locus-tag class description AMK58_00005 PF01909 Nucleotidyltransferase domain AMK58_00005 PF01966 HD domain AMK58_00005 PF08335 GlnD PII-uridylyltransferase AMK58_00040 PF01053 Cys/Met metabolism PLP-dependent enzyme AMK58_00045 PF01740 STAS domain AMK58_00055 PF05190 MutS family domain IV AMK58_00055 PF00488 MutS domain V AMK58_00055 PF01624 MutS domain I AMK58_00055 PF05188 MutS domain II AMK58_00055 PF05192 MutS domain III AMK58_00070 PF01966 HD domain AMK58_00070 PF08335 GlnD PII-uridylyltransferase AMK58_00070 PF01909 Nucleotidyltransferase domain AMK58_00090 PF13458 Periplasmic binding protein AMK58_00095 PF00512 His Kinase A (phospho-acceptor) domain AMK58_00095 PF09308 LuxQ, periplasmic AMK58_00095 PF00072 Response regulator receiver domain AMK58_00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_00100 PF03023 Lipid II flippase MurJ AMK58_00105 PF00579 tRNA synthetases class I (W and Y) AMK58_00110 PF01470 Pyroglutamyl peptidase AMK58_00120 PF02810 SEC-C motif AMK58_00135 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_00140 PF00440 Bacterial regulatory proteins, tetR family AMK58_00160 PF17284 Spermidine synthase tetramerisation domain AMK58_00165 PF02675 S-adenosylmethionine decarboxylase AMK58_00170 PF07722 Peptidase C26 AMK58_00175 PF12802 MarR family AMK58_00180 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMK58_00190 PF00300 Histidine phosphatase superfamily (branch 1) AMK58_00195 PF13439 Glycosyltransferase Family 4 AMK58_00195 PF00534 Glycosyl transferases group 1 AMK58_00200 PF00990 Diguanylate cyclase, GGDEF domain AMK58_00200 PF05230 MASE2 domain AMK58_00205 PF00534 Glycosyl transferases group 1 AMK58_00205 PF13439 Glycosyltransferase Family 4 AMK58_00215 PF00664 ABC transporter transmembrane region AMK58_00215 PF00005 ABC transporter AMK58_00220 PF00027 Cyclic nucleotide-binding domain AMK58_00220 PF13302 Acetyltransferase (GNAT) domain AMK58_00240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_00240 PF00005 ABC transporter AMK58_00245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_00250 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_00255 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_00255 PF12911 N-terminal TM domain of oligopeptide transport permease C AMK58_00265 PF12706 Beta-lactamase superfamily domain AMK58_00275 PF07995 Glucose / Sorbosone dehydrogenase AMK58_00285 PF00072 Response regulator receiver domain AMK58_00285 PF00486 Transcriptional regulatory protein, C terminal AMK58_00290 PF00925 GTP cyclohydrolase II AMK58_00305 PF01168 Alanine racemase, N-terminal domain AMK58_00330 PF13603 Leucyl-tRNA synthetase, Domain 2 AMK58_00330 PF08264 Anticodon-binding domain of tRNA AMK58_00330 PF00133 tRNA synthetases class I (I, L, M and V) AMK58_00350 PF17762 HTH domain found in ParB protein AMK58_00350 PF02195 ParB-like nuclease domain AMK58_00355 PF13614 AAA domain AMK58_00360 PF02527 rRNA small subunit methyltransferase G AMK58_00365 PF13932 GidA associated domain AMK58_00365 PF01134 Glucose inhibited division protein A AMK58_00370 PF10396 GTP-binding protein TrmE N-terminus AMK58_00370 PF01926 50S ribosome-binding GTPase AMK58_00370 PF12631 MnmE helical domain AMK58_00385 PF03190 Protein of unknown function, DUF255 AMK58_00390 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMK58_00390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMK58_00395 PF00107 Zinc-binding dehydrogenase AMK58_00395 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_00400 PF00929 Exonuclease AMK58_00405 PF01121 Dephospho-CoA kinase AMK58_00410 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMK58_00410 PF08501 Shikimate dehydrogenase substrate binding domain AMK58_00410 PF01488 Shikimate / quinate 5-dehydrogenase AMK58_00415 PF02545 Maf-like protein AMK58_00420 PF03618 Kinase/pyrophosphorylase AMK58_00425 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMK58_00445 PF00690 Cation transporter/ATPase, N-terminus AMK58_00445 PF00689 Cation transporting ATPase, C-terminus AMK58_00450 PF07497 Rho termination factor, RNA-binding domain AMK58_00450 PF07498 Rho termination factor, N-terminal domain AMK58_00450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMK58_00455 PF02556 Preprotein translocase subunit SecB AMK58_00465 PF04280 Tim44-like domain AMK58_00470 PF06725 3D domain AMK58_00470 PF03562 MltA specific insert domain AMK58_00480 PF01230 HIT domain AMK58_00485 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMK58_00490 PF00977 Histidine biosynthesis protein AMK58_00495 PF00977 Histidine biosynthesis protein AMK58_00500 PF00583 Acetyltransferase (GNAT) family AMK58_00505 PF00117 Glutamine amidotransferase class-I AMK58_00510 PF00475 Imidazoleglycerol-phosphate dehydratase AMK58_00520 PF00227 Proteasome subunit AMK58_00525 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_00525 PF07724 AAA domain (Cdc48 subfamily) AMK58_00525 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_00535 PF00512 His Kinase A (phospho-acceptor) domain AMK58_00535 PF13426 PAS domain AMK58_00535 PF13188 PAS domain AMK58_00535 PF00989 PAS fold AMK58_00535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_00550 PF02589 LUD domain AMK58_00555 PF11870 Domain of unknown function (DUF3390) AMK58_00555 PF02589 LUD domain AMK58_00555 PF13183 4Fe-4S dicluster domain AMK58_00560 PF02754 Cysteine-rich domain AMK58_00565 PF00672 HAMP domain AMK58_00565 PF16591 Helical bimodular sensor domain AMK58_00565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_00580 PF00950 ABC 3 transport family AMK58_00585 PF00005 ABC transporter AMK58_00590 PF01297 Zinc-uptake complex component A periplasmic AMK58_00595 PF05173 Dihydrodipicolinate reductase, C-terminus AMK58_00595 PF01113 Dihydrodipicolinate reductase, N-terminus AMK58_00600 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMK58_00600 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMK58_00610 PF00633 Helix-hairpin-helix motif AMK58_00610 PF00730 HhH-GPD superfamily base excision DNA repair protein AMK58_00610 PF10576 Iron-sulfur binding domain of endonuclease III AMK58_00625 PF00294 pfkB family carbohydrate kinase AMK58_00630 PF01925 Sulfite exporter TauE/SafE AMK58_00650 PF00672 HAMP domain AMK58_00650 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_00655 PF01106 NifU-like domain AMK58_00665 PF01427 D-ala-D-ala dipeptidase AMK58_00685 PF05443 ROS/MUCR transcriptional regulator protein AMK58_00700 PF00919 Uncharacterized protein family UPF0004 AMK58_00700 PF04055 Radical SAM superfamily AMK58_00700 PF01938 TRAM domain AMK58_00705 PF02562 PhoH-like protein AMK58_00710 PF02130 Uncharacterized protein family UPF0054 AMK58_00715 PF00571 CBS domain AMK58_00715 PF03471 Transporter associated domain AMK58_00720 PF00795 Carbon-nitrogen hydrolase AMK58_00725 PF01381 Helix-turn-helix AMK58_00730 PF02772 S-adenosylmethionine synthetase, central domain AMK58_00730 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMK58_00730 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMK58_00735 PF02390 Putative methyltransferase AMK58_00740 PF03992 Antibiotic biosynthesis monooxygenase AMK58_00745 PF17384 RimP C-terminal SH3 domain AMK58_00745 PF02576 RimP N-terminal domain AMK58_00750 PF08529 NusA N-terminal domain AMK58_00750 PF00575 S1 RNA binding domain AMK58_00750 PF13184 NusA-like KH domain AMK58_00760 PF08364 Bacterial translation initiation factor IF-2 associated region AMK58_00760 PF11987 Translation-initiation factor 2 AMK58_00760 PF04760 Translation initiation factor IF-2, N-terminal region AMK58_00760 PF00009 Elongation factor Tu GTP binding domain AMK58_00760 PF03144 Elongation factor Tu domain 2 AMK58_00765 PF02033 Ribosome-binding factor A AMK58_00770 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMK58_00770 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMK58_00775 PF00312 Ribosomal protein S15 AMK58_00780 PF00575 S1 RNA binding domain AMK58_00780 PF03725 3' exoribonuclease family, domain 2 AMK58_00780 PF01138 3' exoribonuclease family, domain 1 AMK58_00780 PF00013 KH domain AMK58_00780 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMK58_00790 PF04228 Putative neutral zinc metallopeptidase AMK58_00800 PF12544 Lysine-2,3-aminomutase AMK58_00800 PF04055 Radical SAM superfamily AMK58_00805 PF03009 Glycerophosphoryl diester phosphodiesterase family AMK58_00820 PF02915 Rubrerythrin AMK58_00835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_00835 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMK58_00845 PF13380 CoA binding domain AMK58_00845 PF13607 Succinyl-CoA ligase like flavodoxin domain AMK58_00845 PF00583 Acetyltransferase (GNAT) family AMK58_00850 PF00056 lactate/malate dehydrogenase, NAD binding domain AMK58_00850 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMK58_00855 PF00719 Inorganic pyrophosphatase AMK58_00860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_00870 PF03109 ABC1 family AMK58_00875 PF01209 ubiE/COQ5 methyltransferase family AMK58_00890 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMK58_00890 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMK58_00900 PF00378 Enoyl-CoA hydratase/isomerase AMK58_00905 PF01649 Ribosomal protein S20 AMK58_00910 PF00308 Bacterial dnaA protein AMK58_00910 PF11638 DnaA N-terminal domain AMK58_00910 PF08299 Bacterial dnaA protein helix-turn-helix AMK58_00915 PF13416 Bacterial extracellular solute-binding protein AMK58_00920 PF08402 TOBE domain AMK58_00920 PF00005 ABC transporter AMK58_00925 PF05425 Copper resistance protein D AMK58_00940 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_00945 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_00960 PF07732 Multicopper oxidase AMK58_00960 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMK58_00960 PF07731 Multicopper oxidase AMK58_00960 PF00394 Multicopper oxidase AMK58_00965 PF05958 tRNA (Uracil-5-)-methyltransferase AMK58_00970 PF10672 S-adenosylmethionine-dependent methyltransferase AMK58_00970 PF17785 PUA-like domain AMK58_00980 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_00995 PF00034 Cytochrome c AMK58_00995 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMK58_00995 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_01000 PF13746 4Fe-4S dicluster domain AMK58_01000 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMK58_01000 PF12801 4Fe-4S binding domain AMK58_01010 PF00403 Heavy-metal-associated domain AMK58_01015 PF13545 Crp-like helix-turn-helix domain AMK58_01015 PF00027 Cyclic nucleotide-binding domain AMK58_01020 PF00390 Malic enzyme, N-terminal domain AMK58_01020 PF01515 Phosphate acetyl/butaryl transferase AMK58_01020 PF03949 Malic enzyme, NAD binding domain AMK58_01025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01025 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01025 PF00989 PAS fold AMK58_01025 PF16736 Single Cache-like AMK58_01030 PF12849 PBP superfamily domain AMK58_01035 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_01040 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_01045 PF00005 ABC transporter AMK58_01050 PF01895 PhoU domain AMK58_01055 PF00486 Transcriptional regulatory protein, C terminal AMK58_01055 PF00072 Response regulator receiver domain AMK58_01070 PF00899 ThiF family AMK58_01080 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_01085 PF02082 Transcriptional regulator AMK58_01090 PF00692 dUTPase AMK58_01095 PF02441 Flavoprotein AMK58_01095 PF04127 DNA / pantothenate metabolism flavoprotein AMK58_01100 PF00158 Sigma-54 interaction domain AMK58_01100 PF00072 Response regulator receiver domain AMK58_01100 PF02954 Bacterial regulatory protein, Fis family AMK58_01105 PF00313 'Cold-shock' DNA-binding domain AMK58_01110 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01110 PF01627 Hpt domain AMK58_01110 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMK58_01110 PF00672 HAMP domain AMK58_01110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01110 PF00072 Response regulator receiver domain AMK58_01115 PF00950 ABC 3 transport family AMK58_01120 PF00950 ABC 3 transport family AMK58_01125 PF00005 ABC transporter AMK58_01130 PF01297 Zinc-uptake complex component A periplasmic AMK58_01155 PF01475 Ferric uptake regulator family AMK58_01165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01165 PF00989 PAS fold AMK58_01165 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01170 PF00183 Hsp90 protein AMK58_01185 PF01479 S4 domain AMK58_01190 PF03741 Integral membrane protein TerC family AMK58_01190 PF03471 Transporter associated domain AMK58_01205 PF06779 Uncharacterised MFS-type transporter YbfB AMK58_01210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_01210 PF03466 LysR substrate binding domain AMK58_01215 PF11953 Domain of unknown function (DUF3470) AMK58_01215 PF00037 4Fe-4S binding domain AMK58_01225 PF00561 alpha/beta hydrolase fold AMK58_01235 PF01435 Peptidase family M48 AMK58_01240 PF00672 HAMP domain AMK58_01240 PF02743 Cache domain AMK58_01240 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_01245 PF00140 Sigma-70 factor, region 1.2 AMK58_01245 PF04542 Sigma-70 region 2 AMK58_01245 PF04545 Sigma-70, region 4 AMK58_01255 PF01632 Ribosomal protein L35 AMK58_01260 PF00453 Ribosomal protein L20 AMK58_01265 PF01409 tRNA synthetases class II core domain (F) AMK58_01265 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMK58_01270 PF03484 tRNA synthetase B5 domain AMK58_01270 PF03147 Ferredoxin-fold anticodon binding domain AMK58_01270 PF01588 Putative tRNA binding domain AMK58_01270 PF03483 B3/4 domain AMK58_01270 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMK58_01280 PF11849 Domain of unknown function (DUF3369) AMK58_01290 PF03466 LysR substrate binding domain AMK58_01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_01300 PF06421 GTP-binding protein LepA C-terminus AMK58_01300 PF03144 Elongation factor Tu domain 2 AMK58_01300 PF00009 Elongation factor Tu GTP binding domain AMK58_01300 PF00679 Elongation factor G C-terminus AMK58_01310 PF08323 Starch synthase catalytic domain AMK58_01310 PF00534 Glycosyl transferases group 1 AMK58_01315 PF00483 Nucleotidyl transferase AMK58_01320 PF00909 Ammonium Transporter Family AMK58_01330 PF06445 GyrI-like small molecule binding domain AMK58_01345 PF12973 ChrR Cupin-like domain AMK58_01350 PF04545 Sigma-70, region 4 AMK58_01350 PF04542 Sigma-70 region 2 AMK58_01360 PF04055 Radical SAM superfamily AMK58_01375 PF00764 Arginosuccinate synthase AMK58_01380 PF12729 Four helix bundle sensory module for signal transduction AMK58_01380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_01380 PF00672 HAMP domain AMK58_01390 PF00581 Rhodanese-like domain AMK58_01395 PF06803 Protein of unknown function (DUF1232) AMK58_01400 PF00892 EamA-like transporter family AMK58_01410 PF03918 Cytochrome C biogenesis protein AMK58_01415 PF08534 Redoxin AMK58_01420 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMK58_01420 PF01578 Cytochrome C assembly protein AMK58_01425 PF03100 CcmE AMK58_01435 PF01578 Cytochrome C assembly protein AMK58_01440 PF03466 LysR substrate binding domain AMK58_01440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_01450 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMK58_01455 PF02146 Sir2 family AMK58_01460 PF03167 Uracil DNA glycosylase superfamily AMK58_01475 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMK58_01475 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMK58_01480 PF01544 CorA-like Mg2+ transporter protein AMK58_01485 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMK58_01485 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMK58_01490 PF02594 Uncharacterised ACR, YggU family COG1872 AMK58_01495 PF02325 YGGT family AMK58_01510 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_01515 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_01520 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_01525 PF00005 ABC transporter AMK58_01530 PF02080 TrkA-C domain AMK58_01530 PF06826 Predicted Permease Membrane Region AMK58_01535 PF02080 TrkA-C domain AMK58_01535 PF06826 Predicted Permease Membrane Region AMK58_01540 PF00005 ABC transporter AMK58_01545 PF03379 CcmB protein AMK58_01550 PF00085 Thioredoxin AMK58_01555 PF00580 UvrD/REP helicase N-terminal domain AMK58_01555 PF13361 UvrD-like helicase C-terminal domain AMK58_01555 PF12705 PD-(D/E)XK nuclease superfamily AMK58_01565 PF12705 PD-(D/E)XK nuclease superfamily AMK58_01570 PF12804 MobA-like NTP transferase domain AMK58_01580 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMK58_01590 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_01600 PF00072 Response regulator receiver domain AMK58_01600 PF00486 Transcriptional regulatory protein, C terminal AMK58_01605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01605 PF00672 HAMP domain AMK58_01605 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01610 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_01615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01615 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01620 PF01627 Hpt domain AMK58_01620 PF00672 HAMP domain AMK58_01620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01620 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01620 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMK58_01620 PF00072 Response regulator receiver domain AMK58_01625 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_01630 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_01635 PF00290 Tryptophan synthase alpha chain AMK58_01640 PF17848 Acetyl-coA carboxylase zinc finger domain AMK58_01640 PF01039 Carboxyl transferase domain AMK58_01645 PF02875 Mur ligase family, glutamate ligase domain AMK58_01645 PF08245 Mur ligase middle domain AMK58_01670 PF00989 PAS fold AMK58_01670 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01670 PF13426 PAS domain AMK58_01670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01670 PF13188 PAS domain AMK58_01675 PF01227 GTP cyclohydrolase I AMK58_01685 PF04073 Aminoacyl-tRNA editing domain AMK58_01695 PF01227 GTP cyclohydrolase I AMK58_01700 PF04379 ApaG domain AMK58_01730 PF00271 Helicase conserved C-terminal domain AMK58_01730 PF00270 DEAD/DEAH box helicase AMK58_01795 PF00012 Hsp70 protein AMK58_01800 PF13538 UvrD-like helicase C-terminal domain AMK58_01815 PF03793 PASTA domain AMK58_01815 PF00069 Protein kinase domain AMK58_01880 PF00270 DEAD/DEAH box helicase AMK58_01880 PF08148 DSHCT (NUC185) domain AMK58_01880 PF00271 Helicase conserved C-terminal domain AMK58_01885 PF00589 Phage integrase family AMK58_01900 PF00005 ABC transporter AMK58_01905 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_01920 PF01627 Hpt domain AMK58_01920 PF00072 Response regulator receiver domain AMK58_01920 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMK58_01920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01920 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01920 PF00672 HAMP domain AMK58_01930 PF13188 PAS domain AMK58_01930 PF00072 Response regulator receiver domain AMK58_01930 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01930 PF08448 PAS fold AMK58_01930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01940 PF07722 Peptidase C26 AMK58_01945 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_01945 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01955 PF13396 Phospholipase_D-nuclease N-terminal AMK58_01955 PF13091 PLD-like domain AMK58_01960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_01965 PF00691 OmpA family AMK58_01965 PF13488 Glycine zipper AMK58_01995 PF00595 PDZ domain AMK58_01995 PF13180 PDZ domain AMK58_02025 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMK58_02025 PF03900 Porphobilinogen deaminase, C-terminal domain AMK58_02035 PF00814 Glycoprotease family AMK58_02045 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMK58_02045 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMK58_02050 PF03795 YCII-related domain AMK58_02065 PF16177 Acetyl-coenzyme A synthetase N-terminus AMK58_02065 PF13193 AMP-binding enzyme C-terminal domain AMK58_02065 PF00501 AMP-binding enzyme AMK58_02080 PF07896 Protein of unknown function (DUF1674) AMK58_02085 PF01435 Peptidase family M48 AMK58_02100 PF01189 16S rRNA methyltransferase RsmB/F AMK58_02100 PF01029 NusB family AMK58_02110 PF01808 AICARFT/IMPCHase bienzyme AMK58_02110 PF02142 MGS-like domain AMK58_02140 PF05088 Bacterial NAD-glutamate dehydrogenase AMK58_02145 PF01966 HD domain AMK58_02145 PF00672 HAMP domain AMK58_02155 PF00672 HAMP domain AMK58_02155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_02170 PF03737 Aldolase/RraA AMK58_02185 PF00085 Thioredoxin AMK58_02190 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMK58_02190 PF05362 Lon protease (S16) C-terminal proteolytic domain AMK58_02190 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_02195 PF03966 Trm112p-like protein AMK58_02225 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMK58_02225 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMK58_02230 PF02308 MgtC family AMK58_02235 PF07690 Major Facilitator Superfamily AMK58_02245 PF09456 RcsC Alpha-Beta-Loop (ABL) AMK58_02245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_02245 PF00512 His Kinase A (phospho-acceptor) domain AMK58_02245 PF00072 Response regulator receiver domain AMK58_02255 PF13416 Bacterial extracellular solute-binding protein AMK58_02260 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_02265 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_02270 PF00005 ABC transporter AMK58_02270 PF08402 TOBE domain AMK58_02275 PF00043 Glutathione S-transferase, C-terminal domain AMK58_02275 PF02798 Glutathione S-transferase, N-terminal domain AMK58_02295 PF00270 DEAD/DEAH box helicase AMK58_02295 PF00271 Helicase conserved C-terminal domain AMK58_02300 PF01475 Ferric uptake regulator family AMK58_02315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_02315 PF00512 His Kinase A (phospho-acceptor) domain AMK58_02315 PF00672 HAMP domain AMK58_02315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMK58_02315 PF00072 Response regulator receiver domain AMK58_02315 PF01627 Hpt domain AMK58_02320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_02320 PF00512 His Kinase A (phospho-acceptor) domain AMK58_02325 PF01740 STAS domain AMK58_02335 PF00072 Response regulator receiver domain AMK58_02335 PF00486 Transcriptional regulatory protein, C terminal AMK58_02355 PF00990 Diguanylate cyclase, GGDEF domain AMK58_02355 PF00072 Response regulator receiver domain AMK58_02360 PF00072 Response regulator receiver domain AMK58_02360 PF00990 Diguanylate cyclase, GGDEF domain AMK58_02370 PF01740 STAS domain AMK58_02375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_02375 PF00672 HAMP domain AMK58_02380 PF01339 CheB methylesterase AMK58_02380 PF00072 Response regulator receiver domain AMK58_02385 PF03975 CheD chemotactic sensory transduction AMK58_02390 PF01739 CheR methyltransferase, SAM binding domain AMK58_02390 PF03705 CheR methyltransferase, all-alpha domain AMK58_02395 PF00672 HAMP domain AMK58_02395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_02395 PF02203 Tar ligand binding domain homologue AMK58_02400 PF01584 CheW-like domain AMK58_02405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_02405 PF01584 CheW-like domain AMK58_02405 PF01627 Hpt domain AMK58_02405 PF02895 Signal transducing histidine kinase, homodimeric domain AMK58_02410 PF00072 Response regulator receiver domain AMK58_02420 PF18698 Histidine kinase sensor domain AMK58_02420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_02420 PF00672 HAMP domain AMK58_02420 PF00512 His Kinase A (phospho-acceptor) domain AMK58_02420 PF00989 PAS fold AMK58_02430 PF00929 Exonuclease AMK58_02435 PF00072 Response regulator receiver domain AMK58_02435 PF00486 Transcriptional regulatory protein, C terminal AMK58_02450 PF04279 Intracellular septation protein A AMK58_02460 PF01048 Phosphorylase superfamily AMK58_02460 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AMK58_02465 PF02881 SRP54-type protein, helical bundle domain AMK58_02465 PF00448 SRP54-type protein, GTPase domain AMK58_02470 PF04055 Radical SAM superfamily AMK58_02470 PF00919 Uncharacterized protein family UPF0004 AMK58_02475 PF01678 Diaminopimelate epimerase AMK58_02500 PF00694 Aconitase C-terminal domain AMK58_02505 PF00180 Isocitrate/isopropylmalate dehydrogenase AMK58_02520 PF03328 HpcH/HpaI aldolase/citrate lyase family AMK58_02525 PF08543 Phosphomethylpyrimidine kinase AMK58_02530 PF03641 Possible lysine decarboxylase AMK58_02540 PF03969 AFG1-like ATPase AMK58_02545 PF00990 Diguanylate cyclase, GGDEF domain AMK58_02550 PF00512 His Kinase A (phospho-acceptor) domain AMK58_02550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_02555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMK58_02555 PF02817 e3 binding domain AMK58_02555 PF00364 Biotin-requiring enzyme AMK58_02560 PF02779 Transketolase, pyrimidine binding domain AMK58_02560 PF16078 2-oxoglutarate dehydrogenase N-terminus AMK58_02560 PF00676 Dehydrogenase E1 component AMK58_02560 PF16870 2-oxoglutarate dehydrogenase C-terminal AMK58_02565 PF02629 CoA binding domain AMK58_02565 PF00549 CoA-ligase AMK58_02570 PF00549 CoA-ligase AMK58_02570 PF08442 ATP-grasp domain AMK58_02575 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMK58_02575 PF00056 lactate/malate dehydrogenase, NAD binding domain AMK58_02590 PF01921 tRNA synthetases class I (K) AMK58_02595 PF00893 Small Multidrug Resistance protein AMK58_02605 PF00912 Transglycosylase AMK58_02610 PF13307 Helicase C-terminal domain AMK58_02610 PF04851 Type III restriction enzyme, res subunit AMK58_02610 PF00929 Exonuclease AMK58_02615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_02615 PF00672 HAMP domain AMK58_02625 PF04204 Homoserine O-succinyltransferase AMK58_02635 PF00672 HAMP domain AMK58_02635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_02650 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_02650 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMK58_02655 PF13673 Acetyltransferase (GNAT) domain AMK58_02660 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMK58_02660 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMK58_02670 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMK58_02680 PF02910 Fumarate reductase flavoprotein C-term AMK58_02680 PF00890 FAD binding domain AMK58_02685 PF13085 2Fe-2S iron-sulfur cluster binding domain AMK58_02685 PF13237 4Fe-4S dicluster domain AMK58_02695 PF01063 Amino-transferase class IV AMK58_02750 PF01223 DNA/RNA non-specific endonuclease AMK58_02775 PF13520 Amino acid permease AMK58_02795 PF00775 Dioxygenase AMK58_02795 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMK58_02805 PF03070 TENA/THI-4/PQQC family AMK58_02810 PF13811 Domain of unknown function (DUF4186) AMK58_02815 PF02796 Helix-turn-helix domain of resolvase AMK58_02815 PF00239 Resolvase, N terminal domain AMK58_02835 PF13358 DDE superfamily endonuclease AMK58_02845 PF01609 Transposase DDE domain AMK58_02850 PF00872 Transposase, Mutator family AMK58_02865 PF00580 UvrD/REP helicase N-terminal domain AMK58_02865 PF13361 UvrD-like helicase C-terminal domain AMK58_02865 PF12705 PD-(D/E)XK nuclease superfamily AMK58_02885 PF07690 Major Facilitator Superfamily AMK58_02945 PF00563 EAL domain AMK58_02945 PF00990 Diguanylate cyclase, GGDEF domain AMK58_02945 PF03707 Bacterial signalling protein N terminal repeat AMK58_02980 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMK58_02980 PF12708 Pectate lyase superfamily protein AMK58_02980 PF13229 Right handed beta helix region AMK58_03010 PF01180 Dihydroorotate dehydrogenase AMK58_03020 PF03129 Anticodon binding domain AMK58_03020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMK58_03020 PF02824 TGS domain AMK58_03020 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMK58_03025 PF00707 Translation initiation factor IF-3, C-terminal domain AMK58_03025 PF05198 Translation initiation factor IF-3, N-terminal domain AMK58_03030 PF00912 Transglycosylase AMK58_03030 PF00905 Penicillin binding protein transpeptidase domain AMK58_03055 PF00534 Glycosyl transferases group 1 AMK58_03055 PF13477 Glycosyl transferase 4-like AMK58_03075 PF03929 PepSY-associated TM region AMK58_03080 PF07715 TonB-dependent Receptor Plug Domain AMK58_03080 PF00593 TonB dependent receptor AMK58_03095 PF00884 Sulfatase AMK58_03110 PF07584 Aerotolerance regulator N-terminal AMK58_03110 PF13519 von Willebrand factor type A domain AMK58_03130 PF07726 ATPase family associated with various cellular activities (AAA) AMK58_03130 PF17863 AAA lid domain AMK58_03140 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_03155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_03155 PF03466 LysR substrate binding domain AMK58_03160 PF02515 CoA-transferase family III AMK58_03165 PF00378 Enoyl-CoA hydratase/isomerase AMK58_03175 PF01425 Amidase AMK58_03190 PF02653 Branched-chain amino acid transport system / permease component AMK58_03195 PF11862 Domain of unknown function (DUF3382) AMK58_03195 PF02653 Branched-chain amino acid transport system / permease component AMK58_03200 PF00005 ABC transporter AMK58_03200 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_03205 PF00005 ABC transporter AMK58_03220 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_03230 PF00005 ABC transporter AMK58_03260 PF00092 von Willebrand factor type A domain AMK58_03265 PF13180 PDZ domain AMK58_03285 PF01322 Cytochrome C' AMK58_03295 PF06965 Na+/H+ antiporter 1 AMK58_03310 PF03764 Elongation factor G, domain IV AMK58_03310 PF14492 Elongation Factor G, domain II AMK58_03310 PF00009 Elongation factor Tu GTP binding domain AMK58_03310 PF00679 Elongation factor G C-terminus AMK58_03315 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMK58_03315 PF02558 Ketopantoate reductase PanE/ApbA AMK58_03325 PF00210 Ferritin-like domain AMK58_03335 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_03350 PF06258 Mitochondrial fission ELM1 AMK58_03355 PF01037 Lrp/AsnC ligand binding domain AMK58_03365 PF03449 Transcription elongation factor, N-terminal AMK58_03365 PF01272 Transcription elongation factor, GreA/GreB, C-term AMK58_03370 PF02142 MGS-like domain AMK58_03370 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMK58_03370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMK58_03385 PF02308 MgtC family AMK58_03395 PF17854 FtsK alpha domain AMK58_03395 PF09397 Ftsk gamma domain AMK58_03395 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMK58_03395 PF01580 FtsK/SpoIIIE family AMK58_03415 PF01625 Peptide methionine sulfoxide reductase AMK58_03425 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMK58_03425 PF00588 SpoU rRNA Methylase family AMK58_03430 PF00106 short chain dehydrogenase AMK58_03435 PF09335 SNARE associated Golgi protein AMK58_03445 PF00034 Cytochrome c AMK58_03450 PF03459 TOBE domain AMK58_03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_03455 PF00171 Aldehyde dehydrogenase family AMK58_03470 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_03470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_03470 PF01627 Hpt domain AMK58_03470 PF00072 Response regulator receiver domain AMK58_03470 PF00512 His Kinase A (phospho-acceptor) domain AMK58_03470 PF00989 PAS fold AMK58_03480 PF00005 ABC transporter AMK58_03520 PF00196 Bacterial regulatory proteins, luxR family AMK58_03520 PF00072 Response regulator receiver domain AMK58_03530 PF00005 ABC transporter AMK58_03550 PF00034 Cytochrome c AMK58_03565 PF02600 Disulfide bond formation protein DsbB AMK58_03570 PF03232 Ubiquinone biosynthesis protein COQ7 AMK58_03580 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMK58_03585 PF00072 Response regulator receiver domain AMK58_03585 PF09308 LuxQ, periplasmic AMK58_03585 PF00512 His Kinase A (phospho-acceptor) domain AMK58_03585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_03595 PF08769 Sporulation initiation factor Spo0A C terminal AMK58_03595 PF00072 Response regulator receiver domain AMK58_03600 PF08298 PrkA AAA domain AMK58_03600 PF06798 PrkA serine protein kinase C-terminal domain AMK58_03605 PF04285 Protein of unknown function (DUF444) AMK58_03610 PF04293 SpoVR like protein AMK58_03615 PF00672 HAMP domain AMK58_03615 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_03625 PF08482 ATP-dependent helicase C-terminal AMK58_03625 PF04408 Helicase associated domain (HA2) AMK58_03625 PF00270 DEAD/DEAH box helicase AMK58_03625 PF00271 Helicase conserved C-terminal domain AMK58_03630 PF00005 ABC transporter AMK58_03650 PF00486 Transcriptional regulatory protein, C terminal AMK58_03650 PF00072 Response regulator receiver domain AMK58_03675 PF16200 C-terminal region of band_7 AMK58_03675 PF01145 SPFH domain / Band 7 family AMK58_03680 PF01594 AI-2E family transporter AMK58_03690 PF05145 Transition state regulatory protein AbrB AMK58_03695 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMK58_03705 PF01513 ATP-NAD kinase AMK58_03710 PF04055 Radical SAM superfamily AMK58_03710 PF06463 Molybdenum Cofactor Synthesis C AMK58_03725 PF00072 Response regulator receiver domain AMK58_03725 PF01627 Hpt domain AMK58_03725 PF00512 His Kinase A (phospho-acceptor) domain AMK58_03725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_03725 PF00672 HAMP domain AMK58_03725 PF17149 Periplasmic sensor domain found in signal transduction proteins AMK58_03735 PF00989 PAS fold AMK58_03735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_03735 