF02779 Transketolase, pyrimidine binding domain D3093_15305 PF01728 FtsJ-like methyltransferase D3093_15305 PF01479 S4 domain D3093_15340 PF03050 Transposase IS66 family D3093_15340 PF13817 IS66 C-terminal element D3093_15340 PF13007 Transposase C of IS166 homeodomain D3093_15340 PF13005 zinc-finger binding domain of transposase IS66 D3093_15390 PF02687 FtsX-like permease family D3093_15390 PF00005 ABC transporter D3093_15390 PF12704 MacB-like periplasmic core domain D3093_15395 PF12704 MacB-like periplasmic core domain D3093_15395 PF02687 FtsX-like permease family D3093_15395 PF00005 ABC transporter D3093_15425 PF02668 Taurine catabolism dioxygenase TauD, TfdA family D3093_15435 PF00005 ABC transporter D3093_15440 PF00528 Binding-protein-dependent transport system inner membrane component D3093_15445 PF00291 Pyridoxal-phosphate dependent enzyme D3093_15450 PF02615 Malate/L-lactate dehydrogenase D3093_15475 PF02887 Pyruvate kinase, alpha/beta domain D3093_15475 PF00224 Pyruvate kinase, barrel domain D3093_15480 PF00248 Aldo/keto reductase family D3093_15485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_15485 PF03466 LysR substrate binding domain D3093_15490 PF00149 Calcineurin-like phosphoesterase D3093_15525 PF01814 Hemerythrin HHE cation binding domain D3093_15545 PF00156 Phosphoribosyl transferase domain D3093_15550 PF02405 Permease MlaE D3093_15555 PF00005 ABC transporter D3093_15575 PF00140 Sigma-70 factor, region 1.2 D3093_15575 PF04545 Sigma-70, region 4 D3093_15575 PF04542 Sigma-70 region 2 D3093_15580 PF01654 Cytochrome bd terminal oxidase subunit I D3093_15585 PF02322 Cytochrome bd terminal oxidase subunit II D3093_15605 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3093_15605 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3093_15625 PF12804 MobA-like NTP transferase domain D3093_15625 PF00132 Bacterial transferase hexapeptide (six repeats) D3093_15640 PF03102 NeuB family D3093_15640 PF08666 SAF domain D3093_15645 PF02348 Cytidylyltransferase D3093_15655 PF00364 Biotin-requiring enzyme D3093_15655 PF00561 alpha/beta hydrolase fold D3093_15675 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3093_15675 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3093_15680 PF00669 Bacterial flagellin N-terminal helical region D3093_15680 PF00700 Bacterial flagellin C-terminal helical region D3093_15720 PF04972 BON domain D3093_15725 PF01520 N-acetylmuramoyl-L-alanine amidase D3093_15750 PF00551 Formyl transferase D3093_15755 PF00072 Response regulator receiver domain D3093_15770 PF13193 AMP-binding enzyme C-terminal domain D3093_15770 PF00501 AMP-binding enzyme D3093_15790 PF01979 Amidohydrolase family D3093_15805 PF01175 Urocanase Rossmann-like domain D3093_15805 PF17392 Urocanase C-terminal domain D3093_15805 PF17391 Urocanase N-terminal domain D3093_15810 PF00892 EamA-like transporter family D3093_15820 PF08241 Methyltransferase domain D3093_15830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_15835 PF00528 Binding-protein-dependent transport system inner membrane component D3093_15840 PF12911 N-terminal TM domain of oligopeptide transport permease C D3093_15840 PF00528 Binding-protein-dependent transport system inner membrane component D3093_15845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_15845 PF00005 ABC transporter D3093_15850 PF00005 ABC transporter D3093_15850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_15890 PF04461 Protein of unknown function (DUF520) D3093_15905 PF00158 Sigma-54 interaction domain D3093_15905 PF00072 Response regulator receiver domain D3093_15905 PF02954 Bacterial regulatory protein, Fis family D3093_15910 PF04545 Sigma-70, region 4 D3093_15910 PF00140 Sigma-70 factor, region 1.2 D3093_15910 PF04542 Sigma-70 region 2 D3093_15915 PF03707 Bacterial signalling protein N terminal repeat D3093_15915 PF00990 Diguanylate cyclase, GGDEF domain D3093_15915 PF00563 EAL domain D3093_15920 PF02080 TrkA-C domain D3093_15920 PF00999 Sodium/hydrogen exchanger family D3093_15920 PF03471 Transporter associated domain D3093_15945 PF01734 Patatin-like phospholipase D3093_15950 PF00664 ABC transporter transmembrane region D3093_15950 PF00005 ABC transporter D3093_15955 PF00989 PAS fold D3093_15955 PF00512 His Kinase A (phospho-acceptor) domain D3093_15955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_15980 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D3093_15995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_15995 PF03466 LysR substrate binding domain D3093_16000 PF03358 NADPH-dependent FMN reductase D3093_16005 PF13409 Glutathione S-transferase, N-terminal domain D3093_16015 PF00196 Bacterial regulatory proteins, luxR family D3093_16015 PF00072 Response regulator receiver domain D3093_16025 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_16055 PF01435 Peptidase family M48 D3093_16065 PF01292 Prokaryotic cytochrome b561 D3093_16085 PF11154 Protein of unknown function (DUF2934) D3093_16085 PF00430 ATP synthase B/B' CF(0) D3093_16095 PF00004 ATPase family associated with various cellular activities (AAA) D3093_16095 PF02190 ATP-dependent protease La (LON) substrate-binding domain D3093_16095 PF05362 Lon protease (S16) C-terminal proteolytic domain D3093_16105 PF12802 MarR family D3093_16115 PF13426 PAS domain D3093_16115 PF13581 Histidine kinase-like ATPase domain D3093_16115 PF07568 Histidine kinase D3093_16130 PF01192 RNA polymerase Rpb6 D3093_16135 PF04607 Region found in RelA / SpoT proteins D3093_16135 PF13291 ACT domain D3093_16135 PF02824 TGS domain D3093_16145 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D3093_16150 PF01648 4'-phosphopantetheinyl transferase superfamily D3093_16155 PF10502 Signal peptidase, peptidase S26 D3093_16160 PF14622 Ribonuclease-III-like D3093_16160 PF00035 Double-stranded RNA binding motif D3093_16165 PF01926 50S ribosome-binding GTPase D3093_16165 PF07650 KH domain D3093_16175 PF05128 Domain of unknown function (DUF697) D3093_16195 PF00574 Clp protease D3093_16200 PF00535 Glycosyl transferase family 2 D3093_16205 PF00149 Calcineurin-like phosphoesterase D3093_16210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3093_16215 PF00873 AcrB/AcrD/AcrF family D3093_16220 PF01841 Transglutaminase-like superfamily D3093_16220 PF08379 Bacterial transglutaminase-like N-terminal region D3093_16225 PF14403 Circularly permuted ATP-grasp type 2 D3093_16225 PF04168 A predicted alpha-helical domain with a conserved ER motif. D3093_16245 PF01263 Aldose 1-epimerase D3093_16255 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D3093_16265 PF13617 YnbE-like lipoprotein D3093_16285 PF03968 OstA-like protein D3093_16285 PF04453 LPS transport system D D3093_16295 PF00270 DEAD/DEAH box helicase D3093_16295 PF00271 Helicase conserved C-terminal domain D3093_16305 PF12697 Alpha/beta hydrolase family D3093_16315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_16315 PF00986 DNA gyrase B subunit, carboxyl terminus D3093_16315 PF00204 DNA gyrase B D3093_16315 PF01751 Toprim domain D3093_16320 PF03061 Thioesterase superfamily D3093_16325 PF04977 Septum formation initiator D3093_16330 PF00676 Dehydrogenase E1 component D3093_16335 PF00364 Biotin-requiring enzyme D3093_16335 PF02779 Transketolase, pyrimidine binding domain D3093_16335 PF02780 Transketolase, C-terminal domain D3093_16340 PF02817 e3 binding domain D3093_16340 PF00364 Biotin-requiring enzyme D3093_16340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D3093_16345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3093_16345 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_16350 PF04055 Radical SAM superfamily D3093_16350 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family D3093_16355 PF03364 Polyketide cyclase / dehydrase and lipid transport D3093_16360 PF00994 Probable molybdopterin binding domain D3093_16360 PF18146 Damage-inducible protein CinA KH domain D3093_16360 PF02464 Competence-damaged protein D3093_16365 PF02542 YgbB family D3093_16365 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D3093_16370 PF01578 Cytochrome C assembly protein D3093_16375 PF01207 Dihydrouridine synthase (Dus) D3093_16380 PF00512 His Kinase A (phospho-acceptor) domain D3093_16380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_16380 PF00989 PAS fold D3093_16385 PF00158 Sigma-54 interaction domain D3093_16385 PF02954 Bacterial regulatory protein, Fis family D3093_16385 PF00072 Response regulator receiver domain D3093_16390 PF00672 HAMP domain D3093_16390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_16395 PF00158 Sigma-54 interaction domain D3093_16395 PF02954 Bacterial regulatory protein, Fis family D3093_16395 PF00072 Response regulator receiver domain D3093_16400 PF02080 TrkA-C domain D3093_16400 PF02254 TrkA-N domain D3093_16405 PF01063 Amino-transferase class IV D3093_16415 PF17209 Hfq protein D3093_16420 PF16360 GTP-binding GTPase Middle Region D3093_16420 PF01926 50S ribosome-binding GTPase D3093_16420 PF13167 GTP-binding GTPase N-terminal D3093_16435 PF00459 Inositol monophosphatase family D3093_16450 PF03819 MazG nucleotide pyrophosphohydrolase domain D3093_16455 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D3093_16460 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D3093_16465 PF00361 Proton-conducting membrane transporter D3093_16475 PF00146 NADH dehydrogenase D3093_16480 PF00361 Proton-conducting membrane transporter D3093_16485 PF00575 S1 RNA binding domain D3093_16485 PF16921 Tex protein YqgF-like domain D3093_16485 PF09371 Tex-like protein N-terminal domain D3093_16485 PF17674 HHH domain D3093_16490 PF03707 Bacterial signalling protein N terminal repeat D3093_16490 PF00990 Diguanylate cyclase, GGDEF domain D3093_16490 PF00563 EAL domain D3093_16495 PF01810 LysE type translocator D3093_16525 PF01906 Putative heavy-metal-binding D3093_16530 PF00561 alpha/beta hydrolase fold D3093_16540 PF00072 Response regulator receiver domain D3093_16545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_16550 PF02798 Glutathione S-transferase, N-terminal domain D3093_16550 PF00043 Glutathione S-transferase, C-terminal domain D3093_16555 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_16560 PF00128 Alpha amylase, catalytic domain D3093_16580 PF17200 Single Cache domain 2 D3093_16580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_16580 PF00672 HAMP domain D3093_16600 PF00873 AcrB/AcrD/AcrF family D3093_16615 PF00873 AcrB/AcrD/AcrF family D3093_16620 PF13533 Biotin-lipoyl like D3093_16625 PF03466 LysR substrate binding domain D3093_16625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_16630 PF07286 Protein of unknown function (DUF1445) D3093_16645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_16650 PF02682 Carboxyltransferase domain, subdomain C and D D3093_16655 PF02626 Carboxyltransferase domain, subdomain A and B D3093_16660 PF03746 LamB/YcsF family D3093_16665 PF00072 Response regulator receiver domain D3093_16665 PF02954 Bacterial regulatory protein, Fis family D3093_16665 PF00158 Sigma-54 interaction domain D3093_16670 PF00512 His Kinase A (phospho-acceptor) domain D3093_16670 PF02743 Cache domain D3093_16670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_16675 PF00009 Elongation factor Tu GTP binding domain D3093_16675 PF16658 Class II release factor RF3, C-terminal domain D3093_16680 PF01118 Semialdehyde dehydrogenase, NAD binding domain D3093_16680 PF02774 Semialdehyde dehydrogenase, dimerisation domain D3093_16685 PF00343 Carbohydrate phosphorylase D3093_16710 PF08281 Sigma-70, region 4 D3093_16710 PF04542 Sigma-70 region 2 D3093_16735 PF00999 Sodium/hydrogen exchanger family D3093_16740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_16745 PF00072 Response regulator receiver domain D3093_16745 PF00486 Transcriptional regulatory protein, C terminal D3093_16780 PF02082 Transcriptional regulator D3093_16785 PF01458 Uncharacterized protein family (UPF0051) D3093_16790 PF00005 ABC transporter D3093_16795 PF01458 Uncharacterized protein family (UPF0051) D3093_16800 PF00266 Aminotransferase class-V D3093_16805 PF01592 NifU-like N terminal domain D3093_16815 PF01521 Iron-sulphur cluster biosynthesis D3093_16825 PF01433 Peptidase family M1 domain D3093_16825 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D3093_16825 PF11940 Domain of unknown function (DUF3458) Ig-like fold D3093_16830 PF00034 Cytochrome c D3093_16845 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D3093_16880 PF11154 Protein of unknown function (DUF2934) D3093_16880 PF00430 ATP synthase B/B' CF(0) D3093_16885 PF00892 EamA-like transporter family D3093_16890 PF00072 Response regulator receiver domain D3093_16890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_16890 PF00512 His Kinase A (phospho-acceptor) domain D3093_16890 PF09456 RcsC Alpha-Beta-Loop (ABL) D3093_16895 PF07690 Major Facilitator Superfamily D3093_16900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_16900 PF03466 LysR substrate binding domain D3093_16910 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D3093_16910 PF00037 4Fe-4S binding domain D3093_16910 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D3093_16915 PF12838 4Fe-4S dicluster domain D3093_16915 PF00384 Molybdopterin oxidoreductase D3093_16915 PF01568 Molydopterin dinucleotide binding domain D3093_16915 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D3093_16915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3093_16920 PF02634 FdhD/NarQ family D3093_16940 PF00919 Uncharacterized protein family UPF0004 D3093_16940 PF18693 TRAM domain D3093_16940 PF04055 Radical SAM superfamily D3093_16945 PF01588 Putative tRNA binding domain D3093_16965 PF13167 GTP-binding GTPase N-terminal D3093_16965 PF16360 GTP-binding GTPase Middle Region D3093_16965 PF01926 50S ribosome-binding GTPase D3093_16975 PF00920 Dehydratase family D3093_16990 PF07568 Histidine kinase D3093_16990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_16990 PF12282 Signal transduction histidine kinase D3093_17010 PF00589 Phage integrase family D3093_17010 PF14659 Phage integrase, N-terminal SAM-like domain D3093_17085 PF01467 Cytidylyltransferase-like D3093_17090 PF03989 DNA gyrase C-terminal domain, beta-propeller D3093_17090 PF00521 DNA gyrase/topoisomerase IV, subunit A D3093_17095 PF01554 MatE D3093_17135 PF00436 Single-strand binding protein family D3093_17140 PF17755 UvrA DNA-binding domain D3093_17140 PF17760 UvrA interaction domain D3093_17160 PF01134 Glucose inhibited division protein A D3093_17185 PF01593 Flavin containing amine oxidoreductase D3093_17190 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D3093_17190 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D3093_17195 PF04430 Protein of unknown function (DUF498/DUF598) D3093_17205 PF02699 Preprotein translocase subunit D3093_17220 PF01551 Peptidase family M23 D3093_17220 PF01476 LysM domain D3093_17230 PF01975 Survival protein SurE D3093_17235 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3093_17235 PF02403 Seryl-tRNA synthetase N-terminal domain D3093_17240 PF00990 Diguanylate cyclase, GGDEF domain D3093_17240 PF00072 Response regulator receiver domain D3093_17245 PF00902 Sec-independent protein translocase protein (TatC) D3093_17250 PF02416 mttA/Hcf106 family D3093_17255 PF02416 mttA/Hcf106 family D3093_17260 PF00005 ABC transporter D3093_17260 PF08402 TOBE domain D3093_17265 PF04079 Segregation and condensation complex subunit ScpB D3093_17270 PF02616 Segregation and condensation protein ScpA D3093_17275 PF02163 Peptidase family M50 D3093_17280 PF00933 Glycosyl hydrolase family 3 N terminal domain D3093_17290 PF03485 Arginyl tRNA synthetase N terminal domain D3093_17290 PF05746 DALR anticodon binding domain D3093_17290 PF00750 tRNA synthetases class I (R) D3093_17295 PF13286 Phosphohydrolase-associated domain D3093_17295 PF01966 HD domain D3093_17300 PF01521 Iron-sulphur cluster biosynthesis D3093_17305 PF03372 Endonuclease/Exonuclease/phosphatase family D3093_17320 PF02223 Thymidylate kinase D3093_17325 PF04055 Radical SAM superfamily D3093_17325 PF06463 Molybdenum Cofactor Synthesis C D3093_17330 PF01119 DNA mismatch repair protein, C-terminal domain D3093_17330 PF08676 MutL C terminal dimerisation domain D3093_17350 PF00145 C-5 cytosine-specific DNA methylase D3093_17355 PF03852 DNA mismatch endonuclease Vsr D3093_17380 PF13356 Arm DNA-binding domain D3093_17380 PF00589 Phage integrase family D3093_17385 PF00072 Response regulator receiver domain D3093_17385 PF00990 Diguanylate cyclase, GGDEF domain D3093_17390 PF00694 Aconitase C-terminal domain D3093_17395 PF00330 Aconitase family (aconitate hydratase) D3093_17405 PF00857 Isochorismatase family D3093_17410 PF01968 Hydantoinase/oxoprolinase D3093_17410 PF05378 Hydantoinase/oxoprolinase N-terminal region D3093_17415 PF02538 Hydantoinase B/oxoprolinase D3093_17430 PF00005 ABC transporter D3093_17435 PF00005 ABC transporter D3093_17435 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_17440 PF02653 Branched-chain amino acid transport system / permease component D3093_17440 PF11862 Domain of unknown function (DUF3382) D3093_17445 PF02653 Branched-chain amino acid transport system / permease component D3093_17450 PF13458 Periplasmic binding protein D3093_17455 PF00392 Bacterial regulatory proteins, gntR family D3093_17455 PF07702 UTRA domain D3093_17460 PF09723 Zinc ribbon domain D3093_17465 PF03069 Acetamidase/Formamidase family D3093_17480 PF00005 ABC transporter D3093_17485 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_17485 PF00005 ABC transporter D3093_17505 PF18415 Histidine kinase receptor ArcB trans-membrane domain D3093_17505 PF00512 His Kinase A (phospho-acceptor) domain D3093_17505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_17505 PF00072 Response regulator receiver domain D3093_17505 PF00989 PAS fold D3093_17505 PF01627 Hpt domain D3093_17510 PF00072 Response regulator receiver domain D3093_17515 PF00092 von Willebrand factor type A domain D3093_17520 PF07728 AAA domain (dynein-related subfamily) D3093_17520 PF08406 CbbQ/NirQ/NorQ C-terminal D3093_17525 PF00795 Carbon-nitrogen hydrolase D3093_17530 PF00005 ABC transporter D3093_17530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_17535 PF00005 ABC transporter D3093_17535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_17545 PF00528 Binding-protein-dependent transport system inner membrane component D3093_17550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_17625 PF00005 ABC transporter D3093_17625 PF03459 TOBE domain D3093_17630 PF00528 Binding-protein-dependent transport system inner membrane component D3093_17640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_17640 PF03459 TOBE domain D3093_17655 PF03350 Uncharacterized protein family, UPF0114 D3093_17760 PF17871 AAA lid domain D3093_17760 PF10431 C-terminal, D2-small domain, of ClpB protein D3093_17760 PF07724 AAA domain (Cdc48 subfamily) D3093_17760 PF00004 ATPase family associated with various cellular activities (AAA) D3093_17765 PF04717 Type VI secretion system, phage-baseplate injector D3093_17775 PF01548 Transposase D3093_17775 PF02371 Transposase IS116/IS110/IS902 family D3093_17785 PF00817 impB/mucB/samB family D3093_17785 PF11799 impB/mucB/samB family C-terminal domain D3093_17790 PF12973 ChrR Cupin-like domain D3093_17795 PF04542 Sigma-70 region 2 D3093_17795 PF04545 Sigma-70, region 4 D3093_17800 PF13185 GAF domain D3093_17800 PF00158 Sigma-54 interaction domain D3093_17800 PF02954 Bacterial regulatory protein, Fis family D3093_17805 PF01228 Glycine radical D3093_17805 PF02901 Pyruvate formate lyase-like D3093_17815 PF02470 MlaD protein D3093_17820 PF04403 Paraquat-inducible protein A D3093_17835 PF01515 Phosphate acetyl/butaryl transferase D3093_17835 PF03949 Malic enzyme, NAD binding domain D3093_17835 PF00390 Malic enzyme, N-terminal domain D3093_17840 PF00375 Sodium:dicarboxylate symporter family D3093_17845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_17845 PF00512 His Kinase A (phospho-acceptor) domain D3093_17850 PF00158 Sigma-54 interaction domain D3093_17850 PF02954 Bacterial regulatory protein, Fis family D3093_17850 PF00072 Response regulator receiver domain D3093_17870 PF02632 BioY family D3093_17875 PF02785 Biotin carboxylase C-terminal domain D3093_17875 PF00289 Biotin carboxylase, N-terminal domain D3093_17875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3093_17875 PF00364 Biotin-requiring enzyme D3093_17880 PF01039 Carboxyl transferase domain D3093_17885 PF01381 Helix-turn-helix D3093_17885 PF06114 IrrE N-terminal-like domain D3093_17885 PF09856 Predicted transcriptional regulator (DUF2083) D3093_17890 PF01177 Asp/Glu/Hydantoin racemase D3093_17900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_17900 PF00512 His Kinase A (phospho-acceptor) domain D3093_17900 PF08448 PAS fold D3093_17900 PF13188 PAS domain D3093_17900 PF00072 Response regulator receiver domain D3093_17910 PF00958 GMP synthase C terminal domain D3093_17910 PF02540 NAD synthase D3093_17910 PF00117 Glutamine amidotransferase class-I D3093_17915 PF00583 Acetyltransferase (GNAT) family D3093_17935 PF01029 NusB family D3093_17935 PF01189 16S rRNA methyltransferase RsmB/F D3093_17940 PF06725 3D domain D3093_17940 PF03562 MltA specific insert domain D3093_17950 PF06906 Protein of unknown function (DUF1272) D3093_17955 PF02527 rRNA small subunit methyltransferase G D3093_17955 PF00588 SpoU rRNA