AMK58_00005 PF08335 GlnD PII-uridylyltransferase AMK58_00030 PF13458 Periplasmic binding protein AMK58_00040 PF01053 Cys/Met metabolism PLP-dependent enzyme AMK58_00045 PF13466 STAS domain AMK58_00055 PF00488 MutS domain V AMK58_00055 PF01624 MutS domain I AMK58_00055 PF05188 MutS domain II AMK58_00055 PF05190 MutS family domain IV AMK58_00055 PF05192 MutS domain III AMK58_00070 PF01909 Nucleotidyltransferase domain AMK58_00070 PF01966 HD domain AMK58_00070 PF08335 GlnD PII-uridylyltransferase AMK58_00075 PF01569 PAP2 superfamily AMK58_00080 PF04796 AMK58_00080 AMK58_00090 PF13458 Periplasmic binding protein AMK58_00095 PF00072 Response regulator receiver domain AMK58_00095 PF00512 His Kinase A (phospho-acceptor) domain AMK58_00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_00095 PF13426 PAS domain AMK58_00100 PF03023 AMK58_00100 AMK58_00105 PF00579 tRNA synthetases class I (W and Y) AMK58_00110 PF01470 Pyroglutamyl peptidase AMK58_00115 PF03692 AMK58_00115 AMK58_00120 PF02810 SEC-C motif AMK58_00125 PF13463 Winged helix DNA-binding domain AMK58_00135 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_00140 PF00440 Bacterial regulatory proteins, tetR family AMK58_00145 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_00150 PF10129 AMK58_00150 AMK58_00155 PF00561 alpha/beta hydrolase fold AMK58_00160 PF01564 Spermine/spermidine synthase AMK58_00160 PF17284 AMK58_00160 AMK58_00165 PF02675 S-adenosylmethionine decarboxylase AMK58_00170 PF07722 Peptidase C26 AMK58_00175 PF01047 MarR family AMK58_00180 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMK58_00185 PF03372 Endonuclease/Exonuclease/phosphatase family AMK58_00190 PF00300 Histidine phosphatase superfamily (branch 1) AMK58_00195 PF00534 Glycosyl transferases group 1 AMK58_00200 PF00990 GGDEF domain AMK58_00200 PF13426 PAS domain AMK58_00205 PF00534 Glycosyl transferases group 1 AMK58_00215 PF00005 ABC transporter AMK58_00215 PF00664 ABC transporter transmembrane region AMK58_00220 PF00027 Cyclic nucleotide-binding domain AMK58_00225 PF04101 Glycosyltransferase family 28 C-terminal domain AMK58_00240 PF00005 ABC transporter AMK58_00240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_00245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_00250 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_00255 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_00255 PF12911 AMK58_00255 AMK58_00260 PF05951 AMK58_00260 AMK58_00265 PF12706 Beta-lactamase superfamily domain AMK58_00275 PF07995 Glucose / Sorbosone dehydrogenase AMK58_00285 PF00072 Response regulator receiver domain AMK58_00285 PF00486 Transcriptional regulatory protein, C terminal AMK58_00290 PF00925 GTP cyclohydrolase II AMK58_00300 PF03734 L,D-transpeptidase catalytic domain AMK58_00305 PF01168 Alanine racemase, N-terminal domain AMK58_00315 PF13609 Gram-negative porin AMK58_00320 PF13609 Gram-negative porin AMK58_00325 PF12100 AMK58_00325 AMK58_00330 PF00133 tRNA synthetases class I (I, L, M and V) AMK58_00330 PF08264 Anticodon-binding domain of tRNA AMK58_00330 PF09334 tRNA synthetases class I (M) AMK58_00330 PF13603 Leucyl-tRNA synthetase, Domain 2 AMK58_00335 PF04390 Lipopolysaccharide-assembly AMK58_00345 PF13449 Esterase-like activity of phytase AMK58_00350 PF02195 ParB-like nuclease domain AMK58_00355 PF13614 AAA domain AMK58_00360 PF02527 rRNA small subunit methyltransferase G AMK58_00365 PF01134 Glucose inhibited division protein A AMK58_00365 PF13932 GidA associated domain 3 AMK58_00370 PF01926 50S ribosome-binding GTPase AMK58_00370 PF10396 GTP-binding protein TrmE N-terminus AMK58_00370 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE AMK58_00385 PF03190 Protein of unknown function, DUF255 AMK58_00385 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) AMK58_00390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMK58_00395 PF00107 Zinc-binding dehydrogenase AMK58_00395 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_00400 PF00929 Exonuclease AMK58_00405 PF01121 Dephospho-CoA kinase AMK58_00410 PF01488 Shikimate / quinate 5-dehydrogenase AMK58_00410 PF08501 Shikimate dehydrogenase substrate binding domain AMK58_00415 PF02545 Maf-like protein AMK58_00420 PF03618 AMK58_00420 AMK58_00425 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMK58_00430 PF03653 AMK58_00430 AMK58_00435 PF04014 Antidote-toxin recognition MazE AMK58_00440 PF02661 Fic/DOC family AMK58_00445 PF00122 E1-E2 ATPase AMK58_00445 PF00689 Cation transporting ATPase, C-terminus AMK58_00445 PF00690 Cation transporter/ATPase, N-terminus AMK58_00445 PF00702 haloacid dehalogenase-like hydrolase AMK58_00450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMK58_00450 PF07497 Rho termination factor, RNA-binding domain AMK58_00450 PF07498 Rho termination factor, N-terminal domain AMK58_00455 PF02556 Preprotein translocase subunit SecB AMK58_00460 PF04186 AMK58_00460 AMK58_00465 PF04280 Tim44-like domain AMK58_00470 PF03562 MltA specific insert domain AMK58_00470 PF06725 3D domain AMK58_00475 PF06724 AMK58_00475 AMK58_00480 PF01230 HIT domain AMK58_00485 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMK58_00490 PF00977 Histidine biosynthesis protein AMK58_00495 PF00977 Histidine biosynthesis protein AMK58_00500 PF00583 Acetyltransferase (GNAT) family AMK58_00505 PF00117 Glutamine amidotransferase class-I AMK58_00510 PF00475 Imidazoleglycerol-phosphate dehydratase AMK58_00520 PF00227 Proteasome subunit AMK58_00525 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_00525 PF07724 AAA domain (Cdc48 subfamily) AMK58_00525 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_00530 PF00005 ABC transporter AMK58_00535 PF00512 His Kinase A (phospho-acceptor) domain AMK58_00535 PF00989 PAS fold AMK58_00535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_00540 PF12844 Helix-turn-helix domain AMK58_00545 PF01713 Smr domain AMK58_00550 PF02589 Uncharacterised ACR, YkgG family COG1556 AMK58_00555 PF02589 Uncharacterised ACR, YkgG family COG1556 AMK58_00555 PF11870 AMK58_00555 AMK58_00555 PF13534 4Fe-4S dicluster domain AMK58_00560 PF02754 AMK58_00560 AMK58_00565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_00565 PF08447 PAS fold AMK58_00570 PF01810 AMK58_00570 AMK58_00575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_00575 PF03466 LysR substrate binding domain AMK58_00580 PF00950 AMK58_00580 AMK58_00585 PF00005 ABC transporter AMK58_00590 PF01297 Periplasmic solute binding protein family AMK58_00595 PF01113 Dihydrodipicolinate reductase, N-terminus AMK58_00595 PF05173 Dihydrodipicolinate reductase, C-terminus AMK58_00600 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMK58_00600 PF12833 Helix-turn-helix domain AMK58_00605 PF10003 AMK58_00605 AMK58_00610 PF00633 Helix-hairpin-helix motif AMK58_00610 PF00730 HhH-GPD superfamily base excision DNA repair protein AMK58_00610 PF10576 Iron-sulfur binding domain of endonuclease III AMK58_00615 PF04519 AMK58_00615 AMK58_00620 PF07264 Etoposide-induced protein 2 AMK58_00625 PF00294 pfkB family carbohydrate kinase AMK58_00630 PF01925 AMK58_00630 AMK58_00635 PF09608 AMK58_00635 AMK58_00640 PF00582 Universal stress protein family AMK58_00645 PF01564 Spermine/spermidine synthase AMK58_00650 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_00655 PF01106 NifU-like domain AMK58_00655 PF08712 Scaffold protein Nfu/NifU N terminal AMK58_00660 PF01522 Polysaccharide deacetylase AMK58_00665 PF01427 D-ala-D-ala dipeptidase AMK58_00670 PF00814 Glycoprotease family AMK58_00675 PF00583 Acetyltransferase (GNAT) family AMK58_00680 PF01206 Sulfurtransferase TusA AMK58_00685 PF05443 ROS/MUCR transcriptional regulator protein AMK58_00690 PF13444 Acetyltransferase (GNAT) domain AMK58_00695 PF01553 Acyltransferase AMK58_00700 PF00919 Uncharacterized protein family UPF0004 AMK58_00700 PF01938 TRAM domain AMK58_00700 PF04055 Radical SAM superfamily AMK58_00705 PF02562 PhoH-like protein AMK58_00710 PF02130 Uncharacterized protein family UPF0054 AMK58_00715 PF00571 CBS domain AMK58_00715 PF03471 Transporter associated domain AMK58_00720 PF00795 Carbon-nitrogen hydrolase AMK58_00725 PF01381 Helix-turn-helix AMK58_00730 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMK58_00730 PF02772 S-adenosylmethionine synthetase, central domain AMK58_00730 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMK58_00735 PF02390 Putative methyltransferase AMK58_00740 PF03992 Antibiotic biosynthesis monooxygenase AMK58_00745 PF02576 Uncharacterised BCR, YhbC family COG0779 AMK58_00745 PF17384 AMK58_00745 AMK58_00750 PF00575 S1 RNA binding domain AMK58_00750 PF08529 NusA N-terminal domain AMK58_00750 PF13184 NusA-like KH domain AMK58_00750 PF14520 Helix-hairpin-helix domain AMK58_00755 PF04296 Protein of unknown function (DUF448) AMK58_00760 PF00009 Elongation factor Tu GTP binding domain AMK58_00760 PF04760 Translation initiation factor IF-2, N-terminal region AMK58_00760 PF08364 AMK58_00760 AMK58_00760 PF11987 Translation-initiation factor 2 AMK58_00765 PF02033 Ribosome-binding factor A AMK58_00770 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMK58_00770 PF16198 AMK58_00770 AMK58_00775 PF00312 Ribosomal protein S15 AMK58_00780 PF00013 KH domain AMK58_00780 PF00575 S1 RNA binding domain AMK58_00780 PF01138 3' exoribonuclease family, domain 1 AMK58_00780 PF03725 3' exoribonuclease family, domain 2 AMK58_00780 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMK58_00790 PF04228 AMK58_00790 AMK58_00795 PF03073 TspO/MBR family AMK58_00800 PF04055 Radical SAM superfamily AMK58_00800 PF13353 4Fe-4S single cluster domain AMK58_00805 PF03009 Glycerophosphoryl diester phosphodiesterase family AMK58_00815 PF01475 Ferric uptake regulator family AMK58_00820 PF02915 Rubrerythrin AMK58_00825 PF12007 Protein of unknown function (DUF3501) AMK58_00830 PF06347 Bacterial SH3 domain AMK58_00835 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMK58_00835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_00840 PF05685 Putative restriction endonuclease AMK58_00845 PF00583 Acetyltransferase (GNAT) family AMK58_00845 PF13380 CoA binding domain AMK58_00845 PF13549 ATP-grasp domain AMK58_00845 PF13607 Succinyl-CoA ligase like flavodoxin domain AMK58_00850 PF00056 lactate/malate dehydrogenase, NAD binding domain AMK58_00850 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMK58_00855 PF00719 Inorganic pyrophosphatase AMK58_00860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_00865 PF13189 Cytidylate kinase-like family AMK58_00870 PF03109 AMK58_00870 AMK58_00875 PF01209 ubiE/COQ5 methyltransferase family AMK58_00880 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMK58_00880 PF13432 Tetratricopeptide repeat AMK58_00885 PF13432 Tetratricopeptide repeat AMK58_00890 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMK58_00890 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMK58_00900 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_00905 PF01649 Ribosomal protein S20 AMK58_00910 PF00308 Bacterial dnaA protein AMK58_00910 PF08299 Bacterial dnaA protein helix-turn-helix AMK58_00910 PF11638 DnaA N-terminal domain AMK58_00915 PF13416 Bacterial extracellular solute-binding protein AMK58_00920 PF00005 ABC transporter AMK58_00920 PF08402 TOBE domain AMK58_00925 PF04234 CopC domain AMK58_00925 PF05425 AMK58_00925 AMK58_00930 PF07987 Domain of unkown function (DUF1775) AMK58_00935 PF11162 AMK58_00935 AMK58_00940 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_00945 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_00955 PF13279 Thioesterase-like superfamily AMK58_00960 PF00394 Multicopper oxidase AMK58_00960 PF07731 Multicopper oxidase AMK58_00960 PF07732 Multicopper oxidase AMK58_00965 PF05958 tRNA (Uracil-5-)-methyltransferase AMK58_00970 PF10672 S-adenosylmethionine-dependent methyltransferase AMK58_00980 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_00985 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO AMK58_00990 PF05545 AMK58_00990 AMK58_00995 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_00995 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMK58_01000 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMK58_01000 PF12801 AMK58_01000 AMK58_01000 PF13746 4Fe-4S dicluster domain AMK58_01005 PF05751 AMK58_01005 AMK58_01010 PF00122 E1-E2 ATPase AMK58_01010 PF00403 Heavy-metal-associated domain AMK58_01010 PF00702 haloacid dehalogenase-like hydrolase AMK58_01010 PF12156 AMK58_01010 AMK58_01015 PF00027 Cyclic nucleotide-binding domain AMK58_01015 PF13545 Crp-like helix-turn-helix domain AMK58_01020 PF00390 Malic enzyme, N-terminal domain AMK58_01020 PF01515 Phosphate acetyl/butaryl transferase AMK58_01020 PF03949 Malic enzyme, NAD binding domain AMK58_01025 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01030 PF12849 PBP superfamily domain AMK58_01035 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_01035 PF12501 AMK58_01035 AMK58_01040 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_01040 PF11812 AMK58_01040 AMK58_01045 PF00005 ABC transporter AMK58_01050 PF01895 PhoU domain AMK58_01055 PF00072 Response regulator receiver domain AMK58_01055 PF00486 Transcriptional regulatory protein, C terminal AMK58_01065 PF02635 DsrE/DsrF-like family AMK58_01070 PF00899 ThiF family AMK58_01080 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_01085 PF02082 Transcriptional regulator AMK58_01090 PF00692 dUTPase AMK58_01095 PF02441 Flavoprotein AMK58_01095 PF04127 DNA / pantothenate metabolism flavoprotein AMK58_01100 PF00072 Response regulator receiver domain AMK58_01100 PF00158 Sigma-54 interaction domain AMK58_01100 PF02954 Bacterial regulatory protein, Fis family AMK58_01105 PF00313 'Cold-shock' DNA-binding domain AMK58_01110 PF00072 Response regulator receiver domain AMK58_01110 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01110 PF01627 Hpt domain AMK58_01110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01110 PF12860 AMK58_01110 AMK58_01110 PF13426 PAS domain AMK58_01115 PF00950 AMK58_01115 AMK58_01120 PF00950 AMK58_01120 AMK58_01125 PF00005 ABC transporter AMK58_01130 PF01297 Periplasmic solute binding protein family AMK58_01135 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase AMK58_01145 PF12710 haloacid dehalogenase-like hydrolase AMK58_01155 PF01475 Ferric uptake regulator family AMK58_01160 PF01841 Transglutaminase-like superfamily AMK58_01160 PF08379 AMK58_01160 AMK58_01165 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01170 PF00183 Hsp90 protein AMK58_01170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01180 PF00271 Helicase conserved C-terminal domain AMK58_01185 PF01479 S4 domain AMK58_01190 PF03741 AMK58_01190 AMK58_01195 PF00571 CBS domain AMK58_01200 PF06080 AMK58_01200 AMK58_01205 PF06779 AMK58_01205 AMK58_01210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_01210 PF03466 LysR substrate binding domain AMK58_01215 PF00037 4Fe-4S binding domain AMK58_01215 PF11953 Domain of unknown function (DUF3470) AMK58_01220 PF02559 CarD-like/TRCF domain AMK58_01225 PF00561 alpha/beta hydrolase fold AMK58_01230 PF00565 Staphylococcal nuclease homologue AMK58_01235 PF01435 Peptidase family M48 AMK58_01240 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_01245 PF04542 Sigma-70 region 2 AMK58_01245 PF04545 Sigma-70, region 4 AMK58_01255 PF01632 Ribosomal protein L35 AMK58_01260 PF00453 Ribosomal protein L20 AMK58_01265 PF01409 tRNA synthetases class II core domain (F) AMK58_01265 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMK58_01270 PF01588 Putative tRNA binding domain AMK58_01270 PF03147 Ferredoxin-fold anticodon binding domain AMK58_01270 PF03483 B3/4 domain AMK58_01270 PF03484 tRNA synthetase B5 domain AMK58_01275 PF00072 Response regulator receiver domain AMK58_01280 PF00072 Response regulator receiver domain AMK58_01280 PF11849 AMK58_01280 AMK58_01280 PF13487 HD domain AMK58_01285 PF08239 Bacterial SH3 domain AMK58_01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_01290 PF03466 LysR substrate binding domain AMK58_01300 PF00009 Elongation factor Tu GTP binding domain AMK58_01300 PF00679 Elongation factor G C-terminus AMK58_01300 PF03144 Elongation factor Tu domain 2 AMK58_01300 PF06421 GTP-binding protein LepA C-terminus AMK58_01305 PF05050 Methyltransferase FkbM domain AMK58_01310 PF00534 Glycosyl transferases group 1 AMK58_01310 PF08323 Starch synthase catalytic domain AMK58_01315 PF00483 Nucleotidyl transferase AMK58_01320 PF00909 Ammonium Transporter Family AMK58_01325 PF08242 Methyltransferase domain AMK58_01330 PF06445 GyrI-like small molecule binding domain AMK58_01330 PF12833 Helix-turn-helix domain AMK58_01335 PF06089 AMK58_01335 AMK58_01340 PF00588 SpoU rRNA Methylase family AMK58_01345 PF12973 ChrR Cupin-like domain AMK58_01350 PF04542 Sigma-70 region 2 AMK58_01350 PF04545 Sigma-70, region 4 AMK58_01360 PF04055 Radical SAM superfamily AMK58_01375 PF00764 Arginosuccinate synthase AMK58_01380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_01380 PF00672 HAMP domain AMK58_01380 PF12729 AMK58_01380 AMK58_01385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMK58_01390 PF00581 Rhodanese-like domain AMK58_01395 PF06803 AMK58_01395 AMK58_01400 PF00892 EamA-like transporter family AMK58_01405 PF13432 Tetratricopeptide repeat AMK58_01410 PF03918 Cytochrome C biogenesis protein AMK58_01415 PF08534 Redoxin AMK58_01420 PF01578 AMK58_01420 AMK58_01420 PF16327 AMK58_01420 AMK58_01425 PF03100 CcmE AMK58_01430 PF04995 AMK58_01430 AMK58_01435 PF01578 AMK58_01435 AMK58_01440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_01440 PF03466 LysR substrate binding domain AMK58_01445 PF06568 AMK58_01445 AMK58_01450 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMK58_01455 PF02146 Sir2 family AMK58_01460 PF03167 Uracil DNA glycosylase superfamily AMK58_01465 PF06262 Possibl zinc metallo-peptidase AMK58_01470 PF01329 Pterin 4 alpha carbinolamine dehydratase AMK58_01475 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMK58_01475 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMK58_01480 PF01544 CorA-like Mg2+ transporter protein AMK58_01485 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMK58_01485 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMK58_01490 PF02594 Uncharacterised ACR, YggU family COG1872 AMK58_01495 PF02325 AMK58_01495 AMK58_01505 PF00892 EamA-like transporter family AMK58_01510 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_01515 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_01520 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_01525 PF00005 ABC transporter AMK58_01530 PF02080 TrkA-C domain AMK58_01530 PF06826 AMK58_01530 AMK58_01535 PF02080 TrkA-C domain AMK58_01535 PF06826 AMK58_01535 AMK58_01540 PF00005 ABC transporter AMK58_01545 PF03379 AMK58_01545 AMK58_01550 PF00085 Thioredoxin AMK58_01555 PF00580 UvrD/REP helicase N-terminal domain AMK58_01555 PF12705 PD-(D/E)XK nuclease superfamily AMK58_01555 PF13361 UvrD-like helicase C-terminal domain AMK58_01565 PF12705 PD-(D/E)XK nuclease superfamily AMK58_01570 PF12804 MobA-like NTP transferase domain AMK58_01575 PF01636 Phosphotransferase enzyme family AMK58_01580 PF02367 Uncharacterised P-loop hydrolase UPF0079 AMK58_01590 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_01595 PF07813 LTXXQ motif family protein AMK58_01600 PF00072 Response regulator receiver domain AMK58_01600 PF00486 Transcriptional regulatory protein, C terminal AMK58_01605 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01605 PF00672 HAMP domain AMK58_01605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01610 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_01615 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01615 PF12860 AMK58_01615 AMK58_01620 PF00072 Response regulator receiver domain AMK58_01620 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01620 PF00672 HAMP domain AMK58_01620 PF01627 Hpt domain AMK58_01620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01620 PF08448 PAS fold AMK58_01625 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_01630 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_01635 PF00290 Tryptophan synthase alpha chain AMK58_01640 PF01039 Carboxyl transferase domain AMK58_01645 PF08245 Mur ligase middle domain AMK58_01660 PF00106 short chain dehydrogenase AMK58_01670 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01675 PF01227 GTP cyclohydrolase I AMK58_01680 PF00892 EamA-like transporter family AMK58_01685 PF04073 Aminoacyl-tRNA editing domain AMK58_01690 PF00072 Response regulator receiver domain AMK58_01690 PF02954 Bacterial regulatory protein, Fis family AMK58_01695 PF01227 GTP cyclohydrolase I AMK58_01700 PF04379 Protein of unknown function (DUF525) AMK58_01705 PF00583 Acetyltransferase (GNAT) family AMK58_01720 PF02557 D-alanyl-D-alanine carboxypeptidase AMK58_01725 PF00112 Papain family cysteine protease AMK58_01730 PF00270 DEAD/DEAH box helicase AMK58_01730 PF00271 Helicase conserved C-terminal domain AMK58_01730 PF13245 Part of AAA domain AMK58_01730 PF13361 UvrD-like helicase C-terminal domain AMK58_01735 PF03167 Uracil DNA glycosylase superfamily AMK58_01745 PF12728 Helix-turn-helix domain AMK58_01750 PF13481 AAA domain AMK58_01755 PF11726 AMK58_01755 AMK58_01795 PF00012 Hsp70 protein AMK58_01800 PF13538 UvrD-like helicase C-terminal domain AMK58_01800 PF13604 AAA domain AMK58_01805 PF13245 Part of AAA domain AMK58_01805 PF13361 UvrD-like helicase C-terminal domain AMK58_01815 PF00069 Protein kinase domain AMK58_01825 PF01935 Domain of unknown function DUF87 AMK58_01860 PF02384 N-6 DNA Methylase AMK58_01875 PF08878 AMK58_01875 AMK58_01880 PF00270 DEAD/DEAH box helicase AMK58_01880 PF00271 Helicase conserved C-terminal domain AMK58_01885 PF00589 Phage integrase family AMK58_01890 PF13441 AMK58_01890 AMK58_01900 PF00005 ABC transporter AMK58_01905 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_01910 PF09084 NMT1/THI5 like AMK58_01920 PF00072 Response regulator receiver domain AMK58_01920 PF00512 His Kinase A (phospho-acceptor) domain AMK58_01920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01920 PF02743 Cache domain AMK58_01920 PF08448 PAS fold AMK58_01930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01935 PF12224 AMK58_01935 AMK58_01940 PF07722 Peptidase C26 