PF00512 His Kinase A (phospho-acceptor) domain AMK58_03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_03745 PF00512 His Kinase A (phospho-acceptor) domain AMK58_03750 PF01515 Phosphate acetyl/butaryl transferase AMK58_03755 PF00871 Acetokinase family AMK58_03765 PF00571 CBS domain AMK58_03795 PF00196 Bacterial regulatory proteins, luxR family AMK58_03795 PF00072 Response regulator receiver domain AMK58_03800 PF00196 Bacterial regulatory proteins, luxR family AMK58_03800 PF00072 Response regulator receiver domain AMK58_03805 PF00580 UvrD/REP helicase N-terminal domain AMK58_03805 PF13361 UvrD-like helicase C-terminal domain AMK58_03830 PF00557 Metallopeptidase family M24 AMK58_03830 PF01321 Creatinase/Prolidase N-terminal domain AMK58_03830 PF00557 Metallopeptidase family M24 AMK58_03830 PF01321 Creatinase/Prolidase N-terminal domain AMK58_03835 PF00072 Response regulator receiver domain AMK58_03850 PF13525 Outer membrane lipoprotein AMK58_03855 PF02463 RecF/RecN/SMC N terminal domain AMK58_03875 PF00533 BRCA1 C Terminus (BRCT) domain AMK58_03875 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMK58_03875 PF12826 Helix-hairpin-helix motif AMK58_03875 PF03120 NAD-dependent DNA ligase OB-fold domain AMK58_03875 PF01653 NAD-dependent DNA ligase adenylation domain AMK58_03885 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMK58_03890 PF00091 Tubulin/FtsZ family, GTPase domain AMK58_03890 PF12327 FtsZ family, C-terminal domain AMK58_03895 PF02491 SHS2 domain inserted in FTSA AMK58_03900 PF03799 Cell division protein FtsQ AMK58_03900 PF08478 POTRA domain, FtsQ-type AMK58_03905 PF01820 D-ala D-ala ligase N-terminus AMK58_03905 PF07478 D-ala D-ala ligase C-terminus AMK58_03910 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMK58_03910 PF01565 FAD binding domain AMK58_03915 PF08245 Mur ligase middle domain AMK58_03915 PF01225 Mur ligase family, catalytic domain AMK58_03915 PF02875 Mur ligase family, glutamate ligase domain AMK58_03925 PF04101 Glycosyltransferase family 28 C-terminal domain AMK58_03925 PF03033 Glycosyltransferase family 28 N-terminal domain AMK58_03930 PF01098 Cell cycle protein AMK58_03935 PF08245 Mur ligase middle domain AMK58_03940 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMK58_03940 PF00953 Glycosyl transferase family 4 AMK58_03945 PF01225 Mur ligase family, catalytic domain AMK58_03945 PF02875 Mur ligase family, glutamate ligase domain AMK58_03945 PF08245 Mur ligase middle domain AMK58_03950 PF01225 Mur ligase family, catalytic domain AMK58_03950 PF08245 Mur ligase middle domain AMK58_03950 PF02875 Mur ligase family, glutamate ligase domain AMK58_03955 PF03717 Penicillin-binding Protein dimerisation domain AMK58_03955 PF00905 Penicillin binding protein transpeptidase domain AMK58_03965 PF01795 MraW methylase family AMK58_03970 PF02381 MraZ protein, putative antitoxin-like AMK58_03975 PF01510 N-acetylmuramoyl-L-alanine amidase AMK58_03990 PF05099 Tellurite resistance protein TerB AMK58_03990 PF00226 DnaJ domain AMK58_04000 PF05378 Hydantoinase/oxoprolinase N-terminal region AMK58_04000 PF01968 Hydantoinase/oxoprolinase AMK58_04005 PF02913 FAD linked oxidases, C-terminal domain AMK58_04005 PF01565 FAD binding domain AMK58_04010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMK58_04010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_04025 PF00072 Response regulator receiver domain AMK58_04025 PF13426 PAS domain AMK58_04025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_04050 PF00348 Polyprenyl synthetase AMK58_04060 PF05175 Methyltransferase small domain AMK58_04065 PF06965 Na+/H+ antiporter 1 AMK58_04065 PF01343 Peptidase family S49 AMK58_04080 PF02091 Glycyl-tRNA synthetase alpha subunit AMK58_04085 PF05746 DALR anticodon binding domain AMK58_04085 PF02092 Glycyl-tRNA synthetase beta subunit AMK58_04090 PF08502 LeuA allosteric (dimerisation) domain AMK58_04090 PF00682 HMGL-like AMK58_04095 PF04172 LrgB-like family AMK58_04100 PF03788 LrgA family AMK58_04105 PF12146 Serine aminopeptidase, S33 AMK58_04120 PF00107 Zinc-binding dehydrogenase AMK58_04120 PF13823 Alcohol dehydrogenase GroES-associated AMK58_04120 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_04130 PF00128 Alpha amylase, catalytic domain AMK58_04130 PF11941 Domain of unknown function (DUF3459) AMK58_04130 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMK58_04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_04140 PF00512 His Kinase A (phospho-acceptor) domain AMK58_04170 PF01471 Putative peptidoglycan binding domain AMK58_04170 PF01520 N-acetylmuramoyl-L-alanine amidase AMK58_04175 PF05951 Bacterial protein of unknown function (DUF882) AMK58_04190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04190 PF00672 HAMP domain AMK58_04215 PF01220 Dehydroquinase class II AMK58_04220 PF00364 Biotin-requiring enzyme AMK58_04225 PF02785 Biotin carboxylase C-terminal domain AMK58_04225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMK58_04225 PF00289 Biotin carboxylase, N-terminal domain AMK58_04230 PF00445 Ribonuclease T2 family AMK58_04235 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMK58_04250 PF02861 Clp amino terminal domain, pathogenicity island component AMK58_04250 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_04250 PF17871 AAA lid domain AMK58_04250 PF07724 AAA domain (Cdc48 subfamily) AMK58_04250 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_04255 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMK58_04280 PF00768 D-alanyl-D-alanine carboxypeptidase AMK58_04280 PF07943 Penicillin-binding protein 5, C-terminal domain AMK58_04285 PF12849 PBP superfamily domain AMK58_04290 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_04295 PF02634 FdhD/NarQ family AMK58_04300 PF12804 MobA-like NTP transferase domain AMK58_04325 PF01568 Molydopterin dinucleotide binding domain AMK58_04325 PF00384 Molybdopterin oxidoreductase AMK58_04325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_04330 PF13247 4Fe-4S dicluster domain AMK58_04355 PF00596 Class II Aldolase and Adducin N-terminal domain AMK58_04360 PF00512 His Kinase A (phospho-acceptor) domain AMK58_04360 PF00072 Response regulator receiver domain AMK58_04360 PF00672 HAMP domain AMK58_04360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_04360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMK58_04360 PF01627 Hpt domain AMK58_04365 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMK58_04370 PF00430 ATP synthase B/B' CF(0) AMK58_04375 PF00430 ATP synthase B/B' CF(0) AMK58_04380 PF00137 ATP synthase subunit C AMK58_04385 PF00119 ATP synthase A chain AMK58_04395 PF02630 SCO1/SenC AMK58_04405 PF00672 HAMP domain AMK58_04405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04405 PF17200 Single Cache domain 2 AMK58_04410 PF02562 PhoH-like protein AMK58_04415 PF05209 Septum formation inhibitor MinC, N-terminal domain AMK58_04415 PF03775 Septum formation inhibitor MinC, C-terminal domain AMK58_04420 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_04425 PF03776 Septum formation topological specificity factor MinE AMK58_04440 PF17200 Single Cache domain 2 AMK58_04440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04440 PF00672 HAMP domain AMK58_04445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04445 PF00672 HAMP domain AMK58_04445 PF12729 Four helix bundle sensory module for signal transduction AMK58_04450 PF13378 Enolase C-terminal domain-like AMK58_04450 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMK58_04460 PF00266 Aminotransferase class-V AMK58_04470 PF01329 Pterin 4 alpha carbinolamine dehydratase AMK58_04480 PF02685 Glucokinase AMK58_04485 PF00982 Glycosyltransferase family 20 AMK58_04500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04500 PF00672 HAMP domain AMK58_04505 PF02743 Cache domain AMK58_04505 PF00672 HAMP domain AMK58_04505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04510 PF01274 Malate synthase AMK58_04515 PF13538 UvrD-like helicase C-terminal domain AMK58_04515 PF14490 Helix-hairpin-helix containing domain AMK58_04515 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AMK58_04520 PF00313 'Cold-shock' DNA-binding domain AMK58_04530 PF00512 His Kinase A (phospho-acceptor) domain AMK58_04530 PF00672 HAMP domain AMK58_04530 PF01627 Hpt domain AMK58_04530 PF00072 Response regulator receiver domain AMK58_04530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_04530 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMK58_04535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04535 PF12729 Four helix bundle sensory module for signal transduction AMK58_04535 PF00672 HAMP domain AMK58_04550 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_04555 PF00766 Electron transfer flavoprotein FAD-binding domain AMK58_04555 PF01012 Electron transfer flavoprotein domain AMK58_04560 PF01012 Electron transfer flavoprotein domain AMK58_04565 PF03206 Nitrogen fixation protein NifW AMK58_04570 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_04575 PF00682 HMGL-like AMK58_04580 PF00266 Aminotransferase class-V AMK58_04585 PF01106 NifU-like domain AMK58_04585 PF01592 NifU-like N terminal domain AMK58_04585 PF04324 BFD-like [2Fe-2S] binding domain AMK58_04590 PF01521 Iron-sulphur cluster biosynthesis AMK58_04605 PF13237 4Fe-4S dicluster domain AMK58_04610 PF05082 Rop-like AMK58_04615 PF03270 Protein of unknown function, DUF269 AMK58_04620 PF02579 Dinitrogenase iron-molybdenum cofactor AMK58_04625 PF00148 Nitrogenase component 1 type Oxidoreductase AMK58_04630 PF00148 Nitrogenase component 1 type Oxidoreductase AMK58_04630 PF04324 BFD-like [2Fe-2S] binding domain AMK58_04635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04635 PF08447 PAS fold AMK58_04635 PF13426 PAS domain AMK58_04640 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_04650 PF00148 Nitrogenase component 1 type Oxidoreductase AMK58_04650 PF11844 Domain of unknown function (DUF3364) AMK58_04655 PF00148 Nitrogenase component 1 type Oxidoreductase AMK58_04660 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AMK58_04670 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) AMK58_04675 PF03747 ADP-ribosylglycohydrolase AMK58_04680 PF03960 ArsC family AMK58_04685 PF13230 Glutamine amidotransferases class-II AMK58_04690 PF02525 Flavodoxin-like fold AMK58_04700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMK58_04710 PF06988 NifT/FixU protein AMK58_04715 PF00266 Aminotransferase class-V AMK58_04725 PF04319 NifZ domain AMK58_04730 PF01816 Leucine rich repeat variant AMK58_04730 PF05484 LRV protein FeS4 cluster AMK58_04740 PF12838 4Fe-4S dicluster domain AMK58_04745 PF04055 Radical SAM superfamily AMK58_04745 PF02579 Dinitrogenase iron-molybdenum cofactor AMK58_04750 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_04760 PF00158 Sigma-54 interaction domain AMK58_04760 PF02954 Bacterial regulatory protein, Fis family AMK58_04760 PF13185 GAF domain AMK58_04765 PF00440 Bacterial regulatory proteins, tetR family AMK58_04765 PF08362 YcdC-like protein, C-terminal region AMK58_04775 PF00005 ABC transporter AMK58_04790 PF03411 Penicillin-insensitive murein endopeptidase AMK58_04800 PF00444 Ribosomal protein L36 AMK58_04805 PF01565 FAD binding domain AMK58_04805 PF02913 FAD linked oxidases, C-terminal domain AMK58_04810 PF01565 FAD binding domain AMK58_04815 PF13183 4Fe-4S dicluster domain AMK58_04815 PF02754 Cysteine-rich domain AMK58_04820 PF01066 CDP-alcohol phosphatidyltransferase AMK58_04835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_04835 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_04835 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMK58_04835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_04850 PF01565 FAD binding domain AMK58_04850 PF02913 FAD linked oxidases, C-terminal domain AMK58_04855 PF01300 Telomere recombination AMK58_04855 PF03481 Putative GTP-binding controlling metal-binding AMK58_04860 PF13614 AAA domain AMK58_04870 PF00578 AhpC/TSA family AMK58_04875 PF08335 GlnD PII-uridylyltransferase AMK58_04875 PF03710 Glutamate-ammonia ligase adenylyltransferase AMK58_04885 PF00579 tRNA synthetases class I (W and Y) AMK58_04890 PF03702 Anhydro-N-acetylmuramic acid kinase AMK58_04895 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMK58_04900 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_04905 PF02082 Transcriptional regulator AMK58_04910 PF00266 Aminotransferase class-V AMK58_04915 PF07743 HSCB C-terminal oligomerisation domain AMK58_04920 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_04940 PF00529 HlyD membrane-fusion protein of T1SS AMK58_04940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMK58_04945 PF00005 ABC transporter AMK58_04945 PF00664 ABC transporter transmembrane region AMK58_04965 PF00106 short chain dehydrogenase AMK58_04970 PF03466 LysR substrate binding domain AMK58_04970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_04975 PF13847 Methyltransferase domain AMK58_04985 PF00072 Response regulator receiver domain AMK58_04985 PF09308 LuxQ, periplasmic AMK58_04985 PF00512 His Kinase A (phospho-acceptor) domain AMK58_04985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_04995 PF00072 Response regulator receiver domain AMK58_05010 PF04891 NifQ AMK58_05020 PF01894 Uncharacterised protein family UPF0047 AMK58_05030 PF13406 Transglycosylase SLT domain AMK58_05050 PF00465 Iron-containing alcohol dehydrogenase AMK58_05070 PF13439 Glycosyltransferase Family 4 AMK58_05070 PF00534 Glycosyl transferases group 1 AMK58_05080 PF00583 Acetyltransferase (GNAT) family AMK58_05095 PF00206 Lyase AMK58_05095 PF10415 Fumarase C C-terminus AMK58_05110 PF00563 EAL domain AMK58_05110 PF08448 PAS fold AMK58_05110 PF00990 Diguanylate cyclase, GGDEF domain AMK58_05115 PF02222 ATP-grasp domain AMK58_05115 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMK58_05120 PF00731 AIR carboxylase AMK58_05130 PF00365 Phosphofructokinase AMK58_05140 PF13302 Acetyltransferase (GNAT) domain AMK58_05155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_05155 PF00460 Flagella basal body rod protein AMK58_05155 PF07559 Flagellar basal body protein FlaE AMK58_05160 PF00484 Carbonic anhydrase AMK58_05165 PF02441 Flavoprotein AMK58_05175 PF00550 Phosphopantetheine attachment site AMK58_05175 PF14765 Polyketide synthase dehydratase AMK58_05175 PF08659 KR domain AMK58_05175 PF00698 Acyl transferase domain AMK58_05175 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_05175 PF02801 Beta-ketoacyl synthase, C-terminal domain AMK58_05175 PF00109 Beta-ketoacyl synthase, N-terminal domain AMK58_05175 PF16197 Ketoacyl-synthetase C-terminal extension AMK58_05210 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMK58_05210 PF03807 NADP oxidoreductase coenzyme F420-dependent AMK58_05220 PF00501 AMP-binding enzyme AMK58_05220 PF13193 AMP-binding enzyme C-terminal domain AMK58_05225 PF17668 Acetyltransferase (GNAT) domain AMK58_05225 PF13530 Sterol carrier protein domain AMK58_05250 PF08331 Domain of unknown function (DUF1730) AMK58_05255 PF14489 QueF-like protein AMK58_05260 PF01702 Queuine tRNA-ribosyltransferase AMK58_05265 PF02547 Queuosine biosynthesis protein AMK58_05270 PF03109 ABC1 family AMK58_05275 PF00672 HAMP domain AMK58_05275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_05280 PF08031 Berberine and berberine like AMK58_05280 PF01565 FAD binding domain AMK58_05305 PF16177 Acetyl-coenzyme A synthetase N-terminus AMK58_05305 PF00501 AMP-binding enzyme AMK58_05305 PF13193 AMP-binding enzyme C-terminal domain AMK58_05315 PF04542 Sigma-70 region 2 AMK58_05315 PF08281 Sigma-70, region 4 AMK58_05345 PF01339 CheB methylesterase AMK58_05345 PF00072 Response regulator receiver domain AMK58_05365 PF00425 chorismate binding enzyme AMK58_05365 PF04715 Anthranilate synthase component I, N terminal region AMK58_05365 PF00117 Glutamine amidotransferase class-I AMK58_05370 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) AMK58_05375 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMK58_05375 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMK58_05380 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMK58_05385 PF02233 NAD(P) transhydrogenase beta subunit AMK58_05395 PF02548 Ketopantoate hydroxymethyltransferase AMK58_05400 PF01165 Ribosomal protein S21 AMK58_05405 PF01327 Polypeptide deformylase AMK58_05415 PF04993 TfoX N-terminal domain AMK58_05415 PF04994 TfoX C-terminal domain AMK58_05425 PF02511 Thymidylate synthase complementing protein AMK58_05450 PF02653 Branched-chain amino acid transport system / permease component AMK58_05455 PF00005 ABC transporter AMK58_05460 PF00999 Sodium/hydrogen exchanger family AMK58_05460 PF02254 TrkA-N domain AMK58_05465 PF10609 NUBPL iron-transfer P-loop NTPase AMK58_05465 PF01883 Iron-sulfur cluster assembly protein AMK58_05470 PF12221 Bacterial membrane protein N terminal AMK58_05470 PF01145 SPFH domain / Band 7 family AMK58_05475 PF01145 SPFH domain / Band 7 family AMK58_05485 PF13180 PDZ domain AMK58_05505 PF00155 Aminotransferase class I and II AMK58_05510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_05510 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_05510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_05515 PF10369 Small subunit of acetolactate synthase AMK58_05520 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMK58_05520 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMK58_05525 PF01895 PhoU domain AMK58_05530 PF03350 Uncharacterized protein family, UPF0114 AMK58_05540 PF04085 rod shape-determining protein MreC AMK58_05550 PF00905 Penicillin binding protein transpeptidase domain AMK58_05550 PF03717 Penicillin-binding Protein dimerisation domain AMK58_05555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_05555 PF00672 HAMP domain AMK58_05590 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMK58_05595 PF01048 Phosphorylase superfamily AMK58_05600 PF01791 DeoC/LacD family aldolase AMK58_05605 PF02885 Glycosyl transferase family, helical bundle domain AMK58_05605 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AMK58_05605 PF00591 Glycosyl transferase family, a/b domain AMK58_05615 PF00892 EamA-like transporter family AMK58_05635 PF00005 ABC transporter AMK58_05635 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_05640 PF00005 ABC transporter AMK58_05650 PF00654 Voltage gated chloride channel AMK58_05655 PF03976 Polyphosphate kinase 2 (PPK2) AMK58_05660 PF03976 Polyphosphate kinase 2 (PPK2) AMK58_05665 PF11896 Domain of unknown function (DUF3416) AMK58_05665 PF00128 Alpha amylase, catalytic domain AMK58_05675 PF00563 EAL domain AMK58_05675 PF01590 GAF domain AMK58_05675 PF00990 Diguanylate cyclase, GGDEF domain AMK58_05675 PF00989 PAS fold AMK58_05680 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_05680 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_05685 PF02586 SOS response associated peptidase (SRAP) AMK58_05695 PF00072 Response regulator receiver domain AMK58_05700 PF04226 Transglycosylase associated protein AMK58_05705 PF00834 Ribulose-phosphate 3 epimerase family AMK58_05710 PF03459 TOBE domain AMK58_05710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_05715 PF00107 Zinc-binding dehydrogenase AMK58_05715 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_05720 PF01638 HxlR-like helix-turn-helix AMK58_05730 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMK58_05730 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_05740 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_05750 PF13419 Haloacid dehalogenase-like hydrolase AMK58_05765 PF00994 Probable molybdopterin binding domain AMK58_05770 PF12801 4Fe-4S binding domain AMK58_05770 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMK58_05770 PF13746 4Fe-4S dicluster domain AMK58_05775 PF04304 Protein of unknown function (DUF454) AMK58_05780 PF09335 SNARE associated Golgi protein AMK58_05785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_05785 PF00512 His Kinase A (phospho-acceptor) domain AMK58_05785 PF00989 PAS fold AMK58_05790 PF02887 Pyruvate kinase, alpha/beta domain AMK58_05790 PF00224 Pyruvate kinase, barrel domain AMK58_05795 PF00416 Ribosomal protein S13/S18 AMK58_05800 PF00411 Ribosomal protein S11 AMK58_05805 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMK58_05805 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMK58_05805 PF01000 RNA polymerase Rpb3/RpoA insert domain AMK58_05810 PF01196 Ribosomal protein L17 AMK58_05815 PF09335 SNARE associated Golgi protein AMK58_05830 PF16193 AAA C-terminal domain AMK58_05830 PF12002 MgsA AAA+ ATPase C terminal AMK58_05830 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_05840 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMK58_05845 PF00849 RNA pseudouridylate synthase AMK58_05845 PF01479 S4 domain AMK58_05850 PF00392 Bacterial regulatory proteins, gntR family AMK58_05850 PF07729 FCD domain AMK58_05855 PF03594 Benzoate membrane transport protein AMK58_05860 PF13419 Haloacid dehalogenase-like hydrolase AMK58_05880 PF01571 Aminomethyltransferase folate-binding domain AMK58_05885 PF01272 Transcription elongation factor, GreA/GreB, C-term AMK58_05885 PF14760 Rnk N-terminus AMK58_05890 PF00005 ABC transporter AMK58_05905 PF02608 ABC transporter substrate-binding protein PnrA-like AMK58_05930 PF00990 Diguanylate cyclase, GGDEF domain AMK58_05930 PF00072 Response regulator receiver domain AMK58_05935 PF00156 Phosphoribosyl transferase domain AMK58_05940 PF00753 Metallo-beta-lactamase superfamily AMK58_05940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMK58_05940 PF10996 Beta-Casp domain AMK58_05950 PF03707 Bacterial signalling protein N terminal repeat AMK58_05950 PF00563 EAL domain AMK58_05950 PF00990 Diguanylate cyclase, GGDEF domain AMK58_05955 PF00106 short chain dehydrogenase AMK58_05960 PF12867 DinB superfamily AMK58_05960 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_05965 PF10017 Histidine-specific methyltransferase, SAM-dependent AMK58_05975 PF00809 Pterin binding enzyme AMK58_05980 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMK58_05980 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMK58_05980 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMK58_05980 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMK58_05985 PF08543 Phosphomethylpyrimidine kinase AMK58_05990 PF00392 Bacterial regulatory proteins, gntR family AMK58_05990 PF00155 Aminotransferase class I and II AMK58_06005 PF01027 Inhibitor of apoptosis-promoting Bax1 AMK58_06010 PF10011 Predicted membrane protein (DUF2254) AMK58_06025 PF02567 Phenazine biosynthesis-like protein AMK58_06030 PF01575 MaoC like domain AMK58_06030 PF00171 Aldehyde dehydrogenase family AMK58_06035 PF00012 Hsp70 protein AMK58_06040 PF03951 Glutamine synthetase, beta-Grasp domain AMK58_06040 PF00120 Glutamine synthetase, catalytic domain AMK58_06045 PF00543 Nitrogen regulatory protein P-II AMK58_06060 PF01256 Carbohydrate kinase AMK58_06060 PF03853 YjeF-related protein N-terminus AMK58_06075 PF05697 Bacterial trigger factor protein (TF) AMK58_06075 PF05698 Bacterial trigger factor protein (TF) C-terminus AMK58_06075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMK58_06080 PF00574 Clp protease AMK58_06085 PF07724 AAA domain (Cdc48 subfamily) AMK58_06085 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_06085 PF06689 ClpX C4-type zinc finger AMK58_06090 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_06090 PF05362 Lon protease (S16) C-terminal proteolytic domain AMK58_06090 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMK58_06095 PF00216 Bacterial DNA-binding protein AMK58_06110 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMK58_06115 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMK58_06120 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMK58_06125 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMK58_06135 PF10531 SLBB domain AMK58_06135 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMK58_06135 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMK58_06140 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AMK58_06140 PF00384 Molybdopterin oxidoreductase AMK58_06140 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMK58_06145 PF00146 NADH dehydrogenase AMK58_06150 PF12838 4Fe-4S dicluster domain AMK58_06155 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMK58_06160 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMK58_06165 PF00361 Proton-conducting membrane transporter AMK58_06165 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMK58_06170 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMK58_06170 PF00361 Proton-conducting membrane transporter AMK58_06175 PF00361 Proton-conducting membrane transporter AMK58_06180 PF03099 Biotin/lipoate A/B protein ligase family AMK58_06180 PF02237 Biotin protein ligase C terminal domain AMK58_06185 PF03309 Type III pantothenate kinase AMK58_06190 PF12706 Beta-lactamase superfamily domain AMK58_06190 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMK58_06190 PF17770 Ribonuclease J C-terminal domain AMK58_06205 PF00117 Glutamine amidotransferase class-I AMK58_06205 PF03352 Methyladenine glycosylase AMK58_06205 PF13302 Acetyltransferase (GNAT) domain AMK58_06205 PF13673 Acetyltransferase (GNAT) domain AMK58_06205 PF00958 GMP synthase C terminal domain AMK58_06220 PF03129 Anticodon binding domain AMK58_06220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMK58_06225 PF02687 FtsX-like permease family AMK58_06225 PF12704 MacB-like periplasmic core domain AMK58_06230 PF00005 ABC transporter AMK58_06235 PF01738 Dienelactone hydrolase family AMK58_06240 PF00892 EamA-like transporter family AMK58_06250 PF02811 PHP domain AMK58_06250 PF14579 Helix-hairpin-helix motif AMK58_06250 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMK58_06250 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMK58_06255 PF00318 Ribosomal protein S2 AMK58_06260 PF00889 Elongation factor TS AMK58_06265 PF00696 Amino acid kinase family AMK58_06270 PF01765 Ribosome recycling factor AMK58_06275 PF01255 Putative undecaprenyl diphosphate synthase AMK58_06285 PF13288 DXP reductoisomerase C-terminal domain AMK58_06285 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMK58_06285 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMK58_06290 PF17820 PDZ domain AMK58_06290 PF02163 Peptidase family M50 AMK58_06295 PF01103 Surface antigen AMK58_06295 PF07244 Surface antigen variable number repeat AMK58_06305 PF07977 FabA-like domain AMK58_06310 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMK58_06310 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_06315 PF17930 LpxI N-terminal domain AMK58_06315 PF06230 LpxI C-terminal domain AMK58_06320 PF02684 Lipid-A-disaccharide synthetase AMK58_06325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMK58_06335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_06335 PF03466 LysR substrate binding domain AMK58_06340 PF13417 Glutathione S-transferase, N-terminal domain AMK58_06350 PF00285 Citrate synthase, C-terminal domain AMK58_06355 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMK58_06360 PF00753 Metallo-beta-lactamase superfamily AMK58_06360 PF13567 Domain of unknown function (DUF4131) AMK58_06360 PF03772 Competence protein AMK58_06365 PF01726 LexA DNA binding domain AMK58_06365 PF00717 Peptidase S24-like AMK58_06370 PF03453 MoeA N-terminal region (domain I and II) AMK58_06370 PF00994 Probable molybdopterin binding domain AMK58_06370 PF03454 MoeA C-terminal region (domain IV) AMK58_06375 PF01967 MoaC family AMK58_06380 PF00583 Acetyltransferase (GNAT) family AMK58_06385 PF00218 Indole-3-glycerol phosphate synthase AMK58_06390 PF02885 Glycosyl transferase family, helical bundle domain AMK58_06390 PF00591 Glycosyl transferase family, a/b domain AMK58_06395 PF00117 Glutamine amidotransferase class-I AMK58_06420 PF00425 chorismate binding enzyme AMK58_06420 PF04715 Anthranilate synthase component I, N terminal region AMK58_06430 PF00121 Triosephosphate isomerase AMK58_06435 PF03840 Preprotein translocase SecG subunit AMK58_06440 PF06418 CTP synthase N-terminus AMK58_06440 PF00117 Glutamine amidotransferase class-I AMK58_06445 PF01738 Dienelactone hydrolase family AMK58_06450 PF00793 DAHP synthetase I family AMK58_06460 PF04055 Radical SAM superfamily AMK58_06460 PF13186 Iron-sulfur cluster-binding domain AMK58_06465 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMK58_06470 PF03070 TENA/THI-4/PQQC family AMK58_06475 PF12706 Beta-lactamase superfamily domain AMK58_06485 PF03952 Enolase, N-terminal domain AMK58_06485 PF00113 Enolase, C-terminal TIM barrel domain AMK58_06495 PF01171 PP-loop family AMK58_06500 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_06500 PF01434 Peptidase family M41 AMK58_06500 PF17862 AAA+ lid domain AMK58_06500 PF06480 FtsH Extracellular AMK58_06515 PF08534 Redoxin AMK58_06520 PF00221 Aromatic amino acid lyase AMK58_06525 PF00664 ABC transporter transmembrane region AMK58_06525 PF00005 ABC transporter AMK58_06530 PF00529 HlyD membrane-fusion protein of T1SS AMK58_06530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMK58_06535 PF00072 Response regulator receiver domain AMK58_06535 PF00196 Bacterial regulatory proteins, luxR family AMK58_06550 PF12697 Alpha/beta hydrolase family AMK58_06555 PF03023 Lipid II flippase MurJ AMK58_06565 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMK58_06575 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_06580 PF00155 Aminotransferase class I and II AMK58_06595 PF00005 ABC transporter AMK58_06600 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_06610 PF03960 ArsC family AMK58_06615 PF08448 PAS fold AMK58_06615 PF13188 PAS domain AMK58_06615 PF00072 Response regulator receiver domain AMK58_06615 PF00512 His Kinase A (phospho-acceptor) domain AMK58_06615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_06620 PF00072 Response regulator receiver domain AMK58_06625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_06625 PF00512 His Kinase A (phospho-acceptor) domain AMK58_06625 PF08448 PAS fold AMK58_06625 PF13188 PAS domain AMK58_06625 PF00072 Response regulator receiver domain AMK58_06630 PF00072 Response regulator receiver domain AMK58_06630 PF00486 Transcriptional regulatory protein, C terminal AMK58_06635 PF17200 Single Cache domain 2 AMK58_06635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_06635 PF00672 HAMP domain AMK58_06645 PF01738 Dienelactone hydrolase family AMK58_06645 PF00156 Phosphoribosyl transferase domain AMK58_06665 PF00512 His Kinase A (phospho-acceptor) domain AMK58_06665 PF17149 Periplasmic sensor domain found in signal transduction proteins AMK58_06665 PF00072 Response regulator receiver domain AMK58_06665 PF01627 Hpt domain AMK58_06665 PF00672 HAMP domain AMK58_06665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_06680 PF03091 CutA1 divalent ion tolerance protein AMK58_06695 PF01053 Cys/Met metabolism PLP-dependent enzyme AMK58_06700 PF13380 CoA binding domain AMK58_06705 PF00378 Enoyl-CoA hydratase/isomerase AMK58_06715 PF00572 Ribosomal protein L13 AMK58_06720 PF00380 Ribosomal protein S9/S16 AMK58_06725 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMK58_06725 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMK58_06730 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_06735 PF00691 OmpA family AMK58_06740 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AMK58_06740 PF00561 alpha/beta hydrolase fold AMK58_06750 PF01047 MarR family AMK58_06755 PF07690 Major Facilitator Superfamily AMK58_06765 PF00155 Aminotransferase class I and II AMK58_06770 PF03447 Homoserine dehydrogenase, NAD binding domain AMK58_06770 PF01842 ACT domain AMK58_06770 PF00742 Homoserine dehydrogenase AMK58_06775 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AMK58_06780 PF00465 Iron-containing alcohol dehydrogenase AMK58_06785 PF01368 DHH family AMK58_06785 PF02272 DHHA1 domain AMK58_06785 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AMK58_06785 PF17768 RecJ OB domain AMK58_06795 PF08463 EcoEI R protein C-terminal AMK58_06795 PF00271 Helicase conserved C-terminal domain AMK58_06795 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AMK58_06795 PF04851 Type III restriction enzyme, res subunit AMK58_06800 PF02384 N-6 DNA Methylase AMK58_06800 PF12161 HsdM N-terminal domain AMK58_06805 PF01420 Type I restriction modification DNA specificity domain AMK58_06845 PF00248 Aldo/keto reductase family AMK58_06855 PF07690 Major Facilitator Superfamily AMK58_06860 PF00850 Histone deacetylase domain AMK58_06870 PF02558 Ketopantoate reductase PanE/ApbA AMK58_06870 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMK58_06875 PF00571 CBS domain AMK58_06880 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMK58_06880 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMK58_06885 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMK58_06890 PF02233 NAD(P) transhydrogenase beta subunit AMK58_06895 PF00571 CBS domain AMK58_06900 PF00392 Bacterial regulatory proteins, gntR family AMK58_06900 PF07729 FCD domain AMK58_06905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_06905 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_06905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_06910 PF02515 CoA-transferase family III AMK58_06915 PF08442 ATP-grasp domain AMK58_06915 PF00549 CoA-ligase AMK58_06920 PF00549 CoA-ligase AMK58_06920 PF02629 CoA binding domain AMK58_06925 PF07690 Major Facilitator Superfamily AMK58_06930 PF07690 Major Facilitator Superfamily