Methylase family D3093_17960 PF00571 CBS domain D3093_17960 PF00478 IMP dehydrogenase / GMP reductase domain D3093_17965 PF01728 FtsJ-like methyltransferase D3093_17990 PF00005 ABC transporter D3093_17990 PF06472 ABC transporter transmembrane region 2 D3093_17995 PF00892 EamA-like transporter family D3093_18005 PF05050 Methyltransferase FkbM domain D3093_18015 PF13382 Adenine deaminase C-terminal domain D3093_18015 PF01979 Amidohydrolase family D3093_18030 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D3093_18030 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D3093_18035 PF13247 4Fe-4S dicluster domain D3093_18040 PF03916 Polysulphide reductase, NrfD D3093_18045 PF00374 Nickel-dependent hydrogenase D3093_18050 PF01750 Hydrogenase maturation protease D3093_18055 PF10996 Beta-Casp domain D3093_18055 PF00753 Metallo-beta-lactamase superfamily D3093_18055 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D3093_18075 PF01455 HupF/HypC family D3093_18085 PF00374 Nickel-dependent hydrogenase D3093_18090 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D3093_18095 PF02492 CobW/HypB/UreG, nucleotide-binding domain D3093_18100 PF01300 Telomere recombination D3093_18100 PF00708 Acylphosphatase D3093_18100 PF07503 HypF finger D3093_18100 PF17788 HypF Kae1-like domain D3093_18105 PF01455 HupF/HypC family D3093_18110 PF02769 AIR synthase related protein, C-terminal domain D3093_18110 PF00586 AIR synthase related protein, N-terminal domain D3093_18115 PF02397 Bacterial sugar transferase D3093_18120 PF03572 Peptidase family S41 D3093_18120 PF13180 PDZ domain D3093_18125 PF00313 'Cold-shock' DNA-binding domain D3093_18130 PF02810 SEC-C motif D3093_18135 PF13302 Acetyltransferase (GNAT) domain D3093_18135 PF00027 Cyclic nucleotide-binding domain D3093_18140 PF01351 Ribonuclease HII D3093_18145 PF18755 Restriction Enzyme Adenine Methylase Associated D3093_18145 PF01555 DNA methylase D3093_18155 PF13188 PAS domain D3093_18155 PF00072 Response regulator receiver domain D3093_18155 PF00512 His Kinase A (phospho-acceptor) domain D3093_18155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_18155 PF08448 PAS fold D3093_18165 PF14815 NUDIX domain D3093_18165 PF00633 Helix-hairpin-helix motif D3093_18165 PF10576 Iron-sulfur binding domain of endonuclease III D3093_18165 PF00730 HhH-GPD superfamily base excision DNA repair protein D3093_18180 PF02463 RecF/RecN/SMC N terminal domain D3093_18185 PF01266 FAD dependent oxidoreductase D3093_18195 PF03922 OmpW family D3093_18205 PF00072 Response regulator receiver domain D3093_18205 PF00196 Bacterial regulatory proteins, luxR family D3093_18210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_18210 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_18210 PF12806 Acetyl-CoA dehydrogenase C-terminal like D3093_18210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_18215 PF00378 Enoyl-CoA hydratase/isomerase D3093_18215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3093_18215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3093_18220 PF02803 Thiolase, C-terminal domain D3093_18220 PF00108 Thiolase, N-terminal domain D3093_18225 PF09278 MerR, DNA binding D3093_18225 PF00376 MerR family regulatory protein D3093_18235 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain D3093_18235 PF01835 MG2 domain D3093_18235 PF07703 Alpha-2-macroglobulin bait region domain D3093_18235 PF17962 Bacterial macroglobulin domain 6 D3093_18235 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain D3093_18235 PF11974 Bacterial alpha-2-macroglobulin MG3 domain D3093_18235 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain D3093_18235 PF00207 Alpha-2-macroglobulin family D3093_18240 PF00989 PAS fold D3093_18240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_18240 PF00512 His Kinase A (phospho-acceptor) domain D3093_18245 PF00155 Aminotransferase class I and II D3093_18260 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3093_18270 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_18275 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_18280 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D3093_18285 PF02685 Glucokinase D3093_18285 PF01380 SIS domain D3093_18285 PF01418 Helix-turn-helix domain, rpiR family D3093_18290 PF01207 Dihydrouridine synthase (Dus) D3093_18300 PF00255 Glutathione peroxidase D3093_18305 PF07690 Major Facilitator Superfamily D3093_18315 PF00924 Mechanosensitive ion channel D3093_18315 PF12795 Mechanosensitive ion channel porin domain D3093_18315 PF12794 Mechanosensitive ion channel inner membrane domain 1 D3093_18365 PF00107 Zinc-binding dehydrogenase D3093_18365 PF08240 Alcohol dehydrogenase GroES-like domain D3093_18370 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_18380 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_18385 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus D3093_18385 PF08666 SAF domain D3093_18390 PF08125 Mannitol dehydrogenase C-terminal domain D3093_18390 PF01232 Mannitol dehydrogenase Rossmann domain D3093_18415 PF16868 NMT1-like family D3093_18420 PF00756 Putative esterase D3093_18425 PF08240 Alcohol dehydrogenase GroES-like domain D3093_18425 PF00107 Zinc-binding dehydrogenase D3093_18430 PF03466 LysR substrate binding domain D3093_18430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_18440 PF04143 Sulphur transport D3093_18445 PF00999 Sodium/hydrogen exchanger family D3093_18455 PF08402 TOBE domain D3093_18455 PF00005 ABC transporter D3093_18460 PF00528 Binding-protein-dependent transport system inner membrane component D3093_18480 PF00768 D-alanyl-D-alanine carboxypeptidase D3093_18480 PF07943 Penicillin-binding protein 5, C-terminal domain D3093_18505 PF17149 Periplasmic sensor domain found in signal transduction proteins D3093_18505 PF00672 HAMP domain D3093_18505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_18505 PF00512 His Kinase A (phospho-acceptor) domain D3093_18505 PF01627 Hpt domain D3093_18505 PF00072 Response regulator receiver domain D3093_18520 PF01381 Helix-turn-helix D3093_18525 PF08345 Flagellar M-ring protein C-terminal D3093_18525 PF01514 Secretory protein of YscJ/FliF family D3093_18535 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D3093_18540 PF01618 MotA/TolQ/ExbB proton channel family D3093_18545 PF02954 Bacterial regulatory protein, Fis family D3093_18545 PF00158 Sigma-54 interaction domain D3093_18555 PF00448 SRP54-type protein, GTPase domain D3093_18555 PF02881 SRP54-type protein, helical bundle domain D3093_18560 PF10609 NUBPL iron-transfer P-loop NTPase D3093_18575 PF00563 EAL domain D3093_18575 PF00990 Diguanylate cyclase, GGDEF domain D3093_18575 PF03707 Bacterial signalling protein N terminal repeat D3093_18585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3093_18585 PF18269 T3SS EscN ATPase C-terminal domain D3093_18585 PF02874 ATP synthase alpha/beta family, beta-barrel domain D3093_18590 PF00486 Transcriptional regulatory protein, C terminal D3093_18590 PF00072 Response regulator receiver domain D3093_18600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_18600 PF03466 LysR substrate binding domain D3093_18605 PF03705 CheR methyltransferase, all-alpha domain D3093_18605 PF01739 CheR methyltransferase, SAM binding domain D3093_18610 PF01339 CheB methylesterase D3093_18610 PF00072 Response regulator receiver domain D3093_18615 PF08769 Sporulation initiation factor Spo0A C terminal D3093_18615 PF00072 Response regulator receiver domain D3093_18620 PF01584 CheW-like domain D3093_18625 PF01584 CheW-like domain D3093_18625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_18625 PF01627 Hpt domain D3093_18625 PF07194 P2 response regulator binding domain D3093_18625 PF02895 Signal transducing histidine kinase, homodimeric domain D3093_18630 PF10090 Histidine phosphotransferase C-terminal domain D3093_18645 PF01804 Penicillin amidase D3093_18650 PF00291 Pyridoxal-phosphate dependent enzyme D3093_18650 PF13291 ACT domain D3093_18655 PF01613 Flavin reductase like domain D3093_18660 PF00691 OmpA family D3093_18660 PF13677 Membrane MotB of proton-channel complex MotA/MotB D3093_18665 PF14403 Circularly permuted ATP-grasp type 2 D3093_18670 PF04168 A predicted alpha-helical domain with a conserved ER motif. D3093_18670 PF14403 Circularly permuted ATP-grasp type 2 D3093_18675 PF04377 Arginine-tRNA-protein transferase, C terminus D3093_18675 PF04376 Arginine-tRNA-protein transferase, N terminus D3093_18685 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_18690 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_18695 PF03989 DNA gyrase C-terminal domain, beta-propeller D3093_18695 PF00521 DNA gyrase/topoisomerase IV, subunit A D3093_18700 PF02565 Recombination protein O C terminal D3093_18700 PF11967 Recombination protein O N terminal D3093_18705 PF00563 EAL domain D3093_18705 PF00990 Diguanylate cyclase, GGDEF domain D3093_18705 PF08447 PAS fold D3093_18705 PF08448 PAS fold D3093_18720 PF07690 Major Facilitator Superfamily D3093_18725 PF13533 Biotin-lipoyl like D3093_18730 PF18665 Tetracyclin repressor-like, C-terminal domain D3093_18730 PF00440 Bacterial regulatory proteins, tetR family D3093_18740 PF00005 ABC transporter D3093_18765 PF00317 Ribonucleotide reductase, all-alpha domain D3093_18765 PF03477 ATP cone domain D3093_18765 PF02867 Ribonucleotide reductase, barrel domain D3093_18770 PF09335 SNARE associated Golgi protein D3093_18775 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D3093_18775 PF00117 Glutamine amidotransferase class-I D3093_18780 PF00392 Bacterial regulatory proteins, gntR family D3093_18780 PF00155 Aminotransferase class I and II D3093_18785 PF03594 Benzoate membrane transport protein D3093_18790 PF03466 LysR substrate binding domain D3093_18790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_18795 PF02525 Flavodoxin-like fold D3093_18810 PF12848 ABC transporter D3093_18810 PF00005 ABC transporter D3093_18820 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_18825 PF01924 Hydrogenase formation hypA family D3093_18840 PF04752 ChaC-like protein D3093_18850 PF05193 Peptidase M16 inactive domain D3093_18850 PF00675 Insulinase (Peptidase family M16) D3093_18875 PF00330 Aconitase family (aconitate hydratase) D3093_18875 PF06434 Aconitate hydratase 2 N-terminus D3093_18875 PF11791 Aconitate B N-terminal domain D3093_18895 PF07690 Major Facilitator Superfamily D3093_18900 PF00258 Flavodoxin D3093_18915 PF03737 Aldolase/RraA D3093_18925 PF01865 Protein of unknown function DUF47 D3093_18930 PF01384 Phosphate transporter family D3093_18940 PF00072 Response regulator receiver domain D3093_18940 PF00211 Adenylate and Guanylate cyclase catalytic domain D3093_18955 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding D3093_18965 PF13545 Crp-like helix-turn-helix domain D3093_18965 PF00027 Cyclic nucleotide-binding domain D3093_18975 PF13426 PAS domain D3093_18975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_18975 PF00072 Response regulator receiver domain D3093_18980 PF00072 Response regulator receiver domain D3093_18985 PF01370 NAD dependent epimerase/dehydratase family D3093_18990 PF02690 Na+/Pi-cotransporter D3093_19000 PF03466 LysR substrate binding domain D3093_19000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_19010 PF08544 GHMP kinases C terminal D3093_19010 PF00288 GHMP kinases N terminal domain D3093_19015 PF00579 tRNA synthetases class I (W and Y) D3093_19020 PF17149 Periplasmic sensor domain found in signal transduction proteins D3093_19020 PF00072 Response regulator receiver domain D3093_19020 PF00512 His Kinase A (phospho-acceptor) domain D3093_19020 PF01627 Hpt domain D3093_19020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_19020 PF00672 HAMP domain D3093_19040 PF13378 Enolase C-terminal domain-like D3093_19045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_19045 PF03466 LysR substrate binding domain D3093_19050 PF13417 Glutathione S-transferase, N-terminal domain D3093_19055 PF12706 Beta-lactamase superfamily domain D3093_19100 PF07969 Amidohydrolase family D3093_19110 PF00857 Isochorismatase family D3093_19115 PF13426 PAS domain D3093_19115 PF13493 Domain of unknown function (DUF4118) D3093_19115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_19115 PF08447 PAS fold D3093_19115 PF00512 His Kinase A (phospho-acceptor) domain D3093_19115 PF00989 PAS fold D3093_19120 PF00072 Response regulator receiver domain D3093_19120 PF00196 Bacterial regulatory proteins, luxR family D3093_19125 PF00561 alpha/beta hydrolase fold D3093_19130 PF03707 Bacterial signalling protein N terminal repeat D3093_19130 PF00990 Diguanylate cyclase, GGDEF domain D3093_19130 PF00563 EAL domain D3093_19140 PF07664 Ferrous iron transport protein B C terminus D3093_19140 PF02421 Ferrous iron transport protein B D3093_19140 PF07670 Nucleoside recognition D3093_19160 PF02768 DNA polymerase III beta subunit, C-terminal domain D3093_19160 PF02767 DNA polymerase III beta subunit, central domain D3093_19160 PF00712 DNA polymerase III beta subunit, N-terminal domain D3093_19165 PF02463 RecF/RecN/SMC N terminal domain D3093_19170 PF01751 Toprim domain D3093_19170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_19170 PF00986 DNA gyrase B subunit, carboxyl terminus D3093_19170 PF00204 DNA gyrase B D3093_19175 PF01381 Helix-turn-helix D3093_19185 PF00239 Resolvase, N terminal domain D3093_19200 PF01548 Transposase D3093_19200 PF02371 Transposase IS116/IS110/IS902 family D3093_19215 PF07568 Histidine kinase D3093_19215 PF13581 Histidine kinase-like ATPase domain D3093_19215 PF13426 PAS domain D3093_19250 PF00999 Sodium/hydrogen exchanger family D3093_19250 PF02254 TrkA-N domain D3093_19260 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus D3093_19260 PF00561 alpha/beta hydrolase fold D3093_19265 PF06055 Exopolysaccharide synthesis, ExoD D3093_19335 PF01627 Hpt domain D3093_19335 PF00512 His Kinase A (phospho-acceptor) domain D3093_19335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_19335 PF00072 Response regulator receiver domain D3093_19340 PF00672 HAMP domain D3093_19340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_19340 PF01627 Hpt domain D3093_19340 PF00072 Response regulator receiver domain D3093_19340 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_19340 PF00512 His Kinase A (phospho-acceptor) domain D3093_19345 PF00158 Sigma-54 interaction domain D3093_19345 PF00072 Response regulator receiver domain D3093_19345 PF02954 Bacterial regulatory protein, Fis family D3093_19350 PF00072 Response regulator receiver domain D3093_19350 PF00486 Transcriptional regulatory protein, C terminal D3093_19355 PF01627 Hpt domain D3093_19355 PF00512 His Kinase A (phospho-acceptor) domain D3093_19355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_19355 PF17149 Periplasmic sensor domain found in signal transduction proteins D3093_19355 PF00672 HAMP domain D3093_19355 PF00072 Response regulator receiver domain D3093_19360 PF00990 Diguanylate cyclase, GGDEF domain D3093_19360 PF00563 EAL domain D3093_19360 PF00072 Response regulator receiver domain D3093_19365 PF01943 Polysaccharide biosynthesis protein D3093_19380 PF03808 Glycosyl transferase WecB/TagA/CpsF family D3093_19390 PF00331 Glycosyl hydrolase family 10 D3093_19400 PF02397 Bacterial sugar transferase D3093_19410 PF00535 Glycosyl transferase family 2 D3093_19425 PF00535 Glycosyl transferase family 2 D3093_19450 PF00535 Glycosyl transferase family 2 D3093_19450 PF03552 Cellulose synthase D3093_19450 PF07238 PilZ domain D3093_19495 PF03411 Penicillin-insensitive murein endopeptidase D3093_19500 PF01261 Xylose isomerase-like TIM barrel D3093_19505 PF07729 FCD domain D3093_19505 PF00392 Bacterial regulatory proteins, gntR family D3093_19525 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_19540 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_19545 PF00474 Sodium:solute symporter family D3093_19610 PF00872 Transposase, Mutator family D3093_19635 PF08722 TnsA endonuclease N terminal D3093_19635 PF08721 TnsA endonuclease C terminal D3093_19640 PF00665 Integrase core domain D3093_19645 PF11426 Tn7 transposition regulator TnsC D3093_19645 PF13401 AAA domain D3093_19705 PF01161 Phosphatidylethanolamine-binding protein D3093_19720 PF00512 His Kinase A (phospho-acceptor) domain D3093_19720 PF00072 Response regulator receiver domain D3093_19720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_19720 PF08448 PAS fold D3093_19720 PF13426 PAS domain D3093_19725 PF13545 Crp-like helix-turn-helix domain D3093_19725 PF00027 Cyclic nucleotide-binding domain D3093_19730 PF00085 Thioredoxin D3093_19745 PF01556 DnaJ C terminal domain D3093_19745 PF00226 DnaJ domain D3093_19745 PF00684 DnaJ central domain D3093_19750 PF17269 Family of unknown function (DUF5335) D3093_19770 PF13462 Thioredoxin D3093_19770 PF06965 Na+/H+ antiporter 1 D3093_19790 PF00296 Luciferase-like monooxygenase D3093_19810 PF00011 Hsp20/alpha crystallin family D3093_19825 PF10431 C-terminal, D2-small domain, of ClpB protein D3093_19825 PF07724 AAA domain (Cdc48 subfamily) D3093_19825 PF17871 AAA lid domain D3093_19825 PF02861 Clp amino terminal domain, pathogenicity island component D3093_19825 PF00004 ATPase family associated with various cellular activities (AAA) D3093_19830 PF00012 Hsp70 protein D3093_19835 PF00118 TCP-1/cpn60 chaperonin family D3093_19840 PF00166 Chaperonin 10 Kd subunit D3093_19845 PF01025 GrpE D3093_19890 PF03466 LysR substrate binding domain D3093_19890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_19900 PF00196 Bacterial regulatory proteins, luxR family D3093_19900 PF00072 Response regulator receiver domain D3093_19905 PF13823 Alcohol dehydrogenase GroES-associated D3093_19905 PF00107 Zinc-binding dehydrogenase D3093_19905 PF08240 Alcohol dehydrogenase GroES-like domain D3093_19935 PF10397 Adenylosuccinate lyase C-terminus D3093_19935 PF00206 Lyase D3093_19940 PF02515 CoA-transferase family III D3093_19950 PF00375 Sodium:dicarboxylate symporter family D3093_19955 PF04303 PrpF protein D3093_19960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_19960 PF03466 LysR substrate binding domain D3093_19965 PF03466 LysR substrate binding domain D3093_19965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_20015 PF08525 Opacity-associated protein A N-terminal motif D3093_20015 PF01551 Peptidase family M23 D3093_20015 PF01476 LysM domain D3093_20025 PF01618 MotA/TolQ/ExbB proton channel family D3093_20030 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain D3093_20030 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain D3093_20045 PF00486 Transcriptional regulatory protein, C terminal D3093_20045 PF00072 Response regulator receiver domain D3093_20050 PF00512 His Kinase A (phospho-acceptor) domain D3093_20050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_20050 PF00672 HAMP domain D3093_20050 PF13755 Sensor N-terminal transmembrane domain D3093_20050 PF13756 Stimulus-sensing domain D3093_20060 PF02603 HPr Serine kinase N terminus D3093_20060 PF07475 HPr Serine kinase C-terminal domain D3093_20065 PF03668 P-loop ATPase protein family D3093_20070 PF03830 PTS system sorbose subfamily IIB component D3093_20070 PF03610 PTS system fructose IIA component D3093_20075 PF00381 PTS HPr component phosphorylation site D3093_20080 PF00391 PEP-utilising enzyme, mobile domain D3093_20080 PF05524 PEP-utilising enzyme, N-terminal D3093_20080 PF02896 PEP-utilising enzyme, TIM barrel domain D3093_20085 PF03741 Integral membrane protein TerC family D3093_20095 PF00593 TonB dependent receptor D3093_20095 PF07715 TonB-dependent Receptor Plug Domain D3093_20105 PF01032 FecCD transport family D3093_20110 PF00005 ABC transporter D3093_20120 PF02371 Transposase IS116/IS110/IS902 family D3093_20120 PF01548 Transposase D3093_20180 PF01548 Transposase D3093_20180 PF02371 Transposase IS116/IS110/IS902 family D3093_20185 PF00005 ABC transporter D3093_20205 PF00072 Response regulator receiver domain D3093_20210 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_20210 PF00512 His Kinase A (phospho-acceptor) domain D3093_20210 PF01627 Hpt domain D3093_20210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_20210 PF00672 HAMP domain D3093_20210 PF00072 Response regulator receiver domain D3093_20225 PF03551 Transcriptional regulator PadR-like family D3093_20230 PF01497 Periplasmic binding protein D3093_20235 PF01032 FecCD transport family D3093_20240 PF01032 FecCD transport family D3093_20245 PF00005 ABC transporter D3093_20250 PF01070 FMN-dependent dehydrogenase D3093_20260 PF13640 2OG-Fe(II) oxygenase superfamily D3093_20260 PF18331 PKHD-type hydroxylase C-terminal domain D3093_20265 PF00593 TonB dependent receptor D3093_20265 PF07715 TonB-dependent Receptor Plug Domain D3093_20270 PF03466 LysR substrate binding domain D3093_20270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_20285 PF01569 PAP2 superfamily D3093_20290 PF05221 S-adenosyl-L-homocysteine hydrolase D3093_20290 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain D3093_20300 PF01430 Hsp33 protein D3093_20305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D3093_20305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D3093_20310 PF00202 Aminotransferase class-III D3093_20315 PF01061 ABC-2 type transporter D3093_20320 PF02631 RecX family D3093_20330 PF00830 Ribosomal L28 family D3093_20350 PF00664 ABC transporter transmembrane region D3093_20350 PF00005 ABC