AMK58_01945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_01945 PF13426 PAS domain AMK58_01955 PF00614 Phospholipase D Active site motif AMK58_01955 PF13091 PLD-like domain AMK58_01960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_01965 PF00691 OmpA family AMK58_01965 PF14346 Domain of unknown function (DUF4398) AMK58_01970 PF14346 Domain of unknown function (DUF4398) AMK58_01980 PF07298 AMK58_01980 AMK58_01985 PF11154 AMK58_01985 AMK58_01995 PF13180 PDZ domain AMK58_01995 PF13365 Trypsin-like peptidase domain AMK58_02005 PF00805 Pentapeptide repeats (8 copies) AMK58_02010 PF07219 AMK58_02010 AMK58_02015 PF09731 AMK58_02015 AMK58_02020 PF02602 Uroporphyrinogen-III synthase HemD AMK58_02025 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMK58_02025 PF03900 Porphobilinogen deaminase, C-terminal domain AMK58_02030 PF13649 Methyltransferase domain AMK58_02035 PF00814 Glycoprotease family AMK58_02040 PF00583 Acetyltransferase (GNAT) family AMK58_02045 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMK58_02045 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMK58_02050 PF03795 YCII-related domain AMK58_02055 PF01878 EVE domain AMK58_02065 PF00501 AMP-binding enzyme AMK58_02065 PF13193 AMP-binding enzyme C-terminal domain AMK58_02065 PF16177 AMK58_02065 AMK58_02075 PF00565 Staphylococcal nuclease homologue AMK58_02080 PF07896 Protein of unknown function (DUF1674) AMK58_02085 PF01435 Peptidase family M48 AMK58_02100 PF01029 NusB family AMK58_02100 PF01189 NOL1/NOP2/sun family AMK58_02105 PF07940 Heparinase II/III-like protein AMK58_02105 PF16889 AMK58_02105 AMK58_02110 PF01808 AICARFT/IMPCHase bienzyme AMK58_02110 PF02142 MGS-like domain AMK58_02120 PF11700 AMK58_02120 AMK58_02135 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AMK58_02135 PF13432 Tetratricopeptide repeat AMK58_02140 PF05088 AMK58_02140 AMK58_02145 PF11849 AMK58_02145 AMK58_02145 PF13487 HD domain AMK58_02150 PF03401 Tripartite tricarboxylate transporter family receptor AMK58_02155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_02155 PF00672 HAMP domain AMK58_02160 PF03401 Tripartite tricarboxylate transporter family receptor AMK58_02165 PF03547 AMK58_02165 AMK58_02170 PF03737 Demethylmenaquinone methyltransferase AMK58_02180 PF04073 Aminoacyl-tRNA editing domain AMK58_02185 PF00085 Thioredoxin AMK58_02185 PF14559 Tetratricopeptide repeat AMK58_02185 PF14561 Tetratricopeptide repeat AMK58_02190 PF02190 ATP-dependent protease La (LON) domain AMK58_02195 PF03966 Trm112p-like protein AMK58_02200 PF06155 Protein of unknown function (DUF971) AMK58_02210 PF05899 Protein of unknown function (DUF861) AMK58_02215 PF13419 Haloacid dehalogenase-like hydrolase AMK58_02220 PF06568 AMK58_02220 AMK58_02225 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMK58_02225 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMK58_02230 PF02308 AMK58_02230 AMK58_02235 PF07690 Major Facilitator Superfamily AMK58_02240 PF01863 Protein of unknown function DUF45 AMK58_02245 PF00512 His Kinase A (phospho-acceptor) domain AMK58_02245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_02245 PF08448 PAS fold AMK58_02255 PF13416 Bacterial extracellular solute-binding protein AMK58_02260 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_02265 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_02270 PF00005 ABC transporter AMK58_02270 PF08402 TOBE domain AMK58_02275 PF00043 Glutathione S-transferase, C-terminal domain AMK58_02275 PF02798 Glutathione S-transferase, N-terminal domain AMK58_02280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMK58_02285 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_02295 PF00270 DEAD/DEAH box helicase AMK58_02295 PF00271 Helicase conserved C-terminal domain AMK58_02300 PF01475 Ferric uptake regulator family AMK58_02310 PF07044 Protein of unknown function (DUF1329) AMK58_02315 PF00072 Response regulator receiver domain AMK58_02315 PF00512 His Kinase A (phospho-acceptor) domain AMK58_02315 PF00989 PAS fold AMK58_02315 PF01627 Hpt domain AMK58_02315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_02320 PF00672 HAMP domain AMK58_02320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_02320 PF08447 PAS fold AMK58_02320 PF12860 AMK58_02320 AMK58_02325 PF01740 STAS domain AMK58_02330 PF13581 Histidine kinase-like ATPase domain AMK58_02335 PF00072 Response regulator receiver domain AMK58_02335 PF07228 Stage II sporulation protein E (SpoIIE) AMK58_02340 PF09335 AMK58_02340 AMK58_02350 PF13470 AMK58_02350 AMK58_02355 PF00072 Response regulator receiver domain AMK58_02355 PF07228 Stage II sporulation protein E (SpoIIE) AMK58_02360 PF00072 Response regulator receiver domain AMK58_02360 PF07228 Stage II sporulation protein E (SpoIIE) AMK58_02365 PF13581 Histidine kinase-like ATPase domain AMK58_02370 PF13466 STAS domain AMK58_02375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_02380 PF00072 Response regulator receiver domain AMK58_02380 PF01339 CheB methylesterase AMK58_02385 PF03975 CheD chemotactic sensory transduction AMK58_02390 PF01739 CheR methyltransferase, SAM binding domain AMK58_02390 PF03705 CheR methyltransferase, all-alpha domain AMK58_02395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_02395 PF00672 HAMP domain AMK58_02395 PF08448 PAS fold AMK58_02400 PF01584 CheW-like domain AMK58_02405 PF01584 CheW-like domain AMK58_02405 PF01627 Hpt domain AMK58_02405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_02405 PF02895 Signal transducing histidine kinase, homodimeric domain AMK58_02410 PF00072 Response regulator receiver domain AMK58_02415 PF13466 STAS domain AMK58_02420 PF00512 His Kinase A (phospho-acceptor) domain AMK58_02420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_02430 PF00929 Exonuclease AMK58_02435 PF00072 Response regulator receiver domain AMK58_02440 PF05036 Sporulation related domain AMK58_02445 PF01522 Polysaccharide deacetylase AMK58_02450 PF04279 AMK58_02450 AMK58_02455 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) AMK58_02460 PF01048 Phosphorylase superfamily AMK58_02460 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AMK58_02465 PF00448 SRP54-type protein, GTPase domain AMK58_02465 PF02881 SRP54-type protein, helical bundle domain AMK58_02470 PF00919 Uncharacterized protein family UPF0004 AMK58_02470 PF04055 Radical SAM superfamily AMK58_02475 PF01678 Diaminopimelate epimerase AMK58_02485 PF04138 AMK58_02485 AMK58_02490 PF00535 Glycosyl transferase family 2 AMK58_02500 PF00694 Aconitase C-terminal domain AMK58_02505 PF00180 Isocitrate/isopropylmalate dehydrogenase AMK58_02510 PF10685 AMK58_02510 AMK58_02520 PF03328 HpcH/HpaI aldolase/citrate lyase family AMK58_02525 PF08543 Phosphomethylpyrimidine kinase AMK58_02530 PF03641 Possible lysine decarboxylase AMK58_02540 PF03969 AFG1-like ATPase AMK58_02545 PF00990 GGDEF domain AMK58_02545 PF11563 Protoglobin AMK58_02550 PF00512 His Kinase A (phospho-acceptor) domain AMK58_02550 PF00989 PAS fold AMK58_02550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_02550 PF02743 Cache domain AMK58_02555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMK58_02555 PF00364 Biotin-requiring enzyme AMK58_02555 PF02817 e3 binding domain AMK58_02560 PF00676 Dehydrogenase E1 component AMK58_02560 PF02779 Transketolase, pyrimidine binding domain AMK58_02560 PF16078 AMK58_02560 AMK58_02560 PF16870 AMK58_02560 AMK58_02565 PF00549 CoA-ligase AMK58_02565 PF02629 CoA binding domain AMK58_02570 PF00549 CoA-ligase AMK58_02570 PF08442 ATP-grasp domain AMK58_02575 PF00056 lactate/malate dehydrogenase, NAD binding domain AMK58_02575 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMK58_02585 PF10098 AMK58_02585 AMK58_02590 PF01921 tRNA synthetases class I (K) AMK58_02595 PF00893 Small Multidrug Resistance protein AMK58_02605 PF00912 Transglycosylase AMK58_02610 PF13307 Helicase C-terminal domain AMK58_02615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_02615 PF00672 HAMP domain AMK58_02615 PF12729 AMK58_02615 AMK58_02625 PF04204 Homoserine O-succinyltransferase AMK58_02635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_02635 PF12729 AMK58_02635 AMK58_02640 PF03547 AMK58_02640 AMK58_02645 PF05099 Tellurite resistance protein TerB AMK58_02650 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_02650 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMK58_02655 PF13673 Acetyltransferase (GNAT) domain AMK58_02660 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMK58_02660 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMK58_02670 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMK58_02675 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMK58_02680 PF00890 FAD binding domain AMK58_02680 PF02910 Fumarate reductase flavoprotein C-term AMK58_02685 PF13085 2Fe-2S iron-sulfur cluster binding domain AMK58_02685 PF13534 4Fe-4S dicluster domain AMK58_02695 PF01063 Aminotransferase class IV AMK58_02710 PF00717 Peptidase S24-like AMK58_02750 PF01223 DNA/RNA non-specific endonuclease AMK58_02760 PF01037 AsnC family AMK58_02760 PF13412 Winged helix-turn-helix DNA-binding AMK58_02765 PF07883 Cupin domain AMK58_02765 PF14518 Iron-containing redox enzyme AMK58_02770 PF00355 Rieske [2Fe-2S] domain AMK58_02775 PF13520 Amino acid permease AMK58_02780 PF13467 Ribbon-helix-helix domain AMK58_02790 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB AMK58_02795 PF00775 Dioxygenase AMK58_02805 PF03070 TENA/THI-4/PQQC family AMK58_02810 PF13811 AMK58_02810 AMK58_02815 PF00239 Resolvase, N terminal domain AMK58_02815 PF02796 Helix-turn-helix domain of resolvase AMK58_02825 PF00899 ThiF family AMK58_02830 PF13551 Winged helix-turn helix AMK58_02830 PF13592 AMK58_02830 AMK58_02835 PF13358 DDE superfamily endonuclease AMK58_02840 PF01734 Patatin-like phospholipase AMK58_02845 PF13586 AMK58_02845 AMK58_02850 PF00872 AMK58_02850 AMK58_02855 PF01610 AMK58_02855 AMK58_02860 PF13175 AAA ATPase domain AMK58_02865 PF13245 Part of AAA domain AMK58_02870 PF04248 Domain of unknown function (DUF427) AMK58_02875 PF00929 Exonuclease AMK58_02880 PF12833 Helix-turn-helix domain AMK58_02880 PF12852 Cupin AMK58_02885 PF07690 Major Facilitator Superfamily AMK58_02915 PF13701 AMK58_02915 AMK58_02920 PF13358 DDE superfamily endonuclease AMK58_02920 PF13384 Homeodomain-like domain AMK58_02925 PF05598 AMK58_02925 AMK58_02945 PF00563 EAL domain AMK58_02945 PF00990 GGDEF domain AMK58_02945 PF08448 PAS fold AMK58_02950 PF05239 PRC-barrel domain AMK58_02965 PF17212 AMK58_02965 AMK58_02980 PF12708 Pectate lyase superfamily protein AMK58_02995 PF07486 Cell Wall Hydrolase AMK58_03005 PF06108 Protein of unknown function (DUF952) AMK58_03010 PF01180 Dihydroorotate dehydrogenase AMK58_03015 PF00563 EAL domain AMK58_03020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMK58_03020 PF02824 TGS domain AMK58_03020 PF03129 Anticodon binding domain AMK58_03020 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMK58_03025 PF00707 Translation initiation factor IF-3, C-terminal domain AMK58_03025 PF05198 Translation initiation factor IF-3, N-terminal domain AMK58_03030 PF00905 Penicillin binding protein transpeptidase domain AMK58_03030 PF00912 Transglycosylase AMK58_03035 PF06347 Bacterial SH3 domain AMK58_03045 PF13467 Ribbon-helix-helix domain AMK58_03050 PF13242 HAD-hyrolase-like AMK58_03050 PF13344 Haloacid dehalogenase-like hydrolase AMK58_03055 PF00534 Glycosyl transferases group 1 AMK58_03055 PF13439 Glycosyltransferase Family 4 AMK58_03060 PF12146 Putative lysophospholipase AMK58_03075 PF03929 AMK58_03075 AMK58_03080 PF00593 TonB dependent receptor AMK58_03080 PF07715 TonB-dependent Receptor Plug Domain AMK58_03085 PF04773 FecR protein AMK58_03085 PF16220 AMK58_03085 AMK58_03085 PF16344 AMK58_03085 AMK58_03090 PF04542 Sigma-70 region 2 AMK58_03090 PF08281 Sigma-70, region 4 AMK58_03095 PF00884 Sulfatase AMK58_03100 PF13584 AMK58_03100 AMK58_03110 PF13519 von Willebrand factor type A domain AMK58_03115 PF00092 von Willebrand factor type A domain AMK58_03120 PF14316 AMK58_03120 AMK58_03125 PF01882 AMK58_03125 AMK58_03130 PF07726 ATPase family associated with various cellular activities (AAA) AMK58_03135 PF12710 haloacid dehalogenase-like hydrolase AMK58_03140 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_03155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_03155 PF03466 LysR substrate binding domain AMK58_03160 PF02515 CoA-transferase family III AMK58_03165 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_03170 PF13577 SnoaL-like domain AMK58_03175 PF01425 Amidase AMK58_03180 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_03185 PF13458 Periplasmic binding protein AMK58_03190 PF02653 AMK58_03190 AMK58_03195 PF02653 AMK58_03195 AMK58_03200 PF00005 ABC transporter AMK58_03200 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_03205 PF00005 ABC transporter AMK58_03220 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_03230 PF00005 ABC transporter AMK58_03235 PF00092 von Willebrand factor type A domain AMK58_03240 PF08238 Sel1 repeat AMK58_03245 PF10139 AMK58_03245 AMK58_03250 PF07520 AMK58_03250 AMK58_03260 PF13519 von Willebrand factor type A domain AMK58_03265 PF13365 Trypsin-like peptidase domain AMK58_03270 PF12850 Calcineurin-like phosphoesterase superfamily domain AMK58_03275 PF13773 Domain of unknown function (DUF4170) AMK58_03280 PF01292 Prokaryotic cytochrome b561 AMK58_03285 PF01322 Cytochrome C' AMK58_03290 PF00155 Aminotransferase class I and II AMK58_03295 PF06965 Na+/H+ antiporter 1 AMK58_03300 PF01566 AMK58_03300 AMK58_03310 PF00009 Elongation factor Tu GTP binding domain AMK58_03310 PF00679 Elongation factor G C-terminus AMK58_03310 PF03764 Elongation factor G, domain IV AMK58_03310 PF14492 Elongation Factor G, domain II AMK58_03315 PF02558 Ketopantoate reductase PanE/ApbA AMK58_03315 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMK58_03320 PF17200 AMK58_03320 AMK58_03325 PF00210 Ferritin-like domain AMK58_03330 PF07681 AMK58_03330 AMK58_03335 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_03340 PF13640 2OG-Fe(II) oxygenase superfamily AMK58_03350 PF06258 AMK58_03350 AMK58_03355 PF01037 AsnC family AMK58_03355 PF13412 Winged helix-turn-helix DNA-binding AMK58_03360 PF01738 Dienelactone hydrolase family AMK58_03365 PF01272 Transcription elongation factor, GreA/GreB, C-term AMK58_03365 PF03449 Transcription elongation factor, N-terminal AMK58_03370 PF02142 MGS-like domain AMK58_03370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMK58_03370 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMK58_03385 PF02308 AMK58_03385 AMK58_03390 PF05163 DinB family AMK58_03395 PF01580 FtsK/SpoIIIE family AMK58_03395 PF09397 Ftsk gamma domain AMK58_03415 PF01625 Peptide methionine sulfoxide reductase AMK58_03425 PF00588 SpoU rRNA Methylase family AMK58_03425 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMK58_03430 PF00106 short chain dehydrogenase AMK58_03435 PF09335 AMK58_03435 AMK58_03445 PF00034 Cytochrome c AMK58_03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_03455 PF00171 Aldehyde dehydrogenase family AMK58_03460 PF05610 AMK58_03460 AMK58_03465 PF08495 AMK58_03465 AMK58_03465 PF10442 AMK58_03465 AMK58_03470 PF00072 Response regulator receiver domain AMK58_03470 PF00512 His Kinase A (phospho-acceptor) domain AMK58_03470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_03470 PF08448 PAS fold AMK58_03470 PF12860 AMK58_03470 AMK58_03475 PF01061 AMK58_03475 AMK58_03480 PF00005 ABC transporter AMK58_03485 PF10282 Lactonase, 7-bladed beta-propeller AMK58_03490 PF13458 Periplasmic binding protein AMK58_03495 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_03500 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_03505 PF08770 Sulphur oxidation protein SoxZ AMK58_03505 PF13501 Sulfur oxidation protein SoxY AMK58_03510 PF00753 Metallo-beta-lactamase superfamily AMK58_03515 PF01011 PQQ enzyme repeat AMK58_03515 PF13360 PQQ-like domain AMK58_03520 PF00072 Response regulator receiver domain AMK58_03520 PF00196 Bacterial regulatory proteins, luxR family AMK58_03530 PF00005 ABC transporter AMK58_03535 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_03540 PF09084 NMT1/THI5 like AMK58_03550 PF00034 Cytochrome c AMK58_03555 PF07883 Cupin domain AMK58_03565 PF02600 Disulfide bond formation protein DsbB AMK58_03570 PF03232 AMK58_03570 AMK58_03575 PF14279 AMK58_03575 AMK58_03580 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMK58_03585 PF00072 Response regulator receiver domain AMK58_03585 PF00512 His Kinase A (phospho-acceptor) domain AMK58_03585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_03585 PF08448 PAS fold AMK58_03590 PF15916 AMK58_03590 AMK58_03595 PF00072 Response regulator receiver domain AMK58_03600 PF06798 AMK58_03600 AMK58_03600 PF08298 PrkA AAA domain AMK58_03605 PF04285 AMK58_03605 AMK58_03610 PF04293 AMK58_03610 AMK58_03615 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_03625 PF00271 Helicase conserved C-terminal domain AMK58_03625 PF04408 Helicase associated domain (HA2) AMK58_03625 PF08482 AMK58_03625 AMK58_03630 PF00005 ABC transporter AMK58_03630 PF09821 AMK58_03630 AMK58_03635 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_03640 PF00210 Ferritin-like domain AMK58_03650 PF00072 Response regulator receiver domain AMK58_03650 PF07228 Stage II sporulation protein E (SpoIIE) AMK58_03655 PF13466 STAS domain AMK58_03665 PF00570 HRDC domain AMK58_03670 PF01957 NfeD-like C-terminal, partner-binding AMK58_03675 PF01145 SPFH domain / Band 7 family AMK58_03680 PF01594 AMK58_03680 AMK58_03685 PF05981 AMK58_03685 AMK58_03690 PF05145 AMK58_03690 AMK58_03695 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMK58_03700 PF05013 N-formylglutamate amidohydrolase AMK58_03705 PF01513 ATP-NAD kinase AMK58_03710 PF04055 Radical SAM superfamily AMK58_03710 PF06463 Molybdenum Cofactor Synthesis C AMK58_03710 PF13353 4Fe-4S single cluster domain AMK58_03715 PF12838 4Fe-4S dicluster domain AMK58_03720 PF13420 Acetyltransferase (GNAT) domain AMK58_03725 PF00072 Response regulator receiver domain AMK58_03725 PF01627 Hpt domain AMK58_03730 PF06319 Protein of unknown function (DUF1052) AMK58_03735 PF00512 His Kinase A (phospho-acceptor) domain AMK58_03735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_03740 PF00072 Response regulator receiver domain AMK58_03740 PF00512 His Kinase A (phospho-acceptor) domain AMK58_03740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_03745 PF00512 His Kinase A (phospho-acceptor) domain AMK58_03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_03745 PF03924 CHASE domain AMK58_03745 PF08448 PAS fold AMK58_03750 PF01515 Phosphate acetyl/butaryl transferase AMK58_03750 PF01575 MaoC like domain AMK58_03755 PF00871 Acetokinase family AMK58_03765 PF00571 CBS domain AMK58_03775 PF11294 AMK58_03775 AMK58_03780 PF03733 AMK58_03780 AMK58_03795 PF00072 Response regulator receiver domain AMK58_03795 PF00196 Bacterial regulatory proteins, luxR family AMK58_03800 PF00072 Response regulator receiver domain AMK58_03800 PF00196 Bacterial regulatory proteins, luxR family AMK58_03805 PF00580 UvrD/REP helicase N-terminal domain AMK58_03805 PF13361 UvrD-like helicase C-terminal domain AMK58_03820 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AMK58_03825 PF05099 Tellurite resistance protein TerB AMK58_03830 PF00557 Metallopeptidase family M24 AMK58_03830 PF01321 Creatinase/Prolidase N-terminal domain AMK58_03830 PF16188 AMK58_03830 AMK58_03830 PF16189 AMK58_03830 AMK58_03835 PF00072 Response regulator receiver domain AMK58_03840 PF04344 Chemotaxis phosphatase, CheZ AMK58_03845 PF04344 Chemotaxis phosphatase, CheZ AMK58_03850 PF13525 Outer membrane lipoprotein AMK58_03855 PF02463 RecF/RecN/SMC N terminal domain AMK58_03860 PF16841 AMK58_03860 AMK58_03875 PF00533 BRCA1 C Terminus (BRCT) domain AMK58_03875 PF01653 NAD-dependent DNA ligase adenylation domain AMK58_03875 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMK58_03875 PF03120 NAD-dependent DNA ligase OB-fold domain AMK58_03875 PF12826 Helix-hairpin-helix motif AMK58_03880 PF01814 Hemerythrin HHE cation binding domain AMK58_03885 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMK58_03890 PF00091 Tubulin/FtsZ family, GTPase domain AMK58_03890 PF12327 FtsZ family, C-terminal domain AMK58_03895 PF02491 SHS2 domain inserted in FTSA AMK58_03895 PF14450 Cell division protein FtsA AMK58_03900 PF03799 Cell division protein FtsQ AMK58_03900 PF08478 POTRA domain, FtsQ-type AMK58_03905 PF01820 D-ala D-ala ligase N-terminus AMK58_03905 PF07478 D-ala D-ala ligase C-terminus AMK58_03910 PF01565 FAD binding domain AMK58_03910 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMK58_03915 PF01225 Mur ligase family, catalytic domain AMK58_03915 PF02875 Mur ligase family, glutamate ligase domain AMK58_03915 PF08245 Mur ligase middle domain AMK58_03925 PF03033 Glycosyltransferase family 28 N-terminal domain AMK58_03925 PF04101 Glycosyltransferase family 28 C-terminal domain AMK58_03930 PF01098 AMK58_03930 AMK58_03935 PF02875 Mur ligase family, glutamate ligase domain AMK58_03935 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AMK58_03935 PF08245 Mur ligase middle domain AMK58_03940 PF00953 Glycosyl transferase family 4 AMK58_03940 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMK58_03945 PF01225 Mur ligase family, catalytic domain AMK58_03945 PF02875 Mur ligase family, glutamate ligase domain AMK58_03945 PF08245 Mur ligase middle domain AMK58_03950 PF01225 Mur ligase family, catalytic domain AMK58_03950 PF02875 Mur ligase family, glutamate ligase domain AMK58_03950 PF08245 Mur ligase middle domain AMK58_03955 PF00905 Penicillin binding protein transpeptidase domain AMK58_03955 PF03717 Penicillin-binding Protein dimerisation domain AMK58_03965 PF01795 MraW methylase family AMK58_03970 PF02381 MraZ protein AMK58_03975 PF01510 N-acetylmuramoyl-L-alanine amidase AMK58_03980 PF00892 EamA-like transporter family AMK58_03985 PF00005 ABC transporter AMK58_03985 PF16326 AMK58_03985 AMK58_03990 PF00226 DnaJ domain AMK58_03990 PF05099 Tellurite resistance protein TerB AMK58_03995 PF00583 Acetyltransferase (GNAT) family AMK58_04000 PF01968 Hydantoinase/oxoprolinase AMK58_04000 PF02538 AMK58_04000 AMK58_04000 PF05378 AMK58_04000 AMK58_04005 PF01565 FAD binding