AMK58_06940 PF13667 ThiC-associated domain AMK58_06940 PF01964 Radical SAM ThiC family AMK58_06945 PF07690 Major Facilitator Superfamily AMK58_06950 PF13660 Domain of unknown function (DUF4147) AMK58_06950 PF05161 MOFRL family AMK58_06955 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_06955 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMK58_06960 PF01261 Xylose isomerase-like TIM barrel AMK58_06965 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_06965 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_06965 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_06970 PF02110 Hydroxyethylthiazole kinase family AMK58_06970 PF02581 Thiamine monophosphate synthase AMK58_06975 PF00392 Bacterial regulatory proteins, gntR family AMK58_06975 PF07729 FCD domain AMK58_06980 PF02887 Pyruvate kinase, alpha/beta domain AMK58_06980 PF00224 Pyruvate kinase, barrel domain AMK58_06990 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMK58_06990 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_06990 PF00391 PEP-utilising enzyme, mobile domain AMK58_07005 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_07015 PF18024 Helix-turn-helix domain AMK58_07015 PF00158 Sigma-54 interaction domain AMK58_07020 PF01266 FAD dependent oxidoreductase AMK58_07030 PF01965 DJ-1/PfpI family AMK58_07035 PF00196 Bacterial regulatory proteins, luxR family AMK58_07035 PF00072 Response regulator receiver domain AMK58_07040 PF00072 Response regulator receiver domain AMK58_07040 PF00196 Bacterial regulatory proteins, luxR family AMK58_07045 PF00941 FAD binding domain in molybdopterin dehydrogenase AMK58_07045 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMK58_07050 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_07050 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_07055 PF01774 UreD urease accessory protein AMK58_07060 PF00547 Urease, gamma subunit AMK58_07065 PF00699 Urease beta subunit AMK58_07070 PF01979 Amidohydrolase family AMK58_07070 PF00449 Urease alpha-subunit, N-terminal domain AMK58_07075 PF01177 Asp/Glu/Hydantoin racemase AMK58_07080 PF02814 UreE urease accessory protein, N-terminal domain AMK58_07080 PF05194 UreE urease accessory protein, C-terminal domain AMK58_07085 PF01730 UreF AMK58_07090 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMK58_07095 PF05239 PRC-barrel domain AMK58_07095 PF09557 Domain of unknown function (DUF2382) AMK58_07120 PF01022 Bacterial regulatory protein, arsR family AMK58_07145 PF00535 Glycosyl transferase family 2 AMK58_07150 PF01381 Helix-turn-helix AMK58_07170 PF00795 Carbon-nitrogen hydrolase AMK58_07175 PF01047 MarR family AMK58_07185 PF01895 PhoU domain AMK58_07200 PF13180 PDZ domain AMK58_07205 PF00535 Glycosyl transferase family 2 AMK58_07225 PF00480 ROK family AMK58_07235 PF02653 Branched-chain amino acid transport system / permease component AMK58_07240 PF11862 Domain of unknown function (DUF3382) AMK58_07240 PF02653 Branched-chain amino acid transport system / permease component AMK58_07245 PF00005 ABC transporter AMK58_07245 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_07250 PF00005 ABC transporter AMK58_07260 PF13458 Periplasmic binding protein AMK58_07275 PF00691 OmpA family AMK58_07280 PF00072 Response regulator receiver domain AMK58_07280 PF00196 Bacterial regulatory proteins, luxR family AMK58_07285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_07285 PF00072 Response regulator receiver domain AMK58_07285 PF01627 Hpt domain AMK58_07285 PF00672 HAMP domain AMK58_07285 PF00512 His Kinase A (phospho-acceptor) domain AMK58_07290 PF10371 Domain of unknown function AMK58_07290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_07290 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMK58_07290 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AMK58_07290 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMK58_07300 PF00849 RNA pseudouridylate synthase AMK58_07310 PF00156 Phosphoribosyl transferase domain AMK58_07310 PF13537 Glutamine amidotransferase domain AMK58_07320 PF06745 KaiC AMK58_07320 PF18073 Rubredoxin metal binding domain AMK58_07325 PF00557 Metallopeptidase family M24 AMK58_07340 PF00005 ABC transporter AMK58_07345 PF02405 Permease MlaE AMK58_07350 PF01168 Alanine racemase, N-terminal domain AMK58_07350 PF00842 Alanine racemase, C-terminal domain AMK58_07355 PF03796 DnaB-like helicase C terminal domain AMK58_07355 PF00772 DnaB-like helicase N terminal domain AMK58_07365 PF03948 Ribosomal protein L9, C-terminal domain AMK58_07365 PF01281 Ribosomal protein L9, N-terminal domain AMK58_07375 PF01084 Ribosomal protein S18 AMK58_07380 PF01250 Ribosomal protein S6 AMK58_07385 PF00698 Acyl transferase domain AMK58_07395 PF00550 Phosphopantetheine attachment site AMK58_07400 PF00109 Beta-ketoacyl synthase, N-terminal domain AMK58_07400 PF02801 Beta-ketoacyl synthase, C-terminal domain AMK58_07405 PF02618 YceG-like family AMK58_07415 PF01464 Transglycosylase SLT domain AMK58_07420 PF00701 Dihydrodipicolinate synthetase family AMK58_07425 PF01668 SmpB protein AMK58_07430 PF05175 Methyltransferase small domain AMK58_07430 PF08468 Methyltransferase small domain N-terminal AMK58_07440 PF01161 Phosphatidylethanolamine-binding protein AMK58_07445 PF00490 Delta-aminolevulinic acid dehydratase AMK58_07450 PF00149 Calcineurin-like phosphoesterase AMK58_07455 PF00781 Diacylglycerol kinase catalytic domain AMK58_07460 PF00378 Enoyl-CoA hydratase/isomerase AMK58_07465 PF12802 MarR family AMK58_07470 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_07470 PF00005 ABC transporter AMK58_07475 PF00005 ABC transporter AMK58_07485 PF02653 Branched-chain amino acid transport system / permease component AMK58_07500 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMK58_07500 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMK58_07510 PF00149 Calcineurin-like phosphoesterase AMK58_07510 PF02872 5'-nucleotidase, C-terminal domain AMK58_07515 PF00117 Glutamine amidotransferase class-I AMK58_07520 PF02348 Cytidylyltransferase AMK58_07525 PF13478 XdhC Rossmann domain AMK58_07525 PF02625 XdhC and CoxI family AMK58_07540 PF17871 AAA lid domain AMK58_07540 PF07724 AAA domain (Cdc48 subfamily) AMK58_07540 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_07540 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_07540 PF02861 Clp amino terminal domain, pathogenicity island component AMK58_07545 PF00941 FAD binding domain in molybdopterin dehydrogenase AMK58_07545 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMK58_07550 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_07550 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_07555 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_07555 PF01799 [2Fe-2S] binding domain AMK58_07560 PF16868 NMT1-like family AMK58_07590 PF00850 Histone deacetylase domain AMK58_07635 PF01502 Phosphoribosyl-AMP cyclohydrolase AMK58_07640 PF01053 Cys/Met metabolism PLP-dependent enzyme AMK58_07645 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_07650 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_07655 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_07660 PF00005 ABC transporter AMK58_07665 PF00155 Aminotransferase class I and II AMK58_07685 PF00581 Rhodanese-like domain AMK58_07690 PF02272 DHHA1 domain AMK58_07690 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMK58_07690 PF01411 tRNA synthetases class II (A) AMK58_07695 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_07695 PF00571 CBS domain AMK58_07700 PF00293 NUDIX domain AMK58_07705 PF00595 PDZ domain AMK58_07705 PF13180 PDZ domain AMK58_07740 PF02321 Outer membrane efflux protein AMK58_07750 PF10458 Valyl tRNA synthetase tRNA binding arm AMK58_07750 PF08264 Anticodon-binding domain of tRNA AMK58_07750 PF00133 tRNA synthetases class I (I, L, M and V) AMK58_07755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_07755 PF00672 HAMP domain AMK58_07765 PF03330 Lytic transglycolase AMK58_07765 PF05036 Sporulation related domain AMK58_07770 PF00768 D-alanyl-D-alanine carboxypeptidase AMK58_07770 PF07943 Penicillin-binding protein 5, C-terminal domain AMK58_07775 PF02223 Thymidylate kinase AMK58_07780 PF09115 DNA polymerase III, delta subunit, C terminal AMK58_07785 PF09334 tRNA synthetases class I (M) AMK58_07785 PF08264 Anticodon-binding domain of tRNA AMK58_07790 PF01026 TatD related DNase AMK58_07795 PF03099 Biotin/lipoate A/B protein ligase family AMK58_07795 PF12706 Beta-lactamase superfamily domain AMK58_07820 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMK58_07825 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_07830 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_07835 PF00005 ABC transporter AMK58_07835 PF08402 TOBE domain AMK58_07840 PF13416 Bacterial extracellular solute-binding protein AMK58_07845 PF00120 Glutamine synthetase, catalytic domain AMK58_07850 PF01266 FAD dependent oxidoreductase AMK58_07880 PF03741 Integral membrane protein TerC family AMK58_07885 PF00216 Bacterial DNA-binding protein AMK58_07890 PF05443 ROS/MUCR transcriptional regulator protein AMK58_07900 PF04542 Sigma-70 region 2 AMK58_07900 PF00140 Sigma-70 factor, region 1.2 AMK58_07900 PF04545 Sigma-70, region 4 AMK58_07925 PF01810 LysE type translocator AMK58_07935 PF02391 MoaE protein AMK58_07940 PF02597 ThiS family AMK58_07945 PF03454 MoeA C-terminal region (domain IV) AMK58_07945 PF00994 Probable molybdopterin binding domain AMK58_07945 PF03453 MoeA N-terminal region (domain I and II) AMK58_07950 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AMK58_07955 PF01066 CDP-alcohol phosphatidyltransferase AMK58_07960 PF02151 UvrB/uvrC motif AMK58_07960 PF12826 Helix-hairpin-helix motif AMK58_07960 PF01541 GIY-YIG catalytic domain AMK58_07960 PF08459 UvrC Helix-hairpin-helix N-terminal AMK58_08005 PF00501 AMP-binding enzyme AMK58_08005 PF00550 Phosphopantetheine attachment site AMK58_08005 PF13193 AMP-binding enzyme C-terminal domain AMK58_08010 PF05681 Fumarate hydratase (Fumerase) AMK58_08010 PF05683 Fumarase C-terminus AMK58_08015 PF01926 50S ribosome-binding GTPase AMK58_08015 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMK58_08035 PF00196 Bacterial regulatory proteins, luxR family AMK58_08035 PF00072 Response regulator receiver domain AMK58_08045 PF00196 Bacterial regulatory proteins, luxR family AMK58_08045 PF00072 Response regulator receiver domain AMK58_08060 PF02705 K+ potassium transporter AMK58_08075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_08075 PF02203 Tar ligand binding domain homologue AMK58_08075 PF00672 HAMP domain AMK58_08085 PF00072 Response regulator receiver domain AMK58_08085 PF00990 Diguanylate cyclase, GGDEF domain AMK58_08090 PF00155 Aminotransferase class I and II AMK58_08095 PF03186 CobD/Cbib protein AMK58_08100 PF16653 Saccharopine dehydrogenase C-terminal domain AMK58_08100 PF03435 Saccharopine dehydrogenase NADP binding domain AMK58_08115 PF03079 ARD/ARD' family AMK58_08120 PF07690 Major Facilitator Superfamily AMK58_08135 PF13411 MerR HTH family regulatory protein AMK58_08140 PF00501 AMP-binding enzyme AMK58_08140 PF13193 AMP-binding enzyme C-terminal domain AMK58_08160 PF00005 ABC transporter AMK58_08170 PF00005 ABC transporter AMK58_08175 PF00009 Elongation factor Tu GTP binding domain AMK58_08180 PF01507 Phosphoadenosine phosphosulfate reductase family AMK58_08185 PF01507 Phosphoadenosine phosphosulfate reductase family AMK58_08190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_08190 PF14824 Sirohaem biosynthesis protein central AMK58_08190 PF10414 Sirohaem synthase dimerisation region AMK58_08195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_08205 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMK58_08205 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMK58_08220 PF00999 Sodium/hydrogen exchanger family AMK58_08220 PF02254 TrkA-N domain AMK58_08235 PF13411 MerR HTH family regulatory protein AMK58_08240 PF00216 Bacterial DNA-binding protein AMK58_08245 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMK58_08245 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMK58_08250 PF02504 Fatty acid synthesis protein AMK58_08255 PF01783 Ribosomal L32p protein family AMK58_08275 PF03030 Inorganic H+ pyrophosphatase AMK58_08285 PF02769 AIR synthase related protein, C-terminal domain AMK58_08285 PF00586 AIR synthase related protein, N-terminal domain AMK58_08290 PF01029 NusB family AMK58_08295 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMK58_08300 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMK58_08300 PF00925 GTP cyclohydrolase II AMK58_08305 PF00677 Lumazine binding domain AMK58_08310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMK58_08310 PF01872 RibD C-terminal domain AMK58_08315 PF03477 ATP cone domain AMK58_08320 PF00464 Serine hydroxymethyltransferase AMK58_08325 PF02502 Ribose/Galactose Isomerase AMK58_08330 PF05443 ROS/MUCR transcriptional regulator protein AMK58_08345 PF05974 Domain of unknown function (DUF892) AMK58_08365 PF13673 Acetyltransferase (GNAT) domain AMK58_08375 PF04679 ATP dependent DNA ligase C terminal region AMK58_08375 PF04675 DNA ligase N terminus AMK58_08375 PF01068 ATP dependent DNA ligase domain AMK58_08385 PF04227 Indigoidine synthase A like protein AMK58_08395 PF01048 Phosphorylase superfamily AMK58_08440 PF00325 Bacterial regulatory proteins, crp family AMK58_08440 PF00027 Cyclic nucleotide-binding domain AMK58_08450 PF13545 Crp-like helix-turn-helix domain AMK58_08450 PF00027 Cyclic nucleotide-binding domain AMK58_08460 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AMK58_08465 PF02797 Chalcone and stilbene synthases, C-terminal domain AMK58_08465 PF00195 Chalcone and stilbene synthases, N-terminal domain AMK58_08485 PF00872 Transposase, Mutator family AMK58_08490 PF00270 DEAD/DEAH box helicase AMK58_08490 PF00271 Helicase conserved C-terminal domain AMK58_08490 PF17191 RecG wedge domain AMK58_08495 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMK58_08495 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_08500 PF12557 Cob(I)alamin adenosyltransferase N terminal AMK58_08500 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMK58_08505 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMK58_08535 PF00472 RF-1 domain AMK58_08555 PF02559 CarD-like/TRCF domain AMK58_08555 PF00271 Helicase conserved C-terminal domain AMK58_08555 PF17757 UvrB interaction domain AMK58_08555 PF03461 TRCF domain AMK58_08555 PF00270 DEAD/DEAH box helicase AMK58_08565 PF00378 Enoyl-CoA hydratase/isomerase AMK58_08575 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_08575 PF12867 DinB superfamily AMK58_08595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMK58_08595 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_08600 PF05067 Manganese containing catalase AMK58_08605 PF07690 Major Facilitator Superfamily AMK58_08610 PF01474 Class-II DAHP synthetase family AMK58_08620 PF00171 Aldehyde dehydrogenase family AMK58_08625 PF02569 Pantoate-beta-alanine ligase AMK58_08655 PF13419 Haloacid dehalogenase-like hydrolase AMK58_08660 PF12804 MobA-like NTP transferase domain AMK58_08660 PF14602 Hexapeptide repeat of succinyl-transferase AMK58_08660 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_08665 PF01380 SIS domain AMK58_08670 PF05951 Bacterial protein of unknown function (DUF882) AMK58_08680 PF00301 Rubredoxin AMK58_08695 PF01734 Patatin-like phospholipase AMK58_08700 PF18125 RlmM ferredoxin-like domain AMK58_08700 PF01728 FtsJ-like methyltransferase AMK58_08720 PF00989 PAS fold AMK58_08720 PF00512 His Kinase A (phospho-acceptor) domain AMK58_08720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_08725 PF00072 Response regulator receiver domain AMK58_08725 PF00196 Bacterial regulatory proteins, luxR family AMK58_08730 PF00512 His Kinase A (phospho-acceptor) domain AMK58_08730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_08730 PF00989 PAS fold AMK58_08735 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_08740 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMK58_08745 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_08750 PF03831 PhnA domain AMK58_08750 PF08274 PhnA Zinc-Ribbon AMK58_08755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_08765 PF01568 Molydopterin dinucleotide binding domain AMK58_08765 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_08765 PF00384 Molybdopterin oxidoreductase AMK58_08770 PF03060 Nitronate monooxygenase AMK58_08775 PF00990 Diguanylate cyclase, GGDEF domain AMK58_08790 PF00809 Pterin binding enzyme AMK58_08790 PF02607 B12 binding domain AMK58_08790 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMK58_08790 PF02574 Homocysteine S-methyltransferase AMK58_08790 PF02310 B12 binding domain AMK58_08800 PF02219 Methylenetetrahydrofolate reductase AMK58_08805 PF03551 Transcriptional regulator PadR-like family AMK58_08805 PF13847 Methyltransferase domain AMK58_08810 PF04333 MlaA lipoprotein AMK58_08825 PF00005 ABC transporter AMK58_08825 PF12848 ABC transporter AMK58_08830 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AMK58_08835 PF00929 Exonuclease AMK58_08855 PF00210 Ferritin-like domain AMK58_08860 PF02446 4-alpha-glucanotransferase AMK58_08865 PF00486 Transcriptional regulatory protein, C terminal AMK58_08865 PF00072 Response regulator receiver domain AMK58_08870 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMK58_08870 PF00128 Alpha amylase, catalytic domain AMK58_08875 PF00128 Alpha amylase, catalytic domain AMK58_08875 PF02806 Alpha amylase, C-terminal all-beta domain AMK58_08875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMK58_08880 PF16657 Maltogenic Amylase, C-terminal domain AMK58_08880 PF00128 Alpha amylase, catalytic domain AMK58_08895 PF00459 Inositol monophosphatase family AMK58_08900 PF04305 Protein of unknown function (DUF455) AMK58_08915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_08915 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_08915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_08925 PF00501 AMP-binding enzyme AMK58_08925 PF13193 AMP-binding enzyme C-terminal domain AMK58_08930 PF00325 Bacterial regulatory proteins, crp family AMK58_08930 PF00027 Cyclic nucleotide-binding domain AMK58_08935 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_08940 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_08960 PF01389 OmpA-like transmembrane domain AMK58_08960 PF00691 OmpA family AMK58_08980 PF13545 Crp-like helix-turn-helix domain AMK58_08980 PF00027 Cyclic nucleotide-binding domain AMK58_08990 PF12802 MarR family AMK58_08995 PF00561 alpha/beta hydrolase fold AMK58_09010 PF01209 ubiE/COQ5 methyltransferase family AMK58_09020 PF00271 Helicase conserved C-terminal domain AMK58_09020 PF00270 DEAD/DEAH box helicase AMK58_09020 PF08494 DEAD/H associated AMK58_09030 PF02469 Fasciclin domain AMK58_09035 PF03441 FAD binding domain of DNA photolyase AMK58_09035 PF00875 DNA photolyase AMK58_09045 PF01475 Ferric uptake regulator family AMK58_09050 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMK58_09050 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMK58_09060 PF00535 Glycosyl transferase family 2 AMK58_09065 PF03600 Citrate transporter AMK58_09070 PF12706 Beta-lactamase superfamily domain AMK58_09080 PF00672 HAMP domain AMK58_09080 PF12729 Four helix bundle sensory module for signal transduction AMK58_09080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_09085 PF13426 PAS domain AMK58_09085 PF00672 HAMP domain AMK58_09085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_09090 PF16916 Dimerisation domain of Zinc Transporter AMK58_09090 PF01545 Cation efflux family AMK58_09095 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMK58_09095 PF01243 Pyridoxamine 5'-phosphate oxidase AMK58_09100 PF05433 Glycine zipper 2TM domain AMK58_09100 PF16998 17 kDa outer membrane surface antigen AMK58_09105 PF00684 DnaJ central domain AMK58_09105 PF00226 DnaJ domain AMK58_09105 PF01556 DnaJ C terminal domain AMK58_09110 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_09110 PF06480 FtsH Extracellular AMK58_09110 PF01434 Peptidase family M41 AMK58_09110 PF17862 AAA+ lid domain AMK58_09125 PF00072 Response regulator receiver domain AMK58_09125 PF00486 Transcriptional regulatory protein, C terminal AMK58_09130 PF00512 His Kinase A (phospho-acceptor) domain AMK58_09130 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_09130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_09135 PF09345 Domain of unknown function (DUF1987) AMK58_09145 PF11849 Domain of unknown function (DUF3369) AMK58_09170 PF00893 Small Multidrug Resistance protein AMK58_09175 PF00106 short chain dehydrogenase AMK58_09180 PF02566 OsmC-like protein AMK58_09190 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMK58_09200 PF00892 EamA-like transporter family AMK58_09205 PF00733 Asparagine synthase AMK58_09205 PF13537 Glutamine amidotransferase domain AMK58_09215 PF01370 NAD dependent epimerase/dehydratase family AMK58_09220 PF13477 Glycosyl transferase 4-like AMK58_09220 PF00534 Glycosyl transferases group 1 AMK58_09225 PF00953 Glycosyl transferase family 4 AMK58_09230 PF01370 NAD dependent epimerase/dehydratase family AMK58_09235 PF02719 Polysaccharide biosynthesis protein AMK58_09245 PF00691 OmpA family AMK58_09250 PF07676 WD40-like Beta Propeller Repeat AMK58_09250 PF04052 TolB amino-terminal domain AMK58_09260 PF02472 Biopolymer transport protein ExbD/TolR AMK58_09265 PF01618 MotA/TolQ/ExbB proton channel family AMK58_09270 PF03061 Thioesterase superfamily AMK58_09275 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMK58_09275 PF05491 RuvB C-terminal winged helix domain AMK58_09275 PF17864 RuvB AAA lid domain AMK58_09280 PF07499 RuvA, C-terminal domain AMK58_09280 PF01330 RuvA N terminal domain AMK58_09285 PF02075 Crossover junction endodeoxyribonuclease RuvC AMK58_09290 PF01709 Transcriptional regulator AMK58_09295 PF13277 YmdB-like protein AMK58_09300 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMK58_09315 PF02780 Transketolase, C-terminal domain AMK58_09315 PF02779 Transketolase, pyrimidine binding domain AMK58_09315 PF00456 Transketolase, thiamine diphosphate binding domain AMK58_09320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMK58_09320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMK58_09340 PF01791 DeoC/LacD family aldolase AMK58_09345 PF02581 Thiamine monophosphate synthase AMK58_09350 PF01925 Sulfite exporter TauE/SafE AMK58_09355 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMK58_09360 PF00107 Zinc-binding dehydrogenase AMK58_09360 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_09365 PF00152 tRNA synthetases class II (D, K and N) AMK58_09370 PF08207 Elongation factor P (EF-P) KOW-like domain AMK58_09370 PF09285 Elongation factor P, C-terminal AMK58_09370 PF01132 Elongation factor P (EF-P) OB domain AMK58_09375 PF00459 Inositol monophosphatase family AMK58_09390 PF00691 OmpA family AMK58_09390 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMK58_09395 PF00266 Aminotransferase class-V AMK58_09400 PF02347 Glycine cleavage system P-protein AMK58_09405 PF01597 Glycine cleavage H-protein AMK58_09410 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMK58_09410 PF01571 Aminomethyltransferase folate-binding domain AMK58_09425 PF02401 LytB protein AMK58_09430 PF01636 Phosphotransferase enzyme family AMK58_09435 PF00075 RNase H AMK58_09440 PF00501 AMP-binding enzyme AMK58_09440 PF13193 AMP-binding enzyme C-terminal domain AMK58_09445 PF08534 Redoxin AMK58_09450 PF11412 Disulphide bond corrector protein DsbC AMK58_09450 PF02683 Cytochrome C biogenesis protein transmembrane region AMK58_09455 PF02622 Uncharacterized ACR, COG1678 AMK58_09465 PF13302 Acetyltransferase (GNAT) domain AMK58_09470 PF05193 Peptidase M16 inactive domain AMK58_09470 PF00675 Insulinase (Peptidase family M16) AMK58_09475 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_09475 PF14821 Threonine synthase N terminus AMK58_09480 PF00150 Cellulase (glycosyl hydrolase family 5) AMK58_09485 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AMK58_09490 PF02104 SURF1 family AMK58_09500 PF00510 Cytochrome c oxidase subunit III AMK58_09505 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMK58_09510 PF01040 UbiA prenyltransferase family AMK58_09515 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_09520 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMK58_09520 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMK58_09530 PF01523 Putative modulator of DNA gyrase AMK58_09535 PF08335 GlnD PII-uridylyltransferase AMK58_09535 PF01842 ACT domain AMK58_09535 PF01966 HD domain AMK58_09535 PF01909 Nucleotidyltransferase domain AMK58_09540 PF06082 Exopolysaccharide biosynthesis protein YbjH AMK58_09550 PF07043 Protein of unknown function (DUF1328) AMK58_09555 PF04542 Sigma-70 region 2 AMK58_09555 PF08281 Sigma-70, region 4 AMK58_09560 PF01464 Transglycosylase SLT domain AMK58_09565 PF17843 MycE methyltransferase N-terminal AMK58_09580 PF01212 Beta-eliminating lyase AMK58_09590 PF00849 RNA pseudouridylate synthase AMK58_09595 PF00140 Sigma-70 factor, region 1.2 AMK58_09595 PF04542 Sigma-70 region 2 AMK58_09595 PF04545 Sigma-70, region 4 AMK58_09605 PF00069 Protein kinase domain AMK58_09610 PF00709 Adenylosuccinate synthetase AMK58_09615 PF13393 Histidyl-tRNA synthetase AMK58_09625 PF02386 Cation transport protein AMK58_09640 PF06463 Molybdenum Cofactor Synthesis C AMK58_09640 PF04055 Radical SAM superfamily AMK58_09645 PF03631 Virulence factor BrkB AMK58_09660 PF01264 Chorismate synthase AMK58_09670 PF00486 Transcriptional regulatory protein, C terminal AMK58_09670 PF00072 Response regulator receiver domain AMK58_09680 PF01343 Peptidase family S49 AMK58_09690 PF03705 CheR methyltransferase, all-alpha domain AMK58_09690 PF08448 PAS fold AMK58_09690 PF01339 CheB methylesterase AMK58_09690 PF01739 CheR methyltransferase, SAM binding domain AMK58_09695 PF00072 Response regulator receiver domain AMK58_09695 PF00512 His Kinase A (phospho-acceptor) domain AMK58_09695 PF18415 Histidine kinase receptor ArcB trans-membrane domain AMK58_09695 PF01627 Hpt domain AMK58_09695 PF00989 PAS fold AMK58_09695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_09705 PF03649 Uncharacterised protein family (UPF0014) AMK58_09710 PF00005 ABC transporter AMK58_09710 PF02687 FtsX-like permease family AMK58_09710 PF12704 MacB-like periplasmic core domain AMK58_09715 PF07690 Major Facilitator Superfamily AMK58_09720 PF01594 AI-2E family transporter AMK58_09725 PF00512 His Kinase A (phospho-acceptor) domain AMK58_09725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_09725 PF00672 HAMP domain AMK58_09730 PF00072 Response regulator receiver domain AMK58_09730 PF00486 Transcriptional regulatory protein, C terminal AMK58_09735 PF13180 PDZ domain AMK58_09745 PF00679 Elongation factor G C-terminus AMK58_09745 PF03764 Elongation factor G, domain IV AMK58_09745 PF00009 Elongation factor Tu GTP binding domain AMK58_09745 PF14492 Elongation Factor G, domain II AMK58_09745 PF03144 Elongation factor Tu domain 2 AMK58_09750 PF01042 Endoribonuclease L-PSP AMK58_09760 PF01131 DNA topoisomerase AMK58_09760 PF01751 Toprim domain AMK58_09780 PF07238 PilZ domain AMK58_09780 PF00535 Glycosyl transferase family 2 AMK58_09780 PF03552 Cellulose synthase AMK58_09790 PF00633 Helix-hairpin-helix motif AMK58_09790 PF00730 HhH-GPD superfamily base excision DNA repair protein AMK58_09790 PF10576 Iron-sulfur binding domain of endonuclease III AMK58_09800 PF00271 Helicase conserved C-terminal domain AMK58_09800 PF04434 SWIM zinc finger AMK58_09800 PF00176 SNF2 family N-terminal domain AMK58_09820 PF00696 Amino acid kinase family AMK58_09820 PF00583 Acetyltransferase (GNAT) family AMK58_09830 PF04539 Sigma-70 region 3 AMK58_09830 PF04545 Sigma-70, region 4 AMK58_09830 PF04546 Sigma-70, non-essential region AMK58_09830 PF04542 Sigma-70 region 2 AMK58_09830 PF00140 Sigma-70 factor, region 1.2 AMK58_09830 PF03979 Sigma-70 factor, region 1.1 AMK58_09835 PF01807 CHC2 zinc finger AMK58_09835 PF08275 DNA primase catalytic core, N-terminal domain AMK58_09835 PF08278 DNA primase DnaG DnaB-binding AMK58_09835 PF10410 DnaB-helicase binding domain of primase AMK58_09835 PF13662 Toprim domain AMK58_09845 PF00117 Glutamine amidotransferase class-I AMK58_09845 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMK58_09850 PF08448 PAS fold AMK58_09850 PF00512 His Kinase A (phospho-acceptor) domain AMK58_09850 PF00072 Response regulator receiver domain AMK58_09850 PF13188 PAS domain AMK58_09850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_09865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMK58_09865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_09870 PF03960 ArsC family AMK58_09875 PF05175 Methyltransferase small domain AMK58_09880 PF00814 Glycoprotease family AMK58_09880 PF00583 Acetyltransferase (GNAT) family AMK58_09890 PF01066 CDP-alcohol phosphatidyltransferase AMK58_09895 PF02666 Phosphatidylserine decarboxylase AMK58_09915 PF03641 Possible lysine decarboxylase AMK58_09920 PF00180 Isocitrate/isopropylmalate dehydrogenase AMK58_09930 PF06055 Exopolysaccharide synthesis, ExoD AMK58_09945 PF08281 Sigma-70, region 4 AMK58_09945 PF04542 Sigma-70 region 2 AMK58_09950 PF00180 Isocitrate/isopropylmalate dehydrogenase AMK58_09950 PF18324 Hypothetical protein TT1725 AMK58_09980 PF02824 TGS domain AMK58_09980 PF04607 Region found in RelA / SpoT proteins AMK58_09980 PF13291 ACT domain AMK58_09985 PF13746 4Fe-4S dicluster domain AMK58_09985 PF12801 4Fe-4S binding domain AMK58_09985 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMK58_10000 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_10000 PF13291 ACT domain AMK58_10015 PF02272 DHHA1 domain AMK58_10015 PF01411 tRNA synthetases class II (A) AMK58_10015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMK58_10020 PF00154 recA bacterial DNA recombination protein AMK58_10030 PF13188 PAS domain AMK58_10030 PF00512 His Kinase A (phospho-acceptor) domain AMK58_10030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_10030 PF08448 PAS fold AMK58_10030 PF00072 Response regulator receiver domain AMK58_10035 PF01312 FlhB HrpN YscU SpaS Family AMK58_10040 PF01311 Bacterial export proteins, family 1 AMK58_10045 PF01313 Bacterial export proteins, family 3 AMK58_10050 PF02049 Flagellar hook-basal body complex protein FliE AMK58_10055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_10060 PF00460 Flagella basal body rod protein AMK58_10065 PF01312 FlhB HrpN YscU SpaS Family AMK58_10080 PF00813 FliP family AMK58_10085 PF02705 K+ potassium transporter AMK58_10095 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMK58_10095 PF00691 OmpA family AMK58_10125 PF02154 Flagellar motor switch protein FliM AMK58_10125 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMK58_10135 PF00460 Flagella basal body rod protein AMK58_10135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_10140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_10140 PF00460 Flagella basal body rod protein AMK58_10150 PF02107 Flagellar L-ring protein AMK58_10155 PF17843 MycE methyltransferase N-terminal AMK58_10160 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMK58_10165 PF10768 Class II flagellar assembly regulator AMK58_10170 PF02119 Flagellar P-ring protein AMK58_10175 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMK58_10175 PF10135 Rod binding protein AMK58_10190 PF03963 Flagellar hook capping protein - N-terminal region AMK58_10215 PF13847 Methyltransferase domain AMK58_10215 PF10119 Predicted methyltransferase regulatory domain AMK58_10225 PF00664 ABC transporter transmembrane region AMK58_10225 PF00005 ABC transporter AMK58_10230 PF01197 Ribosomal protein L31 AMK58_10240 PF00011 Hsp20/alpha crystallin family AMK58_10245 PF13188 PAS domain AMK58_10245 PF00512 His Kinase A (phospho-acceptor) domain AMK58_10245 PF00989 PAS fold AMK58_10245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_10250 PF00364 Biotin-requiring enzyme AMK58_10250 PF00561 alpha/beta hydrolase fold AMK58_10255 PF01053 Cys/Met metabolism PLP-dependent enzyme AMK58_10260 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMK58_10275 PF00392 Bacterial regulatory proteins, gntR family AMK58_10275 PF07729 FCD domain AMK58_10280 PF05191 Adenylate kinase, active site lid AMK58_10285 PF00344 SecY translocase AMK58_10290 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMK58_10295 PF00327 Ribosomal protein L30p/L7e AMK58_10300 PF00333 Ribosomal protein S5, N-terminal domain AMK58_10300 PF03719 Ribosomal protein S5, C-terminal domain AMK58_10305 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMK58_10310 PF00347 Ribosomal protein L6 AMK58_10315 PF00410 Ribosomal protein S8 AMK58_10320 PF00253 Ribosomal protein S14p/S29e AMK58_10325 PF00281 Ribosomal protein L5 AMK58_10325 PF00673 ribosomal L5P family C-terminus AMK58_10330 PF00467 KOW motif AMK58_10330 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMK58_10335 PF00238 Ribosomal protein L14p/L23e AMK58_10340 PF00366 Ribosomal protein S17 AMK58_10345 PF00831 Ribosomal L29 protein AMK58_10350 PF00252 Ribosomal protein L16p/L10e AMK58_10355 PF00189 Ribosomal protein S3, C-terminal domain AMK58_10355 PF07650 KH domain AMK58_10360 PF00237 Ribosomal protein L22p/L17e AMK58_10365 PF00203 Ribosomal protein S19 AMK58_10370 PF00181 Ribosomal Proteins L2, RNA binding domain AMK58_10370 PF03947 Ribosomal Proteins L2, C-terminal domain AMK58_10375 PF00276 Ribosomal protein L23 