transporter D3093_20355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_20355 PF00672 HAMP domain D3093_20370 PF03591 AzlC protein D3093_20375 PF03006 Haemolysin-III related D3093_20380 PF00004 ATPase family associated with various cellular activities (AAA) D3093_20380 PF10431 C-terminal, D2-small domain, of ClpB protein D3093_20380 PF02861 Clp amino terminal domain, pathogenicity island component D3093_20380 PF17871 AAA lid domain D3093_20380 PF07724 AAA domain (Cdc48 subfamily) D3093_20385 PF00293 NUDIX domain D3093_20385 PF13344 Haloacid dehalogenase-like hydrolase D3093_20400 PF13847 Methyltransferase domain D3093_20400 PF17827 PrmC N-terminal domain D3093_20405 PF01548 Transposase D3093_20405 PF02371 Transposase IS116/IS110/IS902 family D3093_20410 PF04480 Protein of unknown function (DUF559) D3093_20415 PF03462 PCRF domain D3093_20415 PF00472 RF-1 domain D3093_20420 PF01488 Shikimate / quinate 5-dehydrogenase D3093_20420 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D3093_20420 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D3093_20425 PF04551 GcpE protein D3093_20435 PF00391 PEP-utilising enzyme, mobile domain D3093_20435 PF01590 GAF domain D3093_20435 PF02896 PEP-utilising enzyme, TIM barrel domain D3093_20435 PF05524 PEP-utilising enzyme, N-terminal D3093_20440 PF03060 Nitronate monooxygenase D3093_20445 PF00696 Amino acid kinase family D3093_20445 PF13840 ACT domain D3093_20445 PF01842 ACT domain D3093_20455 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D3093_20460 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus D3093_20460 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D3093_20465 PF00309 Sigma-54 factor, Activator interacting domain (AID) D3093_20465 PF04552 Sigma-54, DNA binding domain D3093_20465 PF04963 Sigma-54 factor, core binding domain D3093_20470 PF00005 ABC transporter D3093_20485 PF01380 SIS domain D3093_20485 PF00571 CBS domain D3093_20490 PF01612 3'-5' exonuclease D3093_20490 PF00570 HRDC domain D3093_20500 PF04321 RmlD substrate binding domain D3093_20505 PF07690 Major Facilitator Superfamily D3093_20510 PF02673 Bacitracin resistance protein BacA D3093_20515 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D3093_20515 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_20520 PF01493 GXGXG motif D3093_20520 PF00310 Glutamine amidotransferases class-II D3093_20520 PF04898 Glutamate synthase central domain D3093_20520 PF01645 Conserved region in glutamate synthase D3093_20525 PF00583 Acetyltransferase (GNAT) family D3093_20525 PF00814 Glycoprotease family D3093_20530 PF13417 Glutathione S-transferase, N-terminal domain D3093_20530 PF00043 Glutathione S-transferase, C-terminal domain D3093_20545 PF02417 Chromate transporter D3093_20550 PF00512 His Kinase A (phospho-acceptor) domain D3093_20550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_20550 PF00672 HAMP domain D3093_20555 PF00486 Transcriptional regulatory protein, C terminal D3093_20555 PF00072 Response regulator receiver domain D3093_20580 PF00528 Binding-protein-dependent transport system inner membrane component D3093_20585 PF00005 ABC transporter D3093_20605 PF07687 Peptidase dimerisation domain D3093_20605 PF01546 Peptidase family M20/M25/M40 D3093_20610 PF01292 Prokaryotic cytochrome b561 D3093_20615 PF13247 4Fe-4S dicluster domain D3093_20620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3093_20620 PF00384 Molybdopterin oxidoreductase D3093_20620 PF01568 Molydopterin dinucleotide binding domain D3093_20655 PF02445 Quinolinate synthetase A protein D3093_20660 PF00890 FAD binding domain D3093_20660 PF02910 Fumarate reductase flavoprotein C-term D3093_20665 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D3093_20665 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D3093_20670 PF03275 UDP-galactopyranose mutase D3093_20675 PF00478 IMP dehydrogenase / GMP reductase domain D3093_20680 PF01546 Peptidase family M20/M25/M40 D3093_20680 PF07687 Peptidase dimerisation domain D3093_20685 PF01546 Peptidase family M20/M25/M40 D3093_20685 PF07687 Peptidase dimerisation domain D3093_20690 PF09349 OHCU decarboxylase D3093_20690 PF01014 Uricase D3093_20695 PF00576 HIUase/Transthyretin family D3093_20705 PF03466 LysR substrate binding domain D3093_20705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_20710 PF00356 Bacterial regulatory proteins, lacI family D3093_20710 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D3093_20715 PF12826 Helix-hairpin-helix motif D3093_20715 PF08459 UvrC Helix-hairpin-helix N-terminal D3093_20715 PF01541 GIY-YIG catalytic domain D3093_20715 PF02151 UvrB/uvrC motif D3093_20760 PF11842 Domain of unknown function (DUF3362) D3093_20760 PF08497 Radical SAM N-terminal D3093_20760 PF04055 Radical SAM superfamily D3093_20770 PF00877 NlpC/P60 family D3093_20775 PF14824 Sirohaem biosynthesis protein central D3093_20775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3093_20775 PF10414 Sirohaem synthase dimerisation region D3093_20780 PF04324 BFD-like [2Fe-2S] binding domain D3093_20780 PF00384 Molybdopterin oxidoreductase D3093_20780 PF01568 Molydopterin dinucleotide binding domain D3093_20780 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3093_20785 PF00355 Rieske [2Fe-2S] domain D3093_20790 PF04324 BFD-like [2Fe-2S] binding domain D3093_20790 PF18267 Rubredoxin NAD+ reductase C-terminal domain D3093_20790 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D3093_20790 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D3093_20790 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_20800 PF00528 Binding-protein-dependent transport system inner membrane component D3093_20805 PF00005 ABC transporter D3093_20810 PF08376 Nitrate and nitrite sensing D3093_20810 PF03861 ANTAR domain D3093_20825 PF01042 Endoribonuclease L-PSP D3093_20830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_20830 PF03466 LysR substrate binding domain D3093_20845 PF02195 ParB-like nuclease domain D3093_20845 PF17762 HTH domain found in ParB protein D3093_20850 PF13614 AAA domain D3093_20865 PF12320 Type 5 capsule protein repressor C-terminal domain D3093_20865 PF00149 Calcineurin-like phosphoesterase D3093_20905 PF01361 Tautomerase enzyme D3093_20910 PF00596 Class II Aldolase and Adducin N-terminal domain D3093_20915 PF00072 Response regulator receiver domain D3093_20915 PF02954 Bacterial regulatory protein, Fis family D3093_20915 PF00158 Sigma-54 interaction domain D3093_20920 PF00512 His Kinase A (phospho-acceptor) domain D3093_20920 PF13188 PAS domain D3093_20920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_20920 PF00072 Response regulator receiver domain D3093_20920 PF08448 PAS fold D3093_20925 PF04216 Protein involved in formate dehydrogenase formation D3093_20930 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3093_20930 PF00384 Molybdopterin oxidoreductase D3093_20930 PF01568 Molydopterin dinucleotide binding domain D3093_20935 PF13247 4Fe-4S dicluster domain D3093_20935 PF09163 Formate dehydrogenase N, transmembrane D3093_20940 PF01292 Prokaryotic cytochrome b561 D3093_20945 PF02634 FdhD/NarQ family D3093_20955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_20955 PF00512 His Kinase A (phospho-acceptor) domain D3093_20960 PF00072 Response regulator receiver domain D3093_20960 PF00486 Transcriptional regulatory protein, C terminal D3093_20965 PF01339 CheB methylesterase D3093_20965 PF00072 Response regulator receiver domain D3093_20970 PF00072 Response regulator receiver domain D3093_20970 PF01584 CheW-like domain D3093_20970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_20970 PF01627 Hpt domain D3093_20975 PF00672 HAMP domain D3093_20975 PF02203 Tar ligand binding domain homologue D3093_20975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_20985 PF01739 CheR methyltransferase, SAM binding domain D3093_20985 PF03705 CheR methyltransferase, all-alpha domain D3093_20995 PF02261 Aspartate decarboxylase D3093_21015 PF01209 ubiE/COQ5 methyltransferase family D3093_21020 PF03975 CheD chemotactic sensory transduction D3093_21025 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D3093_21035 PF01648 4'-phosphopantetheinyl transferase superfamily D3093_21040 PF01259 SAICAR synthetase D3093_21045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3093_21045 PF01842 ACT domain D3093_21045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3093_21050 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D3093_21055 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D3093_21055 PF00361 Proton-conducting membrane transporter D3093_21055 PF13244 Domain of unknown function (DUF4040) D3093_21055 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D3093_21060 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D3093_21065 PF00361 Proton-conducting membrane transporter D3093_21070 PF01899 Na+/H+ ion antiporter subunit D3093_21075 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D3093_21080 PF03334 Na+/H+ antiporter subunit D3093_21105 PF16363 GDP-mannose 4,6 dehydratase D3093_21110 PF00664 ABC transporter transmembrane region D3093_21110 PF00005 ABC transporter D3093_21120 PF00005 ABC transporter D3093_21155 PF13458 Periplasmic binding protein D3093_21160 PF00529 HlyD membrane-fusion protein of T1SS D3093_21165 PF00005 ABC transporter D3093_21165 PF00664 ABC transporter transmembrane region D3093_21165 PF03412 Peptidase C39 family D3093_21180 PF00005 ABC transporter D3093_21180 PF17912 MalK OB fold domain D3093_21185 PF00528 Binding-protein-dependent transport system inner membrane component D3093_21190 PF00528 Binding-protein-dependent transport system inner membrane component D3093_21200 PF00171 Aldehyde dehydrogenase family D3093_21210 PF00378 Enoyl-CoA hydratase/isomerase D3093_21220 PF02515 CoA-transferase family III D3093_21225 PF00106 short chain dehydrogenase D3093_21230 PF00356 Bacterial regulatory proteins, lacI family D3093_21235 PF00593 TonB dependent receptor D3093_21235 PF07715 TonB-dependent Receptor Plug Domain D3093_21260 PF13722 5TM C-terminal transporter carbon starvation CstA D3093_21260 PF02554 Carbon starvation protein CstA D3093_21265 PF04328 Selenoprotein, putative D3093_21275 PF00107 Zinc-binding dehydrogenase D3093_21275 PF13823 Alcohol dehydrogenase GroES-associated D3093_21275 PF08240 Alcohol dehydrogenase GroES-like domain D3093_21280 PF00106 short chain dehydrogenase D3093_21290 PF00392 Bacterial regulatory proteins, gntR family D3093_21290 PF07729 FCD domain D3093_21300 PF00528 Binding-protein-dependent transport system inner membrane component D3093_21310 PF00005 ABC transporter D3093_21335 PF02540 NAD synthase D3093_21335 PF00795 Carbon-nitrogen hydrolase D3093_21340 PF00672 HAMP domain D3093_21340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_21345 PF02423 Ornithine cyclodeaminase/mu-crystallin family D3093_21350 PF00135 Carboxylesterase family D3093_21355 PF00005 ABC transporter D3093_21365 PF00528 Binding-protein-dependent transport system inner membrane component D3093_21380 PF07690 Major Facilitator Superfamily D3093_21385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_21385 PF03466 LysR substrate binding domain D3093_21390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_21395 PF00528 Binding-protein-dependent transport system inner membrane component D3093_21435 PF16998 17 kDa outer membrane surface antigen D3093_21435 PF05433 Glycine zipper 2TM domain D3093_21445 PF01679 Proteolipid membrane potential modulator D3093_21450 PF12729 Four helix bundle sensory module for signal transduction D3093_21450 PF00672 HAMP domain D3093_21450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_21470 PF01475 Ferric uptake regulator family D3093_21490 PF00990 Diguanylate cyclase, GGDEF domain D3093_21490 PF03707 Bacterial signalling protein N terminal repeat D3093_21490 PF00563 EAL domain D3093_21500 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3093_21500 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D3093_21505 PF03450 CO dehydrogenase flavoprotein C-terminal domain D3093_21505 PF00941 FAD binding domain in molybdopterin dehydrogenase D3093_21510 PF01799 [2Fe-2S] binding domain D3093_21510 PF00111 2Fe-2S iron-sulfur cluster binding domain D3093_21515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_21515 PF03466 LysR substrate binding domain D3093_21525 PF02515 CoA-transferase family III D3093_21535 PF03328 HpcH/HpaI aldolase/citrate lyase family D3093_21540 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_21540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_21540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_21580 PF00534 Glycosyl transferases group 1 D3093_21580 PF13439 Glycosyltransferase Family 4 D3093_21585 PF00535 Glycosyl transferase family 2 D3093_21600 PF04055 Radical SAM superfamily D3093_21615 PF00994 Probable molybdopterin binding domain D3093_21620 PF01464 Transglycosylase SLT domain D3093_21625 PF03167 Uracil DNA glycosylase superfamily D3093_21650 PF00027 Cyclic nucleotide-binding domain D3093_21650 PF13545 Crp-like helix-turn-helix domain D3093_21675 PF00753 Metallo-beta-lactamase superfamily D3093_21680 PF02082 Transcriptional regulator D3093_21695 PF00528 Binding-protein-dependent transport system inner membrane component D3093_21700 PF00528 Binding-protein-dependent transport system inner membrane component D3093_21705 PF17850 CysA C-terminal regulatory domain D3093_21705 PF12857 TOBE-like domain D3093_21705 PF00005 ABC transporter D3093_21720 PF00999 Sodium/hydrogen exchanger family D3093_21720 PF02254 TrkA-N domain D3093_21720 PF02080 TrkA-C domain D3093_21725 PF00486 Transcriptional regulatory protein, C terminal D3093_21725 PF00072 Response regulator receiver domain D3093_21750 PF02540 NAD synthase D3093_21755 PF13537 Glutamine amidotransferase domain D3093_21755 PF00733 Asparagine synthase D3093_21760 PF00501 AMP-binding enzyme D3093_21760 PF13193 AMP-binding enzyme C-terminal domain D3093_21780 PF00534 Glycosyl transferases group 1 D3093_21780 PF00862 Sucrose synthase D3093_21785 PF13439 Glycosyltransferase Family 4 D3093_21785 PF00534 Glycosyl transferases group 1 D3093_21790 PF00535 Glycosyl transferase family 2 D3093_21800 PF02397 Bacterial sugar transferase D3093_21810 PF00150 Cellulase (glycosyl hydrolase family 5) D3093_21810 PF00553 Cellulose binding domain D3093_21820 PF00331 Glycosyl hydrolase family 10 D3093_21825 PF02706 Chain length determinant protein D3093_21825 PF13614 AAA domain D3093_21825 PF13807 G-rich domain on putative tyrosine kinase D3093_21830 PF03808 Glycosyl transferase WecB/TagA/CpsF family D3093_21840 PF17191 RecG wedge domain D3093_21840 PF00271 Helicase conserved C-terminal domain D3093_21840 PF00270 DEAD/DEAH box helicase D3093_21845 PF00300 Histidine phosphatase superfamily (branch 1) D3093_21865 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D3093_21865 PF00128 Alpha amylase, catalytic domain D3093_21870 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB D3093_21870 PF00512 His Kinase A (phospho-acceptor) domain D3093_21870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_21870 PF00672 HAMP domain D3093_21870 PF08448 PAS fold D3093_21880 PF16998 17 kDa outer membrane surface antigen D3093_21880 PF05433 Glycine zipper 2TM domain D3093_21890 PF01634 ATP phosphoribosyltransferase D3093_21895 PF00815 Histidinol dehydrogenase D3093_21900 PF06793 Uncharacterised protein family (UPF0262) D3093_21905 PF01451 Low molecular weight phosphotyrosine protein phosphatase D3093_21910 PF00672 HAMP domain D3093_21910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_21910 PF00512 His Kinase A (phospho-acceptor) domain D3093_21910 PF01627 Hpt domain D3093_21910 PF00072 Response regulator receiver domain D3093_21910 PF17149 Periplasmic sensor domain found in signal transduction proteins D3093_21920 PF01176 Translation initiation factor 1A / IF-1 D3093_21925 PF02545 Maf-like protein D3093_21930 PF10150 Ribonuclease E/G family D3093_21930 PF00575 S1 RNA binding domain D3093_21935 PF03884 DNA gyrase inhibitor YacG D3093_21965 PF13614 AAA domain D3093_21970 PF01037 Lrp/AsnC ligand binding domain D3093_21970 PF13404 AsnC-type helix-turn-helix domain D3093_21975 PF00491 Arginase family D3093_21980 PF00202 Aminotransferase class-III D3093_22000 PF00440 Bacterial regulatory proteins, tetR family D3093_22015 PF07237 Protein of unknown function (DUF1428) D3093_22025 PF00202 Aminotransferase class-III D3093_22030 PF00171 Aldehyde dehydrogenase family D3093_22035 PF01381 Helix-turn-helix D3093_22035 PF07883 Cupin domain D3093_22040 PF00528 Binding-protein-dependent transport system inner membrane component D3093_22045 PF00528 Binding-protein-dependent transport system inner membrane component D3093_22050 PF13416 Bacterial extracellular solute-binding protein D3093_22055 PF08402 TOBE domain D3093_22055 PF00005 ABC transporter D3093_22060 PF03466 LysR substrate binding domain D3093_22060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_22065 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_22065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_22065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_22070 PF02515 CoA-transferase family III D3093_22100 PF02080 TrkA-C domain D3093_22100 PF03600 Citrate transporter D3093_22105 PF00248 Aldo/keto reductase family D3093_22110 PF07690 Major Facilitator Superfamily D3093_22115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_22115 PF03466 LysR substrate binding domain D3093_22125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3093_22125 PF00529 HlyD membrane-fusion protein of T1SS D3093_22130 PF04632 Fusaric acid resistance protein family D3093_22135 PF07869 Protein of unknown function (DUF1656) D3093_22170 PF05433 Glycine zipper 2TM domain D3093_22170 PF16998 17 kDa outer membrane surface antigen D3093_22175 PF00501 AMP-binding enzyme D3093_22175 PF13193 AMP-binding enzyme C-terminal domain D3093_22180 PF01925 Sulfite exporter TauE/SafE D3093_22185 PF00005 ABC transporter D3093_22190 PF13411 MerR HTH family regulatory protein D3093_22195 PF02627 Carboxymuconolactone decarboxylase family D3093_22205 PF03458 UPF0126 domain D3093_22210 PF02678 Pirin D3093_22210 PF17954 Quercetinase C-terminal cupin domain D3093_22235 PF00403 Heavy-metal-associated domain D3093_22240 PF00376 MerR family regulatory protein D3093_22240 PF09278 MerR, DNA binding D3093_22270 PF13243 Squalene-hopene cyclase C-terminal domain D3093_22270 PF13249 Squalene-hopene cyclase N-terminal domain D3093_22295 PF00072 Response regulator receiver domain D3093_22305 PF00512 His Kinase A (phospho-acceptor) domain D3093_22305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_22305 PF02702 Osmosensitive K+ channel His kinase sensor domain D3093_22305 PF13493 Domain of unknown function (DUF4118) D3093_22305 PF13492 GAF domain D3093_22315 PF01595 Cyclin M transmembrane N-terminal domain D3093_22315 PF03471 Transporter associated domain D3093_22315 PF00571 CBS domain D3093_22320 PF01098 Cell cycle protein D3093_22340 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D3093_22340 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D3093_22350 PF14698 Argininosuccinate lyase C-terminal D3093_22350 PF00206 Lyase D3093_22355 PF08534 Redoxin D3093_22365 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3093_22365 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3093_22370 PF01012 Electron transfer flavoprotein domain D3093_22370 PF00766 Electron transfer flavoprotein FAD-binding domain D3093_22375 PF01012 Electron transfer flavoprotein domain D3093_22380 PF01923 Cobalamin adenosyltransferase D3093_22390 PF00232 Glycosyl hydrolase family 1 D3093_22440 PF02653 Branched-chain amino acid transport system / permease component D3093_22450 PF00005 ABC transporter D3093_22455 PF00672 HAMP domain D3093_22455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_22460 PF03739 Lipopolysaccharide export system permease LptF/LptG D3093_22485 PF07559 Flagellar basal body protein FlaE D3093_22485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3093_22485 PF07559 Flagellar basal body protein FlaE D3093_22485 PF00460 Flagella basal body rod protein D3093_22485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3093_22485 PF00460 Flagella basal body rod protein D3093_22505 PF00512 His Kinase A (phospho-acceptor) domain D3093_22505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_22510 PF00149 Calcineurin-like phosphoesterase D3093_22510 PF02872 5'-nucleotidase, C-terminal domain D3093_22515 PF00155 Aminotransferase class I and II D3093_22515 PF00392 Bacterial regulatory proteins, gntR family D3093_22520 PF02627 Carboxymuconolactone decarboxylase family D3093_22525 PF00440 Bacterial regulatory proteins, tetR family D3093_22535 PF00881 Nitroreductase family D3093_22540 PF07685 CobB/CobQ-like glutamine amidotransferase domain D3093_22540 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D3093_22545 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3093_22550 PF01888 CbiD D3093_22555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3093_22565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3093_22570 PF02571 Precorrin-6x reductase CbiJ/CobK D3093_22575 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3093_22580 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3093_22585 PF02570 Precorrin-8X methylmutase D3093_22590 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D3093_22595 