domain AMK58_04005 PF02913 FAD linked oxidases, C-terminal domain AMK58_04010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_04010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMK58_04025 PF00072 Response regulator receiver domain AMK58_04025 PF00512 His Kinase A (phospho-acceptor) domain AMK58_04025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_04030 PF02627 Carboxymuconolactone decarboxylase family AMK58_04050 PF00348 Polyprenyl synthetase AMK58_04055 PF09413 Domain of unknown function (DUF2007) AMK58_04060 PF05175 Methyltransferase small domain AMK58_04065 PF01343 Peptidase family S49 AMK58_04070 PF15919 AMK58_04070 AMK58_04080 PF02091 Glycyl-tRNA synthetase alpha subunit AMK58_04085 PF02092 AMK58_04085 AMK58_04085 PF05746 DALR anticodon binding domain AMK58_04090 PF00682 HMGL-like AMK58_04090 PF08502 LeuA allosteric (dimerisation) domain AMK58_04095 PF04172 AMK58_04095 AMK58_04100 PF03788 AMK58_04100 AMK58_04105 PF01738 Dienelactone hydrolase family AMK58_04110 PF12616 AMK58_04110 AMK58_04115 PF03364 Polyketide cyclase / dehydrase and lipid transport AMK58_04120 PF00107 Zinc-binding dehydrogenase AMK58_04120 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_04120 PF13823 Alcohol dehydrogenase GroES-associated AMK58_04130 PF00128 Alpha amylase, catalytic domain AMK58_04130 PF11941 Domain of unknown function (DUF3459) AMK58_04135 PF06202 Amylo-alpha-1,6-glucosidase AMK58_04135 PF12439 AMK58_04135 AMK58_04140 PF00989 PAS fold AMK58_04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_04155 PF01522 Polysaccharide deacetylase AMK58_04160 PF11154 AMK58_04160 AMK58_04165 PF00313 'Cold-shock' DNA-binding domain AMK58_04165 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMK58_04170 PF01471 Putative peptidoglycan binding domain AMK58_04170 PF03734 L,D-transpeptidase catalytic domain AMK58_04175 PF05951 AMK58_04175 AMK58_04190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04190 PF00672 HAMP domain AMK58_04205 PF00350 Dynamin family AMK58_04210 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_04215 PF01220 Dehydroquinase class II AMK58_04220 PF00364 Biotin-requiring enzyme AMK58_04225 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMK58_04225 PF02785 Biotin carboxylase C-terminal domain AMK58_04225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMK58_04230 PF00445 Ribonuclease T2 family AMK58_04235 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMK58_04240 PF09923 AMK58_04240 AMK58_04250 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_04250 PF02861 Clp amino terminal domain AMK58_04250 PF07724 AAA domain (Cdc48 subfamily) AMK58_04250 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_04255 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMK58_04260 PF09361 AMK58_04260 AMK58_04265 PF09361 AMK58_04265 AMK58_04270 PF00227 Proteasome subunit AMK58_04280 PF00768 D-alanyl-D-alanine carboxypeptidase AMK58_04280 PF05036 Sporulation related domain AMK58_04285 PF12849 PBP superfamily domain AMK58_04290 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_04295 PF02634 FdhD/NarQ family AMK58_04300 PF12804 MobA-like NTP transferase domain AMK58_04305 PF11749 AMK58_04305 AMK58_04310 PF11748 AMK58_04310 AMK58_04315 PF02613 Nitrate reductase delta subunit AMK58_04325 PF00384 Molybdopterin oxidoreductase AMK58_04325 PF01568 Molydopterin dinucleotide binding domain AMK58_04325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_04330 PF13247 4Fe-4S dicluster domain AMK58_04340 PF01292 Prokaryotic cytochrome b561 AMK58_04350 PF00400 WD domain, G-beta repeat AMK58_04355 PF00596 Class II Aldolase and Adducin N-terminal domain AMK58_04360 PF00672 HAMP domain AMK58_04360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_04365 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMK58_04370 PF00430 ATP synthase B/B' CF(0) AMK58_04375 PF00430 ATP synthase B/B' CF(0) AMK58_04380 PF00137 ATP synthase subunit C AMK58_04385 PF00119 ATP synthase A chain AMK58_04390 PF09527 AMK58_04390 AMK58_04395 PF02630 SCO1/SenC AMK58_04405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04405 PF00672 HAMP domain AMK58_04405 PF01814 Hemerythrin HHE cation binding domain AMK58_04405 PF17200 AMK58_04405 AMK58_04410 PF02562 PhoH-like protein AMK58_04415 PF03775 Septum formation inhibitor MinC, C-terminal domain AMK58_04415 PF05209 Septum formation inhibitor MinC, N-terminal domain AMK58_04420 PF13614 AAA domain AMK58_04425 PF03776 Septum formation topological specificity factor MinE AMK58_04430 PF07593 AMK58_04430 AMK58_04430 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AMK58_04435 PF08447 PAS fold AMK58_04440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04450 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMK58_04450 PF13378 Enolase C-terminal domain-like AMK58_04455 PF07883 Cupin domain AMK58_04460 PF00266 Aminotransferase class-V AMK58_04465 PF13524 Glycosyl transferases group 1 AMK58_04470 PF01329 Pterin 4 alpha carbinolamine dehydratase AMK58_04475 PF03167 Uracil DNA glycosylase superfamily AMK58_04480 PF02685 Glucokinase AMK58_04485 PF00982 Glycosyltransferase family 20 AMK58_04490 PF05013 N-formylglutamate amidohydrolase AMK58_04500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04500 PF00672 HAMP domain AMK58_04500 PF02743 Cache domain AMK58_04505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04505 PF00672 HAMP domain AMK58_04505 PF07238 PilZ domain AMK58_04510 PF01274 Malate synthase AMK58_04515 PF13538 UvrD-like helicase C-terminal domain AMK58_04515 PF13604 AAA domain AMK58_04515 PF14490 Helix-hairpin-helix containing domain AMK58_04515 PF14520 Helix-hairpin-helix domain AMK58_04520 PF00313 'Cold-shock' DNA-binding domain AMK58_04525 PF00027 Cyclic nucleotide-binding domain AMK58_04525 PF13545 Crp-like helix-turn-helix domain AMK58_04530 PF00072 Response regulator receiver domain AMK58_04530 PF00512 His Kinase A (phospho-acceptor) domain AMK58_04530 PF01627 Hpt domain AMK58_04530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_04530 PF11849 AMK58_04530 AMK58_04535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04535 PF00672 HAMP domain AMK58_04535 PF02203 Tar ligand binding domain homologue AMK58_04535 PF07238 PilZ domain AMK58_04545 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AMK58_04550 PF01494 FAD binding domain AMK58_04555 PF00766 Electron transfer flavoprotein FAD-binding domain AMK58_04555 PF01012 Electron transfer flavoprotein domain AMK58_04560 PF01012 Electron transfer flavoprotein domain AMK58_04565 PF03206 AMK58_04565 AMK58_04570 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_04575 PF00682 HMGL-like AMK58_04580 PF00266 Aminotransferase class-V AMK58_04585 PF01106 NifU-like domain AMK58_04585 PF01592 NifU-like N terminal domain AMK58_04585 PF04324 BFD-like [2Fe-2S] binding domain AMK58_04590 PF01521 Iron-sulphur cluster biosynthesis AMK58_04600 PF04891 AMK58_04600 AMK58_04605 PF14697 4Fe-4S dicluster domain AMK58_04610 PF05082 Rop-like AMK58_04615 PF03270 Protein of unknown function, DUF269 AMK58_04620 PF02579 Dinitrogenase iron-molybdenum cofactor AMK58_04625 PF00148 Nitrogenase component 1 type Oxidoreductase AMK58_04630 PF00148 Nitrogenase component 1 type Oxidoreductase AMK58_04635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_04635 PF08447 PAS fold AMK58_04635 PF13426 PAS domain AMK58_04640 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_04645 PF02082 Transcriptional regulator AMK58_04650 PF00148 Nitrogenase component 1 type Oxidoreductase AMK58_04650 PF11844 Domain of unknown function (DUF3364) AMK58_04655 PF00148 Nitrogenase component 1 type Oxidoreductase AMK58_04660 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AMK58_04670 PF07357 AMK58_04670 AMK58_04675 PF03747 ADP-ribosylglycohydrolase AMK58_04680 PF03960 ArsC family AMK58_04685 PF13230 Glutamine amidotransferases class-II AMK58_04690 PF02525 Flavodoxin-like fold AMK58_04695 PF13289 AMK58_04695 AMK58_04700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMK58_04710 PF06988 NifT/FixU protein AMK58_04715 PF00266 Aminotransferase class-V AMK58_04720 PF04319 AMK58_04720 AMK58_04725 PF04319 AMK58_04725 AMK58_04730 PF01816 Leucine rich repeat variant AMK58_04730 PF05484 LRV protein FeS4 cluster AMK58_04740 PF00037 4Fe-4S binding domain AMK58_04745 PF02579 Dinitrogenase iron-molybdenum cofactor AMK58_04745 PF04055 Radical SAM superfamily AMK58_04750 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_04750 PF00498 FHA domain AMK58_04760 PF00158 Sigma-54 interaction domain AMK58_04760 PF02954 Bacterial regulatory protein, Fis family AMK58_04760 PF13185 GAF domain AMK58_04765 PF00440 Bacterial regulatory proteins, tetR family AMK58_04765 PF16859 AMK58_04765 AMK58_04770 PF13437 HlyD family secretion protein AMK58_04770 PF13533 Biotin-lipoyl like AMK58_04775 PF00005 ABC transporter AMK58_04785 PF12698 ABC-2 family transporter protein AMK58_04790 PF03411 Penicillin-insensitive murein endopeptidase AMK58_04795 PF02353 Mycolic acid cyclopropane synthetase AMK58_04800 PF00444 Ribosomal protein L36 AMK58_04805 PF01565 FAD binding domain AMK58_04805 PF02913 FAD linked oxidases, C-terminal domain AMK58_04810 PF01565 FAD binding domain AMK58_04815 PF02754 AMK58_04815 AMK58_04815 PF12838 4Fe-4S dicluster domain AMK58_04835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_04835 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_04835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_04835 PF12418 AMK58_04835 AMK58_04835 PF12806 AMK58_04835 AMK58_04850 PF01565 FAD binding domain AMK58_04850 PF02913 FAD linked oxidases, C-terminal domain AMK58_04855 PF01300 Telomere recombination AMK58_04855 PF03481 Putative GTP-binding controlling metal-binding AMK58_04860 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_04865 PF04577 AMK58_04865 AMK58_04870 PF00578 AhpC/TSA family AMK58_04875 PF03710 Glutamate-ammonia ligase adenylyltransferase AMK58_04875 PF08335 GlnD PII-uridylyltransferase AMK58_04880 PF13116 AMK58_04880 AMK58_04880 PF13502 AMK58_04880 AMK58_04885 PF00579 tRNA synthetases class I (W and Y) AMK58_04890 PF03702 Uncharacterised protein family (UPF0075) AMK58_04895 PF00326 Prolyl oligopeptidase family AMK58_04895 PF12146 Putative lysophospholipase AMK58_04900 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_04905 PF02082 Transcriptional regulator AMK58_04910 PF00266 Aminotransferase class-V AMK58_04920 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_04925 PF03054 tRNA methyl transferase AMK58_04935 PF13374 Tetratricopeptide repeat AMK58_04935 PF13414 TPR repeat AMK58_04935 PF13432 Tetratricopeptide repeat AMK58_04940 PF13437 HlyD family secretion protein AMK58_04940 PF13533 Biotin-lipoyl like AMK58_04945 PF00005 ABC transporter AMK58_04945 PF00664 ABC transporter transmembrane region AMK58_04950 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_04955 PF11512 Agrobacterium tumefaciens protein Atu4866 AMK58_04960 PF02627 Carboxymuconolactone decarboxylase family AMK58_04965 PF00106 short chain dehydrogenase AMK58_04970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_04970 PF03466 LysR substrate binding domain AMK58_04975 PF13847 Methyltransferase domain AMK58_04980 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_04980 PF13753 Putative flagellar system-associated repeat AMK58_04980 PF14252 AMK58_04980 AMK58_04985 PF00072 Response regulator receiver domain AMK58_04985 PF00512 His Kinase A (phospho-acceptor) domain AMK58_04985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_04995 PF00072 Response regulator receiver domain AMK58_05010 PF04891 AMK58_05010 AMK58_05015 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) AMK58_05020 PF01894 Uncharacterised protein family UPF0047 AMK58_05025 PF06803 AMK58_05025 AMK58_05030 PF01471 Putative peptidoglycan binding domain AMK58_05030 PF13406 Transglycosylase SLT domain AMK58_05040 PF01904 Protein of unknown function DUF72 AMK58_05045 PF10101 AMK58_05045 AMK58_05050 PF00465 Iron-containing alcohol dehydrogenase AMK58_05055 PF07484 Phage Tail Collar Domain AMK58_05060 PF07484 Phage Tail Collar Domain AMK58_05065 PF13524 Glycosyl transferases group 1 AMK58_05070 PF13692 Glycosyl transferases group 1 AMK58_05075 PF00583 Acetyltransferase (GNAT) family AMK58_05080 PF00583 Acetyltransferase (GNAT) family AMK58_05095 PF00206 Lyase AMK58_05095 PF10415 Fumarase C C-terminus AMK58_05100 PF13467 Ribbon-helix-helix domain AMK58_05105 PF04654 AMK58_05105 AMK58_05110 PF00563 EAL domain AMK58_05115 PF02222 ATP-grasp domain AMK58_05120 PF00731 AIR carboxylase AMK58_05125 PF04325 Protein of unknown function (DUF465) AMK58_05130 PF00365 Phosphofructokinase AMK58_05135 PF09523 AMK58_05135 AMK58_05140 PF13302 Acetyltransferase (GNAT) domain AMK58_05150 PF13432 Tetratricopeptide repeat AMK58_05155 PF00460 Flagella basal body rod protein AMK58_05155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_05160 PF00484 Carbonic anhydrase AMK58_05165 PF02441 Flavoprotein AMK58_05170 PF06242 AMK58_05170 AMK58_05175 PF00107 Zinc-binding dehydrogenase AMK58_05175 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_05180 PF06698 AMK58_05180 AMK58_05185 PF09955 AMK58_05185 AMK58_05190 PF13770 AMK58_05190 AMK58_05200 PF04380 AMK58_05200 AMK58_05205 PF10722 Putative bacterial sensory transduction regulator AMK58_05210 PF03807 NADP oxidoreductase coenzyme F420-dependent AMK58_05210 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMK58_05215 PF04073 Aminoacyl-tRNA editing domain AMK58_05220 PF00501 AMP-binding enzyme AMK58_05220 PF13193 AMP-binding enzyme C-terminal domain AMK58_05225 PF13527 Acetyltransferase (GNAT) domain AMK58_05225 PF13530 Sterol carrier protein domain AMK58_05230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_05230 PF00672 HAMP domain AMK58_05230 PF16591 AMK58_05230 AMK58_05235 PF04932 AMK58_05235 AMK58_05240 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMK58_05245 PF03706 AMK58_05245 AMK58_05250 PF08331 AMK58_05250 AMK58_05250 PF13484 AMK58_05250 AMK58_05255 PF14489 QueF-like protein AMK58_05260 PF01702 Queuine tRNA-ribosyltransferase AMK58_05265 PF02547 Queuosine biosynthesis protein AMK58_05270 PF03109 AMK58_05270 AMK58_05275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_05275 PF00672 HAMP domain AMK58_05275 PF12729 AMK58_05275 AMK58_05280 PF01565 FAD binding domain AMK58_05280 PF08031 Berberine and berberine like AMK58_05285 PF01814 Hemerythrin HHE cation binding domain AMK58_05290 PF01432 Peptidase family M3 AMK58_05290 PF08439 Oligopeptidase F AMK58_05300 PF10503 Esterase PHB depolymerase AMK58_05305 PF00501 AMP-binding enzyme AMK58_05305 PF13193 AMP-binding enzyme C-terminal domain AMK58_05305 PF16177 AMK58_05305 AMK58_05310 PF11740 AMK58_05310 AMK58_05315 PF04542 Sigma-70 region 2 AMK58_05315 PF08281 Sigma-70, region 4 AMK58_05330 PF13432 Tetratricopeptide repeat AMK58_05340 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMK58_05340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_05345 PF00072 Response regulator receiver domain AMK58_05350 PF00571 CBS domain AMK58_05355 PF01545 Cation efflux family AMK58_05365 PF00117 Glutamine amidotransferase class-I AMK58_05365 PF00425 chorismate binding enzyme AMK58_05365 PF04715 Anthranilate synthase component I, N terminal region AMK58_05370 PF10073 AMK58_05370 AMK58_05375 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMK58_05375 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMK58_05380 PF12769 Domain of unknown function (DUF3814) AMK58_05385 PF02233 NAD(P) transhydrogenase beta subunit AMK58_05390 PF07045 Protein of unknown function (DUF1330) AMK58_05395 PF02548 Ketopantoate hydroxymethyltransferase AMK58_05400 PF01165 Ribosomal protein S21 AMK58_05405 PF01327 Polypeptide deformylase AMK58_05410 PF08511 COQ9 AMK58_05415 PF04993 TfoX N-terminal domain AMK58_05420 PF04386 Stringent starvation protein B AMK58_05425 PF02511 Thymidylate synthase complementing protein AMK58_05430 PF13176 Tetratricopeptide repeat AMK58_05430 PF13181 Tetratricopeptide repeat AMK58_05430 PF13432 Tetratricopeptide repeat AMK58_05430 PF13844 Glycosyl transferase family 41 AMK58_05435 PF06170 AMK58_05435 AMK58_05445 PF04392 ABC transporter substrate binding protein AMK58_05450 PF02653 AMK58_05450 AMK58_05455 PF00005 ABC transporter AMK58_05460 PF00999 Sodium/hydrogen exchanger family AMK58_05460 PF02254 TrkA-N domain AMK58_05465 PF01883 Domain of unknown function DUF59 AMK58_05465 PF10609 ParA/MinD ATPase like AMK58_05470 PF01145 SPFH domain / Band 7 family AMK58_05475 PF01145 SPFH domain / Band 7 family AMK58_05480 PF09838 AMK58_05480 AMK58_05485 PF00595 PDZ domain (Also known as DHR or GLGF) AMK58_05485 PF13180 PDZ domain AMK58_05485 PF13365 Trypsin-like peptidase domain AMK58_05490 PF12710 haloacid dehalogenase-like hydrolase AMK58_05495 PF13473 Cupredoxin-like domain AMK58_05500 PF01715 IPP transferase AMK58_05505 PF00155 Aminotransferase class I and II AMK58_05510 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_05510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_05510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_05515 PF10369 Small subunit of acetolactate synthase AMK58_05515 PF13710 ACT domain AMK58_05520 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMK58_05520 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AMK58_05525 PF01895 PhoU domain AMK58_05530 PF03350 AMK58_05530 AMK58_05535 PF06723 MreB/Mbl protein AMK58_05540 PF04085 rod shape-determining protein MreC AMK58_05545 PF04093 AMK58_05545 AMK58_05550 PF00905 Penicillin binding protein transpeptidase domain AMK58_05550 PF03717 Penicillin-binding Protein dimerisation domain AMK58_05555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_05555 PF12729 AMK58_05555 AMK58_05560 PF09335 AMK58_05560 AMK58_05565 PF01810 AMK58_05565 AMK58_05570 PF02608 Basic membrane protein AMK58_05575 PF00005 ABC transporter AMK58_05580 PF02653 AMK58_05580 AMK58_05585 PF02653 AMK58_05585 AMK58_05590 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMK58_05595 PF01048 Phosphorylase superfamily AMK58_05600 PF01791 DeoC/LacD family aldolase AMK58_05605 PF00591 Glycosyl transferase family, a/b domain AMK58_05605 PF02885 Glycosyl transferase family, helical bundle domain AMK58_05605 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AMK58_05615 PF00892 EamA-like transporter family AMK58_05620 PF13466 STAS domain AMK58_05625 PF13458 Periplasmic binding protein AMK58_05630 PF02653 AMK58_05630 AMK58_05635 PF00005 ABC transporter AMK58_05635 PF02653 AMK58_05635 AMK58_05635 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_05640 PF00005 ABC transporter AMK58_05650 PF00654 Voltage gated chloride channel AMK58_05655 PF03976 Polyphosphate kinase 2 (PPK2) AMK58_05660 PF03976 Polyphosphate kinase 2 (PPK2) AMK58_05665 PF00128 Alpha amylase, catalytic domain AMK58_05665 PF11896 Domain of unknown function (DUF3416) AMK58_05665 PF14701 glucanotransferase domain of human glycogen debranching enzyme AMK58_05675 PF00563 EAL domain AMK58_05680 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_05680 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_05685 PF02586 Uncharacterised ACR, COG2135 AMK58_05690 PF00565 Staphylococcal nuclease homologue AMK58_05695 PF00072 Response regulator receiver domain AMK58_05695 PF08281 Sigma-70, region 4 AMK58_05700 PF04226 AMK58_05700 AMK58_05705 PF00834 Ribulose-phosphate 3 epimerase family AMK58_05710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_05715 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_05715 PF13602 Zinc-binding dehydrogenase AMK58_05720 PF01638 HxlR-like helix-turn-helix AMK58_05725 PF05940 AMK58_05725 AMK58_05730 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_05730 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMK58_05735 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_05740 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_05745 PF08241 Methyltransferase domain AMK58_05750 PF13419 Haloacid dehalogenase-like hydrolase AMK58_05755 PF05940 AMK58_05755 AMK58_05765 PF00994 Probable molybdopterin binding domain AMK58_05770 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMK58_05770 PF12801 AMK58_05770 AMK58_05770 PF13746 4Fe-4S dicluster domain AMK58_05775 PF04304 AMK58_05775 AMK58_05780 PF09335 AMK58_05780 AMK58_05785 PF00512 His Kinase A (phospho-acceptor) domain AMK58_05785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_05790 PF00224 Pyruvate kinase, barrel domain AMK58_05790 PF02887 Pyruvate kinase, alpha/beta domain AMK58_05795 PF00416 Ribosomal protein S13/S18 AMK58_05800 PF00411 Ribosomal protein S11 AMK58_05805 PF01000 RNA polymerase Rpb3/RpoA insert domain AMK58_05805 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMK58_05805 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMK58_05810 PF01196 Ribosomal protein L17 AMK58_05815 PF09335 AMK58_05815 AMK58_05830 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_05830 PF12002 MgsA AAA+ ATPase C terminal AMK58_05830 PF16193 AMK58_05830 AMK58_05840 PF02537 AMK58_05840 AMK58_05845 PF00849 RNA pseudouridylate synthase AMK58_05850 PF00392 Bacterial regulatory proteins, gntR family AMK58_05850 PF07729 FCD domain AMK58_05855 PF03594 AMK58_05855 AMK58_05860 PF13419 Haloacid dehalogenase-like hydrolase AMK58_05865 PF07542 ATP12 chaperone protein AMK58_05870 PF03640 AMK58_05870 AMK58_05875 PF05239 PRC-barrel domain AMK58_05880 PF01571 Aminomethyltransferase folate-binding domain AMK58_05880 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMK58_05885 PF01272 Transcription elongation factor, GreA/GreB, C-term AMK58_05885 PF14760 Rnk N-terminus AMK58_05890 PF00005 ABC transporter AMK58_05895 PF02653 AMK58_05895 AMK58_05900 PF02653 AMK58_05900 AMK58_05905 PF02608 Basic membrane protein AMK58_05930 PF00072 Response regulator receiver domain AMK58_05930 PF00990 GGDEF domain AMK58_05935 PF00156 Phosphoribosyl transferase domain AMK58_05935 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMK58_05940 PF00753 Metallo-beta-lactamase superfamily AMK58_05940 PF07521 RNA-metabolising metallo-beta-lactamase AMK58_05940 PF10996 Beta-Casp domain AMK58_05950 PF00563 EAL domain AMK58_05950 PF00990 GGDEF domain AMK58_05950 PF03924 CHASE domain AMK58_05950 PF08448 PAS fold AMK58_05955 PF00106 short chain dehydrogenase