AMK58_10380 PF00573 Ribosomal protein L4/L1 family AMK58_10385 PF00297 Ribosomal protein L3 AMK58_10390 PF00338 Ribosomal protein S10p/S20e AMK58_10395 PF00009 Elongation factor Tu GTP binding domain AMK58_10395 PF03144 Elongation factor Tu domain 2 AMK58_10395 PF03143 Elongation factor Tu C-terminal domain AMK58_10400 PF03764 Elongation factor G, domain IV AMK58_10400 PF00009 Elongation factor Tu GTP binding domain AMK58_10400 PF03144 Elongation factor Tu domain 2 AMK58_10400 PF00679 Elongation factor G C-terminus AMK58_10400 PF14492 Elongation Factor G, domain II AMK58_10405 PF00177 Ribosomal protein S7p/S5e AMK58_10410 PF00164 Ribosomal protein S12/S23 AMK58_10415 PF01965 DJ-1/PfpI family AMK58_10420 PF04998 RNA polymerase Rpb1, domain 5 AMK58_10420 PF04997 RNA polymerase Rpb1, domain 1 AMK58_10420 PF00623 RNA polymerase Rpb1, domain 2 AMK58_10420 PF04983 RNA polymerase Rpb1, domain 3 AMK58_10420 PF05000 RNA polymerase Rpb1, domain 4 AMK58_10425 PF00562 RNA polymerase Rpb2, domain 6 AMK58_10425 PF04563 RNA polymerase beta subunit AMK58_10425 PF10385 RNA polymerase beta subunit external 1 domain AMK58_10425 PF04565 RNA polymerase Rpb2, domain 3 AMK58_10425 PF04560 RNA polymerase Rpb2, domain 7 AMK58_10425 PF04561 RNA polymerase Rpb2, domain 2 AMK58_10430 PF00542 Ribosomal protein L7/L12 C-terminal domain AMK58_10430 PF16320 Ribosomal protein L7/L12 dimerisation domain AMK58_10435 PF00466 Ribosomal protein L10 AMK58_10440 PF00687 Ribosomal protein L1p/L10e family AMK58_10445 PF00298 Ribosomal protein L11, RNA binding domain AMK58_10445 PF03946 Ribosomal protein L11, N-terminal domain AMK58_10450 PF02357 Transcription termination factor nusG AMK58_10450 PF00467 KOW motif AMK58_10465 PF00009 Elongation factor Tu GTP binding domain AMK58_10465 PF03143 Elongation factor Tu C-terminal domain AMK58_10465 PF03144 Elongation factor Tu domain 2 AMK58_10480 PF00588 SpoU rRNA Methylase family AMK58_10480 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMK58_10515 PF13458 Periplasmic binding protein AMK58_10525 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_10525 PF00005 ABC transporter AMK58_10530 PF00005 ABC transporter AMK58_10540 PF03633 Glycosyl hydrolase family 65, C-terminal domain AMK58_10540 PF03632 Glycosyl hydrolase family 65 central catalytic domain AMK58_10540 PF02358 Trehalose-phosphatase AMK58_10540 PF03636 Glycosyl hydrolase family 65, N-terminal domain AMK58_10545 PF01979 Amidohydrolase family AMK58_10555 PF00480 ROK family AMK58_10570 PF07687 Peptidase dimerisation domain AMK58_10570 PF01546 Peptidase family M20/M25/M40 AMK58_10575 PF00005 ABC transporter AMK58_10580 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_10580 PF00005 ABC transporter AMK58_10590 PF02653 Branched-chain amino acid transport system / permease component AMK58_10610 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMK58_10610 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMK58_10620 PF00005 ABC transporter AMK58_10630 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_10635 PF00440 Bacterial regulatory proteins, tetR family AMK58_10635 PF17926 Tetracyclin repressor-like, C-terminal domain AMK58_10645 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_10665 PF00501 AMP-binding enzyme AMK58_10665 PF16177 Acetyl-coenzyme A synthetase N-terminus AMK58_10665 PF13193 AMP-binding enzyme C-terminal domain AMK58_10670 PF00005 ABC transporter AMK58_10690 PF03462 PCRF domain AMK58_10690 PF00472 RF-1 domain AMK58_10695 PF03062 MBOAT, membrane-bound O-acyltransferase family AMK58_10705 PF00912 Transglycosylase AMK58_10705 PF17092 Penicillin-binding protein OB-like domain AMK58_10705 PF00905 Penicillin binding protein transpeptidase domain AMK58_10710 PF01520 N-acetylmuramoyl-L-alanine amidase AMK58_10710 PF11741 AMIN domain AMK58_10715 PF12111 Polyribonucleotide phosphorylase C terminal AMK58_10715 PF00575 S1 RNA binding domain AMK58_10715 PF10150 Ribonuclease E/G family AMK58_10720 PF03449 Transcription elongation factor, N-terminal AMK58_10720 PF01272 Transcription elongation factor, GreA/GreB, C-term AMK58_10750 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMK58_10755 PF04452 RNA methyltransferase AMK58_10760 PF01040 UbiA prenyltransferase family AMK58_10780 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AMK58_10795 PF01523 Putative modulator of DNA gyrase AMK58_10805 PF00781 Diacylglycerol kinase catalytic domain AMK58_10815 PF00534 Glycosyl transferases group 1 AMK58_10815 PF13439 Glycosyltransferase Family 4 AMK58_10825 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMK58_10830 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMK58_10840 PF01810 LysE type translocator AMK58_10865 PF02515 CoA-transferase family III AMK58_10875 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMK58_10900 PF01814 Hemerythrin HHE cation binding domain AMK58_10905 PF02867 Ribonucleotide reductase, barrel domain AMK58_10905 PF08471 Class II vitamin B12-dependent ribonucleotide reductase AMK58_10930 PF03330 Lytic transglycolase AMK58_10930 PF05036 Sporulation related domain AMK58_10935 PF00106 short chain dehydrogenase AMK58_10940 PF01575 MaoC like domain AMK58_10945 PF01687 Riboflavin kinase AMK58_10945 PF06574 FAD synthetase AMK58_10950 PF00156 Phosphoribosyl transferase domain AMK58_10955 PF00133 tRNA synthetases class I (I, L, M and V) AMK58_10955 PF08264 Anticodon-binding domain of tRNA AMK58_10960 PF01252 Signal peptidase (SPase) II AMK58_10970 PF05193 Peptidase M16 inactive domain AMK58_10970 PF00675 Insulinase (Peptidase family M16) AMK58_10975 PF05193 Peptidase M16 inactive domain AMK58_10985 PF00342 Phosphoglucose isomerase AMK58_11005 PF01119 DNA mismatch repair protein, C-terminal domain AMK58_11005 PF08676 MutL C terminal dimerisation domain AMK58_11025 PF00474 Sodium:solute symporter family AMK58_11030 PF00478 IMP dehydrogenase / GMP reductase domain AMK58_11030 PF00571 CBS domain AMK58_11040 PF01979 Amidohydrolase family AMK58_11055 PF00005 ABC transporter AMK58_11065 PF09084 NMT1/THI5 like AMK58_11070 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_11075 PF00884 Sulfatase AMK58_11080 PF03328 HpcH/HpaI aldolase/citrate lyase family AMK58_11090 PF00561 alpha/beta hydrolase fold AMK58_11095 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMK58_11100 PF07702 UTRA domain AMK58_11100 PF00392 Bacterial regulatory proteins, gntR family AMK58_11105 PF00248 Aldo/keto reductase family AMK58_11125 PF01593 Flavin containing amine oxidoreductase AMK58_11130 PF00109 Beta-ketoacyl synthase, N-terminal domain AMK58_11130 PF02801 Beta-ketoacyl synthase, C-terminal domain AMK58_11145 PF02801 Beta-ketoacyl synthase, C-terminal domain AMK58_11145 PF00109 Beta-ketoacyl synthase, N-terminal domain AMK58_11170 PF07977 FabA-like domain AMK58_11180 PF00550 Phosphopantetheine attachment site AMK58_11185 PF00550 Phosphopantetheine attachment site AMK58_11215 PF00440 Bacterial regulatory proteins, tetR family AMK58_11220 PF09827 CRISPR associated protein Cas2 AMK58_11225 PF01867 CRISPR associated protein Cas1 AMK58_11245 PF09704 CRISPR-associated protein (Cas_Cas5) AMK58_11255 PF00144 Beta-lactamase AMK58_11260 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_11265 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMK58_11270 PF00128 Alpha amylase, catalytic domain AMK58_11270 PF16657 Maltogenic Amylase, C-terminal domain AMK58_11285 PF00849 RNA pseudouridylate synthase AMK58_11285 PF01479 S4 domain AMK58_11290 PF07311 Dodecin AMK58_11295 PF14437 MafB19-like deaminase AMK58_11305 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMK58_11305 PF02843 Phosphoribosylglycinamide synthetase, C domain AMK58_11305 PF02844 Phosphoribosylglycinamide synthetase, N domain AMK58_11310 PF13742 OB-fold nucleic acid binding domain AMK58_11310 PF02601 Exonuclease VII, large subunit AMK58_11320 PF01979 Amidohydrolase family AMK58_11325 PF03129 Anticodon binding domain AMK58_11325 PF13393 Histidyl-tRNA synthetase AMK58_11345 PF00210 Ferritin-like domain AMK58_11365 PF02464 Competence-damaged protein AMK58_11365 PF00994 Probable molybdopterin binding domain AMK58_11370 PF17746 SfsA N-terminal OB domain AMK58_11370 PF03749 Sugar fermentation stimulation protein RE domain AMK58_11375 PF00557 Metallopeptidase family M24 AMK58_11380 PF04002 RadC-like JAB domain AMK58_11390 PF03707 Bacterial signalling protein N terminal repeat AMK58_11390 PF00990 Diguanylate cyclase, GGDEF domain AMK58_11390 PF00563 EAL domain AMK58_11395 PF00206 Lyase AMK58_11395 PF10397 Adenylosuccinate lyase C-terminus AMK58_11410 PF01259 SAICAR synthetase AMK58_11415 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AMK58_11420 PF00730 HhH-GPD superfamily base excision DNA repair protein AMK58_11420 PF12833 Helix-turn-helix domain AMK58_11420 PF06029 AlkA N-terminal domain AMK58_11420 PF02805 Metal binding domain of Ada AMK58_11425 PF03473 MOSC domain AMK58_11425 PF03475 3-alpha domain AMK58_11435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_11435 PF03466 LysR substrate binding domain AMK58_11445 PF00586 AIR synthase related protein, N-terminal domain AMK58_11445 PF02769 AIR synthase related protein, C-terminal domain AMK58_11445 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMK58_11455 PF00462 Glutaredoxin AMK58_11465 PF00892 EamA-like transporter family AMK58_11475 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMK58_11480 PF00163 Ribosomal protein S4/S9 N-terminal domain AMK58_11480 PF01479 S4 domain AMK58_11495 PF04397 LytTr DNA-binding domain AMK58_11505 PF08502 LeuA allosteric (dimerisation) domain AMK58_11505 PF00682 HMGL-like AMK58_11515 PF00512 His Kinase A (phospho-acceptor) domain AMK58_11515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_11525 PF01757 Acyltransferase family AMK58_11530 PF09190 DALR domain AMK58_11530 PF01406 tRNA synthetases class I (C) catalytic domain AMK58_11535 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMK58_11540 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_11540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_11540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_11550 PF02540 NAD synthase AMK58_11550 PF00795 Carbon-nitrogen hydrolase AMK58_11555 PF00355 Rieske [2Fe-2S] domain AMK58_11570 PF00144 Beta-lactamase AMK58_11580 PF00535 Glycosyl transferase family 2 AMK58_11585 PF00672 HAMP domain AMK58_11585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_11600 PF02653 Branched-chain amino acid transport system / permease component AMK58_11605 PF06508 Queuosine biosynthesis protein QueC AMK58_11625 PF00005 ABC transporter AMK58_11625 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_11630 PF00005 ABC transporter AMK58_11645 PF00829 Ribosomal prokaryotic L21 protein AMK58_11650 PF01016 Ribosomal L27 protein AMK58_11655 PF01926 50S ribosome-binding GTPase AMK58_11655 PF01018 GTP1/OBG AMK58_11660 PF00696 Amino acid kinase family AMK58_11660 PF01472 PUA domain AMK58_11665 PF13419 Haloacid dehalogenase-like hydrolase AMK58_11680 PF01925 Sulfite exporter TauE/SafE AMK58_11685 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_11685 PF00034 Cytochrome c AMK58_11685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_11690 PF00171 Aldehyde dehydrogenase family AMK58_11695 PF01467 Cytidylyltransferase-like AMK58_11705 PF02590 Predicted SPOUT methyltransferase AMK58_11710 PF01676 Metalloenzyme superfamily AMK58_11710 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AMK58_11720 PF03572 Peptidase family S41 AMK58_11720 PF13180 PDZ domain AMK58_11730 PF00293 NUDIX domain AMK58_11740 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMK58_11745 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMK58_11745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMK58_11750 PF00231 ATP synthase AMK58_11755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMK58_11755 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMK58_11755 PF00306 ATP synthase alpha/beta chain, C terminal domain AMK58_11760 PF00213 ATP synthase delta (OSCP) subunit AMK58_11775 PF18074 Primosomal protein N C-terminal domain AMK58_11775 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMK58_11775 PF17764 3′ DNA-binding domain (3′BD) AMK58_11775 PF00270 DEAD/DEAH box helicase AMK58_11780 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMK58_11790 PF02899 Phage integrase, N-terminal SAM-like domain AMK58_11790 PF00589 Phage integrase family AMK58_11795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMK58_11795 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_11805 PF00561 alpha/beta hydrolase fold AMK58_11815 PF01467 Cytidylyltransferase-like AMK58_11815 PF00294 pfkB family carbohydrate kinase AMK58_11825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_11825 PF00512 His Kinase A (phospho-acceptor) domain AMK58_11835 PF13649 Methyltransferase domain AMK58_11855 PF13649 Methyltransferase domain AMK58_11860 PF00162 Phosphoglycerate kinase AMK58_11865 PF02132 RecR protein AMK58_11865 PF13662 Toprim domain AMK58_11870 PF02575 YbaB/EbfC DNA-binding family AMK58_11875 PF12170 DNA polymerase III tau subunit V interacting with alpha AMK58_11875 PF12169 DNA polymerase III subunits gamma and tau domain III AMK58_11875 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMK58_11880 PF00034 Cytochrome c AMK58_11885 PF02348 Cytidylyltransferase AMK58_11890 PF00800 Prephenate dehydratase AMK58_11890 PF01842 ACT domain AMK58_11895 PF09297 NADH pyrophosphatase zinc ribbon domain AMK58_11895 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMK58_11895 PF00293 NUDIX domain AMK58_11900 PF00459 Inositol monophosphatase family AMK58_11910 PF00230 Major intrinsic protein AMK58_11915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_11925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_11930 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_11935 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_11935 PF12911 N-terminal TM domain of oligopeptide transport permease C AMK58_11940 PF00005 ABC transporter AMK58_11940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_11950 PF00849 RNA pseudouridylate synthase AMK58_11955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_11975 PF14842 FliG N-terminal domain AMK58_11975 PF14841 FliG middle domain AMK58_11975 PF01706 FliG C-terminal domain AMK58_11980 PF02789 Cytosol aminopeptidase family, N-terminal domain AMK58_11980 PF00883 Cytosol aminopeptidase family, catalytic domain AMK58_11990 PF16868 NMT1-like family AMK58_12010 PF14579 Helix-hairpin-helix motif AMK58_12010 PF02811 PHP domain AMK58_12010 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMK58_12010 PF01336 OB-fold nucleic acid binding domain AMK58_12010 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMK58_12040 PF04055 Radical SAM superfamily AMK58_12045 PF02798 Glutathione S-transferase, N-terminal domain AMK58_12045 PF00043 Glutathione S-transferase, C-terminal domain AMK58_12055 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_12055 PF12911 N-terminal TM domain of oligopeptide transport permease C AMK58_12060 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_12065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_12070 PF00378 Enoyl-CoA hydratase/isomerase AMK58_12075 PF07690 Major Facilitator Superfamily AMK58_12085 PF03466 LysR substrate binding domain AMK58_12085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_12100 PF00563 EAL domain AMK58_12100 PF00990 Diguanylate cyclase, GGDEF domain AMK58_12100 PF08447 PAS fold AMK58_12100 PF08448 PAS fold AMK58_12105 PF02798 Glutathione S-transferase, N-terminal domain AMK58_12110 PF00202 Aminotransferase class-III AMK58_12120 PF00155 Aminotransferase class I and II AMK58_12150 PF02646 RmuC family AMK58_12155 PF00313 'Cold-shock' DNA-binding domain AMK58_12165 PF01327 Polypeptide deformylase AMK58_12170 PF00551 Formyl transferase AMK58_12170 PF02911 Formyl transferase, C-terminal domain AMK58_12175 PF01416 tRNA pseudouridine synthase AMK58_12180 PF02653 Branched-chain amino acid transport system / permease component AMK58_12185 PF01878 EVE domain AMK58_12195 PF08279 HTH domain AMK58_12195 PF13280 WYL domain AMK58_12200 PF00330 Aconitase family (aconitate hydratase) AMK58_12215 PF01245 Ribosomal protein L19 AMK58_12220 PF01746 tRNA (Guanine-1)-methyltransferase AMK58_12225 PF01782 RimM N-terminal domain AMK58_12225 PF05239 PRC-barrel domain AMK58_12230 PF00886 Ribosomal protein S16 AMK58_12235 PF02881 SRP54-type protein, helical bundle domain AMK58_12235 PF02978 Signal peptide binding domain AMK58_12235 PF00448 SRP54-type protein, GTPase domain AMK58_12260 PF03707 Bacterial signalling protein N terminal repeat AMK58_12260 PF00990 Diguanylate cyclase, GGDEF domain AMK58_12260 PF00563 EAL domain AMK58_12270 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMK58_12270 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_12270 PF14602 Hexapeptide repeat of succinyl-transferase AMK58_12275 PF01546 Peptidase family M20/M25/M40 AMK58_12275 PF07687 Peptidase dimerisation domain AMK58_12285 PF02277 Phosphoribosyltransferase AMK58_12290 PF02654 Cobalamin-5-phosphate synthase AMK58_12305 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_12305 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMK58_12315 PF00005 ABC transporter AMK58_12320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_12320 PF00512 His Kinase A (phospho-acceptor) domain AMK58_12325 PF00072 Response regulator receiver domain AMK58_12325 PF02954 Bacterial regulatory protein, Fis family AMK58_12340 PF13614 AAA domain AMK58_12340 PF02706 Chain length determinant protein AMK58_12340 PF13807 G-rich domain on putative tyrosine kinase AMK58_12350 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMK58_12350 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMK58_12350 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMK58_12355 PF01370 NAD dependent epimerase/dehydratase family AMK58_12360 PF01370 NAD dependent epimerase/dehydratase family AMK58_12405 PF00535 Glycosyl transferase family 2 AMK58_12415 PF00468 Ribosomal protein L34 AMK58_12420 PF00825 Ribonuclease P AMK58_12425 PF02096 60Kd inner membrane protein AMK58_12425 PF14849 YidC periplasmic domain AMK58_12430 PF01926 50S ribosome-binding GTPase AMK58_12445 PF00696 Amino acid kinase family AMK58_12455 PF01544 CorA-like Mg2+ transporter protein AMK58_12470 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMK58_12480 PF01274 Malate synthase AMK58_12485 PF02899 Phage integrase, N-terminal SAM-like domain AMK58_12485 PF00589 Phage integrase family AMK58_12495 PF01202 Shikimate kinase AMK58_12500 PF01761 3-dehydroquinate synthase AMK58_12505 PF00571 CBS domain AMK58_12520 PF01722 BolA-like protein AMK58_12525 PF00226 DnaJ domain AMK58_12530 PF12556 Cobaltochelatase CobS subunit N terminal AMK58_12530 PF08406 CbbQ/NirQ/NorQ C-terminal AMK58_12530 PF07728 AAA domain (dynein-related subfamily) AMK58_12540 PF11775 Cobalamin biosynthesis protein CobT VWA domain AMK58_12540 PF06213 Cobalamin biosynthesis protein CobT AMK58_12555 PF05726 Pirin C-terminal cupin domain AMK58_12555 PF02678 Pirin AMK58_12560 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_12570 PF00990 Diguanylate cyclase, GGDEF domain AMK58_12570 PF00072 Response regulator receiver domain AMK58_12575 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMK58_12580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMK58_12590 PF01266 FAD dependent oxidoreductase AMK58_12595 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMK58_12605 PF00216 Bacterial DNA-binding protein AMK58_12615 PF00575 S1 RNA binding domain AMK58_12620 PF02224 Cytidylate kinase AMK58_12625 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMK58_12650 PF05726 Pirin C-terminal cupin domain AMK58_12650 PF02678 Pirin AMK58_12655 PF03454 MoeA C-terminal region (domain IV) AMK58_12655 PF03453 MoeA N-terminal region (domain I and II) AMK58_12655 PF00994 Probable molybdopterin binding domain AMK58_12665 PF00990 Diguanylate cyclase, GGDEF domain AMK58_12665 PF00072 Response regulator receiver domain AMK58_12670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_12670 PF00672 HAMP domain AMK58_12670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMK58_12670 PF00072 Response regulator receiver domain AMK58_12670 PF01627 Hpt domain AMK58_12670 PF00512 His Kinase A (phospho-acceptor) domain AMK58_12675 PF00072 Response regulator receiver domain AMK58_12675 PF17149 Periplasmic sensor domain found in signal transduction proteins AMK58_12675 PF01627 Hpt domain AMK58_12675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_12675 PF00672 HAMP domain AMK58_12675 PF00512 His Kinase A (phospho-acceptor) domain AMK58_12680 PF00535 Glycosyl transferase family 2 AMK58_12690 PF00011 Hsp20/alpha crystallin family AMK58_12715 PF01757 Acyltransferase family AMK58_12720 PF00694 Aconitase C-terminal domain AMK58_12720 PF00330 Aconitase family (aconitate hydratase) AMK58_12745 PF01008 Initiation factor 2 subunit family AMK58_12750 PF12282 Signal transduction histidine kinase AMK58_12750 PF07568 Histidine kinase AMK58_12750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_12765 PF00474 Sodium:solute symporter family AMK58_12770 PF04341 Protein of unknown function, DUF485 AMK58_12785 PF02659 Putative manganese efflux pump AMK58_12790 PF00795 Carbon-nitrogen hydrolase AMK58_12795 PF00462 Glutaredoxin AMK58_12800 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMK58_12800 PF14572 Phosphoribosyl synthetase-associated domain AMK58_12805 PF01313 Bacterial export proteins, family 3 AMK58_12830 PF03186 CobD/Cbib protein AMK58_12835 PF00270 DEAD/DEAH box helicase AMK58_12835 PF00271 Helicase conserved C-terminal domain AMK58_12840 PF01741 Large-conductance mechanosensitive channel, MscL AMK58_12845 PF01043 SecA preprotein cross-linking domain AMK58_12845 PF07516 SecA Wing and Scaffold domain AMK58_12845 PF07517 SecA DEAD-like domain AMK58_12845 PF02810 SEC-C motif AMK58_12855 PF01960 ArgJ family AMK58_12865 PF00293 NUDIX domain AMK58_12870 PF09382 RQC domain AMK58_12870 PF16124 RecQ zinc-binding AMK58_12870 PF00570 HRDC domain AMK58_12870 PF00271 Helicase conserved C-terminal domain AMK58_12870 PF00270 DEAD/DEAH box helicase AMK58_12895 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_12900 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMK58_12905 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_12910 PF00691 OmpA family AMK58_12935 PF00296 Luciferase-like monooxygenase AMK58_12940 PF01641 SelR domain AMK58_12945 PF01738 Dienelactone hydrolase family AMK58_12950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMK58_12950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMK58_12950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMK58_12950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMK58_12955 PF00313 'Cold-shock' DNA-binding domain AMK58_12990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_12990 PF00005 ABC transporter AMK58_13005 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_13010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_13030 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AMK58_13040 PF00563 EAL domain AMK58_13040 PF03707 Bacterial signalling protein N terminal repeat AMK58_13040 PF00990 Diguanylate cyclase, GGDEF domain AMK58_13070 PF01569 PAP2 superfamily AMK58_13080 PF11849 Domain of unknown function (DUF3369) AMK58_13095 PF04024 PspC domain AMK58_13100 PF06667 Phage shock protein B AMK58_13105 PF04012 PspA/IM30 family AMK58_13110 PF02954 Bacterial regulatory protein, Fis family AMK58_13110 PF00158 Sigma-54 interaction domain AMK58_13120 PF00912 Transglycosylase AMK58_13120 PF00905 Penicillin binding protein transpeptidase domain AMK58_13125 PF01593 Flavin containing amine oxidoreductase AMK58_13135 PF03264 NapC/NirT cytochrome c family, N-terminal region AMK58_13140 PF00034 Cytochrome c AMK58_13140 PF03150 Di-haem cytochrome c peroxidase AMK58_13145 PF06628 Catalase-related immune-responsive AMK58_13145 PF00199 Catalase AMK58_13150 PF00118 TCP-1/cpn60 chaperonin family AMK58_13155 PF00166 Chaperonin 10 Kd subunit AMK58_13160 PF06233 Usg-like family AMK58_13165 PF00959 Phage lysozyme AMK58_13170 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_13175 PF02628 Cytochrome oxidase assembly protein AMK58_13205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_13205 PF00005 ABC transporter AMK58_13210 PF00924 Mechanosensitive ion channel AMK58_13215 PF11849 Domain of unknown function (DUF3369) AMK58_13220 PF00156 Phosphoribosyl transferase domain AMK58_13230 PF00175 Oxidoreductase NAD-binding domain AMK58_13230 PF00970 Oxidoreductase FAD-binding domain AMK58_13235 PF01381 Helix-turn-helix AMK58_13235 PF09856 Predicted transcriptional regulator (DUF2083) AMK58_13235 PF06114 IrrE N-terminal-like domain AMK58_13240 PF00463 Isocitrate lyase family AMK58_13245 PF01965 DJ-1/PfpI family AMK58_13250 PF00512 His Kinase A (phospho-acceptor) domain AMK58_13250 PF00989 PAS fold AMK58_13250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_13255 PF00174 Oxidoreductase molybdopterin binding domain AMK58_13260 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AMK58_13260 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMK58_13260 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMK58_13265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_13285 PF05974 Domain of unknown function (DUF892) AMK58_13300 PF00156 Phosphoribosyl transferase domain AMK58_13310 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_13315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_13320 PF02633 Creatinine amidohydrolase AMK58_13365 PF00589 Phage integrase family AMK58_13380 PF13817 IS66 C-terminal element AMK58_13380 PF03050 Transposase IS66 family AMK58_13380 PF13007 Transposase C of IS166 homeodomain AMK58_13380 PF13005 zinc-finger binding domain of transposase IS66 AMK58_13385 PF05717 IS66 Orf2 like protein AMK58_13390 PF00872 Transposase, Mutator family AMK58_13415 PF02796 Helix-turn-helix domain of resolvase AMK58_13415 PF00665 Integrase core domain AMK58_13430 PF00665 Integrase core domain AMK58_13435 PF01695 IstB-like ATP binding protein AMK58_13440 PF01695 IstB-like ATP binding protein AMK58_13485 PF13007 Transposase C of IS166 homeodomain AMK58_13485 PF13817 IS66 C-terminal element AMK58_13485 PF03050 Transposase IS66 family AMK58_13485 PF13005 zinc-finger binding domain of transposase IS66 AMK58_13490 PF03050 Transposase IS66 family AMK58_13550 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_13555 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMK58_13555 PF00775 Dioxygenase AMK58_13645 PF01078 Magnesium chelatase, subunit ChlI AMK58_13645 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMK58_13660 PF17854 FtsK alpha domain AMK58_13660 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMK58_13660 PF01580 FtsK/SpoIIIE family AMK58_13670 PF00543 Nitrogen regulatory protein P-II AMK58_13675 PF01494 FAD binding domain AMK58_13680 PF02834 LigT like Phosphoesterase AMK58_13685 PF00248 Aldo/keto reductase family AMK58_13690 PF08495 FIST N domain AMK58_13690 PF10442 FIST C domain AMK58_13695 PF13472 GDSL-like Lipase/Acylhydrolase family AMK58_13700 PF00005 ABC transporter AMK58_13705 PF02687 FtsX-like permease family AMK58_13705 PF00005 ABC transporter AMK58_13705 PF12704 MacB-like periplasmic core domain AMK58_13710 PF00990 Diguanylate cyclase, GGDEF domain AMK58_13710 PF17151 Periplasmic sensor domain AMK58_13715 PF00684 DnaJ central domain AMK58_13715 PF01556 DnaJ C terminal domain AMK58_13715 PF00226 DnaJ domain AMK58_13720 PF00012 Hsp70 protein AMK58_13740 PF08447 PAS fold AMK58_13740 PF13426 PAS domain AMK58_13740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_13745 PF00072 Response regulator receiver domain AMK58_13750 PF01025 GrpE AMK58_13755 PF01628 HrcA protein C terminal domain AMK58_13760 PF01138 3' exoribonuclease family, domain 1 AMK58_13760 PF03725 3' exoribonuclease family, domain 2 AMK58_13765 PF01725 Ham1 family AMK58_13770 PF04055 Radical SAM superfamily AMK58_13770 PF06969 HemN C-terminal domain AMK58_13780 PF00186 Dihydrofolate reductase AMK58_13795 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMK58_13795 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMK58_13800 PF13369 Transglutaminase-like superfamily AMK58_13805 PF02021 Uncharacterised protein family UPF0102 AMK58_13810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_13825 PF01053 Cys/Met metabolism PLP-dependent enzyme AMK58_13830 PF01740 STAS domain AMK58_13855 PF08335 GlnD PII-uridylyltransferase AMK58_13855 PF01909 Nucleotidyltransferase domain AMK58_13855 PF01966 HD domain AMK58_13875 PF02261 Aspartate decarboxylase AMK58_13895 PF01209 ubiE/COQ5 methyltransferase family AMK58_13900 PF03975 CheD chemotactic sensory transduction AMK58_13905 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AMK58_13915 PF01648 4'-phosphopantetheinyl transferase superfamily AMK58_13920 PF01259 SAICAR synthetase AMK58_13925 PF01842 ACT domain AMK58_13925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_13925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMK58_13930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMK58_13935 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMK58_13935 PF13244 Domain of unknown function (DUF4040) AMK58_13935 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AMK58_13935 PF00361 Proton-conducting membrane transporter AMK58_13940 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMK58_13945 PF00361 Proton-conducting membrane transporter AMK58_13950 PF01899 Na+/H+ ion antiporter subunit AMK58_13955 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AMK58_13960 PF03334 Na+/H+ antiporter subunit AMK58_13985 PF16363 GDP-mannose 4,6 dehydratase AMK58_13990 PF00664 ABC transporter transmembrane region AMK58_13990 PF00005 ABC transporter AMK58_14000 PF00005 ABC transporter AMK58_14035 PF13458 Periplasmic binding protein AMK58_14040 PF00529 HlyD membrane-fusion protein of T1SS AMK58_14045 PF00005 ABC transporter AMK58_14045 PF03412 Peptidase C39 family AMK58_14045 PF00664 ABC transporter transmembrane region AMK58_14060 PF00005 ABC transporter AMK58_14060 PF17912 MalK OB fold domain AMK58_14065 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_14070 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_14080 PF00171 Aldehyde dehydrogenase family AMK58_14090 PF00378 Enoyl-CoA hydratase/isomerase AMK58_14100 PF02515 CoA-transferase family III AMK58_14105 PF00106 short chain dehydrogenase AMK58_14110 PF00356 Bacterial regulatory proteins, lacI family AMK58_14115 PF07715 TonB-dependent Receptor Plug Domain AMK58_14115 PF00593 TonB dependent receptor AMK58_14140 PF13722 5TM C-terminal transporter carbon starvation CstA AMK58_14140 PF02554 Carbon starvation protein CstA AMK58_14145 PF04328 Selenoprotein, putative AMK58_14155 PF13823 Alcohol dehydrogenase GroES-associated AMK58_14155 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_14155 PF00107 Zinc-binding dehydrogenase AMK58_14160 PF07729 FCD domain AMK58_14160 PF00392 Bacterial regulatory proteins, gntR family AMK58_14170 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_14180 PF00005 ABC transporter AMK58_14205 PF00795 Carbon-nitrogen hydrolase AMK58_14205 PF02540 NAD synthase AMK58_14210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_14210 PF00672 HAMP domain AMK58_14215 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMK58_14220 PF00135 Carboxylesterase family AMK58_14225 PF00005 ABC transporter AMK58_14235 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_14250 PF07690 Major Facilitator Superfamily AMK58_14255 PF03466 LysR substrate binding domain AMK58_14255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_14265 PF00593 TonB dependent receptor AMK58_14265 PF07715 TonB-dependent Receptor Plug Domain AMK58_14270 PF00005 ABC transporter AMK58_14280 PF01032 FecCD transport family AMK58_14285 PF00664 ABC transporter transmembrane region AMK58_14285 PF00005 ABC transporter AMK58_14305 PF00986 DNA gyrase B subunit, carboxyl terminus AMK58_14305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_14305 PF01751 Toprim domain AMK58_14305 PF00204 DNA gyrase B AMK58_14310 PF02463 RecF/RecN/SMC N terminal domain AMK58_14315 PF02768 DNA polymerase III beta subunit, C-terminal domain AMK58_14315 PF02767 DNA polymerase III beta subunit, central domain AMK58_14315 PF00712 DNA polymerase III beta subunit, N-terminal domain AMK58_14335 PF07670 Nucleoside recognition AMK58_14335 PF07664 Ferrous iron transport protein B C terminus AMK58_14335 PF02421 Ferrous iron transport protein B AMK58_14345 PF03707 Bacterial signalling protein N terminal repeat AMK58_14345 PF00990 Diguanylate cyclase, GGDEF domain AMK58_14345 PF00563 EAL domain AMK58_14350 PF00561 alpha/beta hydrolase fold AMK58_14355 PF00196 Bacterial regulatory proteins, luxR family AMK58_14355 PF00072 Response regulator receiver domain AMK58_14360 PF13493 Domain of unknown function (DUF4118) AMK58_14360 PF13426 PAS domain AMK58_14360 PF08447 PAS fold AMK58_14360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_14360 PF00512 His Kinase A (phospho-acceptor) domain AMK58_14360 PF00989 PAS fold AMK58_14365 PF00857 Isochorismatase family AMK58_14375 PF07969 Amidohydrolase family AMK58_14420 PF12706 Beta-lactamase superfamily domain AMK58_14425 PF13417 Glutathione S-transferase, N-terminal domain AMK58_14430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_14430 PF03466 LysR substrate