PF02514 CobN/Magnesium Chelatase D3093_22600 PF02492 CobW/HypB/UreG, nucleotide-binding domain D3093_22600 PF07683 Cobalamin synthesis protein cobW C-terminal domain D3093_22605 PF00005 ABC transporter D3093_22605 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_22610 PF00005 ABC transporter D3093_22620 PF02653 Branched-chain amino acid transport system / permease component D3093_22630 PF00501 AMP-binding enzyme D3093_22630 PF13193 AMP-binding enzyme C-terminal domain D3093_22635 PF00106 short chain dehydrogenase D3093_22640 PF02798 Glutathione S-transferase, N-terminal domain D3093_22640 PF00043 Glutathione S-transferase, C-terminal domain D3093_22660 PF00128 Alpha amylase, catalytic domain D3093_22665 PF02446 4-alpha-glucanotransferase D3093_22685 PF01266 FAD dependent oxidoreductase D3093_22695 PF00672 HAMP domain D3093_22695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_22695 PF00512 His Kinase A (phospho-acceptor) domain D3093_22700 PF00486 Transcriptional regulatory protein, C terminal D3093_22700 PF00072 Response regulator receiver domain D3093_22705 PF00512 His Kinase A (phospho-acceptor) domain D3093_22705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_22705 PF01627 Hpt domain D3093_22705 PF00672 HAMP domain D3093_22705 PF00072 Response regulator receiver domain D3093_22710 PF00313 'Cold-shock' DNA-binding domain D3093_22720 PF12802 MarR family D3093_22725 PF01063 Amino-transferase class IV D3093_22730 PF12344 Ultra-violet resistance protein B D3093_22730 PF00271 Helicase conserved C-terminal domain D3093_22730 PF04851 Type III restriction enzyme, res subunit D3093_22730 PF02151 UvrB/uvrC motif D3093_22730 PF17757 UvrB interaction domain D3093_22800 PF02706 Chain length determinant protein D3093_22800 PF13614 AAA domain D3093_22800 PF13807 G-rich domain on putative tyrosine kinase D3093_22805 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D3093_22805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3093_22815 PF13579 Glycosyl transferase 4-like domain D3093_22815 PF00534 Glycosyl transferases group 1 D3093_22830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_22830 PF03466 LysR substrate binding domain D3093_22835 PF01546 Peptidase family M20/M25/M40 D3093_22835 PF07687 Peptidase dimerisation domain D3093_22840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_22845 PF00528 Binding-protein-dependent transport system inner membrane component D3093_22850 PF12911 N-terminal TM domain of oligopeptide transport permease C D3093_22850 PF00528 Binding-protein-dependent transport system inner membrane component D3093_22855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_22855 PF00005 ABC transporter D3093_22865 PF07687 Peptidase dimerisation domain D3093_22865 PF01546 Peptidase family M20/M25/M40 D3093_22870 PF00850 Histone deacetylase domain D3093_22875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3093_22875 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3093_22880 PF05853 beta-keto acid cleavage enzyme D3093_22895 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_22900 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_22910 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain D3093_22910 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain D3093_22915 PF17042 Nucleotide-binding C-terminal domain D3093_22915 PF07005 Sugar-binding N-terminal domain D3093_22920 PF00027 Cyclic nucleotide-binding domain D3093_22920 PF00325 Bacterial regulatory proteins, crp family D3093_22925 PF00158 Sigma-54 interaction domain D3093_22925 PF02954 Bacterial regulatory protein, Fis family D3093_22925 PF00072 Response regulator receiver domain D3093_22935 PF00216 Bacterial DNA-binding protein D3093_22940 PF04542 Sigma-70 region 2 D3093_22940 PF08281 Sigma-70, region 4 D3093_22950 PF01027 Inhibitor of apoptosis-promoting Bax1 D3093_22960 PF07690 Major Facilitator Superfamily D3093_22970 PF06796 Periplasmic nitrate reductase protein NapE D3093_22975 PF13187 4Fe-4S dicluster domain D3093_22975 PF12838 4Fe-4S dicluster domain D3093_22985 PF00384 Molybdopterin oxidoreductase D3093_22985 PF01568 Molydopterin dinucleotide binding domain D3093_22985 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3093_22990 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) D3093_22995 PF03264 NapC/NirT cytochrome c family, N-terminal region D3093_23000 PF00216 Bacterial DNA-binding protein D3093_23010 PF00072 Response regulator receiver domain D3093_23015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_23015 PF00512 His Kinase A (phospho-acceptor) domain D3093_23025 PF03626 Prokaryotic Cytochrome C oxidase subunit IV D3093_23030 PF00510 Cytochrome c oxidase subunit III D3093_23035 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3093_23040 PF06481 COX Aromatic Rich Motif D3093_23040 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D3093_23045 PF00083 Sugar (and other) transporter D3093_23045 PF07690 Major Facilitator Superfamily D3093_23060 PF01256 Carbohydrate kinase D3093_23065 PF13456 Reverse transcriptase-like D3093_23065 PF00300 Histidine phosphatase superfamily (branch 1) D3093_23075 PF03707 Bacterial signalling protein N terminal repeat D3093_23075 PF00563 EAL domain D3093_23075 PF00990 Diguanylate cyclase, GGDEF domain D3093_23080 PF02028 BCCT, betaine/carnitine/choline family transporter D3093_23090 PF03706 Lysylphosphatidylglycerol synthase TM region D3093_23095 PF02386 Cation transport protein D3093_23125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_23125 PF03466 LysR substrate binding domain D3093_23130 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D3093_23135 PF00384 Molybdopterin oxidoreductase D3093_23135 PF01568 Molydopterin dinucleotide binding domain D3093_23135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3093_23140 PF12800 4Fe-4S binding domain D3093_23140 PF13247 4Fe-4S dicluster domain D3093_23145 PF00037 4Fe-4S binding domain D3093_23145 PF12798 4Fe-4S binding domain D3093_23150 PF00361 Proton-conducting membrane transporter D3093_23155 PF00146 NADH dehydrogenase D3093_23160 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D3093_23160 PF00361 Proton-conducting membrane transporter D3093_23165 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D3093_23170 PF00361 Proton-conducting membrane transporter D3093_23170 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D3093_23175 PF00374 Nickel-dependent hydrogenase D3093_23175 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D3093_23175 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D3093_23180 PF12838 4Fe-4S dicluster domain D3093_23185 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D3093_23190 PF07450 Formate hydrogenlyase maturation protein HycH D3093_23195 PF01750 Hydrogenase maturation protease D3093_23200 PF01226 Formate/nitrite transporter D3093_23205 PF02634 FdhD/NarQ family D3093_23210 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D3093_23215 PF01455 HupF/HypC family D3093_23220 PF04955 HupE / UreJ protein D3093_23245 PF01168 Alanine racemase, N-terminal domain D3093_23245 PF00842 Alanine racemase, C-terminal domain D3093_23265 PF00211 Adenylate and Guanylate cyclase catalytic domain D3093_23265 PF00672 HAMP domain D3093_23265 PF02743 Cache domain D3093_23270 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_23290 PF01047 MarR family D3093_23295 PF02566 OsmC-like protein D3093_23310 PF00072 Response regulator receiver domain D3093_23315 PF00072 Response regulator receiver domain D3093_23315 PF17149 Periplasmic sensor domain found in signal transduction proteins D3093_23315 PF01627 Hpt domain D3093_23315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_23315 PF00512 His Kinase A (phospho-acceptor) domain D3093_23315 PF00672 HAMP domain D3093_23320 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D3093_23325 PF00528 Binding-protein-dependent transport system inner membrane component D3093_23330 PF00571 CBS domain D3093_23330 PF00005 ABC transporter D3093_23335 PF01432 Peptidase family M3 D3093_23340 PF05962 HutD D3093_23365 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_23375 PF00005 ABC transporter D3093_23390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3093_23390 PF01568 Molydopterin dinucleotide binding domain D3093_23390 PF00384 Molybdopterin oxidoreductase D3093_23395 PF03916 Polysulphide reductase, NrfD D3093_23400 PF13247 4Fe-4S dicluster domain D3093_23410 PF03466 LysR substrate binding domain D3093_23410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_23415 PF00248 Aldo/keto reductase family D3093_23420 PF00672 HAMP domain D3093_23420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_23425 PF00005 ABC transporter D3093_23425 PF06472 ABC transporter transmembrane region 2 D3093_23435 PF02195 ParB-like nuclease domain D3093_23435 PF17762 HTH domain found in ParB protein D3093_23440 PF13614 AAA domain D3093_23445 PF01435 Peptidase family M48 D3093_23450 PF03358 NADPH-dependent FMN reductase D3093_23450 PF01566 Natural resistance-associated macrophage protein D3093_23465 PF01261 Xylose isomerase-like TIM barrel D3093_23475 PF00535 Glycosyl transferase family 2 D3093_23490 PF04932 O-Antigen ligase D3093_23495 PF13807 G-rich domain on putative tyrosine kinase D3093_23495 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D3093_23495 PF02706 Chain length determinant protein D3093_23500 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D3093_23500 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D3093_23500 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D3093_23525 PF00535 Glycosyl transferase family 2 D3093_23535 PF01037 Lrp/AsnC ligand binding domain D3093_23540 PF14748 Pyrroline-5-carboxylate reductase dimerisation D3093_23540 PF03807 NADP oxidoreductase coenzyme F420-dependent D3093_23545 PF01619 Proline dehydrogenase D3093_23545 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D3093_23545 PF00171 Aldehyde dehydrogenase family D3093_23545 PF14850 DNA-binding domain of Proline dehydrogenase D3093_23585 PF04542 Sigma-70 region 2 D3093_23585 PF08281 Sigma-70, region 4 D3093_23595 PF01022 Bacterial regulatory protein, arsR family D3093_23600 PF00581 Rhodanese-like domain D3093_23605 PF00873 AcrB/AcrD/AcrF family D3093_23620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_23620 PF00512 His Kinase A (phospho-acceptor) domain D3093_23625 PF00072 Response regulator receiver domain D3093_23625 PF00196 Bacterial regulatory proteins, luxR family D3093_23630 PF00085 Thioredoxin D3093_23645 PF00425 chorismate binding enzyme D3093_23645 PF04715 Anthranilate synthase component I, N terminal region D3093_23650 PF01063 Amino-transferase class IV D3093_23660 PF02163 Peptidase family M50 D3093_23660 PF00571 CBS domain D3093_23675 PF01037 Lrp/AsnC ligand binding domain D3093_23680 PF03466 LysR substrate binding domain D3093_23680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_23685 PF07690 Major Facilitator Superfamily D3093_23690 PF00392 Bacterial regulatory proteins, gntR family D3093_23690 PF07729 FCD domain D3093_23695 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_23700 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D3093_23700 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_23705 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_23710 PF05661 Protein of unknown function (DUF808) D3093_23730 PF01966 HD domain D3093_23735 PF00005 ABC transporter D3093_23740 PF01061 ABC-2 type transporter D3093_23745 PF04828 Glutathione-dependent formaldehyde-activating enzyme D3093_23750 PF01425 Amidase D3093_23755 PF01425 Amidase D3093_23760 PF00857 Isochorismatase family D3093_23765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_23780 PF00005 ABC transporter D3093_23780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_23785 PF00005 ABC transporter D3093_23785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_23790 PF00857 Isochorismatase family D3093_23795 PF05145 Transition state regulatory protein AbrB D3093_23800 PF07729 FCD domain D3093_23800 PF00392 Bacterial regulatory proteins, gntR family D3093_23810 PF03814 Potassium-transporting ATPase A subunit D3093_23820 PF02669 K+-transporting ATPase, c chain D3093_23825 PF13492 GAF domain D3093_23825 PF00512 His Kinase A (phospho-acceptor) domain D3093_23825 PF02702 Osmosensitive K+ channel His kinase sensor domain D3093_23825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_23825 PF13493 Domain of unknown function (DUF4118) D3093_23830 PF00072 Response regulator receiver domain D3093_23830 PF00486 Transcriptional regulatory protein, C terminal D3093_23835 PF03741 Integral membrane protein TerC family D3093_23840 PF00211 Adenylate and Guanylate cyclase catalytic domain D3093_23845 PF00027 Cyclic nucleotide-binding domain D3093_23845 PF13545 Crp-like helix-turn-helix domain D3093_23850 PF04264 YceI-like domain D3093_23865 PF00196 Bacterial regulatory proteins, luxR family D3093_23865 PF00072 Response regulator receiver domain D3093_23870 PF00196 Bacterial regulatory proteins, luxR family D3093_23870 PF00072 Response regulator receiver domain D3093_23875 PF00512 His Kinase A (phospho-acceptor) domain D3093_23875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_23875 PF00989 PAS fold D3093_23885 PF02321 Outer membrane efflux protein D3093_23890 PF00873 AcrB/AcrD/AcrF family D3093_23895 PF00873 AcrB/AcrD/AcrF family D3093_23900 PF13533 Biotin-lipoyl like D3093_23905 PF00155 Aminotransferase class I and II D3093_23910 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain D3093_23910 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain D3093_23920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_23920 PF00672 HAMP domain D3093_23925 PF00501 AMP-binding enzyme D3093_23925 PF13193 AMP-binding enzyme C-terminal domain D3093_23930 PF00528 Binding-protein-dependent transport system inner membrane component D3093_23935 PF08402 TOBE domain D3093_23935 PF00005 ABC transporter D3093_23945 PF00378 Enoyl-CoA hydratase/isomerase D3093_24005 PF07715 TonB-dependent Receptor Plug Domain D3093_24005 PF00593 TonB dependent receptor D3093_24015 PF02311 AraC-like ligand binding domain D3093_24015 PF12833 Helix-turn-helix domain D3093_24025 PF07715 TonB-dependent Receptor Plug Domain D3093_24025 PF00593 TonB dependent receptor D3093_24040 PF01642 Methylmalonyl-CoA mutase D3093_24040 PF02310 B12 binding domain D3093_24045 PF01642 Methylmalonyl-CoA mutase D3093_24055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_24055 PF03466 LysR substrate binding domain D3093_24060 PF08267 Cobalamin-independent synthase, N-terminal domain D3093_24060 PF01717 Cobalamin-independent synthase, Catalytic domain D3093_24065 PF06114 IrrE N-terminal-like domain D3093_24065 PF09856 Predicted transcriptional regulator (DUF2083) D3093_24065 PF01381 Helix-turn-helix D3093_24075 PF02867 Ribonucleotide reductase, barrel domain D3093_24075 PF00317 Ribonucleotide reductase, all-alpha domain D3093_24075 PF03477 ATP cone domain D3093_24085 PF00285 Citrate synthase, C-terminal domain D3093_24090 PF00694 Aconitase C-terminal domain D3093_24090 PF00330 Aconitase family (aconitate hydratase) D3093_24095 PF04303 PrpF protein D3093_24115 PF07690 Major Facilitator Superfamily D3093_24160 PF00437 Type II/IV secretion system protein D3093_24165 PF01883 Iron-sulfur cluster assembly protein D3093_24165 PF10609 NUBPL iron-transfer P-loop NTPase D3093_24175 PF04972 BON domain D3093_24175 PF00263 Bacterial type II and III secretion system protein D3093_24175 PF13629 Pilus formation protein N terminal region D3093_24200 PF05247 Flagellar transcriptional activator (FlhD) D3093_24205 PF01548 Transposase D3093_24205 PF02371 Transposase IS116/IS110/IS902 family D3093_24215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_24215 PF00072 Response regulator receiver domain D3093_24215 PF09456 RcsC Alpha-Beta-Loop (ABL) D3093_24215 PF00512 His Kinase A (phospho-acceptor) domain D3093_24220 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D3093_24225 PF02254 TrkA-N domain D3093_24225 PF07885 Ion channel D3093_24230 PF00270 DEAD/DEAH box helicase D3093_24230 PF00271 Helicase conserved C-terminal domain D3093_24230 PF03461 TRCF domain D3093_24230 PF17757 UvrB interaction domain D3093_24230 PF02559 CarD-like/TRCF domain D3093_24245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_24245 PF13426 PAS domain D3093_24245 PF00072 Response regulator receiver domain D3093_24250 PF00465 Iron-containing alcohol dehydrogenase D3093_24255 PF00171 Aldehyde dehydrogenase family D3093_24260 PF00005 ABC transporter D3093_24265 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_24265 PF00005 ABC transporter D3093_24270 PF02653 Branched-chain amino acid transport system / permease component D3093_24275 PF13458 Periplasmic binding protein D3093_24290 PF03466 LysR substrate binding domain D3093_24290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_24295 PF01970 Tripartite tricarboxylate transporter TctA family D3093_24315 PF00701 Dihydrodipicolinate synthetase family D3093_24320 PF09339 IclR helix-turn-helix domain D3093_24320 PF01614 Bacterial transcriptional regulator D3093_24325 PF02734 DAK2 domain D3093_24325 PF02733 Dak1 domain D3093_24340 PF00873 AcrB/AcrD/AcrF family D3093_24345 PF13533 Biotin-lipoyl like D3093_24370 PF00701 Dihydrodipicolinate synthetase family D3093_24375 PF00528 Binding-protein-dependent transport system inner membrane component D3093_24380 PF08402 TOBE domain D3093_24380 PF00005 ABC transporter D3093_24390 PF02913 FAD linked oxidases, C-terminal domain D3093_24390 PF01565 FAD binding domain D3093_24395 PF00440 Bacterial regulatory proteins, tetR family D3093_24405 PF00166 Chaperonin 10 Kd subunit D3093_24410 PF00118 TCP-1/cpn60 chaperonin family D3093_24415 PF06426 Serine acetyltransferase, N-terminal D3093_24415 PF00132 Bacterial transferase hexapeptide (six repeats) D3093_24420 PF00266 Aminotransferase class-V D3093_24430 PF01381 Helix-turn-helix D3093_24430 PF07883 Cupin domain D3093_24435 PF00676 Dehydrogenase E1 component D3093_24440 PF02779 Transketolase, pyrimidine binding domain D3093_24440 PF02780 Transketolase, C-terminal domain D3093_24445 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_24455 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_24460 PF02668 Taurine catabolism dioxygenase TauD, TfdA family D3093_24470 PF00528 Binding-protein-dependent transport system inner membrane component D3093_24475 PF00005 ABC transporter D3093_24480 PF02668 Taurine catabolism dioxygenase TauD, TfdA family D3093_24485 PF01970 Tripartite tricarboxylate transporter TctA family D3093_24500 PF03737 Aldolase/RraA D3093_24505 PF03401 Tripartite tricarboxylate transporter family receptor D3093_24515 PF03737 Aldolase/RraA D3093_24520 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D3093_24520 PF13378 Enolase C-terminal domain-like D3093_24525 PF00528 Binding-protein-dependent transport system inner membrane component D3093_24530 PF00528 Binding-protein-dependent transport system inner membrane component D3093_24530 PF12911 N-terminal TM domain of oligopeptide transport permease C D3093_24535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_24535 PF00005 ABC transporter D3093_24540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_24540 PF00005 ABC transporter D3093_24545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_24550 PF02558 Ketopantoate reductase PanE/ApbA D3093_24550 PF08546 Ketopantoate reductase PanE/ApbA C terminal D3093_24555 PF03737 Aldolase/RraA D3093_24560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_24565 PF01425 Amidase D3093_24570 PF00528 Binding-protein-dependent transport system inner membrane component D3093_24575 PF12911 N-terminal TM domain of oligopeptide transport permease C D3093_24575 PF00528 Binding-protein-dependent transport system inner membrane component D3093_24580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_24580 PF00005 ABC transporter D3093_24585 PF00005 ABC transporter D3093_24585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_24590 PF00892 EamA-like transporter family D3093_24595 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D3093_24595 PF01276 Orn/Lys/Arg decarboxylase, major domain D3093_24605 PF00857 Isochorismatase family D3093_24615 PF07883 Cupin domain D3093_24615 PF01381 Helix-turn-helix D3093_24620 PF00501 AMP-binding enzyme D3093_24620 PF13193 AMP-binding enzyme C-terminal domain D3093_24625 PF08240 Alcohol dehydrogenase GroES-like domain D3093_24625 PF00107 Zinc-binding dehydrogenase D3093_24630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3093_24630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3093_24640 PF00171 Aldehyde dehydrogenase family D3093_24645 PF00378 Enoyl-CoA hydratase/isomerase D3093_24650 PF00392 Bacterial regulatory proteins, gntR family D3093_24650 PF07729 FCD domain D3093_24660 PF00756 Putative esterase D3093_24660 PF11806 Domain of unknown function (DUF3327) D3093_24665 PF00501 AMP-binding enzyme D3093_24665 PF00975 Thioesterase domain D3093_24665 PF00550 Phosphopantetheine attachment site D3093_24665 PF00668 Condensation domain D3093_24665 PF13193 AMP-binding enzyme C-terminal domain D3093_24680 PF00857 Isochorismatase family D3093_24680 PF00550 Phosphopantetheine attachment site D3093_24685 PF00501 AMP-binding enzyme D3093_24685 PF13193 AMP-binding enzyme C-terminal domain D3093_24690 PF00425 chorismate binding enzyme D3093_24695 