AMK58_05960 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_05960 PF12867 DinB superfamily AMK58_05965 PF10017 AMK58_05965 AMK58_05970 PF01814 Hemerythrin HHE cation binding domain AMK58_05975 PF00809 Pterin binding enzyme AMK58_05980 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMK58_05980 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMK58_05980 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMK58_05980 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMK58_05985 PF08543 Phosphomethylpyrimidine kinase AMK58_05990 PF00155 Aminotransferase class I and II AMK58_05990 PF00392 Bacterial regulatory proteins, gntR family AMK58_05995 PF11127 Protein of unknown function (DUF2892) AMK58_06005 PF01027 Inhibitor of apoptosis-promoting Bax1 AMK58_06010 PF10011 Predicted membrane protein (DUF2254) AMK58_06015 PF06568 AMK58_06015 AMK58_06020 PF13673 Acetyltransferase (GNAT) domain AMK58_06025 PF02567 Phenazine biosynthesis-like protein AMK58_06030 PF01575 MaoC like domain AMK58_06035 PF00012 Hsp70 protein AMK58_06040 PF00120 Glutamine synthetase, catalytic domain AMK58_06040 PF03951 Glutamine synthetase, beta-Grasp domain AMK58_06045 PF00543 Nitrogen regulatory protein P-II AMK58_06060 PF01256 Carbohydrate kinase AMK58_06060 PF03853 YjeF-related protein N-terminus AMK58_06065 PF05292 Malonyl-CoA decarboxylase (MCD) AMK58_06065 PF17408 AMK58_06065 AMK58_06075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMK58_06075 PF05697 Bacterial trigger factor protein (TF) AMK58_06075 PF05698 Bacterial trigger factor protein (TF) C-terminus AMK58_06080 PF00574 Clp protease AMK58_06085 PF06689 ClpX C4-type zinc finger AMK58_06085 PF07724 AAA domain (Cdc48 subfamily) AMK58_06085 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_06090 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_06090 PF02190 ATP-dependent protease La (LON) domain AMK58_06090 PF05362 Lon protease (S16) C-terminal proteolytic domain AMK58_06095 PF00216 Bacterial DNA-binding protein AMK58_06110 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMK58_06115 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMK58_06120 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMK58_06125 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMK58_06130 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AMK58_06135 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMK58_06135 PF10531 SLBB domain AMK58_06135 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMK58_06140 PF00384 Molybdopterin oxidoreductase AMK58_06140 PF09326 AMK58_06140 AMK58_06140 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMK58_06140 PF13510 2Fe-2S iron-sulfur cluster binding domain AMK58_06145 PF00146 NADH dehydrogenase AMK58_06150 PF12838 4Fe-4S dicluster domain AMK58_06155 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMK58_06160 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMK58_06165 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMK58_06165 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMK58_06165 PF06455 AMK58_06165 AMK58_06170 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMK58_06170 PF01059 AMK58_06170 AMK58_06175 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMK58_06180 PF02237 Biotin protein ligase C terminal domain AMK58_06180 PF16917 AMK58_06180 AMK58_06185 PF03309 Type III pantothenate kinase AMK58_06190 PF07521 RNA-metabolising metallo-beta-lactamase AMK58_06190 PF12706 Beta-lactamase superfamily domain AMK58_06195 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMK58_06200 PF07330 AMK58_06200 AMK58_06205 PF03352 Methyladenine glycosylase AMK58_06220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMK58_06220 PF03129 Anticodon binding domain AMK58_06225 PF02687 AMK58_06225 AMK58_06225 PF12704 MacB-like periplasmic core domain AMK58_06230 PF00005 ABC transporter AMK58_06235 PF01738 Dienelactone hydrolase family AMK58_06240 PF00892 EamA-like transporter family AMK58_06250 PF02811 PHP domain AMK58_06250 PF07733 Bacterial DNA polymerase III alpha subunit AMK58_06250 PF14579 Helix-hairpin-helix motif AMK58_06255 PF00318 Ribosomal protein S2 AMK58_06260 PF00889 Elongation factor TS AMK58_06265 PF00696 Amino acid kinase family AMK58_06270 PF01765 Ribosome recycling factor AMK58_06275 PF01255 Putative undecaprenyl diphosphate synthase AMK58_06280 PF01148 Cytidylyltransferase family AMK58_06285 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMK58_06285 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AMK58_06285 PF13288 DXP reductoisomerase C-terminal domain AMK58_06290 PF00595 PDZ domain (Also known as DHR or GLGF) AMK58_06290 PF02163 Peptidase family M50 AMK58_06295 PF01103 Surface antigen AMK58_06295 PF07244 Surface antigen variable number repeat AMK58_06300 PF03938 Outer membrane protein (OmpH-like) AMK58_06305 PF07977 FabA-like domain AMK58_06310 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_06310 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMK58_06315 PF06230 Protein of unknown function (DUF1009) AMK58_06320 PF02684 AMK58_06320 AMK58_06325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMK58_06330 PF00583 Acetyltransferase (GNAT) family AMK58_06335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_06335 PF03466 LysR substrate binding domain AMK58_06340 PF00043 Glutathione S-transferase, C-terminal domain AMK58_06340 PF02798 Glutathione S-transferase, N-terminal domain AMK58_06350 PF00285 Citrate synthase AMK58_06355 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMK58_06360 PF03772 AMK58_06360 AMK58_06360 PF13567 AMK58_06360 AMK58_06365 PF00717 Peptidase S24-like AMK58_06365 PF01726 LexA DNA binding domain AMK58_06370 PF00994 Probable molybdopterin binding domain AMK58_06370 PF03453 MoeA N-terminal region (domain I and II) AMK58_06370 PF03454 MoeA C-terminal region (domain IV) AMK58_06375 PF01967 MoaC family AMK58_06380 PF00583 Acetyltransferase (GNAT) family AMK58_06385 PF00218 Indole-3-glycerol phosphate synthase AMK58_06390 PF00591 Glycosyl transferase family, a/b domain AMK58_06390 PF02885 Glycosyl transferase family, helical bundle domain AMK58_06395 PF00117 Glutamine amidotransferase class-I AMK58_06405 PF04748 Divergent polysaccharide deacetylase AMK58_06410 PF00403 Heavy-metal-associated domain AMK58_06420 PF00425 chorismate binding enzyme AMK58_06420 PF04715 Anthranilate synthase component I, N terminal region AMK58_06425 PF13145 PPIC-type PPIASE domain AMK58_06425 PF13624 SurA N-terminal domain AMK58_06430 PF00121 Triosephosphate isomerase AMK58_06435 PF03840 Preprotein translocase SecG subunit AMK58_06440 PF00117 Glutamine amidotransferase class-I AMK58_06440 PF06418 CTP synthase N-terminus AMK58_06445 PF01738 Dienelactone hydrolase family AMK58_06450 PF00793 DAHP synthetase I family AMK58_06455 PF12836 Helix-hairpin-helix motif AMK58_06460 PF04055 Radical SAM superfamily AMK58_06460 PF13186 Iron-sulfur cluster-binding domain AMK58_06460 PF13353 4Fe-4S single cluster domain AMK58_06465 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMK58_06470 PF03070 TENA/THI-4/PQQC family AMK58_06475 PF12706 Beta-lactamase superfamily domain AMK58_06480 PF08042 AMK58_06480 AMK58_06485 PF00113 Enolase, C-terminal TIM barrel domain AMK58_06485 PF03952 Enolase, N-terminal domain AMK58_06490 PF13174 Tetratricopeptide repeat AMK58_06490 PF13432 Tetratricopeptide repeat AMK58_06495 PF01171 PP-loop family AMK58_06500 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_06500 PF01434 Peptidase family M41 AMK58_06500 PF06480 FtsH Extracellular AMK58_06505 PF01694 Rhomboid family AMK58_06510 PF09834 AMK58_06510 AMK58_06515 PF08534 Redoxin AMK58_06520 PF00221 Aromatic amino acid lyase AMK58_06525 PF00005 ABC transporter AMK58_06525 PF00664 ABC transporter transmembrane region AMK58_06530 PF13437 HlyD family secretion protein AMK58_06530 PF13533 Biotin-lipoyl like AMK58_06535 PF00072 Response regulator receiver domain AMK58_06550 PF12697 Alpha/beta hydrolase family AMK58_06555 PF03023 AMK58_06555 AMK58_06560 PF00581 Rhodanese-like domain AMK58_06565 PF01052 Surface presentation of antigens (SPOA) AMK58_06570 PF10073 AMK58_06570 AMK58_06575 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_06580 PF00155 Aminotransferase class I and II AMK58_06585 PF00574 Clp protease AMK58_06595 PF00005 ABC transporter AMK58_06600 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_06605 PF09084 NMT1/THI5 like AMK58_06610 PF03960 ArsC family AMK58_06615 PF00072 Response regulator receiver domain AMK58_06615 PF00512 His Kinase A (phospho-acceptor) domain AMK58_06615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_06615 PF12860 AMK58_06615 AMK58_06615 PF13188 PAS domain AMK58_06620 PF00072 Response regulator receiver domain AMK58_06625 PF00072 Response regulator receiver domain AMK58_06625 PF00512 His Kinase A (phospho-acceptor) domain AMK58_06625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_06625 PF08448 PAS fold AMK58_06625 PF12860 AMK58_06625 AMK58_06625 PF13188 PAS domain AMK58_06630 PF00072 Response regulator receiver domain AMK58_06635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_06635 PF17200 AMK58_06635 AMK58_06640 PF12697 Alpha/beta hydrolase family AMK58_06650 PF07883 Cupin domain AMK58_06655 PF13454 FAD-NAD(P)-binding AMK58_06665 PF00072 Response regulator receiver domain AMK58_06665 PF00512 His Kinase A (phospho-acceptor) domain AMK58_06665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_06670 PF01745 Isopentenyl transferase AMK58_06680 PF03091 CutA1 divalent ion tolerance protein AMK58_06685 PF07690 Major Facilitator Superfamily AMK58_06690 PF05036 Sporulation related domain AMK58_06695 PF01053 Cys/Met metabolism PLP-dependent enzyme AMK58_06700 PF13380 CoA binding domain AMK58_06705 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_06710 PF03061 Thioesterase superfamily AMK58_06715 PF00572 Ribosomal protein L13 AMK58_06720 PF00380 Ribosomal protein S9/S16 AMK58_06725 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMK58_06725 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMK58_06730 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_06735 PF00691 OmpA family AMK58_06740 PF00561 alpha/beta hydrolase fold AMK58_06740 PF07167 AMK58_06740 AMK58_06750 PF12802 MarR family AMK58_06755 PF07690 Major Facilitator Superfamily AMK58_06765 PF00155 Aminotransferase class I and II AMK58_06770 PF00742 Homoserine dehydrogenase AMK58_06770 PF01842 ACT domain AMK58_06770 PF03447 Homoserine dehydrogenase, NAD binding domain AMK58_06775 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AMK58_06780 PF00465 Iron-containing alcohol dehydrogenase AMK58_06785 PF01368 DHH family AMK58_06785 PF02272 DHHA1 domain AMK58_06795 PF04851 Type III restriction enzyme, res subunit AMK58_06795 PF08463 AMK58_06795 AMK58_06795 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AMK58_06800 PF02384 N-6 DNA Methylase AMK58_06800 PF12161 HsdM N-terminal domain AMK58_06805 PF01420 Type I restriction modification DNA specificity domain AMK58_06835 PF12532 AMK58_06835 AMK58_06840 PF00589 Phage integrase family AMK58_06845 PF00248 Aldo/keto reductase family AMK58_06855 PF07690 Major Facilitator Superfamily AMK58_06860 PF00850 Histone deacetylase domain AMK58_06865 PF00583 Acetyltransferase (GNAT) family AMK58_06870 PF02558 Ketopantoate reductase PanE/ApbA AMK58_06870 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMK58_06875 PF00571 CBS domain AMK58_06880 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMK58_06880 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMK58_06885 PF12769 Domain of unknown function (DUF3814) AMK58_06890 PF02233 NAD(P) transhydrogenase beta subunit AMK58_06895 PF00571 CBS domain AMK58_06895 PF04972 BON domain AMK58_06900 PF00392 Bacterial regulatory proteins, gntR family AMK58_06900 PF07729 FCD domain AMK58_06905 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_06905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_06905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_06910 PF02515 CoA-transferase family III AMK58_06915 PF00549 CoA-ligase AMK58_06915 PF08442 ATP-grasp domain AMK58_06920 PF00549 CoA-ligase AMK58_06920 PF02629 CoA binding domain AMK58_06925 PF07690 Major Facilitator Superfamily AMK58_06930 PF07690 Major Facilitator Superfamily AMK58_06940 PF01964 ThiC family AMK58_06940 PF13667 ThiC-associated domain AMK58_06945 PF07690 Major Facilitator Superfamily AMK58_06950 PF05161 MOFRL family AMK58_06950 PF13660 Domain of unknown function (DUF4147) AMK58_06955 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_06955 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMK58_06960 PF01261 Xylose isomerase-like TIM barrel AMK58_06965 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_06965 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_06965 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_06970 PF02581 Thiamine monophosphate synthase/TENI AMK58_06975 PF00392 Bacterial regulatory proteins, gntR family AMK58_06975 PF07729 FCD domain AMK58_06980 PF00224 Pyruvate kinase, barrel domain AMK58_06980 PF02887 Pyruvate kinase, alpha/beta domain AMK58_06990 PF00391 PEP-utilising enzyme, mobile domain AMK58_06990 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMK58_06995 PF00571 CBS domain AMK58_07000 PF01925 AMK58_07000 AMK58_07005 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_07010 PF09723 AMK58_07010 AMK58_07015 PF00158 Sigma-54 interaction domain AMK58_07015 PF00989 PAS fold AMK58_07020 PF01266 FAD dependent oxidoreductase AMK58_07025 PF05239 PRC-barrel domain AMK58_07030 PF01965 DJ-1/PfpI family AMK58_07035 PF00196 Bacterial regulatory proteins, luxR family AMK58_07040 PF00072 Response regulator receiver domain AMK58_07040 PF00196 Bacterial regulatory proteins, luxR family AMK58_07045 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_07045 PF00941 FAD binding domain in molybdopterin dehydrogenase AMK58_07045 PF01799 [2Fe-2S] binding domain AMK58_07045 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMK58_07050 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_07050 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_07055 PF01774 UreD urease accessory protein AMK58_07060 PF00547 Urease, gamma subunit AMK58_07065 PF00699 Urease beta subunit AMK58_07070 PF00449 Urease alpha-subunit, N-terminal domain AMK58_07070 PF01979 Amidohydrolase family AMK58_07075 PF01177 Asp/Glu/Hydantoin racemase AMK58_07080 PF02814 UreE urease accessory protein, N-terminal domain AMK58_07080 PF05194 UreE urease accessory protein, C-terminal domain AMK58_07085 PF01730 UreF AMK58_07090 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMK58_07095 PF05239 PRC-barrel domain AMK58_07100 PF11127 Protein of unknown function (DUF2892) AMK58_07105 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_07110 PF01814 Hemerythrin HHE cation binding domain AMK58_07115 PF05013 N-formylglutamate amidohydrolase AMK58_07120 PF01022 Bacterial regulatory protein, arsR family AMK58_07125 PF11736 Protein of unknown function (DUF3299) AMK58_07135 PF13579 Glycosyl transferase 4-like domain AMK58_07145 PF00535 Glycosyl transferase family 2 AMK58_07150 PF01381 Helix-turn-helix AMK58_07155 PF00535 Glycosyl transferase family 2 AMK58_07160 PF02563 Polysaccharide biosynthesis/export protein AMK58_07160 PF06251 Capsule biosynthesis GfcC AMK58_07160 PF10531 SLBB domain AMK58_07170 PF00795 Carbon-nitrogen hydrolase AMK58_07175 PF01047 MarR family AMK58_07180 PF00805 Pentapeptide repeats (8 copies) AMK58_07185 PF01895 PhoU domain AMK58_07190 PF06150 ChaB AMK58_07200 PF13180 PDZ domain AMK58_07200 PF13365 Trypsin-like peptidase domain AMK58_07205 PF00535 Glycosyl transferase family 2 AMK58_07210 PF07578 Lipid A Biosynthesis N-terminal domain AMK58_07215 PF13231 AMK58_07215 AMK58_07225 PF00480 ROK family AMK58_07235 PF02653 AMK58_07235 AMK58_07240 PF02653 AMK58_07240 AMK58_07240 PF11862 AMK58_07240 AMK58_07245 PF00005 ABC transporter AMK58_07245 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_07250 PF00005 ABC transporter AMK58_07260 PF13458 Periplasmic binding protein AMK58_07275 PF00691 OmpA family AMK58_07275 PF13505 Outer membrane protein beta-barrel domain AMK58_07280 PF00072 Response regulator receiver domain AMK58_07280 PF00196 Bacterial regulatory proteins, luxR family AMK58_07285 PF00512 His Kinase A (phospho-acceptor) domain AMK58_07285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_07285 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AMK58_07290 PF12838 4Fe-4S dicluster domain AMK58_07295 PF14325 AMK58_07295 AMK58_07300 PF00849 RNA pseudouridylate synthase AMK58_07305 PF00106 short chain dehydrogenase AMK58_07310 PF00156 Phosphoribosyl transferase domain AMK58_07310 PF13522 Glutamine amidotransferase domain AMK58_07315 PF02674 AMK58_07315 AMK58_07320 PF13481 AAA domain AMK58_07320 PF13541 Subunit ChlI of Mg-chelatase AMK58_07325 PF00557 Metallopeptidase family M24 AMK58_07330 PF00293 NUDIX domain AMK58_07340 PF00005 ABC transporter AMK58_07345 PF02405 AMK58_07345 AMK58_07350 PF00842 Alanine racemase, C-terminal domain AMK58_07350 PF01168 Alanine racemase, N-terminal domain AMK58_07355 PF00772 DnaB-like helicase N terminal domain AMK58_07355 PF03796 DnaB-like helicase C terminal domain AMK58_07360 PF02353 Mycolic acid cyclopropane synthetase AMK58_07365 PF01281 Ribosomal protein L9, N-terminal domain AMK58_07365 PF03948 Ribosomal protein L9, C-terminal domain AMK58_07370 PF09991 AMK58_07370 AMK58_07375 PF01084 Ribosomal protein S18 AMK58_07380 PF01250 Ribosomal protein S6 AMK58_07385 PF00698 Acyl transferase domain AMK58_07390 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_07395 PF00550 Phosphopantetheine attachment site AMK58_07400 PF00109 Beta-ketoacyl synthase, N-terminal domain AMK58_07400 PF02801 Beta-ketoacyl synthase, C-terminal domain AMK58_07405 PF02618 YceG-like family AMK58_07415 PF01464 Transglycosylase SLT domain AMK58_07420 PF00701 Dihydrodipicolinate synthetase family AMK58_07425 PF01668 SmpB protein AMK58_07430 PF05175 Methyltransferase small domain AMK58_07430 PF08468 Methyltransferase small domain N-terminal AMK58_07435 PF12833 Helix-turn-helix domain AMK58_07440 PF01161 Phosphatidylethanolamine-binding protein AMK58_07445 PF00490 Delta-aminolevulinic acid dehydratase AMK58_07450 PF00149 Calcineurin-like phosphoesterase AMK58_07455 PF00781 Diacylglycerol kinase catalytic domain AMK58_07460 PF16113 AMK58_07460 AMK58_07465 PF13463 Winged helix DNA-binding domain AMK58_07470 PF00005 ABC transporter AMK58_07470 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_07475 PF00005 ABC transporter AMK58_07480 PF13458 Periplasmic binding protein AMK58_07485 PF02653 AMK58_07485 AMK58_07490 PF02653 AMK58_07490 AMK58_07495 PF14196 AMK58_07495 AMK58_07500 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMK58_07500 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMK58_07505 PF09361 AMK58_07505 AMK58_07510 PF00149 Calcineurin-like phosphoesterase AMK58_07510 PF02872 5'-nucleotidase, C-terminal domain AMK58_07515 PF00117 Glutamine amidotransferase class-I AMK58_07520 PF12804 MobA-like NTP transferase domain AMK58_07525 PF13478 XdhC Rossmann domain AMK58_07530 PF02625 XdhC and CoxI family AMK58_07535 PF05762 VWA domain containing CoxE-like protein AMK58_07540 PF07728 AAA domain (dynein-related subfamily) AMK58_07545 PF00941 FAD binding domain in molybdopterin dehydrogenase AMK58_07545 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMK58_07550 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_07550 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_07555 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_07555 PF01799 [2Fe-2S] binding domain AMK58_07560 PF16868 AMK58_07560 AMK58_07565 PF06808 AMK58_07565 AMK58_07570 PF08905 AMK58_07570 AMK58_07575 PF16980 AMK58_07575 AMK58_07580 PF00582 Universal stress protein family AMK58_07585 PF06707 Protein of unknown function (DUF1194) AMK58_07590 PF00850 Histone deacetylase domain AMK58_07605 PF02643 Uncharacterized ACR, COG1430 AMK58_07620 PF04800 ETC complex I subunit conserved region AMK58_07635 PF01502 Phosphoribosyl-AMP cyclohydrolase AMK58_07640 PF01053 Cys/Met metabolism PLP-dependent enzyme AMK58_07645 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_07650 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_07655 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_07660 PF00005 ABC transporter AMK58_07665 PF00155 Aminotransferase class I and II AMK58_07670 PF00892 EamA-like transporter family AMK58_07675 PF00583 Acetyltransferase (GNAT) family AMK58_07680 PF00583 Acetyltransferase (GNAT) family AMK58_07685 PF00581 Rhodanese-like domain AMK58_07690 PF01411 tRNA synthetases class II (A) AMK58_07690 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMK58_07695 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_07700 PF00293 NUDIX domain AMK58_07705 PF13180 PDZ domain AMK58_07705 PF13365 Trypsin-like peptidase domain AMK58_07730 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AMK58_07735 PF00581 Rhodanese-like domain AMK58_07740 PF02321 Outer membrane efflux protein AMK58_07745 PF10691 AMK58_07745 AMK58_07750 PF00133 tRNA synthetases class I (I, L, M and V) AMK58_07750 PF08264 Anticodon-binding domain of tRNA AMK58_07750 PF10458 Valyl tRNA synthetase tRNA binding arm AMK58_07755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_07755 PF00672 HAMP domain AMK58_07760 PF02698 DUF218 domain AMK58_07765 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AMK58_07765 PF05036 Sporulation related domain AMK58_07770 PF00768 D-alanyl-D-alanine carboxypeptidase AMK58_07770 PF07943 Penicillin-binding protein 5, C-terminal domain AMK58_07775 PF02223 Thymidylate kinase AMK58_07780 PF13177 DNA polymerase III, delta subunit AMK58_07785 PF09334 tRNA synthetases class I (M) AMK58_07790 PF01026 TatD related DNase AMK58_07795 PF12706 Beta-lactamase superfamily domain AMK58_07805 PF14326 AMK58_07805 AMK58_07810 PF13672 Protein phosphatase 2C AMK58_07820 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMK58_07825 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_07830 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_07835 PF00005 ABC transporter AMK58_07835 PF08402 TOBE domain AMK58_07840 PF13416 Bacterial extracellular