binding domain AMK58_14435 PF13378 Enolase C-terminal domain-like AMK58_14445 PF00512 His Kinase A (phospho-acceptor) domain AMK58_14445 PF17149 Periplasmic sensor domain found in signal transduction proteins AMK58_14445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_14445 PF01627 Hpt domain AMK58_14445 PF00072 Response regulator receiver domain AMK58_14445 PF00672 HAMP domain AMK58_14450 PF00579 tRNA synthetases class I (W and Y) AMK58_14455 PF04055 Radical SAM superfamily AMK58_14470 PF00535 Glycosyl transferase family 2 AMK58_14475 PF00534 Glycosyl transferases group 1 AMK58_14475 PF13439 Glycosyltransferase Family 4 AMK58_14515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_14515 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_14515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_14520 PF03328 HpcH/HpaI aldolase/citrate lyase family AMK58_14530 PF02515 CoA-transferase family III AMK58_14540 PF03466 LysR substrate binding domain AMK58_14540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_14545 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_14545 PF01799 [2Fe-2S] binding domain AMK58_14550 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMK58_14550 PF00941 FAD binding domain in molybdopterin dehydrogenase AMK58_14555 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_14555 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_14560 PF01370 NAD dependent epimerase/dehydratase family AMK58_14585 PF13243 Squalene-hopene cyclase C-terminal domain AMK58_14585 PF13249 Squalene-hopene cyclase N-terminal domain AMK58_14595 PF01048 Phosphorylase superfamily AMK58_14610 PF00072 Response regulator receiver domain AMK58_14620 PF02702 Osmosensitive K+ channel His kinase sensor domain AMK58_14620 PF00512 His Kinase A (phospho-acceptor) domain AMK58_14620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_14620 PF13493 Domain of unknown function (DUF4118) AMK58_14620 PF13492 GAF domain AMK58_14625 PF06055 Exopolysaccharide synthesis, ExoD AMK58_14630 PF01595 Cyclin M transmembrane N-terminal domain AMK58_14630 PF00571 CBS domain AMK58_14630 PF03471 Transporter associated domain AMK58_14650 PF00072 Response regulator receiver domain AMK58_14650 PF00486 Transcriptional regulatory protein, C terminal AMK58_14655 PF13188 PAS domain AMK58_14655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_14655 PF00512 His Kinase A (phospho-acceptor) domain AMK58_14655 PF00072 Response regulator receiver domain AMK58_14655 PF08448 PAS fold AMK58_14660 PF01098 Cell cycle protein AMK58_14680 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMK58_14680 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMK58_14690 PF00206 Lyase AMK58_14690 PF14698 Argininosuccinate lyase C-terminal AMK58_14695 PF08534 Redoxin AMK58_14705 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMK58_14705 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMK58_14710 PF01012 Electron transfer flavoprotein domain AMK58_14710 PF00766 Electron transfer flavoprotein FAD-binding domain AMK58_14715 PF01012 Electron transfer flavoprotein domain AMK58_14720 PF01923 Cobalamin adenosyltransferase AMK58_14730 PF00232 Glycosyl hydrolase family 1 AMK58_14765 PF02627 Carboxymuconolactone decarboxylase family AMK58_14785 PF01476 LysM domain AMK58_14785 PF03734 L,D-transpeptidase catalytic domain AMK58_14790 PF02653 Branched-chain amino acid transport system / permease component AMK58_14800 PF00005 ABC transporter AMK58_14805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_14805 PF00672 HAMP domain AMK58_14810 PF03739 Lipopolysaccharide export system permease LptF/LptG AMK58_14835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_14835 PF00460 Flagella basal body rod protein AMK58_14835 PF07559 Flagellar basal body protein FlaE AMK58_14855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_14855 PF00512 His Kinase A (phospho-acceptor) domain AMK58_14860 PF02872 5'-nucleotidase, C-terminal domain AMK58_14860 PF00149 Calcineurin-like phosphoesterase AMK58_14865 PF00392 Bacterial regulatory proteins, gntR family AMK58_14865 PF00155 Aminotransferase class I and II AMK58_14870 PF02627 Carboxymuconolactone decarboxylase family AMK58_14875 PF00440 Bacterial regulatory proteins, tetR family AMK58_14885 PF00881 Nitroreductase family AMK58_14890 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_14890 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMK58_14895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_14900 PF01888 CbiD AMK58_14905 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_14915 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_14920 PF02571 Precorrin-6x reductase CbiJ/CobK AMK58_14925 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_14930 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_14935 PF02570 Precorrin-8X methylmutase AMK58_14940 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMK58_14945 PF02514 CobN/Magnesium Chelatase AMK58_14950 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMK58_14950 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMK58_14955 PF00005 ABC transporter AMK58_14955 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_14960 PF00005 ABC transporter AMK58_14970 PF02653 Branched-chain amino acid transport system / permease component AMK58_14980 PF00501 AMP-binding enzyme AMK58_14980 PF13193 AMP-binding enzyme C-terminal domain AMK58_14985 PF00106 short chain dehydrogenase AMK58_14990 PF00043 Glutathione S-transferase, C-terminal domain AMK58_14990 PF02798 Glutathione S-transferase, N-terminal domain AMK58_15015 PF00128 Alpha amylase, catalytic domain AMK58_15020 PF02446 4-alpha-glucanotransferase AMK58_15040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_15040 PF00072 Response regulator receiver domain AMK58_15040 PF00672 HAMP domain AMK58_15040 PF17149 Periplasmic sensor domain found in signal transduction proteins AMK58_15040 PF01627 Hpt domain AMK58_15040 PF00512 His Kinase A (phospho-acceptor) domain AMK58_15060 PF07943 Penicillin-binding protein 5, C-terminal domain AMK58_15060 PF00768 D-alanyl-D-alanine carboxypeptidase AMK58_15080 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_15085 PF08402 TOBE domain AMK58_15085 PF00005 ABC transporter AMK58_15095 PF00999 Sodium/hydrogen exchanger family AMK58_15100 PF04143 Sulphur transport AMK58_15105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_15105 PF03466 LysR substrate binding domain AMK58_15110 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_15110 PF00107 Zinc-binding dehydrogenase AMK58_15115 PF00756 Putative esterase AMK58_15120 PF16868 NMT1-like family AMK58_15140 PF01232 Mannitol dehydrogenase Rossmann domain AMK58_15140 PF08125 Mannitol dehydrogenase C-terminal domain AMK58_15145 PF08666 SAF domain AMK58_15145 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AMK58_15150 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_15160 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_15165 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_15165 PF00107 Zinc-binding dehydrogenase AMK58_15175 PF00873 AcrB/AcrD/AcrF family AMK58_15180 PF00529 HlyD membrane-fusion protein of T1SS AMK58_15180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMK58_15190 PF12833 Helix-turn-helix domain AMK58_15190 PF02311 AraC-like ligand binding domain AMK58_15210 PF02734 DAK2 domain AMK58_15210 PF02733 Dak1 domain AMK58_15215 PF09339 IclR helix-turn-helix domain AMK58_15215 PF01614 Bacterial transcriptional regulator AMK58_15220 PF00701 Dihydrodipicolinate synthetase family AMK58_15240 PF01970 Tripartite tricarboxylate transporter TctA family AMK58_15245 PF00171 Aldehyde dehydrogenase family AMK58_15255 PF02371 Transposase IS116/IS110/IS902 family AMK58_15255 PF01548 Transposase AMK58_15300 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMK58_15300 PF12708 Pectate lyase superfamily protein AMK58_15300 PF13229 Right handed beta helix region AMK58_15350 PF02384 N-6 DNA Methylase AMK58_15405 PF00239 Resolvase, N terminal domain AMK58_15405 PF02796 Helix-turn-helix domain of resolvase AMK58_15445 PF17863 AAA lid domain AMK58_15445 PF07726 ATPase family associated with various cellular activities (AAA) AMK58_15455 PF00293 NUDIX domain AMK58_15465 PF01743 Poly A polymerase head domain AMK58_15465 PF12627 Probable RNA and SrmB- binding site of polymerase A AMK58_15465 PF13735 tRNA nucleotidyltransferase domain 2 putative AMK58_15470 PF01218 Coproporphyrinogen III oxidase AMK58_15475 PF00588 SpoU rRNA Methylase family AMK58_15480 PF00355 Rieske [2Fe-2S] domain AMK58_15480 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMK58_15485 PF00032 Cytochrome b(C-terminal)/b6/petD AMK58_15485 PF00033 Cytochrome b/b6/petB AMK58_15490 PF02167 Cytochrome C1 family AMK58_15490 PF00032 Cytochrome b(C-terminal)/b6/petD AMK58_15490 PF00033 Cytochrome b/b6/petB AMK58_15500 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMK58_15500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_15500 PF00072 Response regulator receiver domain AMK58_15500 PF01627 Hpt domain AMK58_15500 PF00512 His Kinase A (phospho-acceptor) domain AMK58_15500 PF00672 HAMP domain AMK58_15510 PF01022 Bacterial regulatory protein, arsR family AMK58_15515 PF01206 Sulfurtransferase TusA AMK58_15520 PF00850 Histone deacetylase domain AMK58_15525 PF02609 Exonuclease VII small subunit AMK58_15530 PF00348 Polyprenyl synthetase AMK58_15535 PF02779 Transketolase, pyrimidine binding domain AMK58_15535 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMK58_15535 PF02780 Transketolase, C-terminal domain AMK58_15545 PF01479 S4 domain AMK58_15545 PF01728 FtsJ-like methyltransferase AMK58_15555 PF03466 LysR substrate binding domain AMK58_15555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_15570 PF01047 MarR family AMK58_15580 PF05199 GMC oxidoreductase AMK58_15580 PF00732 GMC oxidoreductase AMK58_15585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_15585 PF03466 LysR substrate binding domain AMK58_15595 PF00106 short chain dehydrogenase AMK58_15600 PF00561 alpha/beta hydrolase fold AMK58_15625 PF00561 alpha/beta hydrolase fold AMK58_15630 PF08671 Anti-repressor SinI AMK58_15630 PF01381 Helix-turn-helix AMK58_15640 PF01205 Uncharacterized protein family UPF0029 AMK58_15645 PF02954 Bacterial regulatory protein, Fis family AMK58_15645 PF01590 GAF domain AMK58_15645 PF00158 Sigma-54 interaction domain AMK58_15650 PF01513 ATP-NAD kinase AMK58_15655 PF00676 Dehydrogenase E1 component AMK58_15660 PF02780 Transketolase, C-terminal domain AMK58_15660 PF02779 Transketolase, pyrimidine binding domain AMK58_15665 PF00364 Biotin-requiring enzyme AMK58_15665 PF00561 alpha/beta hydrolase fold AMK58_15675 PF04055 Radical SAM superfamily AMK58_15675 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMK58_15690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_15705 PF07729 FCD domain AMK58_15705 PF00392 Bacterial regulatory proteins, gntR family AMK58_15710 PF01261 Xylose isomerase-like TIM barrel AMK58_15720 PF02803 Thiolase, C-terminal domain AMK58_15720 PF00108 Thiolase, N-terminal domain AMK58_15735 PF01575 MaoC like domain AMK58_15745 PF13458 Periplasmic binding protein AMK58_15750 PF02653 Branched-chain amino acid transport system / permease component AMK58_15755 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_15755 PF00005 ABC transporter AMK58_15760 PF00005 ABC transporter AMK58_15770 PF00501 AMP-binding enzyme AMK58_15770 PF13193 AMP-binding enzyme C-terminal domain AMK58_15780 PF01266 FAD dependent oxidoreductase AMK58_15790 PF00672 HAMP domain AMK58_15790 PF00512 His Kinase A (phospho-acceptor) domain AMK58_15790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_15795 PF00072 Response regulator receiver domain AMK58_15795 PF00486 Transcriptional regulatory protein, C terminal AMK58_15800 PF00072 Response regulator receiver domain AMK58_15800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_15800 PF00672 HAMP domain AMK58_15800 PF17149 Periplasmic sensor domain found in signal transduction proteins AMK58_15800 PF00512 His Kinase A (phospho-acceptor) domain AMK58_15800 PF01627 Hpt domain AMK58_15805 PF00313 'Cold-shock' DNA-binding domain AMK58_15810 PF12802 MarR family AMK58_15815 PF01063 Amino-transferase class IV AMK58_15830 PF00271 Helicase conserved C-terminal domain AMK58_15830 PF02151 UvrB/uvrC motif AMK58_15830 PF17757 UvrB interaction domain AMK58_15830 PF04851 Type III restriction enzyme, res subunit AMK58_15830 PF12344 Ultra-violet resistance protein B AMK58_15845 PF07690 Major Facilitator Superfamily AMK58_15850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_15850 PF00512 His Kinase A (phospho-acceptor) domain AMK58_15855 PF04364 DNA polymerase III chi subunit, HolC AMK58_15860 PF02789 Cytosol aminopeptidase family, N-terminal domain AMK58_15860 PF00883 Cytosol aminopeptidase family, catalytic domain AMK58_15870 PF00639 PPIC-type PPIASE domain AMK58_15870 PF09312 SurA N-terminal domain AMK58_15875 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMK58_15880 PF00512 His Kinase A (phospho-acceptor) domain AMK58_15880 PF00989 PAS fold AMK58_15880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_15890 PF01464 Transglycosylase SLT domain AMK58_15905 PF00398 Ribosomal RNA adenine dimethylase AMK58_15910 PF00625 Guanylate kinase AMK58_15915 PF03755 YicC-like family, N-terminal region AMK58_15915 PF08340 Domain of unknown function (DUF1732) AMK58_15920 PF00106 short chain dehydrogenase AMK58_15925 PF00398 Ribosomal RNA adenine dimethylase AMK58_15930 PF06055 Exopolysaccharide synthesis, ExoD AMK58_15935 PF12848 ABC transporter AMK58_15935 PF00005 ABC transporter AMK58_15940 PF00334 Nucleoside diphosphate kinase AMK58_15950 PF00551 Formyl transferase AMK58_15955 PF02769 AIR synthase related protein, C-terminal domain AMK58_15955 PF00586 AIR synthase related protein, N-terminal domain AMK58_15965 PF01066 CDP-alcohol phosphatidyltransferase AMK58_15970 PF01594 AI-2E family transporter AMK58_15980 PF00106 short chain dehydrogenase AMK58_15985 PF01928 CYTH domain AMK58_15995 PF17941 Polyphosphate kinase C-terminal domain 1 AMK58_15995 PF02503 Polyphosphate kinase middle domain AMK58_15995 PF13089 Polyphosphate kinase N-terminal domain AMK58_15995 PF13090 Polyphosphate kinase C-terminal domain 2 AMK58_16000 PF02541 Ppx/GppA phosphatase family AMK58_16010 PF00570 HRDC domain AMK58_16010 PF01612 3'-5' exonuclease AMK58_16015 PF00152 tRNA synthetases class II (D, K and N) AMK58_16015 PF02938 GAD domain AMK58_16015 PF01336 OB-fold nucleic acid binding domain AMK58_16030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMK58_16030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_16040 PF00989 PAS fold AMK58_16040 PF00512 His Kinase A (phospho-acceptor) domain AMK58_16040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_16045 PF00072 Response regulator receiver domain AMK58_16050 PF00990 Diguanylate cyclase, GGDEF domain AMK58_16050 PF00072 Response regulator receiver domain AMK58_16055 PF00471 Ribosomal protein L33 AMK58_16060 PF03572 Peptidase family S41 AMK58_16060 PF13180 PDZ domain AMK58_16065 PF17876 Cold shock domain AMK58_16065 PF08461 Ribonuclease R winged-helix domain AMK58_16065 PF08206 Ribonuclease B OB domain AMK58_16065 PF00773 RNB domain AMK58_16065 PF00575 S1 RNA binding domain AMK58_16085 PF03461 TRCF domain AMK58_16085 PF02559 CarD-like/TRCF domain AMK58_16085 PF17757 UvrB interaction domain AMK58_16085 PF00270 DEAD/DEAH box helicase AMK58_16085 PF00271 Helicase conserved C-terminal domain AMK58_16115 PF09370 Phosphoenolpyruvate hydrolase-like AMK58_16125 PF09370 Phosphoenolpyruvate hydrolase-like AMK58_16125 PF02954 Bacterial regulatory protein, Fis family AMK58_16125 PF00158 Sigma-54 interaction domain AMK58_16140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMK58_16145 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMK58_16145 PF01266 FAD dependent oxidoreductase AMK58_16150 PF03466 LysR substrate binding domain AMK58_16150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_16155 PF03466 LysR substrate binding domain AMK58_16155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_16160 PF00106 short chain dehydrogenase AMK58_16165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_16165 PF00005 ABC transporter AMK58_16170 PF00005 ABC transporter AMK58_16170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_16180 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_16195 PF13276 HTH-like domain AMK58_16195 PF00665 Integrase core domain AMK58_16200 PF04542 Sigma-70 region 2 AMK58_16200 PF08281 Sigma-70, region 4 AMK58_16225 PF00510 Cytochrome c oxidase subunit III AMK58_16230 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_16235 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMK58_16235 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMK58_16270 PF00037 4Fe-4S binding domain AMK58_16270 PF13247 4Fe-4S dicluster domain AMK58_16290 PF00005 ABC transporter AMK58_16295 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16300 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_16305 PF02615 Malate/L-lactate dehydrogenase AMK58_16310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_16310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMK58_16320 PF07859 alpha/beta hydrolase fold AMK58_16355 PF00924 Mechanosensitive ion channel AMK58_16355 PF12795 Mechanosensitive ion channel porin domain AMK58_16355 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMK58_16365 PF07690 Major Facilitator Superfamily AMK58_16370 PF00255 Glutathione peroxidase AMK58_16380 PF01207 Dihydrouridine synthase (Dus) AMK58_16385 PF01418 Helix-turn-helix domain, rpiR family AMK58_16385 PF01380 SIS domain AMK58_16385 PF02685 Glucokinase AMK58_16390 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMK58_16395 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_16400 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_16410 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMK58_16425 PF01396 Topoisomerase DNA binding C4 zinc finger AMK58_16425 PF13368 Topoisomerase C-terminal repeat AMK58_16425 PF01751 Toprim domain AMK58_16425 PF01131 DNA topoisomerase AMK58_16430 PF02481 DNA recombination-mediator protein A AMK58_16430 PF17782 DprA winged helix domain AMK58_16450 PF07690 Major Facilitator Superfamily AMK58_16480 PF00072 Response regulator receiver domain AMK58_16480 PF00989 PAS fold AMK58_16480 PF01627 Hpt domain AMK58_16480 PF00512 His Kinase A (phospho-acceptor) domain AMK58_16480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_16480 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_16485 PF00072 Response regulator receiver domain AMK58_16485 PF00486 Transcriptional regulatory protein, C terminal AMK58_16515 PF01177 Asp/Glu/Hydantoin racemase AMK58_16520 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16525 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16535 PF00005 ABC transporter AMK58_16535 PF08402 TOBE domain AMK58_16545 PF00762 Ferrochelatase AMK58_16550 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMK58_16555 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16560 PF00005 ABC transporter AMK58_16565 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16575 PF04972 BON domain AMK58_16575 PF01476 LysM domain AMK58_16580 PF00595 PDZ domain AMK58_16590 PF00378 Enoyl-CoA hydratase/isomerase AMK58_16595 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMK58_16595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_16600 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMK58_16600 PF00356 Bacterial regulatory proteins, lacI family AMK58_16610 PF00920 Dehydratase family AMK58_16615 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMK58_16620 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMK58_16620 PF00356 Bacterial regulatory proteins, lacI family AMK58_16625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_16625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMK58_16630 PF00005 ABC transporter AMK58_16640 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16645 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16650 PF03453 MoeA N-terminal region (domain I and II) AMK58_16650 PF03454 MoeA C-terminal region (domain IV) AMK58_16650 PF00994 Probable molybdopterin binding domain AMK58_16670 PF00106 short chain dehydrogenase AMK58_16675 PF01925 Sulfite exporter TauE/SafE AMK58_16690 PF00692 dUTPase AMK58_16695 PF07702 UTRA domain AMK58_16695 PF00392 Bacterial regulatory proteins, gntR family AMK58_16700 PF13458 Periplasmic binding protein AMK58_16705 PF02653 Branched-chain amino acid transport system / permease component AMK58_16710 PF11862 Domain of unknown function (DUF3382) AMK58_16710 PF02653 Branched-chain amino acid transport system / permease component AMK58_16715 PF00005 ABC transporter AMK58_16715 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_16720 PF00005 ABC transporter AMK58_16730 PF02538 Hydantoinase B/oxoprolinase AMK58_16735 PF05378 Hydantoinase/oxoprolinase N-terminal region AMK58_16735 PF01968 Hydantoinase/oxoprolinase AMK58_16740 PF00857 Isochorismatase family AMK58_16750 PF00330 Aconitase family (aconitate hydratase) AMK58_16755 PF00694 Aconitase C-terminal domain AMK58_16760 PF00990 Diguanylate cyclase, GGDEF domain AMK58_16760 PF00072 Response regulator receiver domain AMK58_16775 PF03372 Endonuclease/Exonuclease/phosphatase family AMK58_16780 PF01521 Iron-sulphur cluster biosynthesis AMK58_16785 PF13286 Phosphohydrolase-associated domain AMK58_16785 PF01966 HD domain AMK58_16790 PF05746 DALR anticodon binding domain AMK58_16790 PF00750 tRNA synthetases class I (R) AMK58_16790 PF03485 Arginyl tRNA synthetase N terminal domain AMK58_16800 PF00933 Glycosyl hydrolase family 3 N terminal domain AMK58_16805 PF02163 Peptidase family M50 AMK58_16810 PF02616 Segregation and condensation protein ScpA AMK58_16815 PF04079 Segregation and condensation complex subunit ScpB AMK58_16820 PF08402 TOBE domain AMK58_16820 PF00005 ABC transporter AMK58_16825 PF02416 mttA/Hcf106 family AMK58_16830 PF02416 mttA/Hcf106 family AMK58_16835 PF00902 Sec-independent protein translocase protein (TatC) AMK58_16840 PF00072 Response regulator receiver domain AMK58_16840 PF00990 Diguanylate cyclase, GGDEF domain AMK58_16845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMK58_16845 PF02403 Seryl-tRNA synthetase N-terminal domain AMK58_16850 PF01975 Survival protein SurE AMK58_16860 PF01476 LysM domain AMK58_16860 PF01551 Peptidase family M23 AMK58_16875 PF02699 Preprotein translocase subunit AMK58_16880 PF07549 SecD/SecF GG Motif AMK58_16880 PF02355 Protein export membrane protein AMK58_16885 PF07549 SecD/SecF GG Motif AMK58_16885 PF02355 Protein export membrane protein AMK58_16890 PF04430 Protein of unknown function (DUF498/DUF598) AMK58_16895 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMK58_16895 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMK58_16900 PF01593 Flavin containing amine oxidoreductase AMK58_16925 PF01134 Glucose inhibited division protein A AMK58_16940 PF17755 UvrA DNA-binding domain AMK58_16940 PF17760 UvrA interaction domain AMK58_16945 PF00436 Single-strand binding protein family AMK58_16975 PF01554 MatE AMK58_16980 PF03989 DNA gyrase C-terminal domain, beta-propeller AMK58_16980 PF00521 DNA gyrase/topoisomerase IV, subunit A AMK58_16985 PF01467 Cytidylyltransferase-like AMK58_17020 PF00920 Dehydratase family AMK58_17030 PF16360 GTP-binding GTPase Middle Region AMK58_17030 PF13167 GTP-binding GTPase N-terminal AMK58_17030 PF01926 50S ribosome-binding GTPase AMK58_17050 PF01588 Putative tRNA binding domain AMK58_17055 PF04055 Radical SAM superfamily AMK58_17055 PF18693 TRAM domain AMK58_17055 PF00919 Uncharacterized protein family UPF0004 AMK58_17070 PF02634 FdhD/NarQ family AMK58_17075 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_17075 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMK58_17075 PF01568 Molydopterin dinucleotide binding domain AMK58_17075 PF00384 Molybdopterin oxidoreductase AMK58_17075 PF12838 4Fe-4S dicluster domain AMK58_17080 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMK58_17080 PF00037 4Fe-4S binding domain AMK58_17080 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMK58_17090 PF03466 LysR substrate binding domain AMK58_17090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_17095 PF07690 Major Facilitator Superfamily AMK58_17100 PF01627 Hpt domain AMK58_17100 PF00512 His Kinase A (phospho-acceptor) domain AMK58_17100 PF00072 Response regulator receiver domain AMK58_17100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_17100 PF00672 HAMP domain AMK58_17100 PF17149 Periplasmic sensor domain found in signal transduction proteins AMK58_17105 PF00892 EamA-like transporter family AMK58_17110 PF00430 ATP synthase B/B' CF(0) AMK58_17110 PF11154 Protein of unknown function (DUF2934) AMK58_17145 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMK58_17160 PF00034 Cytochrome c AMK58_17165 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AMK58_17165 PF01433 Peptidase family M1 domain AMK58_17165 PF11940 Domain of unknown function (DUF3458) Ig-like fold AMK58_17175 PF01521 Iron-sulphur cluster biosynthesis AMK58_17185 PF01592 NifU-like N terminal domain AMK58_17190 PF00266 Aminotransferase class-V AMK58_17195 PF01458 Uncharacterized protein family (UPF0051) AMK58_17200 PF00005 ABC transporter AMK58_17205 PF01458 Uncharacterized protein family (UPF0051) AMK58_17210 PF02082 Transcriptional regulator AMK58_17240 PF00072 Response regulator receiver domain AMK58_17240 PF00486 Transcriptional regulatory protein, C terminal AMK58_17245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_17275 PF04542 Sigma-70 region 2 AMK58_17275 PF08281 Sigma-70, region 4 AMK58_17290 PF00343 Carbohydrate phosphorylase AMK58_17295 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMK58_17295 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMK58_17305 PF16658 Class II release factor RF3, C-terminal domain AMK58_17305 PF00009 Elongation factor Tu GTP binding domain AMK58_17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_17310 PF00512 His Kinase A (phospho-acceptor) domain AMK58_17310 PF02743 Cache domain AMK58_17315 PF00072 Response regulator receiver domain AMK58_17315 PF00158 Sigma-54 interaction domain AMK58_17315 PF02954 Bacterial regulatory protein, Fis family AMK58_17320 PF03746 LamB/YcsF family AMK58_17325 PF02626 Carboxyltransferase domain, subdomain A and B AMK58_17330 PF02682 Carboxyltransferase domain, subdomain C and D AMK58_17335 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_17350 PF07286 Protein of unknown function (DUF1445) AMK58_17355 PF03466 LysR substrate binding domain AMK58_17355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_17365 PF00873 AcrB/AcrD/AcrF family AMK58_17380 PF00873 AcrB/AcrD/AcrF family AMK58_17385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMK58_17400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_17400 PF00672 HAMP domain AMK58_17400 PF17200 Single Cache domain 2 AMK58_17420 PF00128 Alpha amylase, catalytic domain AMK58_17425 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_17430 PF02798 Glutathione S-transferase, N-terminal domain AMK58_17430 PF00043 Glutathione S-transferase, C-terminal domain AMK58_17435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_17440 PF00072 Response regulator receiver domain AMK58_17450 PF00561 alpha/beta hydrolase fold AMK58_17455 PF01906 Putative heavy-metal-binding AMK58_17485 PF01810 LysE type translocator AMK58_17490 PF03707 Bacterial signalling protein N terminal repeat AMK58_17490 PF00563 EAL domain AMK58_17490 PF00990 Diguanylate cyclase, GGDEF domain AMK58_17495 PF09371 Tex-like protein N-terminal domain AMK58_17495 PF16921 Tex protein YqgF-like domain AMK58_17495 PF00575 S1 RNA binding domain AMK58_17495 PF17674 HHH domain AMK58_17500 PF00361 Proton-conducting membrane transporter AMK58_17505 PF00146 NADH dehydrogenase AMK58_17515 PF00361 Proton-conducting membrane transporter AMK58_17520 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMK58_17525 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMK58_17530 PF03819 MazG nucleotide pyrophosphohydrolase domain AMK58_17545 PF00459 Inositol monophosphatase family AMK58_17560 PF16360 GTP-binding GTPase Middle Region AMK58_17560 PF13167 GTP-binding GTPase N-terminal AMK58_17560 PF01926 50S ribosome-binding GTPase AMK58_17565 PF17209 Hfq protein AMK58_17575 PF01063 Amino-transferase class IV AMK58_17580 PF02080 TrkA-C domain AMK58_17580 PF02254 TrkA-N domain AMK58_17590 PF00158 Sigma-54 interaction domain AMK58_17590 PF02954 Bacterial regulatory protein, Fis family AMK58_17590 PF00072 Response regulator receiver domain AMK58_17595 PF00672 HAMP domain AMK58_17595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_17600 PF00158 Sigma-54 interaction domain AMK58_17600 PF00072 Response regulator receiver domain AMK58_17600 PF02954 Bacterial regulatory protein, Fis family AMK58_17605 PF00989 PAS fold AMK58_17605 PF00512 His Kinase A (phospho-acceptor) domain AMK58_17605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_17610 PF01207 Dihydrouridine synthase (Dus) AMK58_17615 PF01578 Cytochrome C assembly protein AMK58_17620 PF02542 YgbB family AMK58_17620 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMK58_17625 PF02464 Competence-damaged protein AMK58_17625 PF00994 Probable molybdopterin binding domain AMK58_17625 PF18146 Damage-inducible protein CinA KH domain AMK58_17630 PF03364 Polyketide cyclase / dehydrase and lipid transport AMK58_17635 PF04055 Radical SAM superfamily AMK58_17635 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMK58_17640 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_17640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMK58_17645 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMK58_17645 PF00364 Biotin-requiring enzyme AMK58_17645 PF02817 e3 binding domain AMK58_17650 PF00364 Biotin-requiring enzyme AMK58_17650 PF02780 Transketolase, C-terminal domain AMK58_17650 PF02779 Transketolase, pyrimidine binding domain AMK58_17655 PF00676 Dehydrogenase E1 component AMK58_17660 PF04977 Septum formation initiator AMK58_17665 PF03061 Thioesterase superfamily AMK58_17670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_17670 PF00986 DNA gyrase B subunit, carboxyl terminus AMK58_17670 PF01751 Toprim domain AMK58_17670 PF00204 DNA gyrase B AMK58_17680 PF12697 Alpha/beta hydrolase family AMK58_17690 PF00271 Helicase conserved C-terminal domain AMK58_17690 PF00270 DEAD/DEAH box helicase AMK58_17700 PF04453 LPS transport system D AMK58_17730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMK58_17735 PF00069 Protein kinase domain AMK58_17735 PF03793 PASTA domain AMK58_17740 PF01263 Aldose 1-epimerase AMK58_17765 PF04168 A predicted alpha-helical domain with a conserved ER motif. AMK58_17765 PF14403 Circularly permuted ATP-grasp type 2 AMK58_17770 PF01841 Transglutaminase-like superfamily AMK58_17770 PF08379 Bacterial transglutaminase-like N-terminal region AMK58_17775 PF00873 AcrB/AcrD/AcrF family AMK58_17780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMK58_17785 PF00149 Calcineurin-like phosphoesterase AMK58_17790 PF00535 Glycosyl transferase family 2 AMK58_17795 PF00574 Clp protease AMK58_17815 PF05128 Domain of unknown function (DUF697) AMK58_17820 PF04317 YcjX-like family, DUF463 AMK58_17825 PF01926 50S ribosome-binding GTPase AMK58_17825 PF07650 KH domain AMK58_17830 PF00035 Double-stranded RNA binding motif AMK58_17830 PF14622 Ribonuclease-III-like AMK58_17835 PF10502 Signal peptidase, peptidase S26 AMK58_17840 PF01648 4'-phosphopantetheinyl transferase superfamily AMK58_17845 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMK58_17855 PF02824 TGS domain AMK58_17855 PF04607 Region found in RelA / SpoT proteins AMK58_17855 PF13291 ACT domain AMK58_17860 PF01192 RNA polymerase Rpb6 AMK58_17875 PF13426 PAS domain AMK58_17875 PF07568 Histidine kinase AMK58_17875 PF13581 Histidine kinase-like ATPase domain AMK58_17885 PF12802 MarR family AMK58_17895 PF05362 Lon protease (S16) C-terminal proteolytic domain AMK58_17895 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMK58_17895 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_17905 PF11154 Protein of unknown function (DUF2934) AMK58_17905 PF00430 ATP synthase B/B' CF(0) AMK58_17920 PF00657 GDSL-like Lipase/Acylhydrolase AMK58_17925 PF01292 Prokaryotic cytochrome b561 AMK58_17935 PF01435 Peptidase family M48 AMK58_17955 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_17965 PF00196 Bacterial regulatory proteins, luxR family AMK58_17965 PF00072 Response regulator receiver domain AMK58_17975 PF13409 Glutathione S-transferase, N-terminal domain AMK58_17980 PF03358 NADPH-dependent FMN reductase AMK58_17985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_17985 PF03466 LysR substrate binding domain AMK58_18000 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMK58_18025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_18025 PF00512 His Kinase A (phospho-acceptor) domain AMK58_18025 PF00989 PAS fold AMK58_18030 PF00005 ABC transporter AMK58_18030 PF00664 ABC transporter transmembrane region AMK58_18035 PF01734 Patatin-like phospholipase AMK58_18060 PF03471 Transporter associated domain AMK58_18060 PF00999 Sodium/hydrogen exchanger family AMK58_18060 PF02080 TrkA-C domain AMK58_18065 PF00563 EAL domain AMK58_18065 PF00990 Diguanylate cyclase, GGDEF domain AMK58_18065 PF08447 PAS fold