PF00873 AcrB/AcrD/AcrF family D3093_24705 PF05977 Transmembrane secretion effector D3093_24710 PF07715 TonB-dependent Receptor Plug Domain D3093_24710 PF00593 TonB dependent receptor D3093_24735 PF10503 Esterase PHB depolymerase D3093_24745 PF03929 PepSY-associated TM region D3093_24750 PF07715 TonB-dependent Receptor Plug Domain D3093_24750 PF00593 TonB dependent receptor D3093_24765 PF01595 Cyclin M transmembrane N-terminal domain D3093_24765 PF03471 Transporter associated domain D3093_24765 PF00571 CBS domain D3093_24780 PF00486 Transcriptional regulatory protein, C terminal D3093_24780 PF00072 Response regulator receiver domain D3093_24785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_24785 PF00512 His Kinase A (phospho-acceptor) domain D3093_24795 PF09335 SNARE associated Golgi protein D3093_24800 PF00561 alpha/beta hydrolase fold D3093_24810 PF01205 Uncharacterized protein family UPF0029 D3093_24815 PF07729 FCD domain D3093_24815 PF00392 Bacterial regulatory proteins, gntR family D3093_24820 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_24825 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D3093_24830 PF13378 Enolase C-terminal domain-like D3093_24830 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D3093_24835 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_24840 PF07883 Cupin domain D3093_24840 PF01381 Helix-turn-helix D3093_24845 PF01546 Peptidase family M20/M25/M40 D3093_24845 PF07687 Peptidase dimerisation domain D3093_24865 PF00528 Binding-protein-dependent transport system inner membrane component D3093_24880 PF01548 Transposase D3093_24880 PF02371 Transposase IS116/IS110/IS902 family D3093_24890 PF01548 Transposase D3093_24890 PF02371 Transposase IS116/IS110/IS902 family D3093_24895 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_24895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3093_24945 PF08714 Formaldehyde-activating enzyme (Fae) D3093_24955 PF08443 RimK-like ATP-grasp domain D3093_24955 PF18030 RimK PreATP-grasp domain D3093_24960 PF02289 Cyclohydrolase (MCH) D3093_24965 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D3093_24965 PF02142 MGS-like domain D3093_24965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3093_24970 PF09176 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal D3093_24980 PF01329 Pterin 4 alpha carbinolamine dehydratase D3093_24990 PF07969 Amidohydrolase family D3093_24995 PF02741 FTR, proximal lobe D3093_24995 PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase D3093_25015 PF00005 ABC transporter D3093_25035 PF04476 4-HFC-P synthase D3093_25075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3093_25080 PF13360 PQQ-like domain D3093_25100 PF03167 Uracil DNA glycosylase superfamily D3093_25135 PF03466 LysR substrate binding domain D3093_25135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_25140 PF02515 CoA-transferase family III D3093_25170 PF00528 Binding-protein-dependent transport system inner membrane component D3093_25175 PF00005 ABC transporter D3093_25175 PF08402 TOBE domain D3093_25180 PF00378 Enoyl-CoA hydratase/isomerase D3093_25205 PF02566 OsmC-like protein D3093_25210 PF00550 Phosphopantetheine attachment site D3093_25215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_25215 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_25215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_25290 PF00924 Mechanosensitive ion channel D3093_25310 PF00512 His Kinase A (phospho-acceptor) domain D3093_25310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_25325 PF02589 LUD domain D3093_25330 PF02589 LUD domain D3093_25330 PF13183 4Fe-4S dicluster domain D3093_25330 PF11870 Domain of unknown function (DUF3390) D3093_25335 PF02754 Cysteine-rich domain D3093_25340 PF02913 FAD linked oxidases, C-terminal domain D3093_25340 PF01565 FAD binding domain D3093_25345 PF02652 L-lactate permease D3093_25350 PF00392 Bacterial regulatory proteins, gntR family D3093_25350 PF07729 FCD domain D3093_25360 PF13649 Methyltransferase domain D3093_25365 PF00004 ATPase family associated with various cellular activities (AAA) D3093_25365 PF07724 AAA domain (Cdc48 subfamily) D3093_25365 PF17871 AAA lid domain D3093_25365 PF02861 Clp amino terminal domain, pathogenicity island component D3093_25365 PF10431 C-terminal, D2-small domain, of ClpB protein D3093_25370 PF09339 IclR helix-turn-helix domain D3093_25370 PF01614 Bacterial transcriptional regulator D3093_25375 PF05035 2-keto-3-deoxy-galactonokinase D3093_25380 PF01081 KDPG and KHG aldolase D3093_25385 PF03401 Tripartite tricarboxylate transporter family receptor D3093_25420 PF00072 Response regulator receiver domain D3093_25425 PF00072 Response regulator receiver domain D3093_25430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_25430 PF00512 His Kinase A (phospho-acceptor) domain D3093_25430 PF00072 Response regulator receiver domain D3093_25430 PF01627 Hpt domain D3093_25430 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_25430 PF00672 HAMP domain D3093_25435 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_25440 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_25445 PF08447 PAS fold D3093_25445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_25445 PF13426 PAS domain D3093_25465 PF00672 HAMP domain D3093_25465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_25480 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D3093_25480 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D3093_25485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_25485 PF00512 His Kinase A (phospho-acceptor) domain D3093_25485 PF00989 PAS fold D3093_25490 PF00072 Response regulator receiver domain D3093_25490 PF00196 Bacterial regulatory proteins, luxR family D3093_25495 PF03544 Gram-negative bacterial TonB protein C-terminal D3093_25500 PF02472 Biopolymer transport protein ExbD/TolR D3093_25505 PF01618 MotA/TolQ/ExbB proton channel family D3093_25530 PF00413 Matrixin D3093_25530 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D3093_25530 PF08548 Peptidase M10 serralysin C terminal D3093_25535 PF03330 Lytic transglycolase D3093_25535 PF05036 Sporulation related domain D3093_25545 PF06580 Histidine kinase D3093_25545 PF07694 5TMR of 5TMR-LYT D3093_25550 PF00072 Response regulator receiver domain D3093_25550 PF04397 LytTr DNA-binding domain D3093_25555 PF13722 5TM C-terminal transporter carbon starvation CstA D3093_25555 PF02554 Carbon starvation protein CstA D3093_25565 PF05343 M42 glutamyl aminopeptidase D3093_25570 PF18419 ATP-grasp-like domain D3093_25570 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D3093_25570 PF04262 Glutamate-cysteine ligase D3093_25575 PF00733 Asparagine synthase D3093_25575 PF13537 Glutamine amidotransferase domain D3093_25580 PF00155 Aminotransferase class I and II D3093_25580 PF00392 Bacterial regulatory proteins, gntR family D3093_25600 PF03466 LysR substrate binding domain D3093_25600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_25605 PF00202 Aminotransferase class-III D3093_25610 PF00171 Aldehyde dehydrogenase family D3093_25615 PF07729 FCD domain D3093_25615 PF00392 Bacterial regulatory proteins, gntR family D3093_25620 PF00571 CBS domain D3093_25620 PF03448 MgtE intracellular N domain D3093_25620 PF01769 Divalent cation transporter D3093_25630 PF03741 Integral membrane protein TerC family D3093_25635 PF01970 Tripartite tricarboxylate transporter TctA family D3093_25685 PF00534 Glycosyl transferases group 1 D3093_25685 PF13439 Glycosyltransferase Family 4 D3093_25700 PF08241 Methyltransferase domain D3093_25720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3093_25720 PF00529 HlyD membrane-fusion protein of T1SS D3093_25725 PF00005 ABC transporter D3093_25725 PF00664 ABC transporter transmembrane region D3093_25735 PF16363 GDP-mannose 4,6 dehydratase D3093_25740 PF12802 MarR family D3093_25750 PF00440 Bacterial regulatory proteins, tetR family D3093_25750 PF08361 MAATS-type transcriptional repressor, C-terminal region D3093_25755 PF00501 AMP-binding enzyme D3093_25755 PF13193 AMP-binding enzyme C-terminal domain D3093_25760 PF00392 Bacterial regulatory proteins, gntR family D3093_25760 PF07729 FCD domain D3093_25765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_25765 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_25765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_25770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3093_25770 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3093_25775 PF13193 AMP-binding enzyme C-terminal domain D3093_25775 PF00501 AMP-binding enzyme D3093_25780 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_25780 PF00005 ABC transporter D3093_25785 PF00501 AMP-binding enzyme D3093_25790 PF02653 Branched-chain amino acid transport system / permease component D3093_25805 PF00005 ABC transporter D3093_25810 PF13193 AMP-binding enzyme C-terminal domain D3093_25810 PF00501 AMP-binding enzyme D3093_25815 PF00171 Aldehyde dehydrogenase family D3093_25820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_25820 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_25820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_25825 PF00108 Thiolase, N-terminal domain D3093_25825 PF02803 Thiolase, C-terminal domain D3093_25830 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_25830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_25830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_25835 PF01039 Carboxyl transferase domain D3093_25840 PF00378 Enoyl-CoA hydratase/isomerase D3093_25845 PF00364 Biotin-requiring enzyme D3093_25845 PF02785 Biotin carboxylase C-terminal domain D3093_25845 PF00289 Biotin carboxylase, N-terminal domain D3093_25845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3093_25850 PF00682 HMGL-like D3093_25865 PF00106 short chain dehydrogenase D3093_25885 PF01596 O-methyltransferase D3093_25890 PF07859 alpha/beta hydrolase fold D3093_25900 PF01522 Polysaccharide deacetylase D3093_25905 PF05443 ROS/MUCR transcriptional regulator protein D3093_25910 PF00232 Glycosyl hydrolase family 1 D3093_25915 PF00232 Glycosyl hydrolase family 1 D3093_25920 PF04055 Radical SAM superfamily D3093_25920 PF06463 Molybdenum Cofactor Synthesis C D3093_25930 PF06472 ABC transporter transmembrane region 2 D3093_25930 PF00005 ABC transporter D3093_25940 PF01501 Glycosyl transferase family 8 D3093_25940 PF00535 Glycosyl transferase family 2 D3093_25955 PF00232 Glycosyl hydrolase family 1 D3093_25960 PF02056 Family 4 glycosyl hydrolase D3093_25960 PF11975 Family 4 glycosyl hydrolase C-terminal domain D3093_25985 PF07687 Peptidase dimerisation domain D3093_25985 PF01546 Peptidase family M20/M25/M40 D3093_25995 PF07568 Histidine kinase D3093_25995 PF12282 Signal transduction histidine kinase D3093_25995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_26000 PF00072 Response regulator receiver domain D3093_26000 PF00196 Bacterial regulatory proteins, luxR family D3093_26010 PF07194 P2 response regulator binding domain D3093_26010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_26010 PF02895 Signal transducing histidine kinase, homodimeric domain D3093_26010 PF01584 CheW-like domain D3093_26010 PF01627 Hpt domain D3093_26015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_26015 PF01584 CheW-like domain D3093_26015 PF01627 Hpt domain D3093_26015 PF00072 Response regulator receiver domain D3093_26020 PF03705 CheR methyltransferase, all-alpha domain D3093_26020 PF01739 CheR methyltransferase, SAM binding domain D3093_26025 PF03130 PBS lyase HEAT-like repeat D3093_26030 PF00072 Response regulator receiver domain D3093_26030 PF01339 CheB methylesterase D3093_26035 PF01584 CheW-like domain D3093_26040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_26040 PF00672 HAMP domain D3093_26050 PF00072 Response regulator receiver domain D3093_26055 PF01914 MarC family integral membrane protein D3093_26065 PF00285 Citrate synthase, C-terminal domain D3093_26085 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D3093_26085 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D3093_26100 PF00528 Binding-protein-dependent transport system inner membrane component D3093_26105 PF00528 Binding-protein-dependent transport system inner membrane component D3093_26110 PF17912 MalK OB fold domain D3093_26110 PF00005 ABC transporter D3093_26115 PF08402 TOBE domain D3093_26115 PF00005 ABC transporter D3093_26120 PF01266 FAD dependent oxidoreductase D3093_26120 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D3093_26125 PF09335 SNARE associated Golgi protein D3093_26135 PF00668 Condensation domain D3093_26135 PF13193 AMP-binding enzyme C-terminal domain D3093_26135 PF00501 AMP-binding enzyme D3093_26135 PF07993 Male sterility protein D3093_26135 PF00550 Phosphopantetheine attachment site D3093_26145 PF00664 ABC transporter transmembrane region D3093_26145 PF00005 ABC transporter D3093_26150 PF00005 ABC transporter D3093_26150 PF00664 ABC transporter transmembrane region D3093_26155 PF00975 Thioesterase domain D3093_26175 PF02203 Tar ligand binding domain homologue D3093_26175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_26175 PF00672 HAMP domain D3093_26180 PF17202 Single cache domain 3 D3093_26180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_26180 PF00672 HAMP domain D3093_26195 PF00034 Cytochrome c D3093_26210 PF00196 Bacterial regulatory proteins, luxR family D3093_26210 PF00072 Response regulator receiver domain D3093_26215 PF09308 LuxQ, periplasmic D3093_26215 PF00512 His Kinase A (phospho-acceptor) domain D3093_26215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_26215 PF00072 Response regulator receiver domain D3093_26220 PF13426 PAS domain D3093_26220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_26220 PF00072 Response regulator receiver domain D3093_26235 PF14542 GCN5-related N-acetyl-transferase D3093_26240 PF00128 Alpha amylase, catalytic domain D3093_26270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_26270 PF17202 Single cache domain 3 D3093_26270 PF00672 HAMP domain D3093_26275 PF02659 Putative manganese efflux pump D3093_26305 PF01596 O-methyltransferase D3093_26310 PF00501 AMP-binding enzyme D3093_26310 PF01553 Acyltransferase D3093_26315 PF17932 Tetracyclin repressor-like, C-terminal domain D3093_26315 PF00440 Bacterial regulatory proteins, tetR family D3093_26320 PF01546 Peptidase family M20/M25/M40 D3093_26320 PF07687 Peptidase dimerisation domain D3093_26325 PF01266 FAD dependent oxidoreductase D3093_26340 PF02653 Branched-chain amino acid transport system / permease component D3093_26345 PF11862 Domain of unknown function (DUF3382) D3093_26345 PF02653 Branched-chain amino acid transport system / permease component D3093_26350 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_26350 PF00005 ABC transporter D3093_26355 PF00005 ABC transporter D3093_26365 PF08447 PAS fold D3093_26365 PF08447 PAS fold D3093_26365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_26365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_26375 PF03358 NADPH-dependent FMN reductase D3093_26385 PF00455 DeoR C terminal sensor domain D3093_26385 PF08220 DeoR-like helix-turn-helix domain D3093_26390 PF00005 ABC transporter D3093_26390 PF17912 MalK OB fold domain D3093_26395 PF00528 Binding-protein-dependent transport system inner membrane component D3093_26400 PF00528 Binding-protein-dependent transport system inner membrane component D3093_26405 PF01547 Bacterial extracellular solute-binding protein D3093_26410 PF08241 Methyltransferase domain D3093_26415 PF13614 AAA domain D3093_26420 PF02195 ParB-like nuclease domain D3093_26420 PF17762 HTH domain found in ParB protein D3093_26440 PF00106 short chain dehydrogenase D3093_26450 PF01757 Acyltransferase family D3093_26460 PF01380 SIS domain D3093_26475 PF01170 Putative RNA methylase family UPF0020 D3093_26475 PF02926 THUMP domain D3093_26475 PF10672 S-adenosylmethionine-dependent methyltransferase D3093_26480 PF01568 Molydopterin dinucleotide binding domain D3093_26480 PF00384 Molybdopterin oxidoreductase D3093_26480 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3093_26495 PF00392 Bacterial regulatory proteins, gntR family D3093_26495 PF07729 FCD domain D3093_26505 PF00528 Binding-protein-dependent transport system inner membrane component D3093_26510 PF00005 ABC transporter D3093_26515 PF01979 Amidohydrolase family D3093_26525 PF01979 Amidohydrolase family D3093_26525 PF00449 Urease alpha-subunit, N-terminal domain D3093_26530 PF01425 Amidase D3093_26555 PF08402 TOBE domain D3093_26555 PF00005 ABC transporter D3093_26560 PF13416 Bacterial extracellular solute-binding protein D3093_26565 PF00528 Binding-protein-dependent transport system inner membrane component D3093_26570 PF00528 Binding-protein-dependent transport system inner membrane component D3093_26575 PF00576 HIUase/Transthyretin family D3093_26585 PF01425 Amidase D3093_26590 PF00512 His Kinase A (phospho-acceptor) domain D3093_26590 PF00072 Response regulator receiver domain D3093_26590 PF09308 LuxQ, periplasmic D3093_26590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_26605 PF01209 ubiE/COQ5 methyltransferase family D3093_26620 PF12706 Beta-lactamase superfamily domain D3093_26620 PF17770 Ribonuclease J C-terminal domain D3093_26620 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D3093_26635 PF00723 Glycosyl hydrolases family 15 D3093_26645 PF00196 Bacterial regulatory proteins, luxR family D3093_26645 PF00072 Response regulator receiver domain D3093_26650 PF00072 Response regulator receiver domain D3093_26650 PF00196 Bacterial regulatory proteins, luxR family D3093_26655 PF00072 Response regulator receiver domain D3093_26655 PF00196 Bacterial regulatory proteins, luxR family D3093_26665 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D3093_26665 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D3093_26665 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D3093_26670 PF16363 GDP-mannose 4,6 dehydratase D3093_26675 PF16363 GDP-mannose 4,6 dehydratase D3093_26680 PF00534 Glycosyl transferases group 1 D3093_26680 PF13439 Glycosyltransferase Family 4 D3093_26685 PF03808 Glycosyl transferase WecB/TagA/CpsF family D3093_26695 PF02397 Bacterial sugar transferase D3093_26700 PF01370 NAD dependent epimerase/dehydratase family D3093_26705 PF13807 G-rich domain on putative tyrosine kinase D3093_26705 PF13614 AAA domain D3093_26705 PF02706 Chain length determinant protein D3093_26710 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3093_26710 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D3093_26720 PF16363 GDP-mannose 4,6 dehydratase D3093_26840 PF06074 Protein of unknown function (DUF935) D3093_26860 PF10124 Mu-like prophage major head subunit gpT D3093_26940 PF00113 Enolase, C-terminal TIM barrel domain D3093_26940 PF03952 Enolase, N-terminal domain D3093_26945 PF01515 Phosphate acetyl/butaryl transferase D3093_26950 PF00871 Acetokinase family D3093_26965 PF04962 KduI/IolB family D3093_26970 PF00392 Bacterial regulatory proteins, gntR family D3093_26970 PF07729 FCD domain D3093_26975 PF03812 2-keto-3-deoxygluconate permease D3093_26985 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D3093_26985 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D3093_26990 PF00924 Mechanosensitive ion channel D3093_27030 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D3093_27030 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D3093_27060 PF07879 PHB/PHA accumulation regulator DNA-binding domain D3093_27060 PF05233 PHB accumulation regulatory domain D3093_27065 PF12697 Alpha/beta hydrolase family D3093_27065 PF08241 Methyltransferase domain D3093_27070 PF02803 Thiolase, C-terminal domain D3093_27070 PF00108 Thiolase, N-terminal domain D3093_27085 PF07690 Major Facilitator Superfamily D3093_27090 PF03466 LysR substrate binding domain D3093_27090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_27100 PF03707 Bacterial signalling protein N terminal repeat D3093_27100 PF00990 Diguanylate cyclase, GGDEF domain D3093_27100 PF00563 EAL domain D3093_27100 PF13188 PAS domain D3093_27105 PF01926 50S ribosome-binding GTPase D3093_27105 PF06071 Protein of unknown function (DUF933) D3093_27125 PF01627 Hpt domain D3093_27125 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_27125 PF00072 Response regulator receiver domain D3093_27125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_27125 PF00989 PAS fold D3093_27125 PF00512 His Kinase A (phospho-acceptor) domain D3093_27130 PF01339 CheB methylesterase D3093_27130 PF00072 Response regulator receiver domain D3093_27135 PF01339 CheB methylesterase D3093_27135 PF00072 Response regulator receiver domain D3093_27140 PF01339 CheB methylesterase D3093_27140 PF03705 CheR methyltransferase, all-alpha domain D3093_27140 PF08448 PAS fold D3093_27140 PF01739 CheR methyltransferase, SAM binding domain D3093_27145 PF01612 3'-5' exonuclease D3093_27145 PF01367 5'-3' exonuclease, C-terminal SAM fold D3093_27145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D3093_27145 PF00476 DNA polymerase family A D3093_27165 PF08446 PAS fold D3093_27165 PF00512 His Kinase A (phospho-acceptor) domain D3093_27165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_27165 PF01590 GAF domain D3093_27165 PF00360 Phytochrome region D3093_27170 PF00072 Response regulator receiver domain D3093_27170 PF00486 Transcriptional regulatory protein, C terminal