solute-binding protein AMK58_07845 PF00120 Glutamine synthetase, catalytic domain AMK58_07850 PF01266 FAD dependent oxidoreductase AMK58_07860 PF01794 AMK58_07860 AMK58_07860 PF08022 AMK58_07860 AMK58_07865 PF12831 FAD dependent oxidoreductase AMK58_07870 PF04230 AMK58_07870 AMK58_07880 PF03741 AMK58_07880 AMK58_07885 PF00216 Bacterial DNA-binding protein AMK58_07890 PF05443 ROS/MUCR transcriptional regulator protein AMK58_07895 PF13420 Acetyltransferase (GNAT) domain AMK58_07900 PF04542 Sigma-70 region 2 AMK58_07900 PF04545 Sigma-70, region 4 AMK58_07905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_07905 PF11563 Protoglobin AMK58_07910 PF00583 Acetyltransferase (GNAT) family AMK58_07925 PF01810 AMK58_07925 AMK58_07930 PF02493 MORN repeat AMK58_07935 PF02391 MoaE protein AMK58_07940 PF02597 ThiS family AMK58_07945 PF00994 Probable molybdopterin binding domain AMK58_07945 PF03453 MoeA N-terminal region (domain I and II) AMK58_07945 PF03454 MoeA C-terminal region (domain IV) AMK58_07950 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AMK58_07955 PF01066 CDP-alcohol phosphatidyltransferase AMK58_07960 PF01541 GIY-YIG catalytic domain AMK58_07960 PF02151 UvrB/uvrC motif AMK58_07960 PF08459 UvrC Helix-hairpin-helix N-terminal AMK58_07960 PF12826 Helix-hairpin-helix motif AMK58_07965 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_07975 PF03692 AMK58_07975 AMK58_08005 PF00501 AMP-binding enzyme AMK58_08005 PF00550 Phosphopantetheine attachment site AMK58_08005 PF13193 AMP-binding enzyme C-terminal domain AMK58_08010 PF05681 AMK58_08010 AMK58_08010 PF05683 Fumarase C-terminus AMK58_08015 PF01926 50S ribosome-binding GTPase AMK58_08015 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMK58_08020 PF13360 PQQ-like domain AMK58_08025 PF09976 Tetratricopeptide repeat AMK58_08030 PF00578 AhpC/TSA family AMK58_08035 PF00072 Response regulator receiver domain AMK58_08035 PF00196 Bacterial regulatory proteins, luxR family AMK58_08040 PF00196 Bacterial regulatory proteins, luxR family AMK58_08045 PF00072 Response regulator receiver domain AMK58_08045 PF00196 Bacterial regulatory proteins, luxR family AMK58_08050 PF13401 AAA domain AMK58_08060 PF02705 AMK58_08060 AMK58_08065 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_08075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_08080 PF00989 PAS fold AMK58_08085 PF00989 PAS fold AMK58_08085 PF00990 GGDEF domain AMK58_08085 PF08448 PAS fold AMK58_08085 PF13188 PAS domain AMK58_08090 PF00155 Aminotransferase class I and II AMK58_08095 PF03186 AMK58_08095 AMK58_08100 PF03435 Saccharopine dehydrogenase AMK58_08100 PF16653 AMK58_08100 AMK58_08105 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMK58_08105 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMK58_08110 PF01814 Hemerythrin HHE cation binding domain AMK58_08115 PF03079 ARD/ARD' family AMK58_08120 PF07690 Major Facilitator Superfamily AMK58_08125 PF13468 Glyoxalase-like domain AMK58_08130 PF13279 Thioesterase-like superfamily AMK58_08135 PF13411 MerR HTH family regulatory protein AMK58_08140 PF00501 AMP-binding enzyme AMK58_08140 PF13193 AMP-binding enzyme C-terminal domain AMK58_08145 PF02036 SCP-2 sterol transfer family AMK58_08155 PF07369 Protein of unknown function (DUF1488) AMK58_08160 PF00005 ABC transporter AMK58_08165 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_08170 PF13379 NMT1-like family AMK58_08175 PF00009 Elongation factor Tu GTP binding domain AMK58_08175 PF01583 Adenylylsulphate kinase AMK58_08180 PF01507 Phosphoadenosine phosphosulfate reductase family AMK58_08185 PF01507 Phosphoadenosine phosphosulfate reductase family AMK58_08190 PF13241 Putative NAD(P)-binding AMK58_08190 PF14824 Sirohaem biosynthesis protein central AMK58_08195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_08200 PF11011 AMK58_08200 AMK58_08205 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMK58_08205 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMK58_08210 PF06073 AMK58_08210 AMK58_08220 PF00027 Cyclic nucleotide-binding domain AMK58_08220 PF00999 Sodium/hydrogen exchanger family AMK58_08235 PF13411 MerR HTH family regulatory protein AMK58_08240 PF00216 Bacterial DNA-binding protein AMK58_08245 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMK58_08245 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMK58_08250 PF02504 Fatty acid synthesis protein AMK58_08255 PF01783 Ribosomal L32p protein family AMK58_08260 PF02620 AMK58_08260 AMK58_08265 PF03981 AMK58_08265 AMK58_08270 PF04355 SmpA / OmlA family AMK58_08275 PF03030 Inorganic H+ pyrophosphatase AMK58_08285 PF00586 AIR synthase related protein, N-terminal domain AMK58_08285 PF02769 AIR synthase related protein, C-terminal domain AMK58_08290 PF01029 NusB family AMK58_08295 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMK58_08300 PF00925 GTP cyclohydrolase II AMK58_08300 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMK58_08305 PF00677 Lumazine binding domain AMK58_08310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMK58_08310 PF01872 RibD C-terminal domain AMK58_08315 PF03477 ATP cone domain AMK58_08320 PF00464 Serine hydroxymethyltransferase AMK58_08325 PF02502 Ribose/Galactose Isomerase AMK58_08330 PF05443 ROS/MUCR transcriptional regulator protein AMK58_08345 PF05974 Domain of unknown function (DUF892) AMK58_08360 PF04343 AMK58_08360 AMK58_08365 PF13673 Acetyltransferase (GNAT) domain AMK58_08375 PF01068 ATP dependent DNA ligase domain AMK58_08375 PF04675 DNA ligase N terminus AMK58_08375 PF04679 ATP dependent DNA ligase C terminal region AMK58_08380 PF12706 Beta-lactamase superfamily domain AMK58_08385 PF04227 Indigoidine synthase A like protein AMK58_08395 PF01048 Phosphorylase superfamily AMK58_08400 PF01694 Rhomboid family AMK58_08405 PF04357 AMK58_08405 AMK58_08410 PF01103 Surface antigen AMK58_08410 PF07244 Surface antigen variable number repeat AMK58_08415 PF00009 Elongation factor Tu GTP binding domain AMK58_08415 PF00679 Elongation factor G C-terminus AMK58_08415 PF03144 Elongation factor Tu domain 2 AMK58_08420 PF02566 OsmC-like protein AMK58_08430 PF01230 HIT domain AMK58_08435 PF13641 Glycosyltransferase like family 2 AMK58_08440 PF13545 Crp-like helix-turn-helix domain AMK58_08445 PF00072 Response regulator receiver domain AMK58_08450 PF00027 Cyclic nucleotide-binding domain AMK58_08450 PF13545 Crp-like helix-turn-helix domain AMK58_08460 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AMK58_08465 PF00195 Chalcone and stilbene synthases, N-terminal domain AMK58_08465 PF02797 Chalcone and stilbene synthases, C-terminal domain AMK58_08470 PF04367 AMK58_08470 AMK58_08485 PF00872 AMK58_08485 AMK58_08490 PF00270 DEAD/DEAH box helicase AMK58_08490 PF00271 Helicase conserved C-terminal domain AMK58_08490 PF17191 AMK58_08490 AMK58_08495 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_08495 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMK58_08500 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMK58_08505 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMK58_08510 PF10503 Esterase PHB depolymerase AMK58_08530 PF01323 DSBA-like thioredoxin domain AMK58_08535 PF00472 RF-1 domain AMK58_08540 PF05239 PRC-barrel domain AMK58_08545 PF01594 AMK58_08545 AMK58_08550 PF13840 ACT domain AMK58_08555 PF00270 DEAD/DEAH box helicase AMK58_08555 PF00271 Helicase conserved C-terminal domain AMK58_08555 PF02559 CarD-like/TRCF domain AMK58_08555 PF03461 TRCF domain AMK58_08560 PF03937 Flavinator of succinate dehydrogenase AMK58_08565 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_08575 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_08575 PF12867 DinB superfamily AMK58_08585 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMK58_08590 PF03748 AMK58_08590 AMK58_08595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMK58_08595 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_08600 PF05067 Manganese containing catalase AMK58_08605 PF07690 Major Facilitator Superfamily AMK58_08610 PF01474 Class-II DAHP synthetase family AMK58_08615 PF03748 AMK58_08615 AMK58_08620 PF00171 Aldehyde dehydrogenase family AMK58_08625 PF02569 Pantoate-beta-alanine ligase AMK58_08645 PF11306 Protein of unknown function (DUF3108) AMK58_08655 PF13419 Haloacid dehalogenase-like hydrolase AMK58_08660 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_08660 PF12804 MobA-like NTP transferase domain AMK58_08660 PF14602 Hexapeptide repeat of succinyl-transferase AMK58_08665 PF01380 SIS domain AMK58_08665 PF13522 Glutamine amidotransferase domain AMK58_08670 PF05951 AMK58_08670 AMK58_08675 PF00805 Pentapeptide repeats (8 copies) AMK58_08680 PF00301 Rubredoxin AMK58_08685 PF01037 AsnC family AMK58_08685 PF13404 AsnC-type helix-turn-helix domain AMK58_08690 PF01810 AMK58_08690 AMK58_08695 PF01734 Patatin-like phospholipase AMK58_08700 PF01728 FtsJ-like methyltransferase AMK58_08705 PF00326 Prolyl oligopeptidase family AMK58_08710 PF04324 BFD-like [2Fe-2S] binding domain AMK58_08720 PF00512 His Kinase A (phospho-acceptor) domain AMK58_08720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_08725 PF00072 Response regulator receiver domain AMK58_08725 PF00196 Bacterial regulatory proteins, luxR family AMK58_08730 PF00512 His Kinase A (phospho-acceptor) domain AMK58_08730 PF00989 PAS fold AMK58_08730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_08735 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_08740 PF04290 AMK58_08740 AMK58_08745 PF06808 AMK58_08745 AMK58_08750 PF03831 PhnA protein AMK58_08750 PF08274 PhnA Zinc-Ribbon AMK58_08755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_08755 PF00672 HAMP domain AMK58_08760 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_08765 PF00384 Molybdopterin oxidoreductase AMK58_08765 PF01568 Molydopterin dinucleotide binding domain AMK58_08765 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_08770 PF03060 Nitronate monooxygenase AMK58_08775 PF00990 GGDEF domain AMK58_08780 PF00805 Pentapeptide repeats (8 copies) AMK58_08785 PF13279 Thioesterase-like superfamily AMK58_08790 PF00809 Pterin binding enzyme AMK58_08790 PF02310 B12 binding domain AMK58_08790 PF02574 Homocysteine S-methyltransferase AMK58_08790 PF02607 B12 binding domain AMK58_08790 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMK58_08795 PF01724 Domain of unknown function DUF29 AMK58_08800 PF02219 Methylenetetrahydrofolate reductase AMK58_08805 PF01022 Bacterial regulatory protein, arsR family AMK58_08805 PF08241 Methyltransferase domain AMK58_08810 PF04333 AMK58_08810 AMK58_08815 PF05494 Toluene tolerance, Ttg2 AMK58_08820 PF00805 Pentapeptide repeats (8 copies) AMK58_08825 PF00005 ABC transporter AMK58_08825 PF12848 ABC transporter AMK58_08830 PF02639 AMK58_08830 AMK58_08835 PF00929 Exonuclease AMK58_08835 PF13188 PAS domain AMK58_08855 PF00210 Ferritin-like domain AMK58_08860 PF02446 4-alpha-glucanotransferase AMK58_08865 PF00072 Response regulator receiver domain AMK58_08870 PF00128 Alpha amylase, catalytic domain AMK58_08870 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMK58_08875 PF00128 Alpha amylase, catalytic domain AMK58_08875 PF02806 Alpha amylase, C-terminal all-beta domain AMK58_08875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMK58_08880 PF00128 Alpha amylase, catalytic domain AMK58_08880 PF16657 AMK58_08880 AMK58_08885 PF01814 Hemerythrin HHE cation binding domain AMK58_08890 PF00583 Acetyltransferase (GNAT) family AMK58_08895 PF00459 Inositol monophosphatase family AMK58_08900 PF04305 AMK58_08900 AMK58_08910 PF01636 Phosphotransferase enzyme family AMK58_08915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_08915 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_08915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_08920 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_08925 PF00501 AMP-binding enzyme AMK58_08925 PF13193 AMP-binding enzyme C-terminal domain AMK58_08930 PF00027 Cyclic nucleotide-binding domain AMK58_08930 PF13545 Crp-like helix-turn-helix domain AMK58_08935 PF00656 Caspase domain AMK58_08935 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_08940 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_08940 PF05226 AMK58_08940 AMK58_08945 PF14326 AMK58_08945 AMK58_08950 PF06620 AMK58_08950 AMK58_08960 PF00691 OmpA family AMK58_08965 PF01471 Putative peptidoglycan binding domain AMK58_08965 PF14326 AMK58_08965 AMK58_08975 PF14347 AMK58_08975 AMK58_08980 PF00027 Cyclic nucleotide-binding domain AMK58_08980 PF00924 Mechanosensitive ion channel AMK58_08985 PF10098 AMK58_08985 AMK58_08990 PF12802 MarR family AMK58_08995 PF12697 Alpha/beta hydrolase family AMK58_09010 PF13649 Methyltransferase domain AMK58_09020 PF00270 DEAD/DEAH box helicase AMK58_09020 PF00271 Helicase conserved C-terminal domain AMK58_09020 PF08494 AMK58_09020 AMK58_09025 PF00149 Calcineurin-like phosphoesterase AMK58_09030 PF02469 Fasciclin domain AMK58_09035 PF00875 DNA photolyase AMK58_09035 PF03441 FAD binding domain of DNA photolyase AMK58_09040 PF05787 Bacterial protein of unknown function (DUF839) AMK58_09045 PF01475 Ferric uptake regulator family AMK58_09050 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMK58_09050 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMK58_09060 PF00535 Glycosyl transferase family 2 AMK58_09065 PF03600 Citrate transporter AMK58_09070 PF12706 Beta-lactamase superfamily domain AMK58_09080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_09085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_09090 PF01545 Cation efflux family AMK58_09090 PF16916 AMK58_09090 AMK58_09095 PF01243 Pyridoxamine 5'-phosphate oxidase AMK58_09095 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMK58_09100 PF16998 AMK58_09100 AMK58_09105 PF00226 DnaJ domain AMK58_09105 PF01556 DnaJ C terminal domain AMK58_09110 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_09110 PF01434 Peptidase family M41 AMK58_09115 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_09120 PF00672 HAMP domain AMK58_09120 PF07228 Stage II sporulation protein E (SpoIIE) AMK58_09125 PF00072 Response regulator receiver domain AMK58_09125 PF00486 Transcriptional regulatory protein, C terminal AMK58_09130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_09135 PF09345 AMK58_09135 AMK58_09145 PF00072 Response regulator receiver domain AMK58_09145 PF00512 His Kinase A (phospho-acceptor) domain AMK58_09145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_09145 PF11849 AMK58_09145 AMK58_09170 PF00893 Small Multidrug Resistance protein AMK58_09175 PF00106 short chain dehydrogenase AMK58_09180 PF02566 OsmC-like protein AMK58_09185 PF11164 AMK58_09185 AMK58_09190 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMK58_09195 PF00583 Acetyltransferase (GNAT) family AMK58_09200 PF00892 EamA-like transporter family AMK58_09205 PF00733 Asparagine synthase AMK58_09205 PF13537 Glutamine amidotransferase domain AMK58_09215 PF01370 NAD dependent epimerase/dehydratase family AMK58_09220 PF13477 Glycosyl transferase 4-like AMK58_09220 PF13692 Glycosyl transferases group 1 AMK58_09225 PF00953 Glycosyl transferase family 4 AMK58_09230 PF01370 NAD dependent epimerase/dehydratase family AMK58_09235 PF02719 Polysaccharide biosynthesis protein AMK58_09235 PF13727 CoA-binding domain AMK58_09245 PF00691 OmpA family AMK58_09250 PF04052 TolB amino-terminal domain AMK58_09250 PF07676 WD40-like Beta Propeller Repeat AMK58_09260 PF02472 Biopolymer transport protein ExbD/TolR AMK58_09265 PF01618 AMK58_09265 AMK58_09270 PF03061 Thioesterase superfamily AMK58_09275 PF05491 Holliday junction DNA helicase ruvB C-terminus AMK58_09275 PF05496 Holliday junction DNA helicase ruvB N-terminus AMK58_09280 PF01330 RuvA N terminal domain AMK58_09280 PF07499 RuvA, C-terminal domain AMK58_09280 PF14520 Helix-hairpin-helix domain AMK58_09285 PF02075 Crossover junction endodeoxyribonuclease RuvC AMK58_09285 PF04480 Protein of unknown function (DUF559) AMK58_09290 PF01709 Transcriptional regulator AMK58_09295 PF13277 YmdB-like protein AMK58_09300 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMK58_09305 PF05164 Cell division protein ZapA AMK58_09315 PF00456 Transketolase, thiamine diphosphate binding domain AMK58_09315 PF02779 Transketolase, pyrimidine binding domain AMK58_09315 PF02780 Transketolase, C-terminal domain AMK58_09320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMK58_09320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMK58_09325 PF05534 AMK58_09325 AMK58_09340 PF01791 DeoC/LacD family aldolase AMK58_09345 PF02581 Thiamine monophosphate synthase/TENI AMK58_09350 PF01925 AMK58_09350 AMK58_09355 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMK58_09360 PF00107 Zinc-binding dehydrogenase AMK58_09360 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_09365 PF00152 tRNA synthetases class II (D, K and N) AMK58_09370 PF01132 Elongation factor P (EF-P) OB domain AMK58_09370 PF08207 Elongation factor P (EF-P) KOW-like domain AMK58_09370 PF09285 Elongation factor P, C-terminal AMK58_09375 PF00459 Inositol monophosphatase family AMK58_09380 PF00691 OmpA family AMK58_09390 PF00691 OmpA family AMK58_09395 PF02347 Glycine cleavage system P-protein AMK58_09400 PF02347 Glycine cleavage system P-protein AMK58_09405 PF01597 Glycine cleavage H-protein AMK58_09410 PF01571 Aminomethyltransferase folate-binding domain AMK58_09410 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMK58_09415 PF09360 Iron-binding zinc finger CDGSH type AMK58_09425 PF02401 LytB protein AMK58_09430 PF01636 Phosphotransferase enzyme family AMK58_09435 PF00075 RNase H AMK58_09440 PF00501 AMP-binding enzyme AMK58_09440 PF13193 AMP-binding enzyme C-terminal domain AMK58_09445 PF08534 Redoxin AMK58_09450 PF11412 Disulphide bond corrector protein DsbC AMK58_09450 PF13899 Thioredoxin-like AMK58_09455 PF02622 Uncharacterized ACR, COG1678 AMK58_09465 PF13302 Acetyltransferase (GNAT) domain AMK58_09470 PF00675 Insulinase (Peptidase family M16) AMK58_09470 PF05193 Peptidase M16 inactive domain AMK58_09475 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_09475 PF14821 Threonine synthase N terminus AMK58_09480 PF00150 Cellulase (glycosyl hydrolase family 5) AMK58_09485 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AMK58_09490 PF02104 AMK58_09490 AMK58_09495 PF06170 AMK58_09495 AMK58_09500 PF00510 Cytochrome c oxidase subunit III AMK58_09505 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMK58_09510 PF01040 UbiA prenyltransferase family AMK58_09515 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_09520 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMK58_09520 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMK58_09525 PF11902 AMK58_09525 AMK58_09530 PF01523 Putative modulator of DNA gyrase AMK58_09535 PF13740 ACT domain AMK58_09540 PF06082 AMK58_09540 AMK58_09550 PF07043 AMK58_09550 AMK58_09555 PF04542 Sigma-70 region 2 AMK58_09555 PF08281 Sigma-70, region 4 AMK58_09560 PF01464 Transglycosylase SLT domain AMK58_09560 PF08238 Sel1 repeat AMK58_09580 PF01212 Beta-eliminating lyase AMK58_09590 PF00849 RNA pseudouridylate synthase AMK58_09590 PF01479 S4 domain AMK58_09595 PF00140 Sigma-70 factor, region 1 AMK58_09595 PF04542 Sigma-70 region 2 AMK58_09595 PF04545 Sigma-70, region 4 AMK58_09610 PF00709 Adenylosuccinate synthetase AMK58_09615 PF13393 Histidyl-tRNA synthetase AMK58_09625 PF02386 Cation transport protein AMK58_09635 PF13088 BNR repeat-like domain AMK58_09640 PF04055 Radical SAM superfamily AMK58_09640 PF13186 Iron-sulfur cluster-binding domain AMK58_09645 PF03631 AMK58_09645 AMK58_09650 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_09660 PF01264 Chorismate synthase AMK58_09670 PF00072 Response regulator receiver domain AMK58_09675 PF02627 Carboxymuconolactone decarboxylase family AMK58_09680 PF01343 Peptidase family S49 AMK58_09690 PF01339 CheB methylesterase AMK58_09690 PF01739 CheR methyltransferase, SAM binding domain AMK58_09690 PF03705 CheR methyltransferase, all-alpha domain AMK58_09690 PF13596 PAS domain AMK58_09695 PF00072 Response regulator receiver domain AMK58_09695 PF00989 PAS fold AMK58_09695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_09705 PF03649 AMK58_09705 AMK58_09710 PF00005 ABC transporter AMK58_09715 PF07690 Major Facilitator Superfamily AMK58_09720 PF01594 AMK58_09720 AMK58_09725 PF00512 His Kinase A (phospho-acceptor) domain AMK58_09725 PF00672 HAMP domain AMK58_09725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_09730 PF00072 Response regulator receiver domain AMK58_09730 PF00486 Transcriptional regulatory protein, C terminal AMK58_09735 PF13180 PDZ domain AMK58_09735 PF13365 Trypsin-like peptidase domain AMK58_09740 PF13432 Tetratricopeptide repeat AMK58_09745 PF00009 Elongation factor Tu GTP binding domain AMK58_09745 PF00679 Elongation factor G C-terminus AMK58_09745 PF03144 Elongation factor Tu domain 2 AMK58_09745 PF03764 Elongation factor G, domain IV AMK58_09745 PF14492 Elongation Factor G, domain II AMK58_09750 PF01042 Endoribonuclease L-PSP AMK58_09755 PF13365 Trypsin-like peptidase domain AMK58_09760 PF01131 DNA topoisomerase AMK58_09760 PF01751 Toprim domain AMK58_09780 PF13641 Glycosyltransferase like family 2 AMK58_09790 PF00730 HhH-GPD superfamily base excision DNA repair protein AMK58_09800 PF00176 SNF2 family N-terminal domain AMK58_09800 PF00271 Helicase conserved C-terminal domain AMK58_09805 PF01569 PAP2 superfamily AMK58_09820 PF00583 Acetyltransferase (GNAT) family AMK58_09830 PF00140 Sigma-70 factor, region 1 AMK58_09830 PF03979 Sigma-70 factor, region 1 AMK58_09830 PF04539 Sigma-70 region 3 AMK58_09830 PF04542 Sigma-70 region 2 AMK58_09830 PF04545 Sigma-70, region 4 AMK58_09830 PF04546 Sigma-70, non-essential region AMK58_09835 PF01807 CHC2 zinc finger AMK58_09835 PF08275 DNA primase catalytic core, N-terminal domain AMK58_09835 PF13662 Toprim domain AMK58_09840 PF09424 Yqey-like protein AMK58_09845 PF00117 Glutamine amidotransferase class-I AMK58_09845 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMK58_09850 PF00072 Response regulator receiver domain AMK58_09850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_09850 PF08448 PAS fold AMK58_09865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMK58_09865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_09870 