AMK58_18065 PF08448 PAS fold AMK58_18070 PF04542 Sigma-70 region 2 AMK58_18070 PF00140 Sigma-70 factor, region 1.2 AMK58_18070 PF04545 Sigma-70, region 4 AMK58_18075 PF00158 Sigma-54 interaction domain AMK58_18075 PF00072 Response regulator receiver domain AMK58_18075 PF02954 Bacterial regulatory protein, Fis family AMK58_18090 PF04461 Protein of unknown function (DUF520) AMK58_18120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_18120 PF00005 ABC transporter AMK58_18125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_18125 PF00005 ABC transporter AMK58_18130 PF12911 N-terminal TM domain of oligopeptide transport permease C AMK58_18130 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_18135 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_18140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_18150 PF08241 Methyltransferase domain AMK58_18160 PF00892 EamA-like transporter family AMK58_18165 PF01175 Urocanase Rossmann-like domain AMK58_18165 PF17391 Urocanase N-terminal domain AMK58_18165 PF17392 Urocanase C-terminal domain AMK58_18180 PF01979 Amidohydrolase family AMK58_18190 PF00398 Ribosomal RNA adenine dimethylase AMK58_18200 PF13193 AMP-binding enzyme C-terminal domain AMK58_18200 PF00501 AMP-binding enzyme AMK58_18215 PF00072 Response regulator receiver domain AMK58_18220 PF00551 Formyl transferase AMK58_18245 PF01520 N-acetylmuramoyl-L-alanine amidase AMK58_18250 PF04972 BON domain AMK58_18290 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMK58_18290 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMK58_18310 PF00561 alpha/beta hydrolase fold AMK58_18310 PF00364 Biotin-requiring enzyme AMK58_18320 PF02348 Cytidylyltransferase AMK58_18325 PF03102 NeuB family AMK58_18325 PF08666 SAF domain AMK58_18340 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_18340 PF12804 MobA-like NTP transferase domain AMK58_18360 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMK58_18360 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMK58_18380 PF02322 Cytochrome bd terminal oxidase subunit II AMK58_18385 PF01654 Cytochrome bd terminal oxidase subunit I AMK58_18390 PF04542 Sigma-70 region 2 AMK58_18390 PF04545 Sigma-70, region 4 AMK58_18390 PF00140 Sigma-70 factor, region 1.2 AMK58_18410 PF00005 ABC transporter AMK58_18415 PF02405 Permease MlaE AMK58_18420 PF00156 Phosphoribosyl transferase domain AMK58_18435 PF01814 Hemerythrin HHE cation binding domain AMK58_18465 PF00149 Calcineurin-like phosphoesterase AMK58_18470 PF03466 LysR substrate binding domain AMK58_18470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_18475 PF00248 Aldo/keto reductase family AMK58_18480 PF00224 Pyruvate kinase, barrel domain AMK58_18480 PF02887 Pyruvate kinase, alpha/beta domain AMK58_18490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_18490 PF03466 LysR substrate binding domain AMK58_18505 PF02540 NAD synthase AMK58_18505 PF00958 GMP synthase C terminal domain AMK58_18505 PF00117 Glutamine amidotransferase class-I AMK58_18510 PF00583 Acetyltransferase (GNAT) family AMK58_18530 PF01189 16S rRNA methyltransferase RsmB/F AMK58_18530 PF01029 NusB family AMK58_18535 PF03562 MltA specific insert domain AMK58_18535 PF06725 3D domain AMK58_18545 PF06906 Protein of unknown function (DUF1272) AMK58_18550 PF02527 rRNA small subunit methyltransferase G AMK58_18550 PF00588 SpoU rRNA Methylase family AMK58_18555 PF00478 IMP dehydrogenase / GMP reductase domain AMK58_18555 PF00571 CBS domain AMK58_18560 PF01728 FtsJ-like methyltransferase AMK58_18585 PF00113 Enolase, C-terminal TIM barrel domain AMK58_18585 PF03952 Enolase, N-terminal domain AMK58_18600 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AMK58_18605 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_18615 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_18620 PF00465 Iron-containing alcohol dehydrogenase AMK58_18635 PF08386 TAP-like protein AMK58_18635 PF00561 alpha/beta hydrolase fold AMK58_18660 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMK58_18660 PF14310 Fibronectin type III-like domain AMK58_18660 PF00933 Glycosyl hydrolase family 3 N terminal domain AMK58_18670 PF00672 HAMP domain AMK58_18670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_18670 PF00512 His Kinase A (phospho-acceptor) domain AMK58_18725 PF00005 ABC transporter AMK58_18725 PF03459 TOBE domain AMK58_18730 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_18740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_18740 PF03459 TOBE domain AMK58_18755 PF03350 Uncharacterized protein family, UPF0114 AMK58_18860 PF07724 AAA domain (Cdc48 subfamily) AMK58_18860 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_18860 PF17871 AAA lid domain AMK58_18860 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_18865 PF04717 Type VI secretion system, phage-baseplate injector AMK58_18880 PF00817 impB/mucB/samB family AMK58_18880 PF11799 impB/mucB/samB family C-terminal domain AMK58_18885 PF12973 ChrR Cupin-like domain AMK58_18890 PF04545 Sigma-70, region 4 AMK58_18890 PF04542 Sigma-70 region 2 AMK58_18895 PF13185 GAF domain AMK58_18895 PF02954 Bacterial regulatory protein, Fis family AMK58_18895 PF00158 Sigma-54 interaction domain AMK58_18900 PF02901 Pyruvate formate lyase-like AMK58_18900 PF01228 Glycine radical AMK58_18910 PF02470 MlaD protein AMK58_18915 PF04403 Paraquat-inducible protein A AMK58_18930 PF01515 Phosphate acetyl/butaryl transferase AMK58_18930 PF03949 Malic enzyme, NAD binding domain AMK58_18930 PF00390 Malic enzyme, N-terminal domain AMK58_18935 PF00375 Sodium:dicarboxylate symporter family AMK58_18940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_18940 PF00512 His Kinase A (phospho-acceptor) domain AMK58_18945 PF02954 Bacterial regulatory protein, Fis family AMK58_18945 PF00072 Response regulator receiver domain AMK58_18945 PF00158 Sigma-54 interaction domain AMK58_18965 PF02632 BioY family AMK58_18970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMK58_18970 PF00364 Biotin-requiring enzyme AMK58_18970 PF02785 Biotin carboxylase C-terminal domain AMK58_18970 PF00289 Biotin carboxylase, N-terminal domain AMK58_18975 PF01039 Carboxyl transferase domain AMK58_18980 PF09856 Predicted transcriptional regulator (DUF2083) AMK58_18980 PF01381 Helix-turn-helix AMK58_18980 PF06114 IrrE N-terminal-like domain AMK58_18985 PF01177 Asp/Glu/Hydantoin racemase AMK58_19000 PF00512 His Kinase A (phospho-acceptor) domain AMK58_19000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_19005 PF02637 GatB domain AMK58_19005 PF02934 GatB/GatE catalytic domain AMK58_19010 PF01425 Amidase AMK58_19015 PF02686 Glu-tRNAGln amidotransferase C subunit AMK58_19025 PF03652 Holliday junction resolvase AMK58_19055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_19055 PF03466 LysR substrate binding domain AMK58_19070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMK58_19070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMK58_19075 PF01979 Amidohydrolase family AMK58_19080 PF02660 Glycerol-3-phosphate acyltransferase AMK58_19085 PF00486 Transcriptional regulatory protein, C terminal AMK58_19085 PF00072 Response regulator receiver domain AMK58_19095 PF07883 Cupin domain AMK58_19105 PF04307 LexA-binding, inner membrane-associated putative hydrolase AMK58_19115 PF01799 [2Fe-2S] binding domain AMK58_19115 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_19120 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMK58_19120 PF00941 FAD binding domain in molybdopterin dehydrogenase AMK58_19125 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_19125 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_19130 PF13192 Thioredoxin domain AMK58_19130 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_19135 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMK58_19135 PF00578 AhpC/TSA family AMK58_19140 PF03466 LysR substrate binding domain AMK58_19140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_19155 PF02153 Prephenate dehydrogenase AMK58_19160 PF00155 Aminotransferase class I and II AMK58_19170 PF00561 alpha/beta hydrolase fold AMK58_19175 PF07021 Methionine biosynthesis protein MetW AMK58_19175 PF00561 alpha/beta hydrolase fold AMK58_19195 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMK58_19195 PF00753 Metallo-beta-lactamase superfamily AMK58_19200 PF13417 Glutathione S-transferase, N-terminal domain AMK58_19200 PF00043 Glutathione S-transferase, C-terminal domain AMK58_19210 PF00892 EamA-like transporter family AMK58_19220 PF05050 Methyltransferase FkbM domain AMK58_19230 PF13382 Adenine deaminase C-terminal domain AMK58_19230 PF01979 Amidohydrolase family AMK58_19245 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMK58_19245 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AMK58_19250 PF13247 4Fe-4S dicluster domain AMK58_19255 PF03916 Polysulphide reductase, NrfD AMK58_19260 PF00374 Nickel-dependent hydrogenase AMK58_19265 PF01750 Hydrogenase maturation protease AMK58_19270 PF10996 Beta-Casp domain AMK58_19270 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMK58_19270 PF00753 Metallo-beta-lactamase superfamily AMK58_19275 PF00753 Metallo-beta-lactamase superfamily AMK58_19285 PF01455 HupF/HypC family AMK58_19295 PF00374 Nickel-dependent hydrogenase AMK58_19300 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AMK58_19305 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMK58_19310 PF01810 LysE type translocator AMK58_19315 PF07503 HypF finger AMK58_19315 PF01300 Telomere recombination AMK58_19315 PF17788 HypF Kae1-like domain AMK58_19315 PF00708 Acylphosphatase AMK58_19320 PF01455 HupF/HypC family AMK58_19325 PF00586 AIR synthase related protein, N-terminal domain AMK58_19325 PF02769 AIR synthase related protein, C-terminal domain AMK58_19330 PF02397 Bacterial sugar transferase AMK58_19335 PF03572 Peptidase family S41 AMK58_19335 PF13180 PDZ domain AMK58_19340 PF00313 'Cold-shock' DNA-binding domain AMK58_19345 PF02810 SEC-C motif AMK58_19350 PF00027 Cyclic nucleotide-binding domain AMK58_19350 PF13302 Acetyltransferase (GNAT) domain AMK58_19355 PF01351 Ribonuclease HII AMK58_19360 PF18755 Restriction Enzyme Adenine Methylase Associated AMK58_19360 PF01555 DNA methylase AMK58_19370 PF13188 PAS domain AMK58_19370 PF00072 Response regulator receiver domain AMK58_19370 PF00512 His Kinase A (phospho-acceptor) domain AMK58_19370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_19370 PF08448 PAS fold AMK58_19380 PF00730 HhH-GPD superfamily base excision DNA repair protein AMK58_19380 PF00633 Helix-hairpin-helix motif AMK58_19380 PF10576 Iron-sulfur binding domain of endonuclease III AMK58_19380 PF14815 NUDIX domain AMK58_19395 PF02463 RecF/RecN/SMC N terminal domain AMK58_19400 PF01266 FAD dependent oxidoreductase AMK58_19410 PF03922 OmpW family AMK58_19420 PF00196 Bacterial regulatory proteins, luxR family AMK58_19420 PF00072 Response regulator receiver domain AMK58_19425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_19425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_19425 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_19425 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMK58_19430 PF00378 Enoyl-CoA hydratase/isomerase AMK58_19430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMK58_19430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMK58_19435 PF00108 Thiolase, N-terminal domain AMK58_19435 PF02803 Thiolase, C-terminal domain AMK58_19440 PF09278 MerR, DNA binding AMK58_19440 PF00376 MerR family regulatory protein AMK58_19450 PF00207 Alpha-2-macroglobulin family AMK58_19450 PF01835 MG2 domain AMK58_19450 PF17962 Bacterial macroglobulin domain 6 AMK58_19450 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AMK58_19450 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AMK58_19450 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AMK58_19450 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AMK58_19450 PF07703 Alpha-2-macroglobulin bait region domain AMK58_19455 PF00512 His Kinase A (phospho-acceptor) domain AMK58_19455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_19460 PF00155 Aminotransferase class I and II AMK58_19470 PF08345 Flagellar M-ring protein C-terminal AMK58_19470 PF01514 Secretory protein of YscJ/FliF family AMK58_19480 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMK58_19485 PF01618 MotA/TolQ/ExbB proton channel family AMK58_19490 PF00158 Sigma-54 interaction domain AMK58_19490 PF02954 Bacterial regulatory protein, Fis family AMK58_19495 PF00771 FHIPEP family AMK58_19500 PF02881 SRP54-type protein, helical bundle domain AMK58_19500 PF00448 SRP54-type protein, GTPase domain AMK58_19505 PF10609 NUBPL iron-transfer P-loop NTPase AMK58_19515 PF14489 QueF-like protein AMK58_19525 PF00990 Diguanylate cyclase, GGDEF domain AMK58_19525 PF00563 EAL domain AMK58_19525 PF03707 Bacterial signalling protein N terminal repeat AMK58_19535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMK58_19535 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMK58_19535 PF18269 T3SS EscN ATPase C-terminal domain AMK58_19540 PF00072 Response regulator receiver domain AMK58_19540 PF00486 Transcriptional regulatory protein, C terminal AMK58_19550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_19550 PF03466 LysR substrate binding domain AMK58_19555 PF01739 CheR methyltransferase, SAM binding domain AMK58_19555 PF03705 CheR methyltransferase, all-alpha domain AMK58_19560 PF00072 Response regulator receiver domain AMK58_19560 PF01339 CheB methylesterase AMK58_19565 PF08769 Sporulation initiation factor Spo0A C terminal AMK58_19565 PF00072 Response regulator receiver domain AMK58_19570 PF01584 CheW-like domain AMK58_19575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_19575 PF01584 CheW-like domain AMK58_19575 PF02895 Signal transducing histidine kinase, homodimeric domain AMK58_19575 PF07194 P2 response regulator binding domain AMK58_19575 PF01627 Hpt domain AMK58_19580 PF10090 Histidine phosphotransferase C-terminal domain AMK58_19595 PF01804 Penicillin amidase AMK58_19600 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_19600 PF13291 ACT domain AMK58_19605 PF01613 Flavin reductase like domain AMK58_19610 PF00691 OmpA family AMK58_19610 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMK58_19615 PF14403 Circularly permuted ATP-grasp type 2 AMK58_19620 PF14403 Circularly permuted ATP-grasp type 2 AMK58_19620 PF04168 A predicted alpha-helical domain with a conserved ER motif. AMK58_19625 PF04377 Arginine-tRNA-protein transferase, C terminus AMK58_19625 PF04376 Arginine-tRNA-protein transferase, N terminus AMK58_19635 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_19640 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_19645 PF03989 DNA gyrase C-terminal domain, beta-propeller AMK58_19645 PF00521 DNA gyrase/topoisomerase IV, subunit A AMK58_19650 PF11967 Recombination protein O N terminal AMK58_19650 PF02565 Recombination protein O C terminal AMK58_19655 PF00990 Diguanylate cyclase, GGDEF domain AMK58_19655 PF00563 EAL domain AMK58_19655 PF08448 PAS fold AMK58_19655 PF08447 PAS fold AMK58_19670 PF07690 Major Facilitator Superfamily AMK58_19675 PF13533 Biotin-lipoyl like AMK58_19680 PF18665 Tetracyclin repressor-like, C-terminal domain AMK58_19680 PF00440 Bacterial regulatory proteins, tetR family AMK58_19690 PF00005 ABC transporter AMK58_19720 PF00317 Ribonucleotide reductase, all-alpha domain AMK58_19720 PF03477 ATP cone domain AMK58_19720 PF02867 Ribonucleotide reductase, barrel domain AMK58_19725 PF09335 SNARE associated Golgi protein AMK58_19730 PF00117 Glutamine amidotransferase class-I AMK58_19730 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMK58_19735 PF00392 Bacterial regulatory proteins, gntR family AMK58_19735 PF00155 Aminotransferase class I and II AMK58_19740 PF03594 Benzoate membrane transport protein AMK58_19745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_19745 PF03466 LysR substrate binding domain AMK58_19750 PF02525 Flavodoxin-like fold AMK58_19765 PF12848 ABC transporter AMK58_19765 PF00005 ABC transporter AMK58_19775 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_19780 PF01924 Hydrogenase formation hypA family AMK58_19795 PF04752 ChaC-like protein AMK58_19805 PF05193 Peptidase M16 inactive domain AMK58_19805 PF00675 Insulinase (Peptidase family M16) AMK58_19825 PF00330 Aconitase family (aconitate hydratase) AMK58_19825 PF06434 Aconitate hydratase 2 N-terminus AMK58_19825 PF11791 Aconitate B N-terminal domain AMK58_19835 PF07690 Major Facilitator Superfamily AMK58_19845 PF03737 Aldolase/RraA AMK58_19855 PF01865 Protein of unknown function DUF47 AMK58_19860 PF01384 Phosphate transporter family AMK58_19870 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_19870 PF00072 Response regulator receiver domain AMK58_19885 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AMK58_19895 PF13545 Crp-like helix-turn-helix domain AMK58_19895 PF00027 Cyclic nucleotide-binding domain AMK58_19905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_19905 PF13188 PAS domain AMK58_19905 PF00072 Response regulator receiver domain AMK58_19905 PF00512 His Kinase A (phospho-acceptor) domain AMK58_19905 PF08448 PAS fold AMK58_19910 PF00072 Response regulator receiver domain AMK58_19915 PF01370 NAD dependent epimerase/dehydratase family AMK58_19920 PF02690 Na+/Pi-cotransporter AMK58_19930 PF03466 LysR substrate binding domain AMK58_19930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_19940 PF00563 EAL domain AMK58_19940 PF03707 Bacterial signalling protein N terminal repeat AMK58_19940 PF00990 Diguanylate cyclase, GGDEF domain AMK58_19960 PF01475 Ferric uptake regulator family AMK58_19980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_19990 PF16998 17 kDa outer membrane surface antigen AMK58_19990 PF05433 Glycine zipper 2TM domain AMK58_20040 PF00027 Cyclic nucleotide-binding domain AMK58_20040 PF13545 Crp-like helix-turn-helix domain AMK58_20065 PF03167 Uracil DNA glycosylase superfamily AMK58_20070 PF01464 Transglycosylase SLT domain AMK58_20075 PF00994 Probable molybdopterin binding domain AMK58_20090 PF08544 GHMP kinases C terminal AMK58_20090 PF00288 GHMP kinases N terminal domain AMK58_20105 PF00403 Heavy-metal-associated domain AMK58_20130 PF02678 Pirin AMK58_20130 PF17954 Quercetinase C-terminal cupin domain AMK58_20135 PF03458 UPF0126 domain AMK58_20145 PF02627 Carboxymuconolactone decarboxylase family AMK58_20150 PF13411 MerR HTH family regulatory protein AMK58_20155 PF00005 ABC transporter AMK58_20160 PF01925 Sulfite exporter TauE/SafE AMK58_20165 PF00501 AMP-binding enzyme AMK58_20165 PF13193 AMP-binding enzyme C-terminal domain AMK58_20170 PF16998 17 kDa outer membrane surface antigen AMK58_20170 PF05433 Glycine zipper 2TM domain AMK58_20200 PF07869 Protein of unknown function (DUF1656) AMK58_20205 PF04632 Fusaric acid resistance protein family AMK58_20210 PF00529 HlyD membrane-fusion protein of T1SS AMK58_20210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMK58_20220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_20220 PF03466 LysR substrate binding domain AMK58_20225 PF07690 Major Facilitator Superfamily AMK58_20230 PF00248 Aldo/keto reductase family AMK58_20235 PF03600 Citrate transporter AMK58_20235 PF02080 TrkA-C domain AMK58_20265 PF02515 CoA-transferase family III AMK58_20270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_20270 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_20270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_20275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_20275 PF03466 LysR substrate binding domain AMK58_20280 PF00005 ABC transporter AMK58_20280 PF08402 TOBE domain AMK58_20285 PF13416 Bacterial extracellular solute-binding protein AMK58_20290 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_20295 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_20300 PF07883 Cupin domain AMK58_20300 PF01381 Helix-turn-helix AMK58_20305 PF00171 Aldehyde dehydrogenase family AMK58_20310 PF00202 Aminotransferase class-III AMK58_20320 PF07237 Protein of unknown function (DUF1428) AMK58_20335 PF00440 Bacterial regulatory proteins, tetR family AMK58_20350 PF00202 Aminotransferase class-III AMK58_20355 PF00491 Arginase family AMK58_20360 PF01037 Lrp/AsnC ligand binding domain AMK58_20360 PF13404 AsnC-type helix-turn-helix domain AMK58_20365 PF13614 AAA domain AMK58_20395 PF03884 DNA gyrase inhibitor YacG AMK58_20400 PF00575 S1 RNA binding domain AMK58_20400 PF10150 Ribonuclease E/G family AMK58_20405 PF02545 Maf-like protein AMK58_20410 PF01176 Translation initiation factor 1A / IF-1 AMK58_20420 PF00672 HAMP domain AMK58_20420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_20420 PF00512 His Kinase A (phospho-acceptor) domain AMK58_20420 PF17149 Periplasmic sensor domain found in signal transduction proteins AMK58_20420 PF00072 Response regulator receiver domain AMK58_20420 PF01627 Hpt domain AMK58_20425 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMK58_20430 PF06793 Uncharacterised protein family (UPF0262) AMK58_20435 PF00815 Histidinol dehydrogenase AMK58_20440 PF01634 ATP phosphoribosyltransferase AMK58_20450 PF03180 NLPA lipoprotein AMK58_20455 PF00501 AMP-binding enzyme AMK58_20455 PF13193 AMP-binding enzyme C-terminal domain AMK58_20460 PF00005 ABC transporter AMK58_20460 PF09383 NIL domain AMK58_20465 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_20470 PF03180 NLPA lipoprotein AMK58_20480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_20480 PF08448 PAS fold AMK58_20480 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB AMK58_20480 PF00512 His Kinase A (phospho-acceptor) domain AMK58_20480 PF00672 HAMP domain AMK58_20485 PF00128 Alpha amylase, catalytic domain AMK58_20485 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMK58_20505 PF00300 Histidine phosphatase superfamily (branch 1) AMK58_20510 PF00270 DEAD/DEAH box helicase AMK58_20510 PF00271 Helicase conserved C-terminal domain AMK58_20510 PF17191 RecG wedge domain AMK58_20515 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMK58_20520 PF13614 AAA domain AMK58_20520 PF02706 Chain length determinant protein AMK58_20520 PF13807 G-rich domain on putative tyrosine kinase AMK58_20525 PF00331 Glycosyl hydrolase family 10 AMK58_20535 PF00553 Cellulose binding domain AMK58_20535 PF00150 Cellulase (glycosyl hydrolase family 5) AMK58_20545 PF02397 Bacterial sugar transferase AMK58_20555 PF00535 Glycosyl transferase family 2 AMK58_20560 PF13439 Glycosyltransferase Family 4 AMK58_20560 PF00534 Glycosyl transferases group 1 AMK58_20565 PF00862 Sucrose synthase AMK58_20565 PF00534 Glycosyl transferases group 1 AMK58_20580 PF00501 AMP-binding enzyme AMK58_20580 PF13193 AMP-binding enzyme C-terminal domain AMK58_20585 PF13537 Glutamine amidotransferase domain AMK58_20585 PF00733 Asparagine synthase AMK58_20590 PF02540 NAD synthase AMK58_20615 PF00486 Transcriptional regulatory protein, C terminal AMK58_20615 PF00072 Response regulator receiver domain AMK58_20620 PF02254 TrkA-N domain AMK58_20620 PF02080 TrkA-C domain AMK58_20620 PF00999 Sodium/hydrogen exchanger family AMK58_20630 PF00005 ABC transporter AMK58_20630 PF12857 TOBE-like domain AMK58_20630 PF17850 CysA C-terminal regulatory domain AMK58_20635 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_20640 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_20655 PF02082 Transcriptional regulator AMK58_20660 PF00753 Metallo-beta-lactamase superfamily AMK58_20670 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_20675 PF00474 Sodium:solute symporter family AMK58_20700 PF00919 Uncharacterized protein family UPF0004 AMK58_20700 PF04055 Radical SAM superfamily AMK58_20705 PF05974 Domain of unknown function (DUF892) AMK58_20715 PF10503 Esterase PHB depolymerase AMK58_20740 PF03741 Integral membrane protein TerC family AMK58_20755 PF00593 TonB dependent receptor AMK58_20755 PF07715 TonB-dependent Receptor Plug Domain AMK58_20765 PF01032 FecCD transport family AMK58_20770 PF00005 ABC transporter AMK58_20810 PF00072 Response regulator receiver domain AMK58_20815 PF00072 Response regulator receiver domain AMK58_20815 PF01627 Hpt domain AMK58_20815 PF00512 His Kinase A (phospho-acceptor) domain AMK58_20815 PF00672 HAMP domain AMK58_20815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMK58_20815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_20830 PF03551 Transcriptional regulator PadR-like family AMK58_20835 PF01497 Periplasmic binding protein AMK58_20840 PF01032 FecCD transport family AMK58_20845 PF01032 FecCD transport family AMK58_20850 PF00005 ABC transporter AMK58_20855 PF01070 FMN-dependent dehydrogenase AMK58_20865 PF13640 2OG-Fe(II) oxygenase superfamily AMK58_20865 PF18331 PKHD-type hydroxylase C-terminal domain AMK58_20870 PF00593 TonB dependent receptor AMK58_20870 PF07715 TonB-dependent Receptor Plug Domain AMK58_20875 PF02885 Glycosyl transferase family, helical bundle domain AMK58_20875 PF00591 Glycosyl transferase family, a/b domain AMK58_20890 PF01569 PAP2 superfamily AMK58_20895 PF05221 S-adenosyl-L-homocysteine hydrolase AMK58_20895 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMK58_20905 PF01430 Hsp33 protein AMK58_20910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMK58_20910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMK58_20915 PF00202 Aminotransferase class-III AMK58_20920 PF01061 ABC-2 type transporter AMK58_20925 PF02631 RecX family AMK58_20935 PF00830 Ribosomal L28 family AMK58_20955 PF00005 ABC transporter AMK58_20955 PF00664 ABC transporter transmembrane region AMK58_20975 PF03591 AzlC protein AMK58_20980 PF03006 Haemolysin-III related AMK58_20985 PF02861 Clp amino terminal domain, pathogenicity island component AMK58_20985 PF17871 AAA lid domain AMK58_20985 PF07724 AAA domain (Cdc48 subfamily) AMK58_20985 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_20985 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_20990 PF00293 NUDIX domain AMK58_20990 PF13344 Haloacid dehalogenase-like hydrolase AMK58_21005 PF13847 Methyltransferase domain AMK58_21005 PF17827 PrmC N-terminal domain AMK58_21010 PF04480 Protein of unknown function (DUF559) AMK58_21015 PF00472 RF-1 domain AMK58_21015 PF03462 PCRF domain AMK58_21020 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMK58_21020 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMK58_21020 PF01488 Shikimate / quinate 5-dehydrogenase AMK58_21025 PF04551 GcpE protein AMK58_21035 PF01590 GAF domain AMK58_21035 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_21035 PF00391 PEP-utilising enzyme, mobile domain AMK58_21035 PF05524 PEP-utilising enzyme, N-terminal AMK58_21040 PF03060 Nitronate monooxygenase AMK58_21045 PF13840 ACT domain AMK58_21045 PF01842 ACT domain AMK58_21045 PF00696 Amino acid kinase family AMK58_21050 PF08241 Methyltransferase domain AMK58_21055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMK58_21060 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AMK58_21060 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMK58_21065 PF04552 Sigma-54, DNA binding domain AMK58_21065 PF04963 Sigma-54 factor, core binding domain AMK58_21065 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMK58_21070 PF00005 ABC transporter AMK58_21085 PF00571 CBS domain AMK58_21085 PF01380 SIS domain AMK58_21090 PF00570 HRDC domain AMK58_21090 PF01612 3'-5' exonuclease AMK58_21100 PF04321 RmlD substrate binding domain AMK58_21105 PF07690 Major Facilitator Superfamily AMK58_21110 PF02673 Bacitracin resistance protein BacA AMK58_21115 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMK58_21115 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_21120 PF00310 Glutamine amidotransferases class-II AMK58_21120 PF04898 Glutamate synthase central domain AMK58_21120 PF01645 Conserved region in glutamate synthase AMK58_21120 PF01493 GXGXG motif AMK58_21130 PF13417 Glutathione S-transferase, N-terminal domain AMK58_21130 PF00043 Glutathione S-transferase, C-terminal domain AMK58_21145 PF02417 Chromate transporter AMK58_21150 PF00672 HAMP domain AMK58_21150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_21150 PF00512 His Kinase A (phospho-acceptor) domain AMK58_21155 PF00072 Response regulator receiver domain AMK58_21155 PF00486 Transcriptional regulatory protein, C terminal AMK58_21195 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_21200 PF00005 ABC transporter AMK58_21220 PF01546 Peptidase family M20/M25/M40 AMK58_21220 PF07687 Peptidase dimerisation domain AMK58_21225 PF01292 Prokaryotic cytochrome b561 AMK58_21230 PF13247 4Fe-4S dicluster domain AMK58_21235 PF01568 Molydopterin dinucleotide binding domain AMK58_21235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_21235 PF00384 Molybdopterin oxidoreductase AMK58_21270 PF02445 Quinolinate synthetase A protein AMK58_21275 PF00890 FAD binding domain AMK58_21275 PF02910 Fumarate reductase flavoprotein C-term AMK58_21280 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMK58_21280 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMK58_21285 PF03275 UDP-galactopyranose mutase AMK58_21290 PF00478 IMP dehydrogenase / GMP reductase domain AMK58_21295 PF01546 Peptidase family M20/M25/M40 AMK58_21295 PF07687 Peptidase dimerisation domain AMK58_21300 PF07687 Peptidase dimerisation domain AMK58_21300 PF01546 Peptidase family M20/M25/M40 AMK58_21305 PF01014 Uricase AMK58_21305 PF09349 OHCU decarboxylase AMK58_21310 PF00576 HIUase/Transthyretin family AMK58_21320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_21320 PF03466 LysR substrate binding domain AMK58_21325 PF00356 Bacterial regulatory proteins, lacI family AMK58_21325 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMK58_21330 PF12826 Helix-hairpin-helix motif AMK58_21330 PF02151 UvrB/uvrC motif AMK58_21330 PF08459 UvrC Helix-hairpin-helix N-terminal AMK58_21330 PF01541 GIY-YIG catalytic domain AMK58_21365 PF11842 Domain of unknown function (DUF3362) AMK58_21365 PF08497 Radical SAM N-terminal AMK58_21365 PF04055 Radical SAM superfamily AMK58_21375 PF00877 NlpC/P60 family AMK58_21380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_21380 PF14824 Sirohaem biosynthesis protein central AMK58_21380 PF10414 Sirohaem synthase dimerisation region AMK58_21385 PF01568 Molydopterin dinucleotide binding domain AMK58_21385 PF00384 Molybdopterin oxidoreductase AMK58_21385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_21385 PF04324 BFD-like [2Fe-2S] binding domain AMK58_21390 PF00355 Rieske [2Fe-2S] domain AMK58_21395 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMK58_21395 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMK58_21395 PF04324 BFD-like [2Fe-2S] binding domain AMK58_21395 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMK58_21395 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_21405 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_21410 PF00005 ABC transporter AMK58_21415 PF03861 ANTAR domain AMK58_21415 PF08376 Nitrate and nitrite sensing AMK58_21430 PF01042 Endoribonuclease L-PSP AMK58_21435 PF03466 LysR substrate binding domain AMK58_21435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_21450 PF17762 HTH domain found in ParB protein AMK58_21450 PF02195 ParB-like nuclease domain AMK58_21455 PF13614 AAA domain AMK58_21465 PF00089 Trypsin AMK58_21475 PF00149 Calcineurin-like phosphoesterase AMK58_21475 PF12320 Type 5 capsule protein repressor C-terminal domain AMK58_21515 PF01361 Tautomerase enzyme AMK58_21520 PF00596 Class II Aldolase and Adducin N-terminal domain AMK58_21525 PF00072 Response regulator receiver domain AMK58_21525 PF00158 Sigma-54 interaction domain AMK58_21525 PF02954 Bacterial regulatory protein, Fis family AMK58_21530 PF13188 PAS domain AMK58_21530 PF08448 PAS fold AMK58_21530 PF00072 Response regulator receiver domain AMK58_21530 PF00512 His Kinase A (phospho-acceptor) domain AMK58_21530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_21535 PF04216 Protein involved in formate dehydrogenase formation AMK58_21540 PF00384 Molybdopterin oxidoreductase AMK58_21540 PF01568 Molydopterin dinucleotide binding domain AMK58_21540 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_21545 PF09163 Formate dehydrogenase N, transmembrane AMK58_21545 PF13247 4Fe-4S dicluster domain AMK58_21550 PF01292 Prokaryotic cytochrome b561 AMK58_21555 PF02634 FdhD/NarQ family AMK58_21560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_21560 PF00512 His Kinase A (phospho-acceptor) domain AMK58_21565 PF00072 Response regulator receiver domain AMK58_21565 PF00486 Transcriptional regulatory protein, C terminal AMK58_21570 PF01339 CheB methylesterase AMK58_21570 PF00072 Response regulator receiver domain AMK58_21575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_21575 PF01627 Hpt domain AMK58_21575 PF01584 CheW-like domain AMK58_21575 PF00072 Response regulator receiver domain AMK58_21580 PF02203 Tar ligand binding domain homologue AMK58_21580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_21580 PF00672 HAMP domain AMK58_21590 PF01739 CheR methyltransferase, SAM binding domain AMK58_21590 PF03705 CheR methyltransferase, all-alpha domain AMK58_21600 PF02261 Aspartate decarboxylase AMK58_21620 PF01209 ubiE/COQ5 methyltransferase family AMK58_21625 PF03975 CheD chemotactic sensory transduction AMK58_21630 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AMK58_21700 PF02386 Cation transport protein AMK58_21705 PF03706 Lysylphosphatidylglycerol synthase TM region AMK58_21715 PF02028 BCCT, betaine/carnitine/choline family