D3093_27175 PF00072 Response regulator receiver domain D3093_27175 PF00486 Transcriptional regulatory protein, C terminal D3093_27195 PF00005 ABC transporter D3093_27205 PF03707 Bacterial signalling protein N terminal repeat D3093_27205 PF00563 EAL domain D3093_27205 PF00990 Diguanylate cyclase, GGDEF domain D3093_27215 PF03180 NLPA lipoprotein D3093_27220 PF00528 Binding-protein-dependent transport system inner membrane component D3093_27225 PF00005 ABC transporter D3093_27225 PF09383 NIL domain D3093_27230 PF13193 AMP-binding enzyme C-terminal domain D3093_27230 PF00501 AMP-binding enzyme D3093_27235 PF03180 NLPA lipoprotein D3093_27245 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3093_27270 PF00708 Acylphosphatase D3093_27280 PF03099 Biotin/lipoate A/B protein ligase family D3093_27295 PF03448 MgtE intracellular N domain D3093_27295 PF00571 CBS domain D3093_27295 PF01769 Divalent cation transporter D3093_27300 PF05690 Thiazole biosynthesis protein ThiG D3093_27300 PF01266 FAD dependent oxidoreductase D3093_27310 PF05690 Thiazole biosynthesis protein ThiG D3093_27345 PF00072 Response regulator receiver domain D3093_27345 PF00486 Transcriptional regulatory protein, C terminal D3093_27350 PF01323 DSBA-like thioredoxin domain D3093_27360 PF13746 4Fe-4S dicluster domain D3093_27360 PF12801 4Fe-4S binding domain D3093_27360 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase D3093_27365 PF00155 Aminotransferase class I and II D3093_27365 PF00392 Bacterial regulatory proteins, gntR family D3093_27370 PF00311 Phosphoenolpyruvate carboxylase D3093_27380 PF01116 Fructose-bisphosphate aldolase class-II D3093_27395 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase D3093_27395 PF13746 4Fe-4S dicluster domain D3093_27395 PF12801 4Fe-4S binding domain D3093_27400 PF02371 Transposase IS116/IS110/IS902 family D3093_27400 PF01548 Transposase D3093_27410 PF00360 Phytochrome region D3093_27410 PF08446 PAS fold D3093_27410 PF00512 His Kinase A (phospho-acceptor) domain D3093_27410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_27410 PF01590 GAF domain D3093_27415 PF00072 Response regulator receiver domain D3093_27420 PF00072 Response regulator receiver domain D3093_27420 PF08448 PAS fold D3093_27420 PF13188 PAS domain D3093_27420 PF00512 His Kinase A (phospho-acceptor) domain D3093_27420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_27425 PF05524 PEP-utilising enzyme, N-terminal D3093_27425 PF00391 PEP-utilising enzyme, mobile domain D3093_27425 PF02896 PEP-utilising enzyme, TIM barrel domain D3093_27425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D3093_27425 PF00381 PTS HPr component phosphorylation site D3093_27430 PF00294 pfkB family carbohydrate kinase D3093_27435 PF02378 Phosphotransferase system, EIIC D3093_27435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D3093_27440 PF00512 His Kinase A (phospho-acceptor) domain D3093_27440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_27450 PF00593 TonB dependent receptor D3093_27450 PF07715 TonB-dependent Receptor Plug Domain D3093_27460 PF04542 Sigma-70 region 2 D3093_27460 PF08281 Sigma-70, region 4 D3093_27465 PF00912 Transglycosylase D3093_27470 PF06426 Serine acetyltransferase, N-terminal D3093_27470 PF00132 Bacterial transferase hexapeptide (six repeats) D3093_27485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_27485 PF03466 LysR substrate binding domain D3093_27495 PF00005 ABC transporter D3093_27495 PF08402 TOBE domain D3093_27500 PF00528 Binding-protein-dependent transport system inner membrane component D3093_27505 PF00528 Binding-protein-dependent transport system inner membrane component D3093_27510 PF00491 Arginase family D3093_27515 PF00795 Carbon-nitrogen hydrolase D3093_27520 PF00291 Pyridoxal-phosphate dependent enzyme D3093_27520 PF13291 ACT domain D3093_27525 PF00860 Permease family D3093_27530 PF00171 Aldehyde dehydrogenase family D3093_27535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_27540 PF00528 Binding-protein-dependent transport system inner membrane component D3093_27545 PF00528 Binding-protein-dependent transport system inner membrane component D3093_27545 PF12911 N-terminal TM domain of oligopeptide transport permease C D3093_27550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_27550 PF00005 ABC transporter D3093_27555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_27555 PF00005 ABC transporter D3093_27560 PF01546 Peptidase family M20/M25/M40 D3093_27560 PF07687 Peptidase dimerisation domain D3093_27610 PF00483 Nucleotidyl transferase D3093_27615 PF00226 DnaJ domain D3093_27615 PF01556 DnaJ C terminal domain D3093_27615 PF00684 DnaJ central domain D3093_27625 PF00849 RNA pseudouridylate synthase D3093_27640 PF00155 Aminotransferase class I and II D3093_27650 PF13649 Methyltransferase domain D3093_27655 PF00202 Aminotransferase class-III D3093_27660 PF04055 Radical SAM superfamily D3093_27660 PF06968 Biotin and Thiamin Synthesis associated domain D3093_27670 PF02896 PEP-utilising enzyme, TIM barrel domain D3093_27670 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D3093_27670 PF00391 PEP-utilising enzyme, mobile domain D3093_27685 PF03975 CheD chemotactic sensory transduction D3093_27690 PF00313 'Cold-shock' DNA-binding domain D3093_27695 PF13193 AMP-binding enzyme C-terminal domain D3093_27695 PF00501 AMP-binding enzyme D3093_27700 PF01370 NAD dependent epimerase/dehydratase family D3093_27705 PF01790 Prolipoprotein diacylglyceryl transferase D3093_27725 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D3093_27725 PF14572 Phosphoribosyl synthetase-associated domain D3093_27730 PF01386 Ribosomal L25p family D3093_27730 PF14693 Ribosomal protein TL5, C-terminal domain D3093_27735 PF01195 Peptidyl-tRNA hydrolase D3093_27740 PF02653 Branched-chain amino acid transport system / permease component D3093_27745 PF02653 Branched-chain amino acid transport system / permease component D3093_27750 PF00005 ABC transporter D3093_27755 PF13407 Periplasmic binding protein domain D3093_27760 PF00171 Aldehyde dehydrogenase family D3093_27765 PF00701 Dihydrodipicolinate synthetase family D3093_27775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_27775 PF03466 LysR substrate binding domain D3093_27780 PF13407 Periplasmic binding protein domain D3093_27785 PF00005 ABC transporter D3093_27790 PF02653 Branched-chain amino acid transport system / permease component D3093_27795 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3093_27800 PF00920 Dehydratase family D3093_27810 PF01263 Aldose 1-epimerase D3093_27815 PF08125 Mannitol dehydrogenase C-terminal domain D3093_27815 PF01232 Mannitol dehydrogenase Rossmann domain D3093_27825 PF00528 Binding-protein-dependent transport system inner membrane component D3093_27835 PF04230 Polysaccharide pyruvyl transferase D3093_27840 PF07731 Multicopper oxidase D3093_27840 PF07732 Multicopper oxidase D3093_27840 PF00394 Multicopper oxidase D3093_27850 PF08362 YcdC-like protein, C-terminal region D3093_27850 PF00440 Bacterial regulatory proteins, tetR family D3093_27855 PF13533 Biotin-lipoyl like D3093_27860 PF00873 AcrB/AcrD/AcrF family D3093_27865 PF05368 NmrA-like family D3093_27870 PF01638 HxlR-like helix-turn-helix D3093_27875 PF06628 Catalase-related immune-responsive D3093_27875 PF00199 Catalase D3093_27880 PF03466 LysR substrate binding domain D3093_27880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_27885 PF00588 SpoU rRNA Methylase family D3093_27895 PF07995 Glucose / Sorbosone dehydrogenase D3093_27930 PF03786 D-mannonate dehydratase (UxuA) D3093_27935 PF08125 Mannitol dehydrogenase C-terminal domain D3093_27935 PF01232 Mannitol dehydrogenase Rossmann domain D3093_27945 PF00392 Bacterial regulatory proteins, gntR family D3093_27945 PF07729 FCD domain D3093_27955 PF07883 Cupin domain D3093_27960 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_27970 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_27975 PF00248 Aldo/keto reductase family D3093_27980 PF07729 FCD domain D3093_27980 PF00392 Bacterial regulatory proteins, gntR family D3093_27985 PF02142 MGS-like domain D3093_27990 PF02614 Glucuronate isomerase D3093_27995 PF08666 SAF domain D3093_27995 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus D3093_28000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_28000 PF03466 LysR substrate binding domain D3093_28025 PF01970 Tripartite tricarboxylate transporter TctA family D3093_28030 PF03741 Integral membrane protein TerC family D3093_28040 PF00072 Response regulator receiver domain D3093_28040 PF00486 Transcriptional regulatory protein, C terminal D3093_28045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_28045 PF00672 HAMP domain D3093_28045 PF00512 His Kinase A (phospho-acceptor) domain D3093_28070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_28075 PF00528 Binding-protein-dependent transport system inner membrane component D3093_28080 PF00528 Binding-protein-dependent transport system inner membrane component D3093_28080 PF12911 N-terminal TM domain of oligopeptide transport permease C D3093_28085 PF01758 Sodium Bile acid symporter family D3093_28090 PF03960 ArsC family D3093_28100 PF07702 UTRA domain D3093_28100 PF00392 Bacterial regulatory proteins, gntR family D3093_28105 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_28115 PF01425 Amidase D3093_28125 PF00392 Bacterial regulatory proteins, gntR family D3093_28125 PF07729 FCD domain D3093_28130 PF02515 CoA-transferase family III D3093_28135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_28135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_28135 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_28140 PF03972 MmgE/PrpD family D3093_28150 PF03328 HpcH/HpaI aldolase/citrate lyase family D3093_28160 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_28180 PF08281 Sigma-70, region 4 D3093_28180 PF04542 Sigma-70 region 2 D3093_28195 PF12796 Ankyrin repeats (3 copies) D3093_28195 PF00023 Ankyrin repeat D3093_28200 PF03466 LysR substrate binding domain D3093_28200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_28210 PF00753 Metallo-beta-lactamase superfamily D3093_28220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3093_28230 PF00732 GMC oxidoreductase D3093_28230 PF05199 GMC oxidoreductase D3093_28245 PF03275 UDP-galactopyranose mutase D3093_28255 PF00664 ABC transporter transmembrane region D3093_28255 PF00005 ABC transporter D3093_28260 PF13426 PAS domain D3093_28260 PF00072 Response regulator receiver domain D3093_28260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_28265 PF00860 Permease family D3093_28270 PF00990 Diguanylate cyclase, GGDEF domain D3093_28270 PF13185 GAF domain D3093_28280 PF02615 Malate/L-lactate dehydrogenase D3093_28285 PF01425 Amidase D3093_28320 PF03150 Di-haem cytochrome c peroxidase D3093_28345 PF00263 Bacterial type II and III secretion system protein D3093_28345 PF13629 Pilus formation protein N terminal region D3093_28345 PF04972 BON domain D3093_28360 PF00437 Type II/IV secretion system protein D3093_28475 PF00150 Cellulase (glycosyl hydrolase family 5) D3093_28490 PF00925 GTP cyclohydrolase II D3093_28520 PF02653 Branched-chain amino acid transport system / permease component D3093_28530 PF07969 Amidohydrolase family D3093_28535 PF00672 HAMP domain D3093_28535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_28545 PF00512 His Kinase A (phospho-acceptor) domain D3093_28545 PF00989 PAS fold D3093_28545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_28550 PF02515 CoA-transferase family III D3093_28560 PF09278 MerR, DNA binding D3093_28560 PF00376 MerR family regulatory protein D3093_28570 PF09339 IclR helix-turn-helix domain D3093_28570 PF01614 Bacterial transcriptional regulator D3093_28575 PF12838 4Fe-4S dicluster domain D3093_28575 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D3093_28575 PF01568 Molydopterin dinucleotide binding domain D3093_28575 PF00384 Molybdopterin oxidoreductase D3093_28575 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3093_28580 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D3093_28580 PF10531 SLBB domain D3093_28580 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D3093_28585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3093_28585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3093_28585 PF00205 Thiamine pyrophosphate enzyme, central domain D3093_28590 PF00392 Bacterial regulatory proteins, gntR family D3093_28590 PF07729 FCD domain D3093_28595 PF02142 MGS-like domain D3093_28595 PF00781 Diacylglycerol kinase catalytic domain D3093_28600 PF13419 Haloacid dehalogenase-like hydrolase D3093_28605 PF01594 AI-2E family transporter D3093_28610 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) D3093_28615 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D3093_28615 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D3093_28630 PF13847 Methyltransferase domain D3093_28630 PF03551 Transcriptional regulator PadR-like family D3093_28640 PF00072 Response regulator receiver domain D3093_28640 PF00486 Transcriptional regulatory protein, C terminal D3093_28645 PF02371 Transposase IS116/IS110/IS902 family D3093_28645 PF01548 Transposase D3093_28655 PF14842 FliG N-terminal domain D3093_28655 PF01706 FliG C-terminal domain D3093_28655 PF14841 FliG middle domain D3093_28665 PF00813 FliP family D3093_28670 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D3093_28680 PF01514 Secretory protein of YscJ/FliF family D3093_28680 PF08345 Flagellar M-ring protein C-terminal D3093_28690 PF02154 Flagellar motor switch protein FliM D3093_28690 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D3093_28715 PF03264 NapC/NirT cytochrome c family, N-terminal region D3093_28720 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) D3093_28725 PF01568 Molydopterin dinucleotide binding domain D3093_28725 PF00384 Molybdopterin oxidoreductase D3093_28725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3093_28745 PF02107 Flagellar L-ring protein D3093_28750 PF13144 Chaperone for flagella basal body P-ring formation D3093_28755 PF00460 Flagella basal body rod protein D3093_28755 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3093_28760 PF00460 Flagella basal body rod protein D3093_28760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3093_28770 PF01618 MotA/TolQ/ExbB proton channel family D3093_28775 PF00691 OmpA family D3093_28775 PF13677 Membrane MotB of proton-channel complex MotA/MotB D3093_28780 PF07690 Major Facilitator Superfamily D3093_28845 PF00072 Response regulator receiver domain D3093_28845 PF00158 Sigma-54 interaction domain D3093_28845 PF02954 Bacterial regulatory protein, Fis family D3093_28850 PF00465 Iron-containing alcohol dehydrogenase D3093_28850 PF00171 Aldehyde dehydrogenase family D3093_28865 PF00300 Histidine phosphatase superfamily (branch 1) D3093_28870 PF13419 Haloacid dehalogenase-like hydrolase D3093_28875 PF08402 TOBE domain D3093_28875 PF00005 ABC transporter D3093_28880 PF00528 Binding-protein-dependent transport system inner membrane component D3093_28890 PF02080 TrkA-C domain D3093_28890 PF06826 Predicted Permease Membrane Region D3093_28895 PF00155 Aminotransferase class I and II D3093_28900 PF00158 Sigma-54 interaction domain D3093_28900 PF00072 Response regulator receiver domain D3093_28900 PF02954 Bacterial regulatory protein, Fis family D3093_28905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_28905 PF00512 His Kinase A (phospho-acceptor) domain D3093_28915 PF00563 EAL domain D3093_28915 PF13188 PAS domain D3093_28915 PF03707 Bacterial signalling protein N terminal repeat D3093_28915 PF00990 Diguanylate cyclase, GGDEF domain D3093_28920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_28920 PF03466 LysR substrate binding domain D3093_28925 PF01799 [2Fe-2S] binding domain D3093_28925 PF00111 2Fe-2S iron-sulfur cluster binding domain D3093_28930 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3093_28940 PF01037 Lrp/AsnC ligand binding domain D3093_28950 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3093_28950 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3093_28950 PF00205 Thiamine pyrophosphate enzyme, central domain D3093_28960 PF00989 PAS fold D3093_28960 PF00512 His Kinase A (phospho-acceptor) domain D3093_28960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_28970 PF07043 Protein of unknown function (DUF1328) D3093_28975 PF03572 Peptidase family S41 D3093_28975 PF13180 PDZ domain D3093_28980 PF03466 LysR substrate binding domain D3093_28980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_28995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_28995 PF03466 LysR substrate binding domain D3093_29000 PF00205 Thiamine pyrophosphate enzyme, central domain D3093_29000 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3093_29000 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3093_29005 PF00171 Aldehyde dehydrogenase family D3093_29030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_29030 PF13426 PAS domain D3093_29030 PF00072 Response regulator receiver domain D3093_29035 PF06745 KaiC D3093_29045 PF00512 His Kinase A (phospho-acceptor) domain D3093_29045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_29045 PF00989 PAS fold D3093_29070 PF03601 Conserved hypothetical protein 698 D3093_29085 PF13419 Haloacid dehalogenase-like hydrolase D3093_29105 PF13614 AAA domain D3093_29110 PF17762 HTH domain found in ParB protein D3093_29110 PF02195 ParB-like nuclease domain D3093_29115 PF01548 Transposase D3093_29115 PF02371 Transposase IS116/IS110/IS902 family D3093_29120 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3093_29120 PF00205 Thiamine pyrophosphate enzyme, central domain D3093_29120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3093_29135 PF12800 4Fe-4S binding domain D3093_29135 PF13247 4Fe-4S dicluster domain D3093_29145 PF02629 CoA binding domain D3093_29145 PF00549 CoA-ligase D3093_29150 PF08442 ATP-grasp domain D3093_29150 PF00549 CoA-ligase D3093_29155 PF00171 Aldehyde dehydrogenase family D3093_29175 PF01515 Phosphate acetyl/butaryl transferase D3093_29180 PF09339 IclR helix-turn-helix domain D3093_29180 PF01614 Bacterial transcriptional regulator D3093_29185 PF01614 Bacterial transcriptional regulator D3093_29185 PF09339 IclR helix-turn-helix domain D3093_29195 PF01037 Lrp/AsnC ligand binding domain D3093_29200 PF01042 Endoribonuclease L-PSP D3093_29205 PF00291 Pyridoxal-phosphate dependent enzyme D3093_29220 PF02653 Branched-chain amino acid transport system / permease component D3093_29225 PF02653 Branched-chain amino acid transport system / permease component D3093_29225 PF11862 Domain of unknown function (DUF3382) D3093_29230 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_29230 PF00005 ABC transporter D3093_29235 PF00005 ABC transporter D3093_29245 PF07687 Peptidase dimerisation domain D3093_29245 PF01546 Peptidase family M20/M25/M40 D3093_29250 PF01266 FAD dependent oxidoreductase D3093_29260 PF00144 Beta-lactamase D3093_29265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_29265 PF03466 LysR substrate binding domain D3093_29295 PF00072 Response regulator receiver domain D3093_29295 PF00196 Bacterial regulatory proteins, luxR family D3093_29300 PF13426 PAS domain D3093_29300 PF07568 Histidine kinase D3093_29300 PF13581 Histidine kinase-like ATPase domain D3093_29310 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D3093_29315 PF00294 pfkB family carbohydrate kinase D3093_29320 PF05524 PEP-utilising enzyme, N-terminal D3093_29320 PF02896 PEP-utilising enzyme, TIM barrel domain D3093_29320 PF00391 PEP-utilising enzyme, mobile domain D3093_29320 PF00381 PTS HPr component phosphorylation site D3093_29320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D3093_29325 PF00356 Bacterial regulatory proteins, lacI family D3093_29335 PF00857 Isochorismatase family D3093_29345 PF00561 alpha/beta hydrolase fold D3093_29350 PF17645 Arylmalonate decarboxylase D3093_29355 PF01494 FAD binding domain D3093_29360 PF00005 ABC transporter D3093_29365 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_29365 PF00005 ABC transporter D3093_29370 PF02653 Branched-chain amino acid transport system / permease component D3093_29370 PF11862 Domain of unknown function (DUF3382) D3093_29375 PF02653 Branched-chain amino acid transport system / permease component D3093_29380 PF13458 Periplasmic binding protein D3093_29400 PF01979 Amidohydrolase family D3093_29420 PF02653 Branched-chain amino acid transport system / permease component D3093_29430 PF00005 ABC transporter D3093_29430 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_29435 PF00005 ABC transporter D3093_29440 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D3093_29440 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3093_29445 PF00941 FAD binding domain in molybdopterin dehydrogenase D3093_29445 PF03450 CO dehydrogenase flavoprotein C-terminal domain D3093_29455 PF01425 Amidase D3093_29485 PF09370 Phosphoenolpyruvate hydrolase-like D3093_29485 PF02954 Bacterial regulatory protein, Fis family D3093_29485 PF00158 Sigma-54 interaction domain D3093_29495 PF09370 Phosphoenolpyruvate hydrolase-like D3093_29505 PF01012 Electron transfer flavoprotein domain D3093_29505 PF00766 Electron transfer flavoprotein FAD-binding domain D3093_29510 PF01012 Electron transfer flavoprotein domain D3093_29515 PF02913 FAD linked oxidases, C-terminal domain