PF03960 ArsC family AMK58_09875 PF05175 Methyltransferase small domain AMK58_09880 PF00583 Acetyltransferase (GNAT) family AMK58_09890 PF01066 CDP-alcohol phosphatidyltransferase AMK58_09890 PF08009 AMK58_09890 AMK58_09895 PF02666 AMK58_09895 AMK58_09905 PF01476 LysM domain AMK58_09915 PF03641 Possible lysine decarboxylase AMK58_09920 PF00180 Isocitrate/isopropylmalate dehydrogenase AMK58_09925 PF03447 Homoserine dehydrogenase, NAD binding domain AMK58_09930 PF06055 AMK58_09930 AMK58_09935 PF07750 AMK58_09935 AMK58_09940 PF13490 Putative zinc-finger AMK58_09945 PF04542 Sigma-70 region 2 AMK58_09945 PF08281 Sigma-70, region 4 AMK58_09950 PF00180 Isocitrate/isopropylmalate dehydrogenase AMK58_09955 PF06146 AMK58_09955 AMK58_09960 PF03992 Antibiotic biosynthesis monooxygenase AMK58_09970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_09970 PF00672 HAMP domain AMK58_09970 PF12729 AMK58_09970 AMK58_09975 PF05762 VWA domain containing CoxE-like protein AMK58_09980 PF13328 HD domain AMK58_09985 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMK58_09985 PF12801 AMK58_09985 AMK58_09985 PF13746 4Fe-4S dicluster domain AMK58_10000 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_10005 PF07728 AAA domain (dynein-related subfamily) AMK58_10015 PF01411 tRNA synthetases class II (A) AMK58_10015 PF02272 DHHA1 domain AMK58_10015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMK58_10020 PF00154 recA bacterial DNA recombination protein AMK58_10025 PF12692 S-adenosyl-L-methionine methyltransferase AMK58_10030 PF00072 Response regulator receiver domain AMK58_10030 PF00512 His Kinase A (phospho-acceptor) domain AMK58_10030 PF00989 PAS fold AMK58_10030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_10030 PF08448 PAS fold AMK58_10035 PF01312 FlhB HrpN YscU SpaS Family AMK58_10040 PF01311 AMK58_10040 AMK58_10045 PF01313 AMK58_10045 AMK58_10050 PF02049 AMK58_10050 AMK58_10055 PF00460 Flagella basal body rod protein AMK58_10055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_10060 PF00460 Flagella basal body rod protein AMK58_10065 PF01312 FlhB HrpN YscU SpaS Family AMK58_10075 PF04347 AMK58_10075 AMK58_10080 PF00813 AMK58_10080 AMK58_10085 PF02705 AMK58_10085 AMK58_10095 PF13677 AMK58_10095 AMK58_10105 PF04344 Chemotaxis phosphatase, CheZ AMK58_10110 PF10685 AMK58_10110 AMK58_10125 PF01052 Surface presentation of antigens (SPOA) AMK58_10125 PF02154 Flagellar motor switch protein FliM AMK58_10130 PF03748 AMK58_10130 AMK58_10135 PF00460 Flagella basal body rod protein AMK58_10135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_10140 PF00460 Flagella basal body rod protein AMK58_10140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_10145 PF13144 SAF-like AMK58_10150 PF02107 AMK58_10150 AMK58_10155 PF04488 Glycosyltransferase sugar-binding region containing DXD motif AMK58_10155 PF13176 Tetratricopeptide repeat AMK58_10155 PF13432 Tetratricopeptide repeat AMK58_10160 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMK58_10165 PF10768 AMK58_10165 AMK58_10170 PF02119 AMK58_10170 AMK58_10175 PF10135 AMK58_10175 AMK58_10185 PF02120 Flagellar hook-length control protein FliK AMK58_10190 PF03963 AMK58_10190 AMK58_10190 PF13860 FlgD Ig-like domain AMK58_10195 PF06627 Protein of unknown function (DUF1153) AMK58_10200 PF01575 MaoC like domain AMK58_10215 PF10119 AMK58_10215 AMK58_10215 PF13649 Methyltransferase domain AMK58_10220 PF10002 AMK58_10220 AMK58_10225 PF00005 ABC transporter AMK58_10225 PF00664 ABC transporter transmembrane region AMK58_10230 PF01197 Ribosomal protein L31 AMK58_10235 PF07323 Protein of unknown function (DUF1465) AMK58_10240 PF00011 Hsp20/alpha crystallin family AMK58_10245 PF00512 His Kinase A (phospho-acceptor) domain AMK58_10245 PF00989 PAS fold AMK58_10245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_10245 PF08448 PAS fold AMK58_10250 PF00561 alpha/beta hydrolase fold AMK58_10255 PF01053 Cys/Met metabolism PLP-dependent enzyme AMK58_10260 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMK58_10265 PF05013 N-formylglutamate amidohydrolase AMK58_10270 PF00892 EamA-like transporter family AMK58_10275 PF00392 Bacterial regulatory proteins, gntR family AMK58_10275 PF07729 FCD domain AMK58_10280 PF00406 Adenylate kinase AMK58_10280 PF05191 Adenylate kinase, active site lid AMK58_10285 PF00344 SecY translocase AMK58_10290 PF00828 Ribosomal protein L18e/L15 AMK58_10295 PF00327 Ribosomal protein L30p/L7e AMK58_10300 PF00333 Ribosomal protein S5, N-terminal domain AMK58_10300 PF03719 Ribosomal protein S5, C-terminal domain AMK58_10305 PF00861 Ribosomal L18p/L5e family AMK58_10310 PF00347 Ribosomal protein L6 AMK58_10315 PF00410 Ribosomal protein S8 AMK58_10320 PF00253 Ribosomal protein S14p/S29e AMK58_10325 PF00281 Ribosomal protein L5 AMK58_10325 PF00673 ribosomal L5P family C-terminus AMK58_10330 PF00467 KOW motif AMK58_10330 PF17136 AMK58_10330 AMK58_10335 PF00238 Ribosomal protein L14p/L23e AMK58_10340 PF00366 Ribosomal protein S17 AMK58_10345 PF00831 Ribosomal L29 protein AMK58_10350 PF00252 Ribosomal protein L16p/L10e AMK58_10355 PF00189 Ribosomal protein S3, C-terminal domain AMK58_10355 PF07650 KH domain AMK58_10360 PF00237 Ribosomal protein L22p/L17e AMK58_10365 PF00203 Ribosomal protein S19 AMK58_10370 PF00181 Ribosomal Proteins L2, RNA binding domain AMK58_10370 PF03947 Ribosomal Proteins L2, C-terminal domain AMK58_10375 PF00276 Ribosomal protein L23 AMK58_10380 PF00573 Ribosomal protein L4/L1 family AMK58_10385 PF00297 Ribosomal protein L3 AMK58_10390 PF00338 Ribosomal protein S10p/S20e AMK58_10395 PF00009 Elongation factor Tu GTP binding domain AMK58_10395 PF03143 Elongation factor Tu C-terminal domain AMK58_10395 PF03144 Elongation factor Tu domain 2 AMK58_10400 PF00009 Elongation factor Tu GTP binding domain AMK58_10400 PF00679 Elongation factor G C-terminus AMK58_10400 PF03144 Elongation factor Tu domain 2 AMK58_10400 PF03764 Elongation factor G, domain IV AMK58_10400 PF14492 Elongation Factor G, domain II AMK58_10405 PF00177 Ribosomal protein S7p/S5e AMK58_10410 PF00164 Ribosomal protein S12/S23 AMK58_10415 PF01965 DJ-1/PfpI family AMK58_10420 PF00623 RNA polymerase Rpb1, domain 2 AMK58_10420 PF04983 RNA polymerase Rpb1, domain 3 AMK58_10420 PF04997 RNA polymerase Rpb1, domain 1 AMK58_10420 PF04998 RNA polymerase Rpb1, domain 5 AMK58_10420 PF05000 RNA polymerase Rpb1, domain 4 AMK58_10425 PF00562 RNA polymerase Rpb2, domain 6 AMK58_10425 PF04560 RNA polymerase Rpb2, domain 7 AMK58_10425 PF04561 RNA polymerase Rpb2, domain 2 AMK58_10425 PF04563 RNA polymerase beta subunit AMK58_10425 PF04565 RNA polymerase Rpb2, domain 3 AMK58_10425 PF10385 RNA polymerase beta subunit external 1 domain AMK58_10430 PF00542 Ribosomal protein L7/L12 C-terminal domain AMK58_10430 PF16320 AMK58_10430 AMK58_10435 PF00466 Ribosomal protein L10 AMK58_10440 PF00687 Ribosomal protein L1p/L10e family AMK58_10445 PF00298 Ribosomal protein L11, RNA binding domain AMK58_10445 PF03946 Ribosomal protein L11, N-terminal domain AMK58_10450 PF00467 KOW motif AMK58_10450 PF02357 Transcription termination factor nusG AMK58_10455 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMK58_10465 PF00009 Elongation factor Tu GTP binding domain AMK58_10465 PF03143 Elongation factor Tu C-terminal domain AMK58_10465 PF03144 Elongation factor Tu domain 2 AMK58_10480 PF00588 SpoU rRNA Methylase family AMK58_10480 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMK58_10500 PF02563 Polysaccharide biosynthesis/export protein AMK58_10500 PF10531 SLBB domain AMK58_10505 PF10082 AMK58_10505 AMK58_10510 PF01047 MarR family AMK58_10515 PF13458 Periplasmic binding protein AMK58_10520 PF02653 AMK58_10520 AMK58_10525 PF00005 ABC transporter AMK58_10525 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_10530 PF00005 ABC transporter AMK58_10540 PF02358 Trehalose-phosphatase AMK58_10545 PF01979 Amidohydrolase family AMK58_10555 PF00480 ROK family AMK58_10560 PF12796 Ankyrin repeats (3 copies) AMK58_10565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_10565 PF12729 AMK58_10565 AMK58_10570 PF01546 Peptidase family M20/M25/M40 AMK58_10570 PF07687 Peptidase dimerisation domain AMK58_10575 PF00005 ABC transporter AMK58_10580 PF00005 ABC transporter AMK58_10580 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_10585 PF02653 AMK58_10585 AMK58_10590 PF02653 AMK58_10590 AMK58_10595 PF13433 Periplasmic binding protein domain AMK58_10600 PF01261 Xylose isomerase-like TIM barrel AMK58_10605 PF06187 Protein of unknown function (DUF993) AMK58_10610 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMK58_10620 PF00005 ABC transporter AMK58_10625 PF09084 NMT1/THI5 like AMK58_10630 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_10635 PF00440 Bacterial regulatory proteins, tetR family AMK58_10635 PF14514 Transcriptional regulator, TetR, C-terminal AMK58_10640 PF00656 Caspase domain AMK58_10640 PF02493 MORN repeat AMK58_10640 PF08239 Bacterial SH3 domain AMK58_10645 PF00656 Caspase domain AMK58_10645 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_10645 PF08239 Bacterial SH3 domain AMK58_10650 PF11324 AMK58_10650 AMK58_10660 PF07883 Cupin domain AMK58_10665 PF00107 Zinc-binding dehydrogenase AMK58_10665 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_10665 PF00501 AMP-binding enzyme AMK58_10665 PF13193 AMP-binding enzyme C-terminal domain AMK58_10665 PF16177 AMK58_10665 AMK58_10670 PF00005 ABC transporter AMK58_10675 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_10680 PF09084 NMT1/THI5 like AMK58_10685 PF01471 Putative peptidoglycan binding domain AMK58_10690 PF00472 RF-1 domain AMK58_10690 PF03462 PCRF domain AMK58_10695 PF03062 AMK58_10695 AMK58_10705 PF00905 Penicillin binding protein transpeptidase domain AMK58_10705 PF00912 Transglycosylase AMK58_10705 PF17092 AMK58_10705 AMK58_10710 PF01520 N-acetylmuramoyl-L-alanine amidase AMK58_10710 PF11741 AMIN domain AMK58_10715 PF00575 S1 RNA binding domain AMK58_10715 PF10150 Ribonuclease E/G family AMK58_10720 PF01272 Transcription elongation factor, GreA/GreB, C-term AMK58_10720 PF03449 Transcription elongation factor, N-terminal AMK58_10725 PF13419 Haloacid dehalogenase-like hydrolase AMK58_10730 PF01323 DSBA-like thioredoxin domain AMK58_10735 PF01435 Peptidase family M48 AMK58_10740 PF01019 Gamma-glutamyltranspeptidase AMK58_10745 PF00155 Aminotransferase class I and II AMK58_10750 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMK58_10755 PF04452 RNA methyltransferase AMK58_10760 PF01040 UbiA prenyltransferase family AMK58_10765 PF05257 CHAP domain AMK58_10770 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AMK58_10775 PF13646 HEAT repeats AMK58_10780 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AMK58_10785 PF12275 AMK58_10785 AMK58_10790 PF07681 AMK58_10790 AMK58_10795 PF01523 Putative modulator of DNA gyrase AMK58_10805 PF00781 Diacylglycerol kinase catalytic domain AMK58_10810 PF12850 Calcineurin-like phosphoesterase superfamily domain AMK58_10815 PF13439 Glycosyltransferase Family 4 AMK58_10815 PF13692 Glycosyl transferases group 1 AMK58_10820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_10820 PF11563 Protoglobin AMK58_10825 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMK58_10830 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMK58_10835 PF03279 AMK58_10835 AMK58_10840 PF01810 AMK58_10840 AMK58_10845 PF05071 AMK58_10845 AMK58_10850 PF02470 AMK58_10850 AMK58_10860 PF07411 Domain of unknown function (DUF1508) AMK58_10865 PF02515 CoA-transferase family III AMK58_10870 PF00805 Pentapeptide repeats (8 copies) AMK58_10875 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMK58_10880 PF04339 AMK58_10880 AMK58_10885 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease AMK58_10890 PF00669 Bacterial flagellin N-terminal helical region AMK58_10895 PF00450 Serine carboxypeptidase AMK58_10900 PF01814 Hemerythrin HHE cation binding domain AMK58_10905 PF01709 Transcriptional regulator AMK58_10905 PF02867 Ribonucleotide reductase, barrel domain AMK58_10905 PF08471 AMK58_10905 AMK58_10910 PF05239 PRC-barrel domain AMK58_10915 PF01814 Hemerythrin HHE cation binding domain AMK58_10925 PF12146 Putative lysophospholipase AMK58_10930 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AMK58_10935 PF00106 short chain dehydrogenase AMK58_10940 PF01575 MaoC like domain AMK58_10945 PF01687 Riboflavin kinase AMK58_10945 PF06574 FAD synthetase AMK58_10950 PF00156 Phosphoribosyl transferase domain AMK58_10955 PF00133 tRNA synthetases class I (I, L, M and V) AMK58_10955 PF06827 Zinc finger found in FPG and IleRS AMK58_10955 PF08264 Anticodon-binding domain of tRNA AMK58_10960 PF01252 AMK58_10960 AMK58_10965 PF11233 AMK58_10965 AMK58_10970 PF00675 Insulinase (Peptidase family M16) AMK58_10970 PF05193 Peptidase M16 inactive domain AMK58_10975 PF05193 Peptidase M16 inactive domain AMK58_10985 PF00342 Phosphoglucose isomerase AMK58_11005 PF01119 DNA mismatch repair protein, C-terminal domain AMK58_11005 PF08676 MutL C terminal dimerisation domain AMK58_11005 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_11020 PF13937 AMK58_11020 AMK58_11025 PF00474 Sodium:solute symporter family AMK58_11030 PF00027 Cyclic nucleotide-binding domain AMK58_11030 PF00571 CBS domain AMK58_11030 PF03445 AMK58_11030 AMK58_11030 PF10335 AMK58_11030 AMK58_11040 PF07969 Amidohydrolase family AMK58_11050 PF00392 Bacterial regulatory proteins, gntR family AMK58_11050 PF07729 FCD domain AMK58_11055 PF00005 ABC transporter AMK58_11060 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_11065 PF09084 NMT1/THI5 like AMK58_11070 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_11075 PF00884 Sulfatase AMK58_11080 PF03328 HpcH/HpaI aldolase/citrate lyase family AMK58_11085 PF01979 Amidohydrolase family AMK58_11090 PF12697 Alpha/beta hydrolase family AMK58_11095 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMK58_11100 PF00392 Bacterial regulatory proteins, gntR family AMK58_11100 PF07729 FCD domain AMK58_11105 PF00248 Aldo/keto reductase family AMK58_11120 PF00535 Glycosyl transferase family 2 AMK58_11120 PF03279 AMK58_11120 AMK58_11125 PF01593 Flavin containing amine oxidoreductase AMK58_11130 PF00109 Beta-ketoacyl synthase, N-terminal domain AMK58_11130 PF02801 Beta-ketoacyl synthase, C-terminal domain AMK58_11135 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_11145 PF00109 Beta-ketoacyl synthase, N-terminal domain AMK58_11145 PF02801 Beta-ketoacyl synthase, C-terminal domain AMK58_11150 PF11659 AMK58_11150 AMK58_11165 PF13279 Thioesterase-like superfamily AMK58_11170 PF00501 AMP-binding enzyme AMK58_11180 PF00550 Phosphopantetheine attachment site AMK58_11185 PF00550 Phosphopantetheine attachment site AMK58_11190 PF01553 Acyltransferase AMK58_11195 PF13723 AMK58_11195 AMK58_11205 PF12146 Putative lysophospholipase AMK58_11215 PF00440 Bacterial regulatory proteins, tetR family AMK58_11220 PF09827 CRISPR associated protein Cas2 AMK58_11225 PF01867 CRISPR associated protein Cas1 AMK58_11230 PF01930 Domain of unknown function DUF83 AMK58_11235 PF05107 AMK58_11235 AMK58_11240 PF09709 AMK58_11240 AMK58_11245 PF09704 CRISPR-associated protein (Cas_Cas5) AMK58_11250 PF00270 DEAD/DEAH box helicase AMK58_11255 PF00144 Beta-lactamase AMK58_11260 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_11265 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMK58_11270 PF00128 Alpha amylase, catalytic domain AMK58_11270 PF16657 AMK58_11270 AMK58_11275 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_11280 PF03602 Conserved hypothetical protein 95 AMK58_11285 PF00849 RNA pseudouridylate synthase AMK58_11285 PF01479 S4 domain AMK58_11290 PF07311 Dodecin AMK58_11295 PF14437 AMK58_11295 AMK58_11300 PF01909 Nucleotidyltransferase domain AMK58_11305 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMK58_11305 PF02843 Phosphoribosylglycinamide synthetase, C domain AMK58_11305 PF02844 Phosphoribosylglycinamide synthetase, N domain AMK58_11310 PF02601 AMK58_11310 AMK58_11310 PF13742 AMK58_11310 AMK58_11315 PF00520 Ion transport protein AMK58_11320 PF01979 Amidohydrolase family AMK58_11325 PF03129 Anticodon binding domain AMK58_11325 PF13393 Histidyl-tRNA synthetase AMK58_11330 PF13432 Tetratricopeptide repeat AMK58_11335 PF00912 Transglycosylase AMK58_11345 PF00210 Ferritin-like domain AMK58_11365 PF00994 Probable molybdopterin binding domain AMK58_11370 PF03749 Sugar fermentation stimulation protein AMK58_11375 PF00557 Metallopeptidase family M24 AMK58_11380 PF04002 RadC-like JAB domain AMK58_11385 PF05099 Tellurite resistance protein TerB AMK58_11390 PF00563 EAL domain AMK58_11390 PF00990 GGDEF domain AMK58_11390 PF08269 Cache domain AMK58_11390 PF13188 PAS domain AMK58_11390 PF13426 PAS domain AMK58_11395 PF00206 Lyase AMK58_11395 PF10397 Adenylosuccinate lyase C-terminus AMK58_11400 PF07345 Domain of unknown function (DUF1476) AMK58_11405 PF05742 AMK58_11405 AMK58_11410 PF01259 SAICAR synthetase AMK58_11415 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AMK58_11420 PF00730 HhH-GPD superfamily base excision DNA repair protein AMK58_11425 PF03473 MOSC domain AMK58_11425 PF03475 3-alpha domain AMK58_11430 PF07690 Major Facilitator Superfamily AMK58_11435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_11435 PF03466 LysR substrate binding domain AMK58_11440 PF13507 CobB/CobQ-like glutamine amidotransferase domain AMK58_11445 PF00586 AIR synthase related protein, N-terminal domain AMK58_11445 PF02769 AIR synthase related protein, C-terminal domain AMK58_11450 PF01722 BolA-like protein AMK58_11455 PF00462 Glutaredoxin AMK58_11465 PF00892 EamA-like transporter family AMK58_11470 PF00440 Bacterial regulatory proteins, tetR family AMK58_11475 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMK58_11480 PF00163 Ribosomal protein S4/S9 N-terminal domain AMK58_11480 PF01479 S4 domain AMK58_11495 PF04397 LytTr DNA-binding domain AMK58_11495 PF08448 PAS fold AMK58_11500 PF00588 SpoU rRNA Methylase family AMK58_11505 PF00682 HMGL-like AMK58_11505 PF08502 LeuA allosteric (dimerisation) domain AMK58_11510 PF00072 Response regulator receiver domain AMK58_11515 PF00512 His Kinase A (phospho-acceptor) domain AMK58_11515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_11515 PF03924 CHASE domain AMK58_11525 PF01757 AMK58_11525 AMK58_11530 PF01406 tRNA synthetases class I (C) catalytic domain AMK58_11530 PF09190 DALR domain AMK58_11535 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMK58_11540 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_11540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_11540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_11550 PF00795 Carbon-nitrogen hydrolase AMK58_11550 PF02540 NAD synthase AMK58_11555 PF00355 Rieske [2Fe-2S] domain AMK58_11555 PF01266 FAD dependent oxidoreductase AMK58_11565 PF13474 SnoaL-like domain AMK58_11570 PF00144 Beta-lactamase AMK58_11575 PF13231 AMK58_11575 AMK58_11580 PF00535 Glycosyl transferase family 2 AMK58_11585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_11585 PF00672 HAMP domain AMK58_11585 PF12729 AMK58_11585 AMK58_11590 PF04315 AMK58_11590 AMK58_11595 PF13458 Periplasmic binding protein AMK58_11600 PF02653 AMK58_11600 AMK58_11605 PF06508 Queuosine biosynthesis protein QueC AMK58_11620 PF02653 AMK58_11620 AMK58_11625 PF00005 ABC transporter AMK58_11625 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_11630 PF00005 ABC transporter AMK58_11635 PF07859 alpha/beta hydrolase fold AMK58_11645 PF00829 Ribosomal prokaryotic L21 protein AMK58_11650 PF01016 Ribosomal L27 protein AMK58_11655 PF01018 GTP1/OBG AMK58_11655 PF01926 50S ribosome-binding GTPase AMK58_11660 PF00696 Amino acid kinase family AMK58_11660 PF01472 PUA domain AMK58_11665 PF13419 Haloacid dehalogenase-like hydrolase AMK58_11680 PF01925 AMK58_11680 AMK58_11685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_11690 PF00171 Aldehyde dehydrogenase family AMK58_11695 PF01467 Cytidylyltransferase AMK58_11700 PF02410 Oligomerisation domain AMK58_11705 PF02590 Predicted SPOUT methyltransferase AMK58_11710 PF01676 Metalloenzyme superfamily AMK58_11710 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AMK58_11715 PF01551 Peptidase family M23 AMK58_11720 PF03572 Peptidase family S41 AMK58_11720 PF13180 PDZ domain AMK58_11725 PF04748 Divergent polysaccharide deacetylase AMK58_11730 PF00293 NUDIX domain AMK58_11740 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMK58_11745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMK58_11745 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMK58_11750 PF00231 ATP synthase AMK58_11755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMK58_11755 PF00306 ATP synthase alpha/beta chain, C terminal domain AMK58_11755 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMK58_11760 PF00213 ATP synthase delta (OSCP) subunit AMK58_11770 PF17200 AMK58_11770 AMK58_11775 PF00270 DEAD/DEAH box helicase AMK58_11775 PF00271 Helicase conserved C-terminal domain AMK58_11780 PF00923 Transaldolase AMK58_11785 PF04340 Protein of unknown function, DUF484 AMK58_11790 PF00589 Phage integrase family AMK58_11790 PF02899 Phage integrase, N-terminal SAM-like domain AMK58_11795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMK58_11795 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_11805 PF00561 alpha/beta hydrolase fold AMK58_11810 PF08085 AMK58_11810 AMK58_11815 PF00294 pfkB family carbohydrate kinase AMK58_11815 PF01467 Cytidylyltransferase AMK58_11825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_11835 PF13649 Methyltransferase domain AMK58_11845 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_11850 PF01928 CYTH domain AMK58_11850 PF05235 CHAD domain AMK58_11855 PF13649 Methyltransferase domain AMK58_11860 PF00162 Phosphoglycerate kinase AMK58_11865 PF02132 RecR protein AMK58_11865 PF13662 Toprim domain AMK58_11870 PF02575 YbaB/EbfC DNA-binding family AMK58_11875 PF12169 DNA polymerase III subunits gamma and tau domain III AMK58_11875 PF12362 AMK58_11875 AMK58_11875 PF13177 DNA polymerase III, delta subunit AMK58_11880 PF00034 Cytochrome c AMK58_11885 PF02348 Cytidylyltransferase AMK58_11890 PF00800 Prephenate dehydratase AMK58_11895 PF00293 NUDIX domain AMK58_11895 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMK58_11895 PF09297 