transporter AMK58_21720 PF03707 Bacterial signalling protein N terminal repeat AMK58_21720 PF00990 Diguanylate cyclase, GGDEF domain AMK58_21720 PF00563 EAL domain AMK58_21730 PF13456 Reverse transcriptase-like AMK58_21730 PF00300 Histidine phosphatase superfamily (branch 1) AMK58_21735 PF01256 Carbohydrate kinase AMK58_21745 PF07690 Major Facilitator Superfamily AMK58_21745 PF00083 Sugar (and other) transporter AMK58_21750 PF06481 COX Aromatic Rich Motif AMK58_21750 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMK58_21755 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_21760 PF00510 Cytochrome c oxidase subunit III AMK58_21765 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMK58_21775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_21775 PF00512 His Kinase A (phospho-acceptor) domain AMK58_21780 PF00072 Response regulator receiver domain AMK58_21790 PF00216 Bacterial DNA-binding protein AMK58_21795 PF03264 NapC/NirT cytochrome c family, N-terminal region AMK58_21800 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AMK58_21805 PF00384 Molybdopterin oxidoreductase AMK58_21805 PF01568 Molydopterin dinucleotide binding domain AMK58_21805 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_21820 PF06796 Periplasmic nitrate reductase protein NapE AMK58_21830 PF07690 Major Facilitator Superfamily AMK58_21840 PF01027 Inhibitor of apoptosis-promoting Bax1 AMK58_21850 PF08281 Sigma-70, region 4 AMK58_21850 PF04542 Sigma-70 region 2 AMK58_21855 PF00216 Bacterial DNA-binding protein AMK58_21865 PF00158 Sigma-54 interaction domain AMK58_21865 PF00072 Response regulator receiver domain AMK58_21865 PF02954 Bacterial regulatory protein, Fis family AMK58_21870 PF00325 Bacterial regulatory proteins, crp family AMK58_21870 PF00027 Cyclic nucleotide-binding domain AMK58_21875 PF07005 Sugar-binding N-terminal domain AMK58_21875 PF17042 Nucleotide-binding C-terminal domain AMK58_21880 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AMK58_21880 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AMK58_21890 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_21895 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_21900 PF00356 Bacterial regulatory proteins, lacI family AMK58_21905 PF00892 EamA-like transporter family AMK58_21910 PF05853 beta-keto acid cleavage enzyme AMK58_21915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_21915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_21920 PF00850 Histone deacetylase domain AMK58_21925 PF01546 Peptidase family M20/M25/M40 AMK58_21925 PF07687 Peptidase dimerisation domain AMK58_21935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_21935 PF00005 ABC transporter AMK58_21940 PF12911 N-terminal TM domain of oligopeptide transport permease C AMK58_21940 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_21945 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_21950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_21955 PF07687 Peptidase dimerisation domain AMK58_21955 PF01546 Peptidase family M20/M25/M40 AMK58_21960 PF03466 LysR substrate binding domain AMK58_21960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_21985 PF00534 Glycosyl transferases group 1 AMK58_21985 PF13579 Glycosyl transferase 4-like domain AMK58_21995 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMK58_21995 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMK58_22000 PF02706 Chain length determinant protein AMK58_22000 PF13614 AAA domain AMK58_22000 PF13807 G-rich domain on putative tyrosine kinase AMK58_22005 PF01370 NAD dependent epimerase/dehydratase family AMK58_22010 PF02397 Bacterial sugar transferase AMK58_22020 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMK58_22030 PF16363 GDP-mannose 4,6 dehydratase AMK58_22035 PF16363 GDP-mannose 4,6 dehydratase AMK58_22050 PF00196 Bacterial regulatory proteins, luxR family AMK58_22050 PF00072 Response regulator receiver domain AMK58_22055 PF00072 Response regulator receiver domain AMK58_22055 PF00196 Bacterial regulatory proteins, luxR family AMK58_22060 PF00072 Response regulator receiver domain AMK58_22060 PF00196 Bacterial regulatory proteins, luxR family AMK58_22070 PF00723 Glycosyl hydrolases family 15 AMK58_22080 PF17770 Ribonuclease J C-terminal domain AMK58_22080 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMK58_22080 PF12706 Beta-lactamase superfamily domain AMK58_22095 PF01209 ubiE/COQ5 methyltransferase family AMK58_22110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_22110 PF00512 His Kinase A (phospho-acceptor) domain AMK58_22110 PF09308 LuxQ, periplasmic AMK58_22110 PF00072 Response regulator receiver domain AMK58_22115 PF01425 Amidase AMK58_22125 PF00576 HIUase/Transthyretin family AMK58_22130 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_22135 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_22140 PF13416 Bacterial extracellular solute-binding protein AMK58_22145 PF00005 ABC transporter AMK58_22145 PF08402 TOBE domain AMK58_22155 PF00392 Bacterial regulatory proteins, gntR family AMK58_22155 PF07729 FCD domain AMK58_22165 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_22170 PF00005 ABC transporter AMK58_22175 PF01979 Amidohydrolase family AMK58_22185 PF01979 Amidohydrolase family AMK58_22190 PF01425 Amidase AMK58_22200 PF00672 HAMP domain AMK58_22200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_22205 PF00501 AMP-binding enzyme AMK58_22205 PF13193 AMP-binding enzyme C-terminal domain AMK58_22210 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_22215 PF00005 ABC transporter AMK58_22215 PF08402 TOBE domain AMK58_22225 PF00378 Enoyl-CoA hydratase/isomerase AMK58_22230 PF09339 IclR helix-turn-helix domain AMK58_22230 PF01614 Bacterial transcriptional regulator AMK58_22315 PF08714 Formaldehyde-activating enzyme (Fae) AMK58_22325 PF08443 RimK-like ATP-grasp domain AMK58_22325 PF18030 RimK PreATP-grasp domain AMK58_22330 PF02289 Cyclohydrolase (MCH) AMK58_22340 PF09176 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal AMK58_22350 PF01329 Pterin 4 alpha carbinolamine dehydratase AMK58_22360 PF07969 Amidohydrolase family AMK58_22365 PF02741 FTR, proximal lobe AMK58_22365 PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase AMK58_22385 PF00005 ABC transporter AMK58_22405 PF04476 4-HFC-P synthase AMK58_22445 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_22450 PF13360 PQQ-like domain AMK58_22465 PF03167 Uracil DNA glycosylase superfamily AMK58_22490 PF03466 LysR substrate binding domain AMK58_22490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_22495 PF02515 CoA-transferase family III AMK58_22525 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_22530 PF08402 TOBE domain AMK58_22530 PF00005 ABC transporter AMK58_22535 PF00378 Enoyl-CoA hydratase/isomerase AMK58_22560 PF02566 OsmC-like protein AMK58_22565 PF00550 Phosphopantetheine attachment site AMK58_22570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_22570 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_22570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_22645 PF00924 Mechanosensitive ion channel AMK58_22665 PF00512 His Kinase A (phospho-acceptor) domain AMK58_22665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_22680 PF02589 LUD domain AMK58_22685 PF13183 4Fe-4S dicluster domain AMK58_22685 PF02589 LUD domain AMK58_22685 PF11870 Domain of unknown function (DUF3390) AMK58_22690 PF02754 Cysteine-rich domain AMK58_22695 PF01565 FAD binding domain AMK58_22695 PF02913 FAD linked oxidases, C-terminal domain AMK58_22700 PF02652 L-lactate permease AMK58_22705 PF00392 Bacterial regulatory proteins, gntR family AMK58_22705 PF07729 FCD domain AMK58_22720 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_22720 PF07724 AAA domain (Cdc48 subfamily) AMK58_22720 PF02861 Clp amino terminal domain, pathogenicity island component AMK58_22720 PF17871 AAA lid domain AMK58_22720 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_22725 PF09339 IclR helix-turn-helix domain AMK58_22725 PF01614 Bacterial transcriptional regulator AMK58_22730 PF05035 2-keto-3-deoxy-galactonokinase AMK58_22735 PF01081 KDPG and KHG aldolase AMK58_22740 PF03401 Tripartite tricarboxylate transporter family receptor AMK58_22750 PF01970 Tripartite tricarboxylate transporter TctA family AMK58_22770 PF00072 Response regulator receiver domain AMK58_22775 PF00072 Response regulator receiver domain AMK58_22780 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMK58_22780 PF00672 HAMP domain AMK58_22780 PF01627 Hpt domain AMK58_22780 PF00072 Response regulator receiver domain AMK58_22780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_22780 PF00512 His Kinase A (phospho-acceptor) domain AMK58_22785 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_22790 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_22810 PF00672 HAMP domain AMK58_22810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_22825 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMK58_22825 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMK58_22830 PF00512 His Kinase A (phospho-acceptor) domain AMK58_22830 PF00989 PAS fold AMK58_22830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_22835 PF00072 Response regulator receiver domain AMK58_22835 PF00196 Bacterial regulatory proteins, luxR family AMK58_22840 PF03544 Gram-negative bacterial TonB protein C-terminal AMK58_22845 PF02472 Biopolymer transport protein ExbD/TolR AMK58_22850 PF01618 MotA/TolQ/ExbB proton channel family AMK58_22870 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMK58_22870 PF00413 Matrixin AMK58_22870 PF08548 Peptidase M10 serralysin C terminal AMK58_22875 PF03330 Lytic transglycolase AMK58_22875 PF05036 Sporulation related domain AMK58_22885 PF07694 5TMR of 5TMR-LYT AMK58_22885 PF06580 Histidine kinase AMK58_22890 PF04397 LytTr DNA-binding domain AMK58_22890 PF00072 Response regulator receiver domain AMK58_22895 PF02554 Carbon starvation protein CstA AMK58_22895 PF13722 5TM C-terminal transporter carbon starvation CstA AMK58_22905 PF05343 M42 glutamyl aminopeptidase AMK58_22910 PF18419 ATP-grasp-like domain AMK58_22910 PF04262 Glutamate-cysteine ligase AMK58_22910 PF02655 ATP-grasp domain AMK58_22915 PF13537 Glutamine amidotransferase domain AMK58_22915 PF00733 Asparagine synthase AMK58_22920 PF00392 Bacterial regulatory proteins, gntR family AMK58_22920 PF00155 Aminotransferase class I and II AMK58_22940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_22940 PF03466 LysR substrate binding domain AMK58_22945 PF00202 Aminotransferase class-III AMK58_22950 PF00171 Aldehyde dehydrogenase family AMK58_22955 PF07729 FCD domain AMK58_22955 PF00392 Bacterial regulatory proteins, gntR family AMK58_22960 PF01769 Divalent cation transporter AMK58_22960 PF03448 MgtE intracellular N domain AMK58_22960 PF00571 CBS domain AMK58_22970 PF03741 Integral membrane protein TerC family AMK58_22975 PF01970 Tripartite tricarboxylate transporter TctA family AMK58_23015 PF00534 Glycosyl transferases group 1 AMK58_23015 PF13439 Glycosyltransferase Family 4 AMK58_23030 PF08241 Methyltransferase domain AMK58_23050 PF00529 HlyD membrane-fusion protein of T1SS AMK58_23050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMK58_23055 PF00664 ABC transporter transmembrane region AMK58_23055 PF00005 ABC transporter AMK58_23060 PF16363 GDP-mannose 4,6 dehydratase AMK58_23065 PF12802 MarR family AMK58_23075 PF00440 Bacterial regulatory proteins, tetR family AMK58_23075 PF08361 MAATS-type transcriptional repressor, C-terminal region AMK58_23080 PF13193 AMP-binding enzyme C-terminal domain AMK58_23080 PF00501 AMP-binding enzyme AMK58_23085 PF00392 Bacterial regulatory proteins, gntR family AMK58_23085 PF07729 FCD domain AMK58_23090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_23090 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_23090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_23095 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMK58_23095 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_23100 PF00756 Putative esterase AMK58_23100 PF11806 Domain of unknown function (DUF3327) AMK58_23105 PF00501 AMP-binding enzyme AMK58_23105 PF13193 AMP-binding enzyme C-terminal domain AMK58_23105 PF00550 Phosphopantetheine attachment site AMK58_23105 PF00975 Thioesterase domain AMK58_23105 PF00668 Condensation domain AMK58_23120 PF00857 Isochorismatase family AMK58_23120 PF00550 Phosphopantetheine attachment site AMK58_23125 PF13193 AMP-binding enzyme C-terminal domain AMK58_23125 PF00501 AMP-binding enzyme AMK58_23130 PF00425 chorismate binding enzyme AMK58_23135 PF00873 AcrB/AcrD/AcrF family AMK58_23145 PF05977 Transmembrane secretion effector AMK58_23150 PF00593 TonB dependent receptor AMK58_23150 PF07715 TonB-dependent Receptor Plug Domain AMK58_23170 PF00072 Response regulator receiver domain AMK58_23170 PF01339 CheB methylesterase AMK58_23175 PF00072 Response regulator receiver domain AMK58_23175 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMK58_23175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23175 PF01627 Hpt domain AMK58_23175 PF00672 HAMP domain AMK58_23175 PF00512 His Kinase A (phospho-acceptor) domain AMK58_23180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_23185 PF13193 AMP-binding enzyme C-terminal domain AMK58_23185 PF00501 AMP-binding enzyme AMK58_23190 PF00005 ABC transporter AMK58_23190 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_23195 PF00501 AMP-binding enzyme AMK58_23200 PF02653 Branched-chain amino acid transport system / permease component AMK58_23215 PF00005 ABC transporter AMK58_23220 PF00501 AMP-binding enzyme AMK58_23220 PF13193 AMP-binding enzyme C-terminal domain AMK58_23225 PF00171 Aldehyde dehydrogenase family AMK58_23230 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_23230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_23230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_23235 PF00108 Thiolase, N-terminal domain AMK58_23235 PF02803 Thiolase, C-terminal domain AMK58_23240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_23240 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_23240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_23245 PF01039 Carboxyl transferase domain AMK58_23250 PF00378 Enoyl-CoA hydratase/isomerase AMK58_23255 PF00364 Biotin-requiring enzyme AMK58_23255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMK58_23255 PF00289 Biotin carboxylase, N-terminal domain AMK58_23255 PF02785 Biotin carboxylase C-terminal domain AMK58_23260 PF00682 HMGL-like AMK58_23275 PF00106 short chain dehydrogenase AMK58_23285 PF00756 Putative esterase AMK58_23290 PF01596 O-methyltransferase AMK58_23295 PF01522 Polysaccharide deacetylase AMK58_23300 PF05443 ROS/MUCR transcriptional regulator protein AMK58_23305 PF00232 Glycosyl hydrolase family 1 AMK58_23310 PF00232 Glycosyl hydrolase family 1 AMK58_23320 PF00005 ABC transporter AMK58_23320 PF06472 ABC transporter transmembrane region 2 AMK58_23330 PF01501 Glycosyl transferase family 8 AMK58_23330 PF00535 Glycosyl transferase family 2 AMK58_23340 PF07690 Major Facilitator Superfamily AMK58_23345 PF13533 Biotin-lipoyl like AMK58_23350 PF02627 Carboxymuconolactone decarboxylase family AMK58_23360 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_23400 PF01476 LysM domain AMK58_23400 PF08525 Opacity-associated protein A N-terminal motif AMK58_23400 PF01551 Peptidase family M23 AMK58_23410 PF01618 MotA/TolQ/ExbB proton channel family AMK58_23415 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AMK58_23415 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AMK58_23425 PF00486 Transcriptional regulatory protein, C terminal AMK58_23425 PF00072 Response regulator receiver domain AMK58_23430 PF00672 HAMP domain AMK58_23430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23430 PF00512 His Kinase A (phospho-acceptor) domain AMK58_23430 PF13756 Stimulus-sensing domain AMK58_23430 PF13755 Sensor N-terminal transmembrane domain AMK58_23440 PF07475 HPr Serine kinase C-terminal domain AMK58_23440 PF02603 HPr Serine kinase N terminus AMK58_23445 PF03668 P-loop ATPase protein family AMK58_23450 PF03610 PTS system fructose IIA component AMK58_23450 PF03830 PTS system sorbose subfamily IIB component AMK58_23455 PF00381 PTS HPr component phosphorylation site AMK58_23460 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_23460 PF00391 PEP-utilising enzyme, mobile domain AMK58_23460 PF05524 PEP-utilising enzyme, N-terminal AMK58_23465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_23465 PF03466 LysR substrate binding domain AMK58_23475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_23480 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23490 PF00005 ABC transporter AMK58_23490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_23495 PF01042 Endoribonuclease L-PSP AMK58_23500 PF00491 Arginase family AMK58_23505 PF07687 Peptidase dimerisation domain AMK58_23505 PF01546 Peptidase family M20/M25/M40 AMK58_23515 PF13419 Haloacid dehalogenase-like hydrolase AMK58_23520 PF08402 TOBE domain AMK58_23520 PF00005 ABC transporter AMK58_23525 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23535 PF02080 TrkA-C domain AMK58_23535 PF06826 Predicted Permease Membrane Region AMK58_23540 PF00155 Aminotransferase class I and II AMK58_23545 PF00158 Sigma-54 interaction domain AMK58_23545 PF02954 Bacterial regulatory protein, Fis family AMK58_23545 PF00072 Response regulator receiver domain AMK58_23550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23550 PF00512 His Kinase A (phospho-acceptor) domain AMK58_23550 PF02743 Cache domain AMK58_23565 PF00232 Glycosyl hydrolase family 1 AMK58_23570 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMK58_23570 PF02056 Family 4 glycosyl hydrolase AMK58_23575 PF00430 ATP synthase B/B' CF(0) AMK58_23575 PF11154 Protein of unknown function (DUF2934) AMK58_23585 PF07687 Peptidase dimerisation domain AMK58_23585 PF01546 Peptidase family M20/M25/M40 AMK58_23595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23595 PF07568 Histidine kinase AMK58_23595 PF12282 Signal transduction histidine kinase AMK58_23600 PF00072 Response regulator receiver domain AMK58_23600 PF00196 Bacterial regulatory proteins, luxR family AMK58_23610 PF01627 Hpt domain AMK58_23610 PF02895 Signal transducing histidine kinase, homodimeric domain AMK58_23610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23610 PF07194 P2 response regulator binding domain AMK58_23610 PF01584 CheW-like domain AMK58_23615 PF00072 Response regulator receiver domain AMK58_23615 PF00990 Diguanylate cyclase, GGDEF domain AMK58_23620 PF03705 CheR methyltransferase, all-alpha domain AMK58_23620 PF01739 CheR methyltransferase, SAM binding domain AMK58_23630 PF01339 CheB methylesterase AMK58_23630 PF00072 Response regulator receiver domain AMK58_23635 PF01584 CheW-like domain AMK58_23640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_23640 PF00672 HAMP domain AMK58_23640 PF02743 Cache domain AMK58_23655 PF01914 MarC family integral membrane protein AMK58_23665 PF00285 Citrate synthase, C-terminal domain AMK58_23685 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMK58_23685 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMK58_23700 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23705 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23710 PF00005 ABC transporter AMK58_23710 PF17912 MalK OB fold domain AMK58_23715 PF08402 TOBE domain AMK58_23715 PF00005 ABC transporter AMK58_23720 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMK58_23720 PF01266 FAD dependent oxidoreductase AMK58_23725 PF09335 SNARE associated Golgi protein AMK58_23735 PF00550 Phosphopantetheine attachment site AMK58_23735 PF00975 Thioesterase domain AMK58_23735 PF00668 Condensation domain AMK58_23735 PF13193 AMP-binding enzyme C-terminal domain AMK58_23735 PF00501 AMP-binding enzyme AMK58_23745 PF00005 ABC transporter AMK58_23750 PF00664 ABC transporter transmembrane region AMK58_23750 PF00005 ABC transporter AMK58_23755 PF00975 Thioesterase domain AMK58_23775 PF00672 HAMP domain AMK58_23775 PF12729 Four helix bundle sensory module for signal transduction AMK58_23775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_23780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_23780 PF02743 Cache domain AMK58_23780 PF00672 HAMP domain AMK58_23785 PF00034 Cytochrome c AMK58_23795 PF00072 Response regulator receiver domain AMK58_23795 PF00196 Bacterial regulatory proteins, luxR family AMK58_23800 PF00072 Response regulator receiver domain AMK58_23800 PF00512 His Kinase A (phospho-acceptor) domain AMK58_23800 PF09308 LuxQ, periplasmic AMK58_23800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23805 PF13426 PAS domain AMK58_23805 PF00072 Response regulator receiver domain AMK58_23820 PF14542 GCN5-related N-acetyl-transferase AMK58_23825 PF00128 Alpha amylase, catalytic domain AMK58_23855 PF17202 Single cache domain 3 AMK58_23855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_23855 PF00672 HAMP domain AMK58_23860 PF02659 Putative manganese efflux pump AMK58_23890 PF01596 O-methyltransferase AMK58_23895 PF00501 AMP-binding enzyme AMK58_23895 PF01553 Acyltransferase AMK58_23900 PF00440 Bacterial regulatory proteins, tetR family AMK58_23900 PF17932 Tetracyclin repressor-like, C-terminal domain AMK58_23905 PF01546 Peptidase family M20/M25/M40 AMK58_23905 PF07687 Peptidase dimerisation domain AMK58_23910 PF01266 FAD dependent oxidoreductase AMK58_23925 PF02653 Branched-chain amino acid transport system / permease component AMK58_23930 PF11862 Domain of unknown function (DUF3382) AMK58_23930 PF02653 Branched-chain amino acid transport system / permease component AMK58_23935 PF00005 ABC transporter AMK58_23935 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_23940 PF00005 ABC transporter AMK58_23950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_23950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_23950 PF08447 PAS fold AMK58_23950 PF08447 PAS fold AMK58_23955 PF03358 NADPH-dependent FMN reductase AMK58_23965 PF08220 DeoR-like helix-turn-helix domain AMK58_23965 PF00455 DeoR C terminal sensor domain AMK58_23970 PF00005 ABC transporter AMK58_23970 PF17912 MalK OB fold domain AMK58_23975 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23980 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23985 PF01547 Bacterial extracellular solute-binding protein AMK58_23990 PF08241 Methyltransferase domain AMK58_23995 PF13614 AAA domain AMK58_24000 PF02195 ParB-like nuclease domain AMK58_24000 PF17762 HTH domain found in ParB protein AMK58_24020 PF00106 short chain dehydrogenase AMK58_24025 PF01757 Acyltransferase family AMK58_24035 PF01380 SIS domain AMK58_24040 PF01594 AI-2E family transporter AMK58_24050 PF00873 AcrB/AcrD/AcrF family AMK58_24055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMK58_24060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMK58_24065 PF00871 Acetokinase family AMK58_24070 PF01515 Phosphate acetyl/butaryl transferase AMK58_24080 PF11339 Protein of unknown function (DUF3141) AMK58_24125 PF03976 Polyphosphate kinase 2 (PPK2) AMK58_24145 PF10672 S-adenosylmethionine-dependent methyltransferase AMK58_24145 PF01170 Putative RNA methylase family UPF0020 AMK58_24145 PF02926 THUMP domain AMK58_24150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_24150 PF00384 Molybdopterin oxidoreductase AMK58_24150 PF01568 Molydopterin dinucleotide binding domain AMK58_24175 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AMK58_24175 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AMK58_24180 PF00155 Aminotransferase class I and II AMK58_24185 PF13533 Biotin-lipoyl like AMK58_24190 PF00873 AcrB/AcrD/AcrF family AMK58_24195 PF00873 AcrB/AcrD/AcrF family AMK58_24200 PF02321 Outer membrane efflux protein AMK58_24210 PF00512 His Kinase A (phospho-acceptor) domain AMK58_24210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_24210 PF00989 PAS fold AMK58_24215 PF00072 Response regulator receiver domain AMK58_24215 PF00196 Bacterial regulatory proteins, luxR family AMK58_24220 PF00196 Bacterial regulatory proteins, luxR family AMK58_24220 PF00072 Response regulator receiver domain AMK58_24235 PF04264 YceI-like domain AMK58_24240 PF00027 Cyclic nucleotide-binding domain AMK58_24240 PF13545 Crp-like helix-turn-helix domain AMK58_24245 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_24250 PF03741 Integral membrane protein TerC family AMK58_24255 PF00072 Response regulator receiver domain AMK58_24255 PF00486 Transcriptional regulatory protein, C terminal AMK58_24260 PF13493 Domain of unknown function (DUF4118) AMK58_24260 PF13492 GAF domain AMK58_24260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_24260 PF00512 His Kinase A (phospho-acceptor) domain AMK58_24260 PF02702 Osmosensitive K+ channel His kinase sensor domain AMK58_24265 PF02669 K+-transporting ATPase, c chain AMK58_24275 PF03814 Potassium-transporting ATPase A subunit AMK58_24285 PF00392 Bacterial regulatory proteins, gntR family AMK58_24285 PF07729 FCD domain AMK58_24290 PF05145 Transition state regulatory protein AbrB AMK58_24295 PF00857 Isochorismatase family AMK58_24300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_24300 PF00005 ABC transporter AMK58_24305 PF00005 ABC transporter AMK58_24305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_24320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_24325 PF00857 Isochorismatase family AMK58_24330 PF01425 Amidase AMK58_24335 PF01425 Amidase AMK58_24340 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMK58_24345 PF01061 ABC-2 type transporter AMK58_24350 PF00005 ABC transporter AMK58_24355 PF01966 HD domain AMK58_24375 PF05661 Protein of unknown function (DUF808) AMK58_24380 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_24385 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_24385 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMK58_24390 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_24395 PF00392 Bacterial regulatory proteins, gntR family AMK58_24395 PF07729 FCD domain AMK58_24400 PF03466 LysR substrate binding domain AMK58_24400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_24410 PF01037 Lrp/AsnC ligand binding domain AMK58_24420 PF02082 Transcriptional regulator AMK58_24430 PF00571 CBS domain AMK58_24430 PF02163 Peptidase family M50 AMK58_24440 PF01063 Amino-transferase class IV AMK58_24445 PF04715 Anthranilate synthase component I, N terminal region AMK58_24445 PF00425 chorismate binding enzyme AMK58_24460 PF00085 Thioredoxin AMK58_24465 PF00196 Bacterial regulatory proteins, luxR family AMK58_24465 PF00072 Response regulator receiver domain AMK58_24470 PF00512 His Kinase A (phospho-acceptor) domain AMK58_24470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_24475 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_24490 PF00873 AcrB/AcrD/AcrF family AMK58_24495 PF00581 Rhodanese-like domain AMK58_24500 PF01022 Bacterial regulatory protein, arsR family AMK58_24510 PF08281 Sigma-70, region 4 AMK58_24510 PF04542 Sigma-70 region 2 AMK58_24550 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMK58_24550 PF14850 DNA-binding domain of Proline dehydrogenase AMK58_24550 PF01619 Proline dehydrogenase AMK58_24550 PF00171 Aldehyde dehydrogenase family AMK58_24555 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMK58_24555 PF03807 NADP oxidoreductase coenzyme F420-dependent AMK58_24560 PF01037 Lrp/AsnC ligand binding domain AMK58_24570 PF00535 Glycosyl transferase family 2 AMK58_24595 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMK58_24595 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMK58_24595 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMK58_24600 PF02706 Chain length determinant protein AMK58_24600 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_24600 PF13807 G-rich domain on putative tyrosine kinase AMK58_24605 PF04932 O-Antigen ligase AMK58_24620 PF00535 Glycosyl transferase family 2 AMK58_24630 PF01261 Xylose isomerase-like TIM barrel AMK58_24645 PF01566 Natural resistance-associated macrophage protein AMK58_24645 PF03358 NADPH-dependent FMN reductase AMK58_24650 PF01435 Peptidase family M48 AMK58_24655 PF13614 AAA domain AMK58_24660 PF17762 HTH domain found in ParB protein AMK58_24660 PF02195 ParB-like nuclease domain AMK58_24670 PF06472 ABC transporter transmembrane region 2 AMK58_24670 PF00005 ABC transporter AMK58_24675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_24675 PF00672 HAMP domain AMK58_24680 PF00248 Aldo/keto reductase family AMK58_24685 PF03466 LysR substrate binding domain AMK58_24685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_24695 PF13247 4Fe-4S dicluster domain AMK58_24700 PF03916 Polysulphide reductase, NrfD AMK58_24705 PF00384 Molybdopterin oxidoreductase AMK58_24705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_24705 PF01568 Molydopterin dinucleotide binding domain AMK58_24720 PF00005 ABC transporter AMK58_24730 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_24755 PF05962 HutD AMK58_24760 PF01432 Peptidase family M3 AMK58_24765 PF00571 CBS domain AMK58_24765 PF00005 ABC transporter AMK58_24770 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_24775 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMK58_24780 PF17149 Periplasmic sensor domain found in signal transduction proteins AMK58_24780 PF00512 His Kinase A (phospho-acceptor) domain AMK58_24780 PF00672 HAMP domain AMK58_24780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_24780 PF01627 Hpt domain AMK58_24780 PF00072 Response regulator receiver domain AMK58_24785 PF00072 Response regulator receiver domain AMK58_24795 PF02566 OsmC-like protein AMK58_24800 PF01047 MarR family AMK58_24820 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_24825 PF02743 Cache domain AMK58_24825 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_24825 PF00672 HAMP domain AMK58_24845 PF01168 Alanine racemase, N-terminal domain AMK58_24845 PF00842 Alanine racemase, C-terminal domain AMK58_24910 PF03328 HpcH/HpaI aldolase/citrate lyase family AMK58_24920 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_24940 PF04542 Sigma-70 region 2 AMK58_24940 PF08281 Sigma-70, region 4 AMK58_24955 PF00023 Ankyrin repeat AMK58_24955 PF12796 Ankyrin repeats (3 copies) AMK58_24960 PF03466 LysR substrate binding domain AMK58_24960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_24975 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMK58_24985 PF00732 GMC oxidoreductase AMK58_24985 PF05199 GMC oxidoreductase AMK58_24995 PF03275 UDP-galactopyranose mutase AMK58_25005 PF00005 ABC transporter AMK58_25005 PF00664 ABC transporter transmembrane region AMK58_25010 PF13188 PAS domain AMK58_25010 PF08448 PAS fold AMK58_25010 PF00512 His Kinase A (phospho-acceptor) domain AMK58_25010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_25010 PF00072 Response regulator receiver domain AMK58_25015 PF00860 Permease family AMK58_25020 PF13185 GAF domain AMK58_25020 PF00990 Diguanylate cyclase, GGDEF domain AMK58_25030 PF02615 Malate/L-lactate dehydrogenase AMK58_25035 PF01425 Amidase AMK58_25070 PF03150 Di-haem cytochrome c peroxidase AMK58_25090 PF00263 Bacterial type II and III secretion system protein AMK58_25090 PF13629 Pilus formation protein N terminal region AMK58_25090 PF04972 BON domain AMK58_25105 PF00437 Type II/IV secretion system protein AMK58_25200 PF00535 Glycosyl transferase family 2 AMK58_25210 PF01593 Flavin containing amine oxidoreductase AMK58_25215 PF01593 Flavin containing amine oxidoreductase AMK58_25220 PF00171 Aldehyde dehydrogenase family AMK58_25240 PF00924 Mechanosensitive ion channel AMK58_25245 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMK58_25245 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMK58_25255 PF01706 FliG C-terminal domain AMK58_25255 PF14841 FliG middle domain AMK58_25255 PF14842 FliG N-terminal domain AMK58_25265 PF00813 FliP family AMK58_25270 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMK58_25280 PF08345 Flagellar M-ring protein C-terminal AMK58_25280 PF01514 Secretory protein of YscJ/FliF family AMK58_25290 PF02154 Flagellar motor switch protein FliM AMK58_25290 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMK58_25320 PF03264 NapC/NirT cytochrome c family, N-terminal region AMK58_25325 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AMK58_25330 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_25330 PF00384 Molybdopterin oxidoreductase AMK58_25330 PF01568 Molydopterin dinucleotide binding domain AMK58_25350 PF02107 Flagellar L-ring protein AMK58_25355 PF13144 Chaperone for flagella basal body P-ring formation AMK58_25360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_25360 PF00460 Flagella basal body rod protein AMK58_25365 PF00460 Flagella basal body rod protein AMK58_25365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_25375 PF01618 MotA/TolQ/ExbB proton channel family AMK58_25380 PF00691 OmpA family AMK58_25380 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMK58_25385 PF07690 Major Facilitator Superfamily AMK58_25450 PF00158 Sigma-54 interaction domain AMK58_25450 PF02954 Bacterial regulatory protein, Fis family AMK58_25450 PF01590 GAF domain AMK58_25455 PF00171 Aldehyde dehydrogenase family AMK58_25455 PF00465 Iron-containing alcohol dehydrogenase AMK58_25490 PF12802 MarR family AMK58_25505 PF00106 short chain dehydrogenase AMK58_25510 PF02801 Beta-ketoacyl synthase, C-terminal domain AMK58_25510 PF00109 