D3093_29515 PF01565 FAD binding domain D3093_29520 PF00171 Aldehyde dehydrogenase family D3093_29530 PF08546 Ketopantoate reductase PanE/ApbA C terminal D3093_29530 PF02558 Ketopantoate reductase PanE/ApbA D3093_29535 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_29545 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_29550 PF00676 Dehydrogenase E1 component D3093_29550 PF16078 2-oxoglutarate dehydrogenase N-terminus D3093_29550 PF16870 2-oxoglutarate dehydrogenase C-terminal D3093_29550 PF02779 Transketolase, pyrimidine binding domain D3093_29555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_29555 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_29555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_29560 PF03466 LysR substrate binding domain D3093_29560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_29570 PF02515 CoA-transferase family III D3093_29575 PF00510 Cytochrome c oxidase subunit III D3093_29585 PF07729 FCD domain D3093_29585 PF00392 Bacterial regulatory proteins, gntR family D3093_29590 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3093_29595 PF12697 Alpha/beta hydrolase family D3093_29625 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_29625 PF00005 ABC transporter D3093_29630 PF00005 ABC transporter D3093_29640 PF02222 ATP-grasp domain D3093_29660 PF00005 ABC transporter D3093_29665 PF01794 Ferric reductase like transmembrane component D3093_29670 PF00174 Oxidoreductase molybdopterin binding domain D3093_29680 PF01081 KDPG and KHG aldolase D3093_29685 PF07729 FCD domain D3093_29685 PF00392 Bacterial regulatory proteins, gntR family D3093_29690 PF00294 pfkB family carbohydrate kinase D3093_29705 PF00486 Transcriptional regulatory protein, C terminal D3093_29705 PF00072 Response regulator receiver domain D3093_29710 PF00700 Bacterial flagellin C-terminal helical region D3093_29710 PF00669 Bacterial flagellin N-terminal helical region D3093_29720 PF07378 Flagellar protein FlbT D3093_29740 PF07690 Major Facilitator Superfamily D3093_29745 PF03466 LysR substrate binding domain D3093_29745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_29755 PF02874 ATP synthase alpha/beta family, beta-barrel domain D3093_29755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3093_29755 PF18269 T3SS EscN ATPase C-terminal domain D3093_29760 PF00460 Flagella basal body rod protein D3093_29765 PF00460 Flagella basal body rod protein D3093_29765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3093_29770 PF02049 Flagellar hook-basal body complex protein FliE D3093_29775 PF01313 Bacterial export proteins, family 3 D3093_29785 PF00771 FHIPEP family D3093_29790 PF01311 Bacterial export proteins, family 1 D3093_29795 PF01312 FlhB HrpN YscU SpaS Family D3093_29825 PF02119 Flagellar P-ring protein D3093_29835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3093_29835 PF00460 Flagella basal body rod protein D3093_29840 PF00460 Flagella basal body rod protein D3093_29840 PF07559 Flagellar basal body protein FlaE D3093_29840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D3093_29845 PF00313 'Cold-shock' DNA-binding domain D3093_29865 PF02203 Tar ligand binding domain homologue D3093_29865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_29865 PF00672 HAMP domain D3093_29870 PF03741 Integral membrane protein TerC family D3093_29875 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_29885 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_29895 PF07729 FCD domain D3093_29895 PF00392 Bacterial regulatory proteins, gntR family D3093_29900 PF00892 EamA-like transporter family D3093_29905 PF01226 Formate/nitrite transporter D3093_29910 PF04055 Radical SAM superfamily D3093_29915 PF02887 Pyruvate kinase, alpha/beta domain D3093_29915 PF00224 Pyruvate kinase, barrel domain D3093_29920 PF01590 GAF domain D3093_29920 PF00360 Phytochrome region D3093_29920 PF00512 His Kinase A (phospho-acceptor) domain D3093_29920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_29920 PF08446 PAS fold D3093_29925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_29925 PF18719 ArlS sensor domain D3093_29925 PF00512 His Kinase A (phospho-acceptor) domain D3093_29930 PF00440 Bacterial regulatory proteins, tetR family D3093_29935 PF00440 Bacterial regulatory proteins, tetR family D3093_29940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3093_29940 PF00529 HlyD membrane-fusion protein of T1SS D3093_29945 PF00873 AcrB/AcrD/AcrF family D3093_29950 PF01380 SIS domain D3093_29950 PF01418 Helix-turn-helix domain, rpiR family D3093_29950 PF02685 Glucokinase D3093_29955 PF02901 Pyruvate formate lyase-like D3093_29955 PF01228 Glycine radical D3093_29985 PF13401 AAA domain D3093_29985 PF09077 Mu B transposition protein, C terminal D3093_30105 PF06074 Protein of unknown function (DUF935) D3093_30120 PF00034 Cytochrome c D3093_30125 PF02195 ParB-like nuclease domain D3093_30125 PF17762 HTH domain found in ParB protein D3093_30130 PF13614 AAA domain D3093_30140 PF03354 Phage Terminase D3093_30160 PF00144 Beta-lactamase D3093_30175 PF00593 TonB dependent receptor D3093_30175 PF07715 TonB-dependent Receptor Plug Domain D3093_30185 PF04542 Sigma-70 region 2 D3093_30185 PF04545 Sigma-70, region 4 D3093_30195 PF01979 Amidohydrolase family D3093_30195 PF00449 Urease alpha-subunit, N-terminal domain D3093_30200 PF00392 Bacterial regulatory proteins, gntR family D3093_30200 PF07729 FCD domain D3093_30215 PF00701 Dihydrodipicolinate synthetase family D3093_30220 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_30220 PF04324 BFD-like [2Fe-2S] binding domain D3093_30225 PF00005 ABC transporter D3093_30230 PF00392 Bacterial regulatory proteins, gntR family D3093_30230 PF07729 FCD domain D3093_30245 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D3093_30245 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3093_30255 PF13407 Periplasmic binding protein domain D3093_30260 PF02653 Branched-chain amino acid transport system / permease component D3093_30265 PF00005 ABC transporter D3093_30270 PF00480 ROK family D3093_30270 PF01325 Iron dependent repressor, N-terminal DNA binding domain D3093_30290 PF00691 OmpA family D3093_30290 PF13677 Membrane MotB of proton-channel complex MotA/MotB D3093_30350 PF00004 ATPase family associated with various cellular activities (AAA) D3093_30350 PF07724 AAA domain (Cdc48 subfamily) D3093_30350 PF17871 AAA lid domain D3093_30350 PF10431 C-terminal, D2-small domain, of ClpB protein D3093_30355 PF16671 Actin cross-linking domain D3093_30355 PF04717 Type VI secretion system, phage-baseplate injector D3093_30405 PF01297 Zinc-uptake complex component A periplasmic D3093_30410 PF00005 ABC transporter D3093_30425 PF12704 MacB-like periplasmic core domain D3093_30425 PF02687 FtsX-like permease family D3093_30425 PF00005 ABC transporter D3093_30430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3093_30435 PF07715 TonB-dependent Receptor Plug Domain D3093_30435 PF00593 TonB dependent receptor D3093_30445 PF04542 Sigma-70 region 2 D3093_30445 PF08281 Sigma-70, region 4 D3093_30470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_30480 PF01053 Cys/Met metabolism PLP-dependent enzyme D3093_30485 PF02910 Fumarate reductase flavoprotein C-term D3093_30485 PF00890 FAD binding domain D3093_30500 PF00005 ABC transporter D3093_30505 PF00528 Binding-protein-dependent transport system inner membrane component D3093_30510 PF07969 Amidohydrolase family D3093_30525 PF03180 NLPA lipoprotein D3093_30530 PF03328 HpcH/HpaI aldolase/citrate lyase family D3093_30535 PF13454 FAD-NAD(P)-binding D3093_30545 PF01244 Membrane dipeptidase (Peptidase family M19) D3093_30555 PF08669 Glycine cleavage T-protein C-terminal barrel domain D3093_30555 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_30555 PF17806 Sarcosine oxidase A3 domain D3093_30555 PF01571 Aminomethyltransferase folate-binding domain D3093_30565 PF01266 FAD dependent oxidoreductase D3093_30570 PF02653 Branched-chain amino acid transport system / permease component D3093_30580 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_30580 PF00005 ABC transporter D3093_30585 PF00005 ABC transporter D3093_30600 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_30600 PF04324 BFD-like [2Fe-2S] binding domain D3093_30615 PF00593 TonB dependent receptor D3093_30615 PF07715 TonB-dependent Receptor Plug Domain D3093_30620 PF00005 ABC transporter D3093_30630 PF01032 FecCD transport family D3093_30635 PF00005 ABC transporter D3093_30635 PF00664 ABC transporter transmembrane region D3093_30655 PF00005 ABC transporter D3093_30665 PF09084 NMT1/THI5 like D3093_30670 PF01979 Amidohydrolase family D3093_30675 PF03069 Acetamidase/Formamidase family D3093_30685 PF01979 Amidohydrolase family D3093_30695 PF00529 HlyD membrane-fusion protein of T1SS D3093_30695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3093_30705 PF13533 Biotin-lipoyl like D3093_30710 PF00005 ABC transporter D3093_30720 PF07715 TonB-dependent Receptor Plug Domain D3093_30720 PF00593 TonB dependent receptor D3093_30725 PF06228 Haem utilisation ChuX/HutX D3093_30730 PF00582 Universal stress protein family D3093_30730 PF13493 Domain of unknown function (DUF4118) D3093_30730 PF00512 His Kinase A (phospho-acceptor) domain D3093_30730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_30730 PF02702 Osmosensitive K+ channel His kinase sensor domain D3093_30735 PF00486 Transcriptional regulatory protein, C terminal D3093_30735 PF00072 Response regulator receiver domain D3093_30740 PF00005 ABC transporter D3093_30745 PF01032 FecCD transport family D3093_30755 PF05171 Haemin-degrading HemS.ChuX domain D3093_30760 PF00795 Carbon-nitrogen hydrolase D3093_30765 PF01613 Flavin reductase like domain D3093_30775 PF00005 ABC transporter D3093_30780 PF00528 Binding-protein-dependent transport system inner membrane component D3093_30790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_30790 PF03466 LysR substrate binding domain D3093_30800 PF00042 Globin D3093_30800 PF00175 Oxidoreductase NAD-binding domain D3093_30800 PF00970 Oxidoreductase FAD-binding domain D3093_30805 PF02798 Glutathione S-transferase, N-terminal domain D3093_30810 PF07729 FCD domain D3093_30810 PF00392 Bacterial regulatory proteins, gntR family D3093_30820 PF00202 Aminotransferase class-III D3093_30835 PF07730 Histidine kinase D3093_30835 PF16448 LapD/MoxY periplasmic domain D3093_30835 PF00672 HAMP domain D3093_30840 PF00196 Bacterial regulatory proteins, luxR family D3093_30840 PF00072 Response regulator receiver domain D3093_30845 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3093_30850 PF14497 Glutathione S-transferase, C-terminal domain D3093_30850 PF02798 Glutathione S-transferase, N-terminal domain D3093_30855 PF07883 Cupin domain D3093_30860 PF01494 FAD binding domain D3093_30870 PF13458 Periplasmic binding protein D3093_30875 PF00005 ABC transporter D3093_30880 PF00005 ABC transporter D3093_30880 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_30885 PF02653 Branched-chain amino acid transport system / permease component D3093_30900 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3093_30900 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3093_30905 PF00890 FAD binding domain D3093_30915 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D3093_30915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3093_30935 PF00890 FAD binding domain D3093_30935 PF03358 NADPH-dependent FMN reductase D3093_30935 PF04205 FMN-binding domain D3093_30940 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3093_30945 PF00890 FAD binding domain D3093_30945 PF14537 Cytochrome c3 D3093_30955 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_30960 PF00528 Binding-protein-dependent transport system inner membrane component D3093_30965 PF00528 Binding-protein-dependent transport system inner membrane component D3093_30970 PF00005 ABC transporter D3093_30975 PF00171 Aldehyde dehydrogenase family D3093_30980 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D3093_30985 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D3093_30985 PF01488 Shikimate / quinate 5-dehydrogenase D3093_30985 PF08501 Shikimate dehydrogenase substrate binding domain D3093_30990 PF00701 Dihydrodipicolinate synthetase family D3093_30995 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus D3093_30995 PF08666 SAF domain D3093_31020 PF00486 Transcriptional regulatory protein, C terminal D3093_31020 PF00072 Response regulator receiver domain D3093_31040 PF00501 AMP-binding enzyme D3093_31040 PF13193 AMP-binding enzyme C-terminal domain D3093_31045 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_31045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_31045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_31050 PF02817 e3 binding domain D3093_31050 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D3093_31050 PF00364 Biotin-requiring enzyme D3093_31055 PF00378 Enoyl-CoA hydratase/isomerase D3093_31060 PF02780 Transketolase, C-terminal domain D3093_31060 PF00364 Biotin-requiring enzyme D3093_31060 PF02779 Transketolase, pyrimidine binding domain D3093_31065 PF00676 Dehydrogenase E1 component D3093_31075 PF13458 Periplasmic binding protein D3093_31085 PF02653 Branched-chain amino acid transport system / permease component D3093_31090 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_31090 PF00005 ABC transporter D3093_31095 PF00005 ABC transporter D3093_31100 PF00465 Iron-containing alcohol dehydrogenase D3093_31110 PF00108 Thiolase, N-terminal domain D3093_31110 PF02803 Thiolase, C-terminal domain D3093_31125 PF01575 MaoC like domain D3093_31135 PF13458 Periplasmic binding protein D3093_31140 PF02653 Branched-chain amino acid transport system / permease component D3093_31145 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_31145 PF00005 ABC transporter D3093_31150 PF00005 ABC transporter D3093_31235 PF13416 Bacterial extracellular solute-binding protein D3093_31240 PF08402 TOBE domain D3093_31240 PF00005 ABC transporter D3093_31245 PF00528 Binding-protein-dependent transport system inner membrane component D3093_31250 PF00528 Binding-protein-dependent transport system inner membrane component D3093_31255 PF05544 Proline racemase D3093_31260 PF00392 Bacterial regulatory proteins, gntR family D3093_31260 PF07729 FCD domain D3093_31270 PF00330 Aconitase family (aconitate hydratase) D3093_31275 PF00694 Aconitase C-terminal domain D3093_31285 PF00005 ABC transporter D3093_31290 PF00528 Binding-protein-dependent transport system inner membrane component D3093_31305 PF14032 PknH-like extracellular domain D3093_31305 PF00069 Protein kinase domain D3093_31330 PF05985 Ethanolamine ammonia-lyase light chain (EutC) D3093_31335 PF06751 Ethanolamine ammonia lyase large subunit (EutB) D3093_31340 PF00459 Inositol monophosphatase family D3093_31350 PF00005 ABC transporter D3093_31350 PF08402 TOBE domain D3093_31355 PF00528 Binding-protein-dependent transport system inner membrane component D3093_31360 PF00455 DeoR C terminal sensor domain D3093_31360 PF08220 DeoR-like helix-turn-helix domain D3093_31395 PF00005 ABC transporter D3093_31400 PF00528 Binding-protein-dependent transport system inner membrane component D3093_31410 PF00378 Enoyl-CoA hydratase/isomerase D3093_31415 PF02515 CoA-transferase family III D3093_31420 PF01425 Amidase D3093_31440 PF00376 MerR family regulatory protein D3093_31440 PF09278 MerR, DNA binding D3093_31445 PF00403 Heavy-metal-associated domain D3093_31450 PF01252 Signal peptidase (SPase) II D3093_31455 PF00392 Bacterial regulatory proteins, gntR family D3093_31455 PF00155 Aminotransferase class I and II D3093_31460 PF00892 EamA-like transporter family D3093_31465 PF00072 Response regulator receiver domain D3093_31465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_31465 PF08448 PAS fold D3093_31465 PF00512 His Kinase A (phospho-acceptor) domain D3093_31465 PF13426 PAS domain D3093_31475 PF07702 UTRA domain D3093_31475 PF00392 Bacterial regulatory proteins, gntR family D3093_31485 PF02397 Bacterial sugar transferase D3093_31500 PF03808 Glycosyl transferase WecB/TagA/CpsF family D3093_31550 PF00593 TonB dependent receptor D3093_31550 PF07715 TonB-dependent Receptor Plug Domain D3093_31555 PF00005 ABC transporter D3093_31555 PF08402 TOBE domain D3093_31575 PF08402 TOBE domain D3093_31575 PF00005 ABC transporter D3093_31595 PF13193 AMP-binding enzyme C-terminal domain D3093_31595 PF00501 AMP-binding enzyme D3093_31600 PF00378 Enoyl-CoA hydratase/isomerase D3093_31605 PF08240 Alcohol dehydrogenase GroES-like domain D3093_31605 PF00107 Zinc-binding dehydrogenase D3093_31615 PF09339 IclR helix-turn-helix domain D3093_31615 PF01614 Bacterial transcriptional regulator D3093_31620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3093_31625 PF00528 Binding-protein-dependent transport system inner membrane component D3093_31630 PF12911 N-terminal TM domain of oligopeptide transport permease C D3093_31630 PF00528 Binding-protein-dependent transport system inner membrane component D3093_31635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_31635 PF00005 ABC transporter D3093_31640 PF00005 ABC transporter D3093_31640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3093_31650 PF00072 Response regulator receiver domain D3093_31655 PF00356 Bacterial regulatory proteins, lacI family D3093_31660 PF02837 Glycosyl hydrolases family 2, sugar binding domain D3093_31660 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 D3093_31660 PF16355 Domain of unknown function (DUF4982) D3093_31660 PF02836 Glycosyl hydrolases family 2, TIM barrel domain D3093_31660 PF00703 Glycosyl hydrolases family 2 D3093_31665 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_31675 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_31680 PF17137 Domain of unknown function (DUF5110) D3093_31680 PF16338 Domain of unknown function (DUF4968) D3093_31680 PF13802 Galactose mutarotase-like D3093_31680 PF01055 Glycosyl hydrolases family 31 D3093_31690 PF03741 Integral membrane protein TerC family D3093_31695 PF01042 Endoribonuclease L-PSP D3093_31700 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_31705 PF01042 Endoribonuclease L-PSP D3093_31710 PF01266 FAD dependent oxidoreductase D3093_31715 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_31715 PF04324 BFD-like [2Fe-2S] binding domain D3093_31725 PF01266 FAD dependent oxidoreductase D3093_31730 PF00528 Binding-protein-dependent transport system inner membrane component D3093_31735 PF00528 Binding-protein-dependent transport system inner membrane component D3093_31740 PF00005 ABC transporter D3093_31740 PF08402 TOBE domain D3093_31750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_31750 PF03466 LysR substrate binding domain D3093_31760 PF00528 Binding-protein-dependent transport system inner membrane component D3093_31770 PF00701 Dihydrodipicolinate synthetase family D3093_31775 PF01070 FMN-dependent dehydrogenase D3093_31780 PF01565 FAD binding domain D3093_31780 PF02913 FAD linked oxidases, C-terminal domain D3093_31785 PF01381 Helix-turn-helix D3093_31785 PF07883 Cupin domain D3093_31795 PF00593 TonB dependent receptor D3093_31795 PF07715 TonB-dependent Receptor Plug Domain D3093_31820 PF05853 beta-keto acid cleavage enzyme D3093_31825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3093_31825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3093_31830 PF00158 Sigma-54 interaction domain D3093_31830 PF00072 Response regulator receiver domain D3093_31830 PF02954 Bacterial regulatory protein, Fis family D3093_31840 PF00873 AcrB/AcrD/AcrF family D3093_31845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3093_31850 PF00707 Translation initiation factor IF-3, C-terminal domain D3093_31850 PF05198 Translation initiation factor IF-3, N-terminal domain D3093_31855 PF01165 Ribosomal protein S21 D3093_31860 PF12282 Signal transduction histidine kinase D3093_31860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_31860 PF07568 Histidine kinase D3093_31865 PF00072 Response regulator receiver domain D3093_31875 PF00005 ABC transporter D3093_31880 PF00005 ABC transporter D3093_31880 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_31895 PF13458 Periplasmic binding protein D3093_31900 PF07690 Major Facilitator Superfamily D3093_31905 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3093_31910 PF02585 GlcNAc-PI de-N-acetylase D3093_31915 PF03737 Aldolase/RraA D3093_31920 PF04303 PrpF protein D3093_31925 PF04909 Amidohydrolase D3093_31935 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D3093_31940 PF14759 Reductase C-terminal D3093_31940 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3093_31945 PF00111 2Fe-2S iron-sulfur cluster binding domain D3093_31950 PF00067 Cytochrome P450 D3093_31965 PF03466 LysR substrate binding domain D3093_31965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_31975 PF08281 Sigma-70, region 4 D3093_31975 PF04542 Sigma-70 region 2 D3093_31980 PF07715 TonB-dependent Receptor Plug Domain D3093_31980 PF00593 TonB dependent receptor D3093_31990 PF00664 ABC transporter transmembrane region D3093_31990 PF00005 ABC transporter D3093_31995 PF07715 TonB-dependent Receptor Plug Domain D3093_31995 PF00593 TonB dependent receptor D3093_32005 PF01032 FecCD transport family D3093_32010 PF08021 Siderophore-interacting FAD-binding domain D3093_32010 PF04954 Siderophore-interacting protein D3093_32015 PF00005 