NADH pyrophosphatase zinc ribbon domain AMK58_11900 PF00459 Inositol monophosphatase family AMK58_11910 PF00230 Major intrinsic protein AMK58_11915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_11925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_11930 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_11935 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_11940 PF00005 ABC transporter AMK58_11940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_11945 PF06170 AMK58_11945 AMK58_11950 PF00849 RNA pseudouridylate synthase AMK58_11955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_11960 PF01047 MarR family AMK58_11965 PF10387 Protein of unknown function (DUF2442) AMK58_11970 PF13711 AMK58_11970 AMK58_11975 PF01706 FliG C-terminal domain AMK58_11975 PF14841 FliG middle domain AMK58_11975 PF14842 FliG N-terminal domain AMK58_11980 PF00883 Cytosol aminopeptidase family, catalytic domain AMK58_11985 PF13417 Glutathione S-transferase, N-terminal domain AMK58_11990 PF16868 AMK58_11990 AMK58_11995 PF04955 AMK58_11995 AMK58_12005 PF00817 impB/mucB/samB family AMK58_12010 PF02811 PHP domain AMK58_12010 PF07733 Bacterial DNA polymerase III alpha subunit AMK58_12010 PF14579 Helix-hairpin-helix motif AMK58_12020 PF03942 AMK58_12020 AMK58_12030 PF04280 Tim44-like domain AMK58_12035 PF13430 AMK58_12035 AMK58_12040 PF04055 Radical SAM superfamily AMK58_12045 PF00043 Glutathione S-transferase, C-terminal domain AMK58_12045 PF02798 Glutathione S-transferase, N-terminal domain AMK58_12050 PF14343 AMK58_12050 AMK58_12055 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_12055 PF12911 AMK58_12055 AMK58_12060 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_12065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_12070 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_12075 PF07690 Major Facilitator Superfamily AMK58_12085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_12085 PF03466 LysR substrate binding domain AMK58_12095 PF00582 Universal stress protein family AMK58_12100 PF00563 EAL domain AMK58_12100 PF00990 GGDEF domain AMK58_12100 PF08448 PAS fold AMK58_12105 PF02798 Glutathione S-transferase, N-terminal domain AMK58_12105 PF14497 Glutathione S-transferase, C-terminal domain AMK58_12110 PF00202 Aminotransferase class-III AMK58_12120 PF00155 Aminotransferase class I and II AMK58_12125 PF14557 Putative AphA-like transcriptional regulator AMK58_12130 PF01627 Hpt domain AMK58_12135 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_12140 PF04187 Protein of unknown function, DUF399 AMK58_12140 PF13180 PDZ domain AMK58_12145 PF00293 NUDIX domain AMK58_12145 PF14803 Nudix N-terminal AMK58_12150 PF02646 AMK58_12150 AMK58_12155 PF00313 'Cold-shock' DNA-binding domain AMK58_12165 PF01327 Polypeptide deformylase AMK58_12170 PF00551 Formyl transferase AMK58_12170 PF02911 Formyl transferase, C-terminal domain AMK58_12175 PF01416 tRNA pseudouridine synthase AMK58_12180 PF02653 AMK58_12180 AMK58_12185 PF01878 EVE domain AMK58_12190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMK58_12195 PF08279 HTH domain AMK58_12195 PF13280 AMK58_12195 AMK58_12200 PF00330 Aconitase family (aconitate hydratase) AMK58_12210 PF00892 EamA-like transporter family AMK58_12215 PF01245 Ribosomal protein L19 AMK58_12220 PF01746 tRNA (Guanine-1)-methyltransferase AMK58_12225 PF01782 RimM N-terminal domain AMK58_12225 PF05239 PRC-barrel domain AMK58_12230 PF00886 Ribosomal protein S16 AMK58_12235 PF00448 SRP54-type protein, GTPase domain AMK58_12235 PF02881 SRP54-type protein, helical bundle domain AMK58_12235 PF02978 Signal peptide binding domain AMK58_12240 PF00805 Pentapeptide repeats (8 copies) AMK58_12255 PF10098 AMK58_12255 AMK58_12260 PF00990 GGDEF domain AMK58_12265 PF13419 Haloacid dehalogenase-like hydrolase AMK58_12270 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_12270 PF14602 Hexapeptide repeat of succinyl-transferase AMK58_12270 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMK58_12275 PF01546 Peptidase family M20/M25/M40 AMK58_12275 PF07687 Peptidase dimerisation domain AMK58_12285 PF02277 Phosphoribosyltransferase AMK58_12290 PF02654 AMK58_12290 AMK58_12295 PF00300 Histidine phosphatase superfamily (branch 1) AMK58_12300 PF16242 AMK58_12300 AMK58_12305 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_12305 PF14602 Hexapeptide repeat of succinyl-transferase AMK58_12310 PF01061 AMK58_12310 AMK58_12315 PF00005 ABC transporter AMK58_12320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_12325 PF00072 Response regulator receiver domain AMK58_12325 PF02954 Bacterial regulatory protein, Fis family AMK58_12330 PF11127 Protein of unknown function (DUF2892) AMK58_12335 PF00027 Cyclic nucleotide-binding domain AMK58_12335 PF13545 Crp-like helix-turn-helix domain AMK58_12340 PF02706 Chain length determinant protein AMK58_12340 PF13614 AAA domain AMK58_12340 PF13807 AMK58_12340 AMK58_12345 PF01943 AMK58_12345 AMK58_12345 PF14667 Polysaccharide biosynthesis C-terminal domain AMK58_12350 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMK58_12350 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMK58_12350 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMK58_12355 PF01370 NAD dependent epimerase/dehydratase family AMK58_12360 PF01370 NAD dependent epimerase/dehydratase family AMK58_12365 PF13579 Glycosyl transferase 4-like domain AMK58_12365 PF13692 Glycosyl transferases group 1 AMK58_12370 PF00534 Glycosyl transferases group 1 AMK58_12375 PF13692 Glycosyl transferases group 1 AMK58_12380 PF03232 AMK58_12380 AMK58_12385 PF13229 Right handed beta helix region AMK58_12395 PF16822 AMK58_12395 AMK58_12400 PF00535 Glycosyl transferase family 2 AMK58_12405 PF00535 Glycosyl transferase family 2 AMK58_12415 PF00468 Ribosomal protein L34 AMK58_12420 PF00825 Ribonuclease P AMK58_12425 PF02096 60Kd inner membrane protein AMK58_12425 PF14849 YidC periplasmic domain AMK58_12430 PF01926 50S ribosome-binding GTPase AMK58_12435 PF00999 Sodium/hydrogen exchanger family AMK58_12445 PF00696 Amino acid kinase family AMK58_12455 PF01544 CorA-like Mg2+ transporter protein AMK58_12465 PF01124 MAPEG family AMK58_12470 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMK58_12475 PF00892 EamA-like transporter family AMK58_12480 PF01274 Malate synthase AMK58_12485 PF00589 Phage integrase family AMK58_12485 PF02899 Phage integrase, N-terminal SAM-like domain AMK58_12495 PF01202 Shikimate kinase AMK58_12500 PF01761 3-dehydroquinate synthase AMK58_12505 PF00571 CBS domain AMK58_12510 PF11136 AMK58_12510 AMK58_12515 PF13467 Ribbon-helix-helix domain AMK58_12520 PF01722 BolA-like protein AMK58_12525 PF00226 DnaJ domain AMK58_12530 PF07728 AAA domain (dynein-related subfamily) AMK58_12530 PF12556 AMK58_12530 AMK58_12535 PF13366 AMK58_12535 AMK58_12540 PF06213 AMK58_12540 AMK58_12540 PF11775 AMK58_12540 AMK58_12545 PF06776 Invasion associated locus B (IalB) protein AMK58_12550 PF13343 Bacterial extracellular solute-binding protein AMK58_12555 PF02678 Pirin AMK58_12555 PF05726 Pirin C-terminal cupin domain AMK58_12560 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_12565 PF14681 Uracil phosphoribosyltransferase AMK58_12570 PF00990 GGDEF domain AMK58_12575 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMK58_12580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMK58_12590 PF01266 FAD dependent oxidoreductase AMK58_12595 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMK58_12600 PF06305 AMK58_12600 AMK58_12605 PF00216 Bacterial DNA-binding protein AMK58_12610 PF09955 AMK58_12610 AMK58_12615 PF00575 S1 RNA binding domain AMK58_12620 PF02224 Cytidylate kinase AMK58_12625 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMK58_12630 PF01019 Gamma-glutamyltranspeptidase AMK58_12635 PF09538 AMK58_12635 AMK58_12650 PF02678 Pirin AMK58_12650 PF05726 Pirin C-terminal cupin domain AMK58_12655 PF00994 Probable molybdopterin binding domain AMK58_12655 PF03453 MoeA N-terminal region (domain I and II) AMK58_12655 PF03454 MoeA C-terminal region (domain IV) AMK58_12655 PF12727 PBP superfamily domain AMK58_12660 PF00994 Probable molybdopterin binding domain AMK58_12660 PF03453 MoeA N-terminal region (domain I and II) AMK58_12665 PF00072 Response regulator receiver domain AMK58_12665 PF00990 GGDEF domain AMK58_12670 PF00072 Response regulator receiver domain AMK58_12670 PF00512 His Kinase A (phospho-acceptor) domain AMK58_12670 PF00989 PAS fold AMK58_12670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_12675 PF00072 Response regulator receiver domain AMK58_12675 PF00512 His Kinase A (phospho-acceptor) domain AMK58_12675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_12675 PF07694 5TMR of 5TMR-LYT AMK58_12675 PF08447 PAS fold AMK58_12680 PF00535 Glycosyl transferase family 2 AMK58_12685 PF04138 AMK58_12685 AMK58_12690 PF00011 Hsp20/alpha crystallin family AMK58_12695 PF06620 AMK58_12695 AMK58_12705 PF09912 AMK58_12705 AMK58_12710 PF04397 LytTr DNA-binding domain AMK58_12715 PF01757 AMK58_12715 AMK58_12720 PF00330 Aconitase family (aconitate hydratase) AMK58_12720 PF00694 Aconitase C-terminal domain AMK58_12725 PF13458 Periplasmic binding protein AMK58_12730 PF13489 Methyltransferase domain AMK58_12735 PF00293 NUDIX domain AMK58_12740 PF00929 Exonuclease AMK58_12745 PF01008 Initiation factor 2 subunit family AMK58_12750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_12750 PF02743 Cache domain AMK58_12750 PF07568 AMK58_12750 AMK58_12760 PF00027 Cyclic nucleotide-binding domain AMK58_12760 PF00571 CBS domain AMK58_12760 PF03445 AMK58_12760 AMK58_12760 PF10335 AMK58_12760 AMK58_12765 PF00474 Sodium:solute symporter family AMK58_12770 PF04341 AMK58_12770 AMK58_12775 PF06676 AMK58_12775 AMK58_12780 PF07021 Methionine biosynthesis protein MetW AMK58_12785 PF02659 AMK58_12785 AMK58_12790 PF00795 Carbon-nitrogen hydrolase AMK58_12795 PF00462 Glutaredoxin AMK58_12800 PF00156 Phosphoribosyl transferase domain AMK58_12805 PF01313 AMK58_12805 AMK58_12810 PF08241 Methyltransferase domain AMK58_12815 PF13386 AMK58_12815 AMK58_12825 PF12796 Ankyrin repeats (3 copies) AMK58_12825 PF13606 Ankyrin repeat AMK58_12830 PF03186 AMK58_12830 AMK58_12835 PF00270 DEAD/DEAH box helicase AMK58_12835 PF00271 Helicase conserved C-terminal domain AMK58_12840 PF01741 Large-conductance mechanosensitive channel, MscL AMK58_12845 PF01043 SecA preprotein cross-linking domain AMK58_12845 PF02810 SEC-C motif AMK58_12845 PF07516 SecA Wing and Scaffold domain AMK58_12845 PF07517 SecA DEAD-like domain AMK58_12850 PF13616 PPIC-type PPIASE domain AMK58_12855 PF01960 ArgJ family AMK58_12860 PF13302 Acetyltransferase (GNAT) domain AMK58_12865 PF14815 NUDIX domain AMK58_12870 PF00270 DEAD/DEAH box helicase AMK58_12870 PF00271 Helicase conserved C-terminal domain AMK58_12870 PF00570 HRDC domain AMK58_12870 PF09382 RQC domain AMK58_12870 PF16124 AMK58_12870 AMK58_12880 PF13692 Glycosyl transferases group 1 AMK58_12890 PF00892 EamA-like transporter family AMK58_12895 PF06808 AMK58_12895 AMK58_12900 PF04290 AMK58_12900 AMK58_12905 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_12910 PF00691 OmpA family AMK58_12915 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) AMK58_12920 PF06761 AMK58_12920 AMK58_12920 PF14331 AMK58_12920 AMK58_12925 PF00691 OmpA family AMK58_12925 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) AMK58_12930 PF01740 STAS domain AMK58_12935 PF00296 Luciferase-like monooxygenase AMK58_12940 PF01641 SelR domain AMK58_12945 PF01738 Dienelactone hydrolase family AMK58_12950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMK58_12950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMK58_12950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMK58_12950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMK58_12955 PF00313 'Cold-shock' DNA-binding domain AMK58_12970 PF14907 Uncharacterised nucleotidyltransferase AMK58_12975 PF00149 Calcineurin-like phosphoesterase AMK58_12980 PF00892 EamA-like transporter family AMK58_12985 PF12802 MarR family AMK58_12990 PF00005 ABC transporter AMK58_13000 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_13000 PF12911 AMK58_13000 AMK58_13005 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_13010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_13020 PF13432 Tetratricopeptide repeat AMK58_13030 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AMK58_13035 PF01935 Domain of unknown function DUF87 AMK58_13040 PF00563 EAL domain AMK58_13040 PF00990 GGDEF domain AMK58_13070 PF01569 PAP2 superfamily AMK58_13075 PF04214 AMK58_13075 AMK58_13080 PF00072 Response regulator receiver domain AMK58_13080 PF00990 GGDEF domain AMK58_13080 PF11849 AMK58_13080 AMK58_13095 PF04024 AMK58_13095 AMK58_13100 PF06667 AMK58_13100 AMK58_13105 PF04012 AMK58_13105 AMK58_13110 PF00158 Sigma-54 interaction domain AMK58_13110 PF02954 Bacterial regulatory protein, Fis family AMK58_13115 PF09650 AMK58_13115 AMK58_13120 PF00905 Penicillin binding protein transpeptidase domain AMK58_13120 PF00912 Transglycosylase AMK58_13125 PF03486 HI0933-like protein AMK58_13135 PF03264 NapC/NirT cytochrome c family, N-terminal region AMK58_13140 PF00034 Cytochrome c AMK58_13140 PF03150 Di-haem cytochrome c peroxidase AMK58_13145 PF00199 Catalase AMK58_13145 PF06628 Catalase-related immune-responsive AMK58_13150 PF00118 TCP-1/cpn60 chaperonin family AMK58_13155 PF00166 Chaperonin 10 Kd subunit AMK58_13160 PF06233 AMK58_13160 AMK58_13165 PF00959 Phage lysozyme AMK58_13175 PF02628 AMK58_13175 AMK58_13180 PF06850 AMK58_13180 AMK58_13185 PF03372 Endonuclease/Exonuclease/phosphatase family AMK58_13190 PF00614 Phospholipase D Active site motif AMK58_13190 PF09335 AMK58_13190 AMK58_13190 PF13091 PLD-like domain AMK58_13195 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_13205 PF00005 ABC transporter AMK58_13205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_13210 PF00924 Mechanosensitive ion channel AMK58_13215 PF00072 Response regulator receiver domain AMK58_13215 PF01966 HD domain AMK58_13215 PF11849 AMK58_13215 AMK58_13220 PF00156 Phosphoribosyl transferase domain AMK58_13225 PF00332 Glycosyl hydrolases family 17 AMK58_13230 PF00175 Oxidoreductase NAD-binding domain AMK58_13230 PF00970 Oxidoreductase FAD-binding domain AMK58_13235 PF06114 Domain of unknown function (DUF955) AMK58_13235 PF09856 AMK58_13235 AMK58_13235 PF12844 Helix-turn-helix domain AMK58_13240 PF00463 Isocitrate lyase family AMK58_13245 PF01965 DJ-1/PfpI family AMK58_13250 PF00512 His Kinase A (phospho-acceptor) domain AMK58_13250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_13250 PF08448 PAS fold AMK58_13250 PF12860 AMK58_13250 AMK58_13255 PF00174 Oxidoreductase molybdopterin binding domain AMK58_13260 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMK58_13260 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMK58_13265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_13270 PF02915 Rubrerythrin AMK58_13275 PF06945 AMK58_13275 AMK58_13280 PF09537 Domain of unknown function (DUF2383) AMK58_13285 PF05974 Domain of unknown function (DUF892) AMK58_13290 PF10688 AMK58_13290 AMK58_13300 PF00156 Phosphoribosyl transferase domain AMK58_13305 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_13310 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_13315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_13320 PF02633 Creatinine amidohydrolase AMK58_13330 PF13560 Helix-turn-helix domain AMK58_13345 PF01527 Transposase AMK58_13365 PF00589 Phage integrase family AMK58_13380 PF03050 AMK58_13380 AMK58_13380 PF13005 AMK58_13380 AMK58_13380 PF13007 AMK58_13380 AMK58_13380 PF13817 AMK58_13380 AMK58_13385 PF05717 AMK58_13385 AMK58_13390 PF00872 AMK58_13390 AMK58_13395 PF01710 Transposase AMK58_13410 PF01527 Transposase AMK58_13415 PF00665 Integrase core domain AMK58_13415 PF13551 Winged helix-turn helix AMK58_13420 PF01695 IstB-like ATP binding protein AMK58_13430 PF00665 Integrase core domain AMK58_13430 PF13384 Homeodomain-like domain AMK58_13435 PF01695 IstB-like ATP binding protein AMK58_13440 PF01695 IstB-like ATP binding protein AMK58_13465 PF01471 Putative peptidoglycan binding domain AMK58_13465 PF13539 D-alanyl-D-alanine carboxypeptidase AMK58_13480 PF00656 Caspase domain AMK58_13485 PF03050 AMK58_13485 AMK58_13490 PF03050 AMK58_13490 AMK58_13505 PF04055 Radical SAM superfamily AMK58_13505 PF13394 4Fe-4S single cluster domain AMK58_13525 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_13525 PF06594 AMK58_13525 AMK58_13545 PF00082 Subtilase family AMK58_13550 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_13555 PF00775 Dioxygenase AMK58_13560 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB AMK58_13570 PF03923 AMK58_13570 AMK58_13575 PF13036 Protein of unknown function (DUF3897) AMK58_13595 PF00892 EamA-like transporter family AMK58_13600 PF00196 Bacterial regulatory proteins, luxR family AMK58_13615 PF06527 AMK58_13615 AMK58_13620 PF05621 AMK58_13620 AMK58_13625 PF00665 Integrase core domain AMK58_13625 PF09299 Mu transposase, C-terminal AMK58_13630 PF08722 TnsA endonuclease N terminal AMK58_13645 PF13335 AMK58_13645 AMK58_13650 PF03729 AMK58_13650 AMK58_13655 PF03548 Outer membrane lipoprotein carrier protein LolA AMK58_13660 PF01580 FtsK/SpoIIIE family AMK58_13660 PF09397 Ftsk gamma domain AMK58_13660 PF13491 AMK58_13660 AMK58_13665 PF00155 Aminotransferase class I and II AMK58_13670 PF00543 Nitrogen regulatory protein P-II AMK58_13675 PF01494 FAD binding domain AMK58_13680 PF02834 LigT like Phosphoesterase AMK58_13685 PF00248 Aldo/keto reductase family AMK58_13690 PF08495 AMK58_13690 AMK58_13690 PF10442 AMK58_13690 AMK58_13695 PF13472 GDSL-like Lipase/Acylhydrolase family AMK58_13700 PF00005 ABC transporter AMK58_13705 PF02687 AMK58_13705 AMK58_13710 PF00990 GGDEF domain AMK58_13715 PF00226 DnaJ domain AMK58_13715 PF00684 DnaJ central domain AMK58_13715 PF01556 DnaJ C terminal domain AMK58_13720 PF00012 Hsp70 protein AMK58_13735 PF08902 AMK58_13735 AMK58_13740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_13740 PF08447 PAS fold AMK58_13740 PF13188 PAS domain AMK58_13745 PF00072 Response regulator receiver domain AMK58_13750 PF01025 GrpE AMK58_13755 PF01628 HrcA protein C terminal domain AMK58_13760 PF01138 3' exoribonuclease family, domain 1 AMK58_13760 PF03725 3' exoribonuclease family, domain 2 AMK58_13765 PF01725 Ham1 family AMK58_13770 PF04055 Radical SAM superfamily AMK58_13770 PF06969 HemN C-terminal domain AMK58_13775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_13775 PF00672 HAMP domain AMK58_13775 PF17200 AMK58_13775 AMK58_13780 PF00186 Dihydrofolate reductase AMK58_13790 PF01381 Helix-turn-helix AMK58_13795 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMK58_13795 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMK58_13800 PF13369 AMK58_13800 AMK58_13800 PF13371 Tetratricopeptide repeat AMK58_13805 PF02021 Uncharacterised protein family UPF0102 AMK58_13810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_13815 PF13458 Periplasmic binding protein AMK58_13820 PF09361 AMK58_13820 AMK58_13825 PF01053 Cys/Met metabolism PLP-dependent enzyme AMK58_13830 PF13466 STAS domain AMK58_13855 PF01909 Nucleotidyltransferase domain AMK58_13870 PF01584 CheW-like domain AMK58_13875 PF02261 Aspartate decarboxylase AMK58_13890 PF03372 Endonuclease/Exonuclease/phosphatase family AMK58_13895 PF08241 Methyltransferase domain AMK58_13900 PF03975 CheD chemotactic sensory transduction AMK58_13905 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AMK58_13910 PF00498 FHA domain AMK58_13915 PF01648 4'-phosphopantetheinyl transferase superfamily AMK58_13920 PF01259 SAICAR synthetase AMK58_13925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMK58_13925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_13930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMK58_13935 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMK58_13935 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMK58_13935 PF04039 AMK58_13935 AMK58_13935 PF13244 AMK58_13935 AMK58_13940 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMK58_13945 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMK58_13950 PF01899 AMK58_13950 AMK58_13955 PF04066 AMK58_13955 AMK58_13960 PF03334 AMK58_13960 AMK58_13965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMK58_13970 PF13609 Gram-negative porin AMK58_13980 PF00856 SET domain AMK58_13985 PF07993 Male sterility protein AMK58_13990 PF00005 ABC transporter AMK58_13995 PF01145 SPFH domain / Band 7 family AMK58_14000 PF00005 ABC transporter AMK58_14005 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_14010 PF05128 AMK58_14010 AMK58_14015 PF14331 AMK58_14015 AMK58_14035 PF00924 Mechanosensitive ion channel AMK58_14035 PF13458 Periplasmic binding protein AMK58_14040 PF13437 HlyD family secretion protein AMK58_14040 PF13533 Biotin-lipoyl like AMK58_14045 PF00005 ABC transporter AMK58_14045 PF00664 ABC transporter transmembrane region AMK58_14050 PF02321 Outer membrane efflux protein AMK58_14060 PF00005 ABC transporter AMK58_14065 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_14070 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_14075 PF01547 Bacterial extracellular solute-binding protein AMK58_14080 PF00171 Aldehyde dehydrogenase family AMK58_14090 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_14095 PF01547 Bacterial extracellular solute-binding protein AMK58_14100 PF02515 CoA-transferase family III AMK58_14105 PF00106 short chain dehydrogenase AMK58_14110 PF00356 Bacterial regulatory proteins, lacI family AMK58_14110 PF13377 Periplasmic binding protein-like domain AMK58_14115 PF00593 TonB dependent receptor AMK58_14115 PF07715 TonB-dependent Receptor Plug Domain AMK58_14125 PF12365 AMK58_14125 AMK58_14130 PF03929 AMK58_14130 AMK58_14135 PF11804 AMK58_14135 AMK58_14140 PF02554 AMK58_14140 AMK58_14140 PF13722 AMK58_14140 AMK58_14145 PF04328 AMK58_14145 AMK58_14155 PF00107 Zinc-binding dehydrogenase AMK58_14155 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_14155 PF13823 Alcohol dehydrogenase GroES-associated AMK58_14160 PF00392 Bacterial regulatory proteins, gntR family AMK58_14160 PF07729 FCD domain AMK58_14165 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_14170 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_14175 