Beta-ketoacyl synthase, N-terminal domain AMK58_25515 PF02801 Beta-ketoacyl synthase, C-terminal domain AMK58_25515 PF00109 Beta-ketoacyl synthase, N-terminal domain AMK58_25545 PF00106 short chain dehydrogenase AMK58_25560 PF00873 AcrB/AcrD/AcrF family AMK58_25565 PF00176 SNF2 family N-terminal domain AMK58_25565 PF00271 Helicase conserved C-terminal domain AMK58_25565 PF12419 SNF2 Helicase protein AMK58_25570 PF03466 LysR substrate binding domain AMK58_25570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_25575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_25575 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_25575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_25580 PF00171 Aldehyde dehydrogenase family AMK58_25605 PF00072 Response regulator receiver domain AMK58_25605 PF13426 PAS domain AMK58_25605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_25610 PF06745 KaiC AMK58_25620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_25620 PF00512 His Kinase A (phospho-acceptor) domain AMK58_25620 PF00989 PAS fold AMK58_25645 PF03601 Conserved hypothetical protein 698 AMK58_25650 PF12833 Helix-turn-helix domain AMK58_25650 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMK58_25650 PF02805 Metal binding domain of Ada AMK58_25650 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMK58_25660 PF13419 Haloacid dehalogenase-like hydrolase AMK58_25680 PF13614 AAA domain AMK58_25685 PF17762 HTH domain found in ParB protein AMK58_25685 PF02195 ParB-like nuclease domain AMK58_25690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_25690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_25690 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_25705 PF12800 4Fe-4S binding domain AMK58_25705 PF13247 4Fe-4S dicluster domain AMK58_25710 PF01568 Molydopterin dinucleotide binding domain AMK58_25710 PF00384 Molybdopterin oxidoreductase AMK58_25710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_25715 PF02629 CoA binding domain AMK58_25715 PF00549 CoA-ligase AMK58_25720 PF08442 ATP-grasp domain AMK58_25720 PF00549 CoA-ligase AMK58_25725 PF00171 Aldehyde dehydrogenase family AMK58_25745 PF01515 Phosphate acetyl/butaryl transferase AMK58_25750 PF01614 Bacterial transcriptional regulator AMK58_25750 PF09339 IclR helix-turn-helix domain AMK58_25755 PF09339 IclR helix-turn-helix domain AMK58_25755 PF01614 Bacterial transcriptional regulator AMK58_25760 PF01037 Lrp/AsnC ligand binding domain AMK58_25765 PF01042 Endoribonuclease L-PSP AMK58_25770 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_25785 PF02653 Branched-chain amino acid transport system / permease component AMK58_25790 PF02653 Branched-chain amino acid transport system / permease component AMK58_25790 PF11862 Domain of unknown function (DUF3382) AMK58_25795 PF00005 ABC transporter AMK58_25795 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_25800 PF00005 ABC transporter AMK58_25815 PF01266 FAD dependent oxidoreductase AMK58_25825 PF00144 Beta-lactamase AMK58_25830 PF03466 LysR substrate binding domain AMK58_25830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_25860 PF00072 Response regulator receiver domain AMK58_25860 PF00196 Bacterial regulatory proteins, luxR family AMK58_25865 PF07568 Histidine kinase AMK58_25865 PF13581 Histidine kinase-like ATPase domain AMK58_25865 PF13426 PAS domain AMK58_25875 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMK58_25880 PF00294 pfkB family carbohydrate kinase AMK58_25885 PF05524 PEP-utilising enzyme, N-terminal AMK58_25885 PF00391 PEP-utilising enzyme, mobile domain AMK58_25885 PF00381 PTS HPr component phosphorylation site AMK58_25885 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMK58_25885 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_25890 PF00356 Bacterial regulatory proteins, lacI family AMK58_25900 PF00857 Isochorismatase family AMK58_25910 PF00561 alpha/beta hydrolase fold AMK58_25915 PF17645 Arylmalonate decarboxylase AMK58_25920 PF01494 FAD binding domain AMK58_25925 PF00005 ABC transporter AMK58_25930 PF00005 ABC transporter AMK58_25930 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_25935 PF11862 Domain of unknown function (DUF3382) AMK58_25935 PF02653 Branched-chain amino acid transport system / permease component AMK58_25940 PF02653 Branched-chain amino acid transport system / permease component AMK58_25945 PF13458 Periplasmic binding protein AMK58_25960 PF01979 Amidohydrolase family AMK58_25980 PF02653 Branched-chain amino acid transport system / permease component AMK58_25990 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_25990 PF00005 ABC transporter AMK58_25995 PF00005 ABC transporter AMK58_26000 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_26000 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_26005 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMK58_26005 PF00941 FAD binding domain in molybdopterin dehydrogenase AMK58_26010 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_26010 PF01799 [2Fe-2S] binding domain AMK58_26020 PF01425 Amidase AMK58_26040 PF00766 Electron transfer flavoprotein FAD-binding domain AMK58_26040 PF01012 Electron transfer flavoprotein domain AMK58_26045 PF01012 Electron transfer flavoprotein domain AMK58_26050 PF02913 FAD linked oxidases, C-terminal domain AMK58_26050 PF01565 FAD binding domain AMK58_26055 PF00171 Aldehyde dehydrogenase family AMK58_26060 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMK58_26060 PF02558 Ketopantoate reductase PanE/ApbA AMK58_26065 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_26075 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_26080 PF16078 2-oxoglutarate dehydrogenase N-terminus AMK58_26080 PF02779 Transketolase, pyrimidine binding domain AMK58_26080 PF16870 2-oxoglutarate dehydrogenase C-terminal AMK58_26080 PF00676 Dehydrogenase E1 component AMK58_26085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_26085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_26085 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_26090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_26090 PF03466 LysR substrate binding domain AMK58_26100 PF02515 CoA-transferase family III AMK58_26105 PF00510 Cytochrome c oxidase subunit III AMK58_26115 PF02222 ATP-grasp domain AMK58_26135 PF00005 ABC transporter AMK58_26140 PF01794 Ferric reductase like transmembrane component AMK58_26145 PF00174 Oxidoreductase molybdopterin binding domain AMK58_26155 PF01081 KDPG and KHG aldolase AMK58_26160 PF00392 Bacterial regulatory proteins, gntR family AMK58_26160 PF07729 FCD domain AMK58_26165 PF00294 pfkB family carbohydrate kinase AMK58_26180 PF00072 Response regulator receiver domain AMK58_26180 PF00486 Transcriptional regulatory protein, C terminal AMK58_26185 PF00669 Bacterial flagellin N-terminal helical region AMK58_26185 PF00700 Bacterial flagellin C-terminal helical region AMK58_26195 PF07378 Flagellar protein FlbT AMK58_26215 PF07690 Major Facilitator Superfamily AMK58_26220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_26220 PF03466 LysR substrate binding domain AMK58_26230 PF18269 T3SS EscN ATPase C-terminal domain AMK58_26230 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMK58_26230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMK58_26235 PF00460 Flagella basal body rod protein AMK58_26240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_26240 PF00460 Flagella basal body rod protein AMK58_26245 PF02049 Flagellar hook-basal body complex protein FliE AMK58_26250 PF01313 Bacterial export proteins, family 3 AMK58_26260 PF00771 FHIPEP family AMK58_26265 PF01311 Bacterial export proteins, family 1 AMK58_26270 PF01312 FlhB HrpN YscU SpaS Family AMK58_26280 PF01037 Lrp/AsnC ligand binding domain AMK58_26290 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_26290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_26290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_26300 PF00512 His Kinase A (phospho-acceptor) domain AMK58_26300 PF00989 PAS fold AMK58_26300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_26310 PF03572 Peptidase family S41 AMK58_26310 PF13180 PDZ domain AMK58_26315 PF03466 LysR substrate binding domain AMK58_26315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_26330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_26335 PF01799 [2Fe-2S] binding domain AMK58_26335 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_26340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_26340 PF03466 LysR substrate binding domain AMK58_26345 PF03707 Bacterial signalling protein N terminal repeat AMK58_26345 PF00563 EAL domain AMK58_26345 PF00990 Diguanylate cyclase, GGDEF domain AMK58_26345 PF13188 PAS domain AMK58_26350 PF00583 Acetyltransferase (GNAT) family AMK58_26370 PF02119 Flagellar P-ring protein AMK58_26380 PF00460 Flagella basal body rod protein AMK58_26380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_26385 PF00460 Flagella basal body rod protein AMK58_26385 PF07559 Flagellar basal body protein FlaE AMK58_26385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_26390 PF00313 'Cold-shock' DNA-binding domain AMK58_26410 PF00672 HAMP domain AMK58_26410 PF02203 Tar ligand binding domain homologue AMK58_26410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_26415 PF03741 Integral membrane protein TerC family AMK58_26420 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_26430 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_26435 PF07729 FCD domain AMK58_26435 PF00392 Bacterial regulatory proteins, gntR family AMK58_26440 PF00892 EamA-like transporter family AMK58_26445 PF01226 Formate/nitrite transporter AMK58_26450 PF04055 Radical SAM superfamily AMK58_26455 PF02887 Pyruvate kinase, alpha/beta domain AMK58_26455 PF00224 Pyruvate kinase, barrel domain AMK58_26460 PF01590 GAF domain AMK58_26460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_26460 PF08446 PAS fold AMK58_26460 PF00360 Phytochrome region AMK58_26460 PF00512 His Kinase A (phospho-acceptor) domain AMK58_26465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_26465 PF00512 His Kinase A (phospho-acceptor) domain AMK58_26465 PF00989 PAS fold AMK58_26465 PF16736 Single Cache-like AMK58_26470 PF17922 Tetracyclin repressor-like, C-terminal domain AMK58_26470 PF00440 Bacterial regulatory proteins, tetR family AMK58_26475 PF00440 Bacterial regulatory proteins, tetR family AMK58_26480 PF00529 HlyD membrane-fusion protein of T1SS AMK58_26480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMK58_26485 PF00873 AcrB/AcrD/AcrF family AMK58_26490 PF01380 SIS domain AMK58_26490 PF01418 Helix-turn-helix domain, rpiR family AMK58_26490 PF02685 Glucokinase AMK58_26495 PF01228 Glycine radical AMK58_26495 PF02901 Pyruvate formate lyase-like AMK58_26500 PF03952 Enolase, N-terminal domain AMK58_26500 PF00113 Enolase, C-terminal TIM barrel domain AMK58_26505 PF01515 Phosphate acetyl/butaryl transferase AMK58_26510 PF00871 Acetokinase family AMK58_26525 PF04962 KduI/IolB family AMK58_26530 PF07729 FCD domain AMK58_26530 PF00392 Bacterial regulatory proteins, gntR family AMK58_26535 PF03812 2-keto-3-deoxygluconate permease AMK58_26540 PF00072 Response regulator receiver domain AMK58_26540 PF00486 Transcriptional regulatory protein, C terminal AMK58_26555 PF03551 Transcriptional regulator PadR-like family AMK58_26555 PF13847 Methyltransferase domain AMK58_26570 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMK58_26570 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMK58_26575 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) AMK58_26580 PF01594 AI-2E family transporter AMK58_26585 PF13419 Haloacid dehalogenase-like hydrolase AMK58_26590 PF00781 Diacylglycerol kinase catalytic domain AMK58_26595 PF00392 Bacterial regulatory proteins, gntR family AMK58_26595 PF07729 FCD domain AMK58_26600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_26600 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_26600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_26605 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMK58_26605 PF10531 SLBB domain AMK58_26605 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMK58_26610 PF00384 Molybdopterin oxidoreductase AMK58_26610 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_26610 PF12838 4Fe-4S dicluster domain AMK58_26610 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMK58_26610 PF01568 Molydopterin dinucleotide binding domain AMK58_26615 PF01614 Bacterial transcriptional regulator AMK58_26615 PF09339 IclR helix-turn-helix domain AMK58_26620 PF09278 MerR, DNA binding AMK58_26620 PF00376 MerR family regulatory protein AMK58_26635 PF02515 CoA-transferase family III AMK58_26640 PF00512 His Kinase A (phospho-acceptor) domain AMK58_26640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_26640 PF00989 PAS fold AMK58_26645 PF00672 HAMP domain AMK58_26645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_26650 PF07969 Amidohydrolase family AMK58_26660 PF02653 Branched-chain amino acid transport system / permease component AMK58_26685 PF00925 GTP cyclohydrolase II AMK58_26700 PF00150 Cellulase (glycosyl hydrolase family 5) AMK58_26760 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMK58_26760 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMK58_26785 PF07879 PHB/PHA accumulation regulator DNA-binding domain AMK58_26785 PF05233 PHB accumulation regulatory domain AMK58_26790 PF12697 Alpha/beta hydrolase family AMK58_26790 PF08241 Methyltransferase domain AMK58_26795 PF00108 Thiolase, N-terminal domain AMK58_26795 PF02803 Thiolase, C-terminal domain AMK58_26810 PF07690 Major Facilitator Superfamily AMK58_26815 PF03466 LysR substrate binding domain AMK58_26815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_26825 PF03707 Bacterial signalling protein N terminal repeat AMK58_26825 PF00563 EAL domain AMK58_26825 PF13188 PAS domain AMK58_26825 PF00990 Diguanylate cyclase, GGDEF domain AMK58_26830 PF01926 50S ribosome-binding GTPase AMK58_26830 PF06071 Protein of unknown function (DUF933) AMK58_26850 PF01612 3'-5' exonuclease AMK58_26850 PF00476 DNA polymerase family A AMK58_26850 PF01367 5'-3' exonuclease, C-terminal SAM fold AMK58_26850 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMK58_26875 PF00005 ABC transporter AMK58_26885 PF00563 EAL domain AMK58_26885 PF03707 Bacterial signalling protein N terminal repeat AMK58_26885 PF00990 Diguanylate cyclase, GGDEF domain AMK58_26895 PF00034 Cytochrome c AMK58_26920 PF00708 Acylphosphatase AMK58_26925 PF00860 Permease family AMK58_26930 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_26930 PF13291 ACT domain AMK58_26935 PF00795 Carbon-nitrogen hydrolase AMK58_26940 PF00491 Arginase family AMK58_26945 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_26950 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_26955 PF08402 TOBE domain AMK58_26955 PF00005 ABC transporter AMK58_26965 PF03466 LysR substrate binding domain AMK58_26965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_26980 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_26980 PF06426 Serine acetyltransferase, N-terminal AMK58_26985 PF00905 Penicillin binding protein transpeptidase domain AMK58_26985 PF00912 Transglycosylase AMK58_26985 PF17092 Penicillin-binding protein OB-like domain AMK58_26995 PF00512 His Kinase A (phospho-acceptor) domain AMK58_26995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_27000 PF02378 Phosphotransferase system, EIIC AMK58_27000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMK58_27005 PF00294 pfkB family carbohydrate kinase AMK58_27010 PF05524 PEP-utilising enzyme, N-terminal AMK58_27010 PF00391 PEP-utilising enzyme, mobile domain AMK58_27010 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_27010 PF00381 PTS HPr component phosphorylation site AMK58_27010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMK58_27015 PF00512 His Kinase A (phospho-acceptor) domain AMK58_27015 PF08448 PAS fold AMK58_27015 PF13188 PAS domain AMK58_27015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_27015 PF00072 Response regulator receiver domain AMK58_27020 PF00072 Response regulator receiver domain AMK58_27025 PF00512 His Kinase A (phospho-acceptor) domain AMK58_27025 PF00360 Phytochrome region AMK58_27025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_27025 PF01590 GAF domain AMK58_27025 PF08446 PAS fold AMK58_27035 PF13746 4Fe-4S dicluster domain AMK58_27035 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMK58_27035 PF12801 4Fe-4S binding domain AMK58_27050 PF01116 Fructose-bisphosphate aldolase class-II AMK58_27060 PF00311 Phosphoenolpyruvate carboxylase AMK58_27065 PF00392 Bacterial regulatory proteins, gntR family AMK58_27065 PF00155 Aminotransferase class I and II AMK58_27070 PF13746 4Fe-4S dicluster domain AMK58_27070 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMK58_27070 PF12801 4Fe-4S binding domain AMK58_27080 PF01323 DSBA-like thioredoxin domain AMK58_27085 PF00486 Transcriptional regulatory protein, C terminal AMK58_27085 PF00072 Response regulator receiver domain AMK58_27120 PF05690 Thiazole biosynthesis protein ThiG AMK58_27130 PF05690 Thiazole biosynthesis protein ThiG AMK58_27130 PF01266 FAD dependent oxidoreductase AMK58_27135 PF01769 Divalent cation transporter AMK58_27135 PF03448 MgtE intracellular N domain AMK58_27135 PF00571 CBS domain AMK58_27150 PF03099 Biotin/lipoate A/B protein ligase family AMK58_27160 PF00171 Aldehyde dehydrogenase family AMK58_27165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_27170 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_27175 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_27175 PF12911 N-terminal TM domain of oligopeptide transport permease C AMK58_27180 PF00005 ABC transporter AMK58_27180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_27185 PF00005 ABC transporter AMK58_27185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_27190 PF01546 Peptidase family M20/M25/M40 AMK58_27190 PF07687 Peptidase dimerisation domain AMK58_27235 PF00483 Nucleotidyl transferase AMK58_27240 PF00226 DnaJ domain AMK58_27240 PF01556 DnaJ C terminal domain AMK58_27240 PF00684 DnaJ central domain AMK58_27250 PF00849 RNA pseudouridylate synthase AMK58_27265 PF00155 Aminotransferase class I and II AMK58_27275 PF13649 Methyltransferase domain AMK58_27280 PF00202 Aminotransferase class-III AMK58_27285 PF04055 Radical SAM superfamily AMK58_27285 PF06968 Biotin and Thiamin Synthesis associated domain AMK58_27295 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMK58_27295 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_27295 PF00391 PEP-utilising enzyme, mobile domain AMK58_27305 PF03975 CheD chemotactic sensory transduction AMK58_27310 PF00313 'Cold-shock' DNA-binding domain AMK58_27315 PF13193 AMP-binding enzyme C-terminal domain AMK58_27315 PF00501 AMP-binding enzyme AMK58_27320 PF01370 NAD dependent epimerase/dehydratase family AMK58_27325 PF01790 Prolipoprotein diacylglyceryl transferase AMK58_27345 PF14572 Phosphoribosyl synthetase-associated domain AMK58_27345 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMK58_27350 PF14693 Ribosomal protein TL5, C-terminal domain AMK58_27350 PF01386 Ribosomal L25p family AMK58_27355 PF01195 Peptidyl-tRNA hydrolase AMK58_27360 PF02653 Branched-chain amino acid transport system / permease component AMK58_27365 PF02653 Branched-chain amino acid transport system / permease component AMK58_27370 PF00005 ABC transporter AMK58_27375 PF13407 Periplasmic binding protein domain AMK58_27380 PF00171 Aldehyde dehydrogenase family AMK58_27385 PF00701 Dihydrodipicolinate synthetase family AMK58_27395 PF03466 LysR substrate binding domain AMK58_27395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_27400 PF13407 Periplasmic binding protein domain AMK58_27405 PF00005 ABC transporter AMK58_27410 PF02653 Branched-chain amino acid transport system / permease component AMK58_27415 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMK58_27420 PF00920 Dehydratase family AMK58_27430 PF01263 Aldose 1-epimerase AMK58_27435 PF01232 Mannitol dehydrogenase Rossmann domain AMK58_27435 PF08125 Mannitol dehydrogenase C-terminal domain AMK58_27445 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_27455 PF04230 Polysaccharide pyruvyl transferase AMK58_27460 PF07732 Multicopper oxidase AMK58_27460 PF07731 Multicopper oxidase AMK58_27460 PF00394 Multicopper oxidase AMK58_27470 PF00440 Bacterial regulatory proteins, tetR family AMK58_27475 PF13533 Biotin-lipoyl like AMK58_27480 PF00873 AcrB/AcrD/AcrF family AMK58_27485 PF05368 NmrA-like family AMK58_27490 PF01638 HxlR-like helix-turn-helix AMK58_27495 PF00199 Catalase AMK58_27495 PF06628 Catalase-related immune-responsive AMK58_27500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_27500 PF03466 LysR substrate binding domain AMK58_27505 PF00588 SpoU rRNA Methylase family AMK58_27515 PF07995 Glucose / Sorbosone dehydrogenase AMK58_27550 PF03786 D-mannonate dehydratase (UxuA) AMK58_27555 PF01232 Mannitol dehydrogenase Rossmann domain AMK58_27555 PF08125 Mannitol dehydrogenase C-terminal domain AMK58_27570 PF07729 FCD domain AMK58_27570 PF00392 Bacterial regulatory proteins, gntR family AMK58_27580 PF07883 Cupin domain AMK58_27585 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_27595 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_27615 PF07715 TonB-dependent Receptor Plug Domain AMK58_27615 PF00593 TonB dependent receptor AMK58_27620 PF00248 Aldo/keto reductase family AMK58_27625 PF07729 FCD domain AMK58_27625 PF00392 Bacterial regulatory proteins, gntR family AMK58_27630 PF02142 MGS-like domain AMK58_27635 PF02614 Glucuronate isomerase AMK58_27640 PF08666 SAF domain AMK58_27640 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AMK58_27645 PF03466 LysR substrate binding domain AMK58_27645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_27670 PF01970 Tripartite tricarboxylate transporter TctA family AMK58_27675 PF03741 Integral membrane protein TerC family AMK58_27685 PF00486 Transcriptional regulatory protein, C terminal AMK58_27685 PF00072 Response regulator receiver domain AMK58_27690 PF00512 His Kinase A (phospho-acceptor) domain AMK58_27690 PF00672 HAMP domain AMK58_27690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_27715 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_27720 PF12911 N-terminal TM domain of oligopeptide transport permease C AMK58_27720 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_27725 PF00392 Bacterial regulatory proteins, gntR family AMK58_27725 PF07702 UTRA domain AMK58_27730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMK58_27740 PF01425 Amidase AMK58_27750 PF00392 Bacterial regulatory proteins, gntR family AMK58_27750 PF07729 FCD domain AMK58_27755 PF02515 CoA-transferase family III AMK58_27760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_27760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_27760 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_27765 PF03972 MmgE/PrpD family AMK58_27775 PF03328 HpcH/HpaI aldolase/citrate lyase family AMK58_27785 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_27825 PF08406 CbbQ/NirQ/NorQ C-terminal AMK58_27825 PF07728 AAA domain (dynein-related subfamily) AMK58_27830 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_27835 PF00034 Cytochrome c AMK58_27840 PF07732 Multicopper oxidase AMK58_27860 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_27865 PF01053 Cys/Met metabolism PLP-dependent enzyme AMK58_27875 PF02514 CobN/Magnesium Chelatase AMK58_27875 PF11965 Domain of unknown function (DUF3479) AMK58_27895 PF01497 Periplasmic binding protein AMK58_27900 PF01032 FecCD transport family AMK58_27910 PF00593 TonB dependent receptor AMK58_27910 PF07715 TonB-dependent Receptor Plug Domain AMK58_27915 PF08753 NikR C terminal nickel binding domain AMK58_27915 PF01402 Ribbon-helix-helix protein, copG family AMK58_27920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_27980 PF00589 Phage integrase family AMK58_27985 PF07693 KAP family P-loop domain AMK58_27990 PF02082 Transcriptional regulator AMK58_28010 PF00378 Enoyl-CoA hydratase/isomerase AMK58_28020 PF02803 Thiolase, C-terminal domain AMK58_28020 PF00108 Thiolase, N-terminal domain AMK58_28030 PF00106 short chain dehydrogenase AMK58_28035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_28035 PF03466 LysR substrate binding domain AMK58_28040 PF00083 Sugar (and other) transporter AMK58_28045 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMK58_28045 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_28050 PF02515 CoA-transferase family III AMK58_28055 PF00171 Aldehyde dehydrogenase family AMK58_28065 PF03466 LysR substrate binding domain AMK58_28065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_28085 PF02525 Flavodoxin-like fold AMK58_28095 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_28095 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_28095 PF00034 Cytochrome c AMK58_28100 PF01799 [2Fe-2S] binding domain AMK58_28100 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_28105 PF00196 Bacterial regulatory proteins, luxR family AMK58_28110 PF00589 Phage integrase family AMK58_28115 PF09299 Mu transposase, C-terminal AMK58_28115 PF00665 Integrase core domain AMK58_28140 PF00239 Resolvase, N terminal domain AMK58_28160 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_28160 PF00107 Zinc-binding dehydrogenase AMK58_28175 PF00696 Amino acid kinase family AMK58_28180 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMK58_28180 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMK58_28190 PF13520 Amino acid permease AMK58_28210 PF00266 Aminotransferase class-V AMK58_28215 PF00367 phosphotransferase system, EIIB AMK58_28215 PF02378 Phosphotransferase system, EIIC AMK58_28220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMK58_28220 PF00381 PTS HPr component phosphorylation site AMK58_28220 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_28220 PF00391 PEP-utilising enzyme, mobile domain AMK58_28220 PF05524 PEP-utilising enzyme, N-terminal AMK58_28225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMK58_28225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMK58_28230 PF00294 pfkB family carbohydrate kinase AMK58_28245 PF13180 PDZ domain AMK58_28245 PF03572 Peptidase family S41 AMK58_28275 PF01144 Coenzyme A transferase AMK58_28280 PF01144 Coenzyme A transferase AMK58_28285 PF00691 OmpA family AMK58_28285 PF13488 Glycine zipper AMK58_28290 PF00571 CBS domain AMK58_28295 PF00239 Resolvase, N terminal domain AMK58_28315 PF11972 HTH DNA binding domain AMK58_28315 PF07756 Protein of unknown function (DUF1612) AMK58_28320 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_28335 PF00665 Integrase core domain AMK58_28340 PF01695 IstB-like ATP binding protein AMK58_28350 PF02796 Helix-turn-helix domain of resolvase AMK58_28350 PF00665 Integrase core domain AMK58_28355 PF01695 IstB-like ATP binding protein AMK58_28390 PF07015 VirC1 protein AMK58_28410 PF13610 DDE domain AMK58_28425 PF00486 Transcriptional regulatory protein, C terminal AMK58_28425 PF00072 Response regulator receiver domain AMK58_28430 PF00512 His Kinase A (phospho-acceptor) domain AMK58_28430 PF00672 HAMP domain AMK58_28430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_28435 PF00664 ABC transporter transmembrane region AMK58_28435 PF00005 ABC transporter AMK58_28440 PF00529 HlyD membrane-fusion protein of T1SS AMK58_28440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMK58_28465 PF00872 Transposase, Mutator family AMK58_28475 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_28480 PF03264 NapC/NirT cytochrome c family, N-terminal region AMK58_28485 PF00127 Copper binding proteins, plastocyanin/azurin family AMK58_28515 PF03239 Iron permease FTR1 family AMK58_28530 PF10634 Fe2+ transport protein AMK58_28545 PF03900 Porphobilinogen deaminase, C-terminal domain AMK58_28545 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMK58_28555 PF04055 Radical SAM superfamily AMK58_28555 PF13186 Iron-sulfur cluster-binding domain AMK58_28560 PF17805 AsnC-like ligand binding domain AMK58_28565 PF17805 AsnC-like ligand binding domain AMK58_28570 PF17805 AsnC-like ligand binding domain AMK58_28575 PF13404 AsnC-type helix-turn-helix domain AMK58_28575 PF17805 AsnC-like ligand binding domain AMK58_28585 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_28590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_28590 PF14824 Sirohaem biosynthesis protein central AMK58_28590 PF10414 Sirohaem synthase dimerisation region AMK58_28605 PF00672 HAMP domain AMK58_28605 PF16591 Helical bimodular sensor domain AMK58_28605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_28610 PF13610 DDE domain AMK58_28615 PF00155 Aminotransferase class I and II AMK58_28635 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_28640 PF00034 Cytochrome c AMK58_28650 PF00583 Acetyltransferase (GNAT) family AMK58_28650 PF13607 Succinyl-CoA ligase like flavodoxin domain AMK58_28650 PF13380 CoA binding domain AMK58_28655 PF02515 CoA-transferase family III AMK58_28665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_28665 PF00072 Response regulator receiver domain AMK58_28665 PF09456 RcsC Alpha-Beta-Loop (ABL) AMK58_28665 PF00512 His Kinase A (phospho-acceptor) domain AMK58_28670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_28670 PF00512 His Kinase A (phospho-acceptor) domain AMK58_28675 PF00042 Globin AMK58_28675 PF00970 Oxidoreductase FAD-binding domain AMK58_28675 PF00175 Oxidoreductase NAD-binding domain AMK58_28695 PF00092 von Willebrand factor type A domain AMK58_28700 PF07728 AAA domain (dynein-related subfamily) AMK58_28700 PF08406 CbbQ/NirQ/NorQ C-terminal AMK58_28705 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_28710 PF00034 Cytochrome c AMK58_28745 PF13439 Glycosyltransferase Family 4 AMK58_28755 PF00535 Glycosyl transferase family 2 AMK58_28765 PF13439 Glycosyltransferase Family 4 AMK58_28765 PF00534 Glycosyl transferases group 1 AMK58_28785 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMK58_28785 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMK58_28785 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMK58_28805 PF00535 Glycosyl transferase family 2 AMK58_28815 PF00535 Glycosyl transferase family 2 AMK58_28820 PF13439 Glycosyltransferase Family 4 AMK58_28820 PF00534 Glycosyl transferases group 1 AMK58_28825 PF01370 NAD dependent epimerase/dehydratase family AMK58_28855 PF00005 ABC transporter AMK58_28890 PF13439 Glycosyltransferase Family 4 AMK58_28890 PF00534 Glycosyl transferases group 1 AMK58_28895 PF10119 Predicted methyltransferase regulatory domain AMK58_28895 PF13847 Methyltransferase domain AMK58_28900 PF13580 SIS domain AMK58_28905 PF01266 FAD dependent oxidoreductase AMK58_28910 PF08548 Peptidase M10 serralysin C terminal AMK58_28910 PF00413 Matrixin AMK58_28910 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMK58_28915 PF13439 Glycosyltransferase Family 4 AMK58_28915 PF00534 Glycosyl transferases group 1 AMK58_28920 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMK58_28925 PF16363 GDP-mannose 4,6 dehydratase AMK58_28930 PF04321 RmlD substrate binding domain AMK58_28935 PF00483 Nucleotidyl transferase AMK58_28950 PF00005 ABC transporter AMK58_28950 PF03412 Peptidase C39 family AMK58_28950 PF00664 ABC transporter transmembrane region AMK58_28955 PF00535 Glycosyl transferase family 2 AMK58_28960 PF01370 NAD dependent epimerase/dehydratase family AMK58_28965 PF00005 ABC transporter AMK58_28970 PF01061 ABC-2 type transporter AMK58_28975 PF16363 GDP-mannose 4,6 dehydratase AMK58_28980 PF16363 GDP-mannose 4,6 dehydratase AMK58_28990 PF14307 Glycosyltransferase WbsX AMK58_28990 PF05045 Rhamnan synthesis protein F AMK58_29025 PF00483 Nucleotidyl transferase AMK58_29025 PF01050 Mannose-6-phosphate isomerase AMK58_29030 PF00535 Glycosyl transferase family 2 AMK58_29035 PF00534 Glycosyl transferases group 1 AMK58_29035 PF08323 Starch synthase catalytic domain AMK58_29040 PF13439 Glycosyltransferase Family 4 AMK58_29040 PF00534 Glycosyl transferases group 1 AMK58_29045 PF00535 Glycosyl transferase family 2 AMK58_29075 PF01507 Phosphoadenosine phosphosulfate reductase family AMK58_29080 PF00009 Elongation factor Tu GTP binding domain AMK58_29085 PF01370 NAD dependent epimerase/dehydratase family AMK58_29125 PF13614 AAA domain AMK58_29130 PF02195 ParB-like nuclease domain AMK58_29130 PF17762 HTH domain found in ParB protein AMK58_29135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMK58_29135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMK58_29135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMK58_29135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMK58_29140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMK58_29140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMK58_29140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMK58_29150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMK58_29155 PF02719 Polysaccharide biosynthesis protein AMK58_29165 PF03737 Aldolase/RraA AMK58_29170 PF01970 Tripartite tricarboxylate transporter TctA family AMK58_29180 PF00293 NUDIX domain AMK58_29200 PF00696 Amino acid kinase family AMK58_29205 PF00696 Amino acid kinase family AMK58_29230 PF16363 GDP-mannose 4,6 dehydratase AMK58_29255 PF00733 Asparagine synthase AMK58_29255 PF13537 Glutamine amidotransferase domain AMK58_29280 PF13439 Glycosyltransferase Family 4 AMK58_29290 PF00535 Glycosyl transferase family 2