ABC transporter D3093_32030 PF00108 Thiolase, N-terminal domain D3093_32030 PF02803 Thiolase, C-terminal domain D3093_32035 PF07690 Major Facilitator Superfamily D3093_32040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_32040 PF03466 LysR substrate binding domain D3093_32050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D3093_32055 PF00873 AcrB/AcrD/AcrF family D3093_32070 PF13545 Crp-like helix-turn-helix domain D3093_32095 PF00034 Cytochrome c D3093_32110 PF02416 mttA/Hcf106 family D3093_32120 PF05573 NosL D3093_32125 PF12679 ABC-2 family transporter protein D3093_32130 PF00005 ABC transporter D3093_32135 PF05048 Periplasmic copper-binding protein (NosD) D3093_32140 PF13473 Cupredoxin-like domain D3093_32140 PF18793 Nitrous oxide reductase propeller repeat 2 D3093_32140 PF18764 Nitrous oxide reductase propeller repeat D3093_32145 PF12801 4Fe-4S binding domain D3093_32145 PF04205 FMN-binding domain D3093_32160 PF02653 Branched-chain amino acid transport system / permease component D3093_32165 PF00005 ABC transporter D3093_32170 PF00005 ABC transporter D3093_32170 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_32180 PF00890 FAD binding domain D3093_32180 PF04205 FMN-binding domain D3093_32180 PF03358 NADPH-dependent FMN reductase D3093_32185 PF02515 CoA-transferase family III D3093_32195 PF00171 Aldehyde dehydrogenase family D3093_32200 PF09339 IclR helix-turn-helix domain D3093_32200 PF01614 Bacterial transcriptional regulator D3093_32210 PF03466 LysR substrate binding domain D3093_32210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_32220 PF07690 Major Facilitator Superfamily D3093_32225 PF01638 HxlR-like helix-turn-helix D3093_32230 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3093_32230 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D3093_32235 PF03450 CO dehydrogenase flavoprotein C-terminal domain D3093_32235 PF00941 FAD binding domain in molybdopterin dehydrogenase D3093_32240 PF00111 2Fe-2S iron-sulfur cluster binding domain D3093_32240 PF01799 [2Fe-2S] binding domain D3093_32255 PF03781 Sulfatase-modifying factor enzyme 1 D3093_32265 PF17863 AAA lid domain D3093_32265 PF07726 ATPase family associated with various cellular activities (AAA) D3093_32285 PF13519 von Willebrand factor type A domain D3093_32285 PF07584 Aerotolerance regulator N-terminal D3093_32300 PF00884 Sulfatase D3093_32305 PF02909 Tetracyclin repressor-like, C-terminal domain D3093_32305 PF00440 Bacterial regulatory proteins, tetR family D3093_32335 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_32335 PF08240 Alcohol dehydrogenase GroES-like domain D3093_32335 PF00550 Phosphopantetheine attachment site D3093_32335 PF16197 Ketoacyl-synthetase C-terminal extension D3093_32335 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_32335 PF08659 KR domain D3093_32335 PF14765 Polyketide synthase dehydratase D3093_32335 PF00698 Acyl transferase domain D3093_32360 PF00873 AcrB/AcrD/AcrF family D3093_32380 PF02668 Taurine catabolism dioxygenase TauD, TfdA family D3093_32395 PF05995 Cysteine dioxygenase type I D3093_32405 PF02311 AraC-like ligand binding domain D3093_32405 PF12833 Helix-turn-helix domain D3093_32420 PF13533 Biotin-lipoyl like D3093_32430 PF00528 Binding-protein-dependent transport system inner membrane component D3093_32435 PF00528 Binding-protein-dependent transport system inner membrane component D3093_32440 PF00005 ABC transporter D3093_32445 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3093_32450 PF01042 Endoribonuclease L-PSP D3093_32455 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family D3093_32460 PF00356 Bacterial regulatory proteins, lacI family D3093_32460 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D3093_32465 PF01648 4'-phosphopantetheinyl transferase superfamily D3093_32475 PF08659 KR domain D3093_32475 PF16197 Ketoacyl-synthetase C-terminal extension D3093_32475 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_32475 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_32475 PF00698 Acyl transferase domain D3093_32475 PF14765 Polyketide synthase dehydratase D3093_32475 PF00550 Phosphopantetheine attachment site D3093_32480 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal D3093_32480 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal D3093_32485 PF03109 ABC1 family D3093_32495 PF16197 Ketoacyl-synthetase C-terminal extension D3093_32495 PF00550 Phosphopantetheine attachment site D3093_32495 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_32495 PF00668 Condensation domain D3093_32495 PF13193 AMP-binding enzyme C-terminal domain D3093_32495 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_32495 PF00501 AMP-binding enzyme D3093_32495 PF14765 Polyketide synthase dehydratase D3093_32495 PF08659 KR domain D3093_32500 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_32500 PF08242 Methyltransferase domain D3093_32500 PF00550 Phosphopantetheine attachment site D3093_32500 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_32500 PF14765 Polyketide synthase dehydratase D3093_32500 PF16197 Ketoacyl-synthetase C-terminal extension D3093_32500 PF08659 KR domain D3093_32505 PF16197 Ketoacyl-synthetase C-terminal extension D3093_32505 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_32505 PF08659 KR domain D3093_32505 PF00550 Phosphopantetheine attachment site D3093_32505 PF14765 Polyketide synthase dehydratase D3093_32505 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_32525 PF00378 Enoyl-CoA hydratase/isomerase D3093_32530 PF00550 Phosphopantetheine attachment site D3093_32540 PF16197 Ketoacyl-synthetase C-terminal extension D3093_32540 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_32540 PF14765 Polyketide synthase dehydratase D3093_32540 PF08659 KR domain D3093_32540 PF00550 Phosphopantetheine attachment site D3093_32540 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_32545 PF16197 Ketoacyl-synthetase C-terminal extension D3093_32545 PF14765 Polyketide synthase dehydratase D3093_32545 PF00550 Phosphopantetheine attachment site D3093_32545 PF08659 KR domain D3093_32545 PF00501 AMP-binding enzyme D3093_32545 PF13193 AMP-binding enzyme C-terminal domain D3093_32545 PF00668 Condensation domain D3093_32545 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_32545 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_32550 PF14765 Polyketide synthase dehydratase D3093_32550 PF08242 Methyltransferase domain D3093_32550 PF16197 Ketoacyl-synthetase C-terminal extension D3093_32550 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_32550 PF00550 Phosphopantetheine attachment site D3093_32550 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_32550 PF08659 KR domain D3093_32555 PF00698 Acyl transferase domain D3093_32570 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D3093_32575 PF00005 ABC transporter D3093_32580 PF00528 Binding-protein-dependent transport system inner membrane component D3093_32585 PF12411 Choline sulfatase enzyme C terminal D3093_32585 PF00884 Sulfatase D3093_32590 PF02668 Taurine catabolism dioxygenase TauD, TfdA family D3093_32600 PF00528 Binding-protein-dependent transport system inner membrane component D3093_32605 PF00005 ABC transporter D3093_32620 PF00092 von Willebrand factor type A domain D3093_32625 PF07728 AAA domain (dynein-related subfamily) D3093_32625 PF08406 CbbQ/NirQ/NorQ C-terminal D3093_32630 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3093_32635 PF00034 Cytochrome c D3093_32640 PF17762 HTH domain found in ParB protein D3093_32640 PF02195 ParB-like nuclease domain D3093_32680 PF01554 MatE D3093_32685 PF00202 Aminotransferase class-III D3093_32685 PF00501 AMP-binding enzyme D3093_32685 PF13193 AMP-binding enzyme C-terminal domain D3093_32685 PF00668 Condensation domain D3093_32685 PF16197 Ketoacyl-synthetase C-terminal extension D3093_32685 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_32685 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_32685 PF00550 Phosphopantetheine attachment site D3093_32690 PF01212 Beta-eliminating lyase D3093_32700 PF00698 Acyl transferase domain D3093_32705 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) D3093_32715 PF00872 Transposase, Mutator family D3093_32745 PF13361 UvrD-like helicase C-terminal domain D3093_32745 PF00580 UvrD/REP helicase N-terminal domain D3093_32750 PF13614 AAA domain D3093_32755 PF17762 HTH domain found in ParB protein D3093_32755 PF02195 ParB-like nuclease domain D3093_32760 PF00239 Resolvase, N terminal domain D3093_32795 PF02146 Sir2 family D3093_32805 PF00589 Phage integrase family D3093_32805 PF13495 Phage integrase, N-terminal SAM-like domain D3093_32815 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3093_32815 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3093_32820 PF00766 Electron transfer flavoprotein FAD-binding domain D3093_32820 PF01012 Electron transfer flavoprotein domain D3093_32825 PF01012 Electron transfer flavoprotein domain D3093_32830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D3093_32830 PF00672 HAMP domain D3093_32835 PF11862 Domain of unknown function (DUF3382) D3093_32835 PF02653 Branched-chain amino acid transport system / permease component D3093_32840 PF02653 Branched-chain amino acid transport system / permease component D3093_32845 PF00005 ABC transporter D3093_32850 PF00005 ABC transporter D3093_32850 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3093_32855 PF00378 Enoyl-CoA hydratase/isomerase D3093_32860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3093_32860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3093_32860 PF02770 Acyl-CoA dehydrogenase, middle domain D3093_32875 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3093_32875 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3093_32880 PF00171 Aldehyde dehydrogenase family D3093_32885 PF02515 CoA-transferase family III D3093_32900 PF00239 Resolvase, N terminal domain D3093_32905 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3093_32910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3093_32910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3093_32910 PF01842 ACT domain D3093_32925 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D3093_32930 PF03480 Bacterial extracellular solute-binding protein, family 7 D3093_32945 PF12833 Helix-turn-helix domain D3093_32950 PF01161 Phosphatidylethanolamine-binding protein D3093_32955 PF13382 Adenine deaminase C-terminal domain D3093_32955 PF01979 Amidohydrolase family D3093_32985 PF00512 His Kinase A (phospho-acceptor) domain D3093_32985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_33015 PF02733 Dak1 domain D3093_33020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3093_33020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3093_33020 PF00205 Thiamine pyrophosphate enzyme, central domain D3093_33025 PF02515 CoA-transferase family III D3093_33030 PF01144 Coenzyme A transferase D3093_33040 PF00356 Bacterial regulatory proteins, lacI family D3093_33045 PF00005 ABC transporter D3093_33050 PF02653 Branched-chain amino acid transport system / permease component D3093_33055 PF13407 Periplasmic binding protein domain D3093_33060 PF01144 Coenzyme A transferase D3093_33075 PF01627 Hpt domain D3093_33075 PF00672 HAMP domain D3093_33075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3093_33075 PF00512 His Kinase A (phospho-acceptor) domain D3093_33075 PF00072 Response regulator receiver domain D3093_33075 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3093_33095 PF04954 Siderophore-interacting protein D3093_33095 PF00005 ABC transporter D3093_33095 PF00664 ABC transporter transmembrane region D3093_33095 PF08021 Siderophore-interacting FAD-binding domain D3093_33100 PF00005 ABC transporter D3093_33105 PF01032 FecCD transport family D3093_33110 PF01032 FecCD transport family D3093_33115 PF00005 ABC transporter D3093_33120 PF01497 Periplasmic binding protein D3093_33125 PF07715 TonB-dependent Receptor Plug Domain D3093_33125 PF00593 TonB dependent receptor D3093_33135 PF00082 Subtilase family D3093_33140 PF00082 Subtilase family D3093_33170 PF13419 Haloacid dehalogenase-like hydrolase D3093_33180 PF07504 Fungalysin/Thermolysin Propeptide Motif D3093_33180 PF03413 Peptidase propeptide and YPEB domain D3093_33180 PF02868 Thermolysin metallopeptidase, alpha-helical domain D3093_33180 PF01447 Thermolysin metallopeptidase, catalytic domain D3093_33240 PF01223 DNA/RNA non-specific endonuclease D3093_33265 PF13520 Amino acid permease D3093_33285 PF00775 Dioxygenase D3093_33285 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal D3093_33305 PF01867 CRISPR associated protein Cas1 D3093_33335 PF18019 HD domain D3093_33335 PF00271 Helicase conserved C-terminal domain D3093_33335 PF00270 DEAD/DEAH box helicase D3093_33340 PF18019 HD domain D3093_33340 PF18395 Cas3 C-terminal domain D3093_33360 PF07655 Secretin N-terminal domain D3093_33360 PF00263 Bacterial type II and III secretion system protein D3093_33475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3093_33475 PF03466 LysR substrate binding domain D3093_33490 PF01047 MarR family D3093_33540 PF17755 UvrA DNA-binding domain D3093_33550 PF00239 Resolvase, N terminal domain D3093_33550 PF13408 Recombinase zinc beta ribbon domain D3093_33550 PF07508 Recombinase D3093_33560 PF01734 Patatin-like phospholipase D3093_33635 PF07715 TonB-dependent Receptor Plug Domain D3093_33635 PF00593 TonB dependent receptor D3093_33645 PF02311 AraC-like ligand binding domain D3093_33645 PF12833 Helix-turn-helix domain D3093_33695 PF01381 Helix-turn-helix D3093_33700 PF01381 Helix-turn-helix D3093_33745 PF02661 Fic/DOC family D3093_33745 PF12728 Helix-turn-helix domain D3093_33780 PF01131 DNA topoisomerase D3093_33780 PF01751 Toprim domain D3093_33795 PF17862 AAA+ lid domain D3093_33795 PF06480 FtsH Extracellular D3093_33795 PF00004 ATPase family associated with various cellular activities (AAA) D3093_33795 PF01434 Peptidase family M41 D3093_33865 PF01527 Transposase D3093_33870 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB D3093_33880 PF00216 Bacterial DNA-binding protein D3093_33975 PF10137 Predicted nucleotide-binding protein containing TIR-like domain D3093_33985 PF07804 HipA-like C-terminal domain D3093_33985 PF13657 HipA N-terminal domain D3093_33995 PF00239 Resolvase, N terminal domain D3093_34000 PF00437 Type II/IV secretion system protein D3093_34035 PF03135 CagE, TrbE, VirB family, component of type IV transporter system D3093_34135 PF00155 Aminotransferase class I and II D3093_34140 PF12544 Lysine-2,3-aminomutase D3093_34140 PF04055 Radical SAM superfamily D3093_34145 PF02668 Taurine catabolism dioxygenase TauD, TfdA family D3093_34150 PF00668 Condensation domain D3093_34150 PF00550 Phosphopantetheine attachment site D3093_34150 PF00698 Acyl transferase domain D3093_34150 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_34150 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_34150 PF16197 Ketoacyl-synthetase C-terminal extension D3093_34155 PF13193 AMP-binding enzyme C-terminal domain D3093_34155 PF00668 Condensation domain D3093_34155 PF00550 Phosphopantetheine attachment site D3093_34155 PF00501 AMP-binding enzyme D3093_34165 PF04072 Leucine carboxyl methyltransferase D3093_34175 PF00550 Phosphopantetheine attachment site D3093_34175 PF00668 Condensation domain D3093_34175 PF00501 AMP-binding enzyme D3093_34175 PF13193 AMP-binding enzyme C-terminal domain D3093_34185 PF00668 Condensation domain D3093_34185 PF13193 AMP-binding enzyme C-terminal domain D3093_34185 PF00109 Beta-ketoacyl synthase, N-terminal domain D3093_34185 PF00550 Phosphopantetheine attachment site D3093_34185 PF00202 Aminotransferase class-III D3093_34185 PF00501 AMP-binding enzyme D3093_34185 PF02801 Beta-ketoacyl synthase, C-terminal domain D3093_34185 PF16197 Ketoacyl-synthetase C-terminal extension D3093_34195 PF01554 MatE D3093_34205 PF01695 IstB-like ATP binding protein D3093_34210 PF00665 Integrase core domain D3093_34240 PF02371 Transposase IS116/IS110/IS902 family D3093_34240 PF01548 Transposase D3093_34260 PF13439 Glycosyltransferase Family 4 D3093_34270 PF00534 Glycosyl transferases group 1 D3093_34270 PF13439 Glycosyltransferase Family 4 D3093_34285 PF01370 NAD dependent epimerase/dehydratase family D3093_34290 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D3093_34290 PF00413 Matrixin D3093_34290 PF08548 Peptidase M10 serralysin C terminal D3093_34310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D3093_34310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D3093_34310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D3093_34315 PF00005 ABC transporter D3093_34320 PF01061 ABC-2 type transporter D3093_34345 PF00534 Glycosyl transferases group 1 D3093_34345 PF13439 Glycosyltransferase Family 4 D3093_34370 PF01370 NAD dependent epimerase/dehydratase family D3093_34375 PF16363 GDP-mannose 4,6 dehydratase D3093_34380 PF00483 Nucleotidyl transferase D3093_34380 PF01050 Mannose-6-phosphate isomerase D3093_34390 PF00009 Elongation factor Tu GTP binding domain D3093_34395 PF01507 Phosphoadenosine phosphosulfate reductase family D3093_34405 PF01370 NAD dependent epimerase/dehydratase family D3093_34420 PF08241 Methyltransferase domain D3093_34430 PF10119 Predicted methyltransferase regulatory domain D3093_34430 PF13847 Methyltransferase domain D3093_34440 PF00535 Glycosyl transferase family 2 D3093_34445 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D3093_34450 PF16363 GDP-mannose 4,6 dehydratase D3093_34455 PF04321 RmlD substrate binding domain D3093_34460 PF00483 Nucleotidyl transferase D3093_34465 PF05711 Macrocin-O-methyltransferase (TylF) D3093_34470 PF00005 ABC transporter D3093_34475 PF00535 Glycosyl transferase family 2 D3093_34485 PF01061 ABC-2 type transporter D3093_34515 PF08645 Polynucleotide kinase 3 phosphatase D3093_34520 PF01209 ubiE/COQ5 methyltransferase family D3093_34525 PF00696 Amino acid kinase family D3093_34530 PF00696 Amino acid kinase family D3093_34550 PF00293 NUDIX domain D3093_34560 PF01970 Tripartite tricarboxylate transporter TctA family D3093_34565 PF03737 Aldolase/RraA D3093_34575 PF02719 Polysaccharide biosynthesis protein D3093_34580 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D3093_34590 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D3093_34590 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D3093_34590 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D3093_34595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3093_34595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3093_34595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3093_34595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3093_34600 PF17762 HTH domain found in ParB protein D3093_34600 PF02195 ParB-like nuclease domain D3093_34605 PF13614 AAA domain D3093_34615 PF01266 FAD dependent oxidoreductase D3093_34625 PF00005 ABC transporter D3093_34625 PF00664 ABC transporter transmembrane region D3093_34625 PF03412 Peptidase C39 family D3093_34640 PF00239 Resolvase, N terminal domain D3093_34670 PF02348 Cytidylyltransferase D3093_34690 PF16363 GDP-mannose 4,6 dehydratase D3093_34695 PF02348 Cytidylyltransferase D3093_34700 PF00535 Glycosyl transferase family 2 D3093_34705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D3093_34720 PF03102 NeuB family D3093_34720 PF08666 SAF domain D3093_34725 PF00733 Asparagine synthase D3093_34725 PF13537 Glutamine amidotransferase domain D3093_34730 PF13439 Glycosyltransferase Family 4 D3093_34730 PF00534 Glycosyl transferases group 1 D3093_34740 PF01695 IstB-like ATP binding protein D3093_34745 PF00665 Integrase core domain D3093_34795 PF05443 ROS/MUCR transcriptional regulator protein D3093_34800 PF00216 Bacterial DNA-binding protein D3093_34855 PF01548 Transposase D3093_34855 PF02371 Transposase IS116/IS110/IS902 family D3093_34875 PF01464 Transglycosylase SLT domain D3093_34915 PF00959 Phage lysozyme D3093_34925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3093_34960 PF01381 Helix-turn-helix D3093_34985 PF00107 Zinc-binding dehydrogenase D3093_34985 PF08240 Alcohol dehydrogenase GroES-like domain D3093_34990 PF01638 HxlR-like helix-turn-helix D3093_35075 PF00075 RNase H D3093_35100 PF01381 Helix-turn-helix D3093_35155 PF05958 tRNA (Uracil-5-)-methyltransferase D3093_35195 PF00027 Cyclic nucleotide-binding domain D3093_35195 PF13545 Crp-like helix-turn-helix domain D3093_35230 PF02075 Crossover junction endodeoxyribonuclease RuvC D3093_35285 PF03796 DnaB-like helicase C terminal domain D3093_35285 PF00772 DnaB-like helicase N terminal domain D3093_35300 PF01555 DNA methylase D3093_35325 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) D3093_35330 PF01867 CRISPR associated protein Cas1 D3093_35340 PF09704 CRISPR-associated protein (Cas_Cas5) D3093_35345 PF09344 CT1975-like protein D3093_35360 PF00271 Helicase conserved C-terminal domain D3093_35360 PF18019 HD domain D3093_35360 PF00270 DEAD/DEAH box helicase D3093_35405 PF07693 KAP family P-loop domain D3093_35545 PF01381 Helix-turn-helix D3093_35545 PF00145 C-5 cytosine-specific DNA methylase D3093_35550 PF00872 Transposase, Mutator family D3093_35560 PF13649 Methyltransferase domain D3093_35580 PF17288 Terminase RNAseH like domain D3093_35580 PF04466 Phage terminase large subunit D3093_35655 PF05443 ROS/MUCR transcriptional regulator protein D3093_35660 PF00216 Bacterial DNA-binding protein