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_14180 PF00005 ABC transporter AMK58_14185 PF13472 GDSL-like Lipase/Acylhydrolase family AMK58_14190 PF10129 AMK58_14190 AMK58_14205 PF00795 Carbon-nitrogen hydrolase AMK58_14205 PF02540 NAD synthase AMK58_14210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_14215 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMK58_14220 PF07859 alpha/beta hydrolase fold AMK58_14225 PF00005 ABC transporter AMK58_14230 PF09084 NMT1/THI5 like AMK58_14235 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_14240 PF00392 Bacterial regulatory proteins, gntR family AMK58_14240 PF07729 FCD domain AMK58_14245 PF06983 3-demethylubiquinone-9 3-methyltransferase AMK58_14250 PF07690 Major Facilitator Superfamily AMK58_14255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_14255 PF03466 LysR substrate binding domain AMK58_14260 PF12833 Helix-turn-helix domain AMK58_14265 PF00593 TonB dependent receptor AMK58_14265 PF07715 TonB-dependent Receptor Plug Domain AMK58_14270 PF00005 ABC transporter AMK58_14275 PF01497 Periplasmic binding protein AMK58_14280 PF01032 FecCD transport family AMK58_14285 PF00005 ABC transporter AMK58_14285 PF00664 ABC transporter transmembrane region AMK58_14300 PF13414 TPR repeat AMK58_14300 PF13432 Tetratricopeptide repeat AMK58_14300 PF13844 Glycosyl transferase family 41 AMK58_14305 PF00204 DNA gyrase B AMK58_14305 PF00986 DNA gyrase B subunit, carboxyl terminus AMK58_14305 PF01751 Toprim domain AMK58_14305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_14310 PF02463 RecF/RecN/SMC N terminal domain AMK58_14315 PF00712 DNA polymerase III beta subunit, N-terminal domain AMK58_14315 PF02767 DNA polymerase III beta subunit, central domain AMK58_14315 PF02768 DNA polymerase III beta subunit, C-terminal domain AMK58_14330 PF04023 FeoA domain AMK58_14335 PF02421 Ferrous iron transport protein B AMK58_14335 PF07664 AMK58_14335 AMK58_14335 PF07670 Nucleoside recognition AMK58_14345 PF00672 HAMP domain AMK58_14345 PF00990 GGDEF domain AMK58_14345 PF02743 Cache domain AMK58_14350 PF00561 alpha/beta hydrolase fold AMK58_14355 PF00072 Response regulator receiver domain AMK58_14355 PF00196 Bacterial regulatory proteins, luxR family AMK58_14360 PF00512 His Kinase A (phospho-acceptor) domain AMK58_14360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_14360 PF17158 AMK58_14360 AMK58_14365 PF00857 Isochorismatase family AMK58_14370 PF07235 AMK58_14370 AMK58_14375 PF07969 Amidohydrolase family AMK58_14380 PF07681 AMK58_14380 AMK58_14385 PF05977 Transmembrane secretion effector AMK58_14390 PF13372 Alginate export AMK58_14420 PF12706 Beta-lactamase superfamily domain AMK58_14425 PF13417 Glutathione S-transferase, N-terminal domain AMK58_14430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_14430 PF03466 LysR substrate binding domain AMK58_14435 PF13378 Enolase C-terminal domain-like AMK58_14445 PF00072 Response regulator receiver domain AMK58_14445 PF00512 His Kinase A (phospho-acceptor) domain AMK58_14445 PF00672 HAMP domain AMK58_14445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_14445 PF02743 Cache domain AMK58_14445 PF08448 PAS fold AMK58_14450 PF00579 tRNA synthetases class I (W and Y) AMK58_14450 PF01479 S4 domain AMK58_14455 PF04055 Radical SAM superfamily AMK58_14460 PF13414 TPR repeat AMK58_14460 PF13432 Tetratricopeptide repeat AMK58_14465 PF13176 Tetratricopeptide repeat AMK58_14465 PF13424 Tetratricopeptide repeat AMK58_14465 PF13432 Tetratricopeptide repeat AMK58_14470 PF00535 Glycosyl transferase family 2 AMK58_14475 PF00534 Glycosyl transferases group 1 AMK58_14480 PF04724 AMK58_14480 AMK58_14480 PF13432 Tetratricopeptide repeat AMK58_14480 PF13692 Glycosyl transferases group 1 AMK58_14485 PF13181 Tetratricopeptide repeat AMK58_14485 PF13844 Glycosyl transferase family 41 AMK58_14490 PF13432 Tetratricopeptide repeat AMK58_14495 PF13432 Tetratricopeptide repeat AMK58_14495 PF14559 Tetratricopeptide repeat AMK58_14500 PF13414 TPR repeat AMK58_14500 PF13432 Tetratricopeptide repeat AMK58_14500 PF13844 Glycosyl transferase family 41 AMK58_14505 PF13424 Tetratricopeptide repeat AMK58_14510 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_14510 PF12245 Bacterial Ig-like domain (group 3) AMK58_14510 PF13753 Putative flagellar system-associated repeat AMK58_14515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_14515 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_14515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_14520 PF03328 HpcH/HpaI aldolase/citrate lyase family AMK58_14525 PF13452 N-terminal half of MaoC dehydratase AMK58_14530 PF02515 CoA-transferase family III AMK58_14540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_14540 PF03466 LysR substrate binding domain AMK58_14545 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_14545 PF01799 [2Fe-2S] binding domain AMK58_14550 PF00941 FAD binding domain in molybdopterin dehydrogenase AMK58_14550 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMK58_14555 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_14555 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_14560 PF01370 NAD dependent epimerase/dehydratase family AMK58_14565 PF05494 Toluene tolerance, Ttg2 AMK58_14570 PF13469 Sulfotransferase family AMK58_14580 PF03176 MMPL family AMK58_14585 PF13243 Prenyltransferase-like AMK58_14585 PF13249 Prenyltransferase-like AMK58_14590 PF09912 AMK58_14590 AMK58_14595 PF01048 Phosphorylase superfamily AMK58_14600 PF04055 Radical SAM superfamily AMK58_14600 PF11946 AMK58_14600 AMK58_14610 PF00072 Response regulator receiver domain AMK58_14615 PF02310 B12 binding domain AMK58_14615 PF02607 B12 binding domain AMK58_14620 PF00512 His Kinase A (phospho-acceptor) domain AMK58_14620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_14625 PF06055 AMK58_14625 AMK58_14630 PF00571 CBS domain AMK58_14630 PF01595 AMK58_14630 AMK58_14630 PF03471 Transporter associated domain AMK58_14645 PF12802 MarR family AMK58_14650 PF00072 Response regulator receiver domain AMK58_14655 PF00512 His Kinase A (phospho-acceptor) domain AMK58_14655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_14655 PF05231 AMK58_14655 AMK58_14660 PF01098 AMK58_14660 AMK58_14670 PF13779 AMK58_14670 AMK58_14675 PF01814 Hemerythrin HHE cation binding domain AMK58_14680 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMK58_14680 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMK58_14690 PF00206 Lyase AMK58_14690 PF14698 Argininosuccinate lyase C-terminal AMK58_14695 PF08534 Redoxin AMK58_14700 PF13628 AMK58_14700 AMK58_14705 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMK58_14705 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMK58_14710 PF00766 Electron transfer flavoprotein FAD-binding domain AMK58_14710 PF01012 Electron transfer flavoprotein domain AMK58_14715 PF01012 Electron transfer flavoprotein domain AMK58_14720 PF01923 Cobalamin adenosyltransferase AMK58_14725 PF04588 Hypoxia induced protein conserved region AMK58_14725 PF11137 AMK58_14725 AMK58_14730 PF00232 Glycosyl hydrolase family 1 AMK58_14745 PF01471 Putative peptidoglycan binding domain AMK58_14750 PF06676 AMK58_14750 AMK58_14755 PF07883 Cupin domain AMK58_14760 PF00730 HhH-GPD superfamily base excision DNA repair protein AMK58_14765 PF02627 Carboxymuconolactone decarboxylase family AMK58_14770 PF02709 N-terminal domain of galactosyltransferase AMK58_14770 PF13181 Tetratricopeptide repeat AMK58_14770 PF13432 Tetratricopeptide repeat AMK58_14770 PF14559 Tetratricopeptide repeat AMK58_14775 PF13458 Periplasmic binding protein AMK58_14780 PF13432 Tetratricopeptide repeat AMK58_14780 PF13692 Glycosyl transferases group 1 AMK58_14785 PF03734 L,D-transpeptidase catalytic domain AMK58_14790 PF02653 AMK58_14790 AMK58_14795 PF02653 AMK58_14795 AMK58_14800 PF00005 ABC transporter AMK58_14800 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_14805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_14805 PF00672 HAMP domain AMK58_14810 PF03739 AMK58_14810 AMK58_14820 PF07309 AMK58_14820 AMK58_14830 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_14835 PF00460 Flagella basal body rod protein AMK58_14835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_14845 PF13432 Tetratricopeptide repeat AMK58_14850 PF07372 Protein of unknown function (DUF1491) AMK58_14855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_14855 PF13426 PAS domain AMK58_14860 PF02872 5'-nucleotidase, C-terminal domain AMK58_14865 PF00155 Aminotransferase class I and II AMK58_14865 PF00392 Bacterial regulatory proteins, gntR family AMK58_14870 PF02627 Carboxymuconolactone decarboxylase family AMK58_14875 PF00440 Bacterial regulatory proteins, tetR family AMK58_14880 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_14885 PF00881 Nitroreductase family AMK58_14890 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_14890 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMK58_14895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_14900 PF01888 CbiD AMK58_14905 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_14910 PF01890 Cobalamin synthesis G C-terminus AMK58_14915 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_14920 PF02571 AMK58_14920 AMK58_14925 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_14930 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_14935 PF02570 Precorrin-8X methylmutase AMK58_14940 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMK58_14940 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMK58_14945 PF02514 AMK58_14945 AMK58_14950 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMK58_14950 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMK58_14955 PF00005 ABC transporter AMK58_14955 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_14960 PF00005 ABC transporter AMK58_14965 PF13458 Periplasmic binding protein AMK58_14970 PF02653 AMK58_14970 AMK58_14975 PF02653 AMK58_14975 AMK58_14980 PF00501 AMP-binding enzyme AMK58_14980 PF13193 AMP-binding enzyme C-terminal domain AMK58_14985 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_14990 PF00043 Glutathione S-transferase, C-terminal domain AMK58_14990 PF02798 Glutathione S-transferase, N-terminal domain AMK58_15005 PF00072 Response regulator receiver domain AMK58_15010 PF05899 Protein of unknown function (DUF861) AMK58_15015 PF00128 Alpha amylase, catalytic domain AMK58_15020 PF00128 Alpha amylase, catalytic domain AMK58_15020 PF02446 4-alpha-glucanotransferase AMK58_15020 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMK58_15020 PF11941 Domain of unknown function (DUF3459) AMK58_15040 PF00072 Response regulator receiver domain AMK58_15040 PF00512 His Kinase A (phospho-acceptor) domain AMK58_15040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_15045 PF01047 MarR family AMK58_15055 PF01471 Putative peptidoglycan binding domain AMK58_15055 PF03734 L,D-transpeptidase catalytic domain AMK58_15060 PF00768 D-alanyl-D-alanine carboxypeptidase AMK58_15065 PF10262 Rdx family AMK58_15075 PF13531 Bacterial extracellular solute-binding protein AMK58_15080 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_15085 PF00005 ABC transporter AMK58_15085 PF08402 TOBE domain AMK58_15090 PF00753 Metallo-beta-lactamase superfamily AMK58_15095 PF00999 Sodium/hydrogen exchanger family AMK58_15100 PF04143 AMK58_15100 AMK58_15105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_15105 PF03466 LysR substrate binding domain AMK58_15110 PF00107 Zinc-binding dehydrogenase AMK58_15110 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_15115 PF00756 Putative esterase AMK58_15120 PF16868 AMK58_15120 AMK58_15125 PF06808 AMK58_15125 AMK58_15130 PF07755 Protein of unknown function (DUF1611) AMK58_15130 PF17396 AMK58_15130 AMK58_15135 PF00293 NUDIX domain AMK58_15140 PF01232 Mannitol dehydrogenase Rossmann domain AMK58_15140 PF08125 Mannitol dehydrogenase C-terminal domain AMK58_15145 PF04295 AMK58_15145 AMK58_15145 PF08666 SAF domain AMK58_15150 PF06808 AMK58_15150 AMK58_15155 PF04290 AMK58_15155 AMK58_15160 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_15165 PF00107 Zinc-binding dehydrogenase AMK58_15165 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_15170 PF00392 Bacterial regulatory proteins, gntR family AMK58_15170 PF07729 FCD domain AMK58_15175 PF00873 AcrB/AcrD/AcrF family AMK58_15180 PF13533 Biotin-lipoyl like AMK58_15185 PF02627 Carboxymuconolactone decarboxylase family AMK58_15190 PF12833 Helix-turn-helix domain AMK58_15190 PF12852 Cupin AMK58_15195 PF00300 Histidine phosphatase superfamily (branch 1) AMK58_15200 PF13467 Ribbon-helix-helix domain AMK58_15205 PF02734 DAK2 domain AMK58_15210 PF02733 Dak1 domain AMK58_15215 PF01614 Bacterial transcriptional regulator AMK58_15215 PF09339 IclR helix-turn-helix domain AMK58_15220 PF00701 Dihydrodipicolinate synthetase family AMK58_15225 PF03401 Tripartite tricarboxylate transporter family receptor AMK58_15230 PF03401 Tripartite tricarboxylate transporter family receptor AMK58_15235 PF07331 AMK58_15235 AMK58_15240 PF01970 AMK58_15240 AMK58_15245 PF00171 Aldehyde dehydrogenase family AMK58_15255 PF01548 AMK58_15255 AMK58_15255 PF02371 AMK58_15255 AMK58_15260 PF05598 AMK58_15260 AMK58_15260 PF13751 AMK58_15260 AMK58_15270 PF01471 Putative peptidoglycan binding domain AMK58_15280 PF03795 YCII-related domain AMK58_15295 PF10076 AMK58_15295 AMK58_15300 PF12708 Pectate lyase superfamily protein AMK58_15300 PF13229 Right handed beta helix region AMK58_15315 PF01471 Putative peptidoglycan binding domain AMK58_15315 PF11860 AMK58_15315 AMK58_15330 PF10688 AMK58_15330 AMK58_15335 PF13358 DDE superfamily endonuclease AMK58_15335 PF13384 Homeodomain-like domain AMK58_15345 PF13701 AMK58_15345 AMK58_15350 PF02384 N-6 DNA Methylase AMK58_15350 PF12161 HsdM N-terminal domain AMK58_15355 PF14267 AMK58_15355 AMK58_15360 PF01420 Type I restriction modification DNA specificity domain AMK58_15365 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AMK58_15365 PF04851 Type III restriction enzyme, res subunit AMK58_15405 PF00239 Resolvase, N terminal domain AMK58_15405 PF07508 Recombinase AMK58_15415 PF00589 Phage integrase family AMK58_15420 PF00589 Phage integrase family AMK58_15435 PF07584 AMK58_15435 AMK58_15435 PF13709 Domain of unknown function (DUF4159) AMK58_15440 PF01882 AMK58_15440 AMK58_15445 PF07726 ATPase family associated with various cellular activities (AAA) AMK58_15450 PF06938 Protein of unknown function (DUF1285) AMK58_15455 PF00293 NUDIX domain AMK58_15465 PF01743 Poly A polymerase head domain AMK58_15465 PF12627 Probable RNA and SrmB- binding site of polymerase A AMK58_15470 PF01218 Coproporphyrinogen III oxidase AMK58_15475 PF00588 SpoU rRNA Methylase family AMK58_15480 PF00355 Rieske [2Fe-2S] domain AMK58_15480 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMK58_15485 PF00032 Cytochrome b(C-terminal)/b6/petD AMK58_15485 PF00033 Cytochrome b(N-terminal)/b6/petB AMK58_15490 PF02167 Cytochrome C1 family AMK58_15495 PF06041 Bacterial protein of unknown function (DUF924) AMK58_15500 PF00072 Response regulator receiver domain AMK58_15505 PF04241 AMK58_15505 AMK58_15510 PF01022 Bacterial regulatory protein, arsR family AMK58_15515 PF01206 Sulfurtransferase TusA AMK58_15520 PF00850 Histone deacetylase domain AMK58_15525 PF02609 Exonuclease VII small subunit AMK58_15530 PF00348 Polyprenyl synthetase AMK58_15535 PF02779 Transketolase, pyrimidine binding domain AMK58_15535 PF02780 Transketolase, C-terminal domain AMK58_15535 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMK58_15540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_15540 PF07568 AMK58_15540 AMK58_15545 PF01479 S4 domain AMK58_15545 PF01728 FtsJ-like methyltransferase AMK58_15555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_15555 PF03466 LysR substrate binding domain AMK58_15565 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_15570 PF01047 MarR family AMK58_15575 PF12697 Alpha/beta hydrolase family AMK58_15580 PF00732 GMC oxidoreductase AMK58_15580 PF05199 GMC oxidoreductase AMK58_15585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_15585 PF03466 LysR substrate binding domain AMK58_15590 PF07110 EthD domain AMK58_15595 PF00106 short chain dehydrogenase AMK58_15600 PF00561 alpha/beta hydrolase fold AMK58_15605 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMK58_15615 PF00440 Bacterial regulatory proteins, tetR family AMK58_15620 PF12680 SnoaL-like domain AMK58_15625 PF00561 alpha/beta hydrolase fold AMK58_15630 PF13560 Helix-turn-helix domain AMK58_15635 PF12680 SnoaL-like domain AMK58_15640 PF01205 Uncharacterized protein family UPF0029 AMK58_15645 PF00158 Sigma-54 interaction domain AMK58_15645 PF01590 GAF domain AMK58_15645 PF02954 Bacterial regulatory protein, Fis family AMK58_15650 PF01513 ATP-NAD kinase AMK58_15655 PF00676 Dehydrogenase E1 component AMK58_15660 PF02779 Transketolase, pyrimidine binding domain AMK58_15660 PF02780 Transketolase, C-terminal domain AMK58_15665 PF00364 Biotin-requiring enzyme AMK58_15665 PF12697 Alpha/beta hydrolase family AMK58_15670 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_15675 PF04055 Radical SAM superfamily AMK58_15680 PF02615 Malate/L-lactate dehydrogenase AMK58_15685 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_15690 PF06808 AMK58_15690 AMK58_15695 PF04290 AMK58_15695 AMK58_15700 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_15705 PF00392 Bacterial regulatory proteins, gntR family AMK58_15705 PF07729 FCD domain AMK58_15710 PF01261 Xylose isomerase-like TIM barrel AMK58_15715 PF01614 Bacterial transcriptional regulator AMK58_15715 PF09339 IclR helix-turn-helix domain AMK58_15720 PF02803 Thiolase, C-terminal domain AMK58_15725 PF01796 AMK58_15725 AMK58_15725 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) AMK58_15735 PF01575 MaoC like domain AMK58_15740 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_15745 PF13458 Periplasmic binding protein AMK58_15750 PF02653 AMK58_15750 AMK58_15755 PF00005 ABC transporter AMK58_15755 PF02653 AMK58_15755 AMK58_15760 PF00005 ABC transporter AMK58_15770 PF00501 AMP-binding enzyme AMK58_15770 PF13193 AMP-binding enzyme C-terminal domain AMK58_15780 PF01266 FAD dependent oxidoreductase AMK58_15785 PF14279 AMK58_15785 AMK58_15790 PF00512 His Kinase A (phospho-acceptor) domain AMK58_15790 PF00672 HAMP domain AMK58_15790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_15795 PF00072 Response regulator receiver domain AMK58_15795 PF00486 Transcriptional regulatory protein, C terminal AMK58_15800 PF00072 Response regulator receiver domain AMK58_15800 PF00512 His Kinase A (phospho-acceptor) domain AMK58_15800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_15805 PF00313 'Cold-shock' DNA-binding domain AMK58_15810 PF12802 MarR family AMK58_15815 PF01063 Aminotransferase class IV AMK58_15820 PF13744 Helix-turn-helix domain AMK58_15825 PF05973 AMK58_15825 AMK58_15830 PF00271 Helicase conserved C-terminal domain AMK58_15830 PF02151 UvrB/uvrC motif AMK58_15830 PF04851 Type III restriction enzyme, res subunit AMK58_15830 PF12344 Ultra-violet resistance protein B AMK58_15840 PF10098 AMK58_15840 AMK58_15845 PF07690 Major Facilitator Superfamily AMK58_15850 PF00072 Response regulator receiver domain AMK58_15850 PF00512 His Kinase A (phospho-acceptor) domain AMK58_15850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_15855 PF04364 DNA polymerase III chi subunit, HolC AMK58_15860 PF00883 Cytosol aminopeptidase family, catalytic domain AMK58_15860 PF02789 Cytosol aminopeptidase family, N-terminal domain AMK58_15865 PF03739 AMK58_15865 AMK58_15870 PF00639 PPIC-type PPIASE domain AMK58_15870 PF09312 SurA N-terminal domain AMK58_15875 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMK58_15880 PF00072 Response regulator receiver domain AMK58_15880 PF00512 His Kinase A (phospho-acceptor) domain AMK58_15880 PF00989 PAS fold AMK58_15880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_15880 PF03707 AMK58_15880 AMK58_15890 PF01464 Transglycosylase SLT domain AMK58_15895 PF12697 Alpha/beta hydrolase family AMK58_15905 PF00398 Ribosomal RNA adenine dimethylase AMK58_15910 PF00625 Guanylate kinase AMK58_15915 PF03755 AMK58_15915 AMK58_15915 PF08340 AMK58_15915 AMK58_15920 PF00106 short chain dehydrogenase AMK58_15930 PF06055 AMK58_15930 AMK58_15935 PF00005 ABC transporter AMK58_15935 PF12848 ABC transporter AMK58_15935 PF16326 AMK58_15935 AMK58_15940 PF00334 Nucleoside diphosphate kinase AMK58_15950 PF00551 Formyl transferase AMK58_15955 PF00586 AIR synthase related protein, N-terminal domain AMK58_15955 PF02769 AIR synthase related protein, C-terminal domain AMK58_15960 PF09839 AMK58_15960 AMK58_15965 PF01066 CDP-alcohol phosphatidyltransferase AMK58_15970 PF01594 AMK58_15970 AMK58_15975 PF00308 Bacterial dnaA protein AMK58_15980 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_15985 PF01928 CYTH domain AMK58_15985 PF05235 CHAD domain AMK58_15990 PF00300 Histidine phosphatase superfamily (branch 1) AMK58_15995 PF02503 Polyphosphate kinase middle domain AMK58_15995 PF13089 Polyphosphate kinase N-terminal domain AMK58_15995 PF13090 Polyphosphate kinase C-terminal domain AMK58_16000 PF02541 Ppx/GppA phosphatase family AMK58_16010 PF00570 HRDC domain AMK58_16010 PF01612 3'-5' exonuclease AMK58_16015 PF00152 tRNA synthetases class II (D, K and N) AMK58_16015 PF01336 OB-fold nucleic acid binding domain AMK58_16015 PF02938 GAD domain AMK58_16025 PF08904 AMK58_16025 AMK58_16030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMK58_16030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_16040 PF00512 His Kinase A (phospho-acceptor) domain AMK58_16040 PF01590 GAF domain AMK58_16040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_16045 PF00072 Response regulator receiver domain AMK58_16050 PF00072 Response regulator receiver domain AMK58_16050 PF00990 GGDEF domain AMK58_16055 PF00471 Ribosomal protein L33 AMK58_16060 PF03572 Peptidase family S41 AMK58_16060 PF13180 PDZ domain AMK58_16065 PF00575 S1 RNA binding domain AMK58_16065 PF00773 RNB domain AMK58_16070 PF13751 AMK58_16070 AMK58_16085 PF00270 DEAD/DEAH box helicase AMK58_16085 PF00271 Helicase conserved C-terminal domain AMK58_16085 PF02559 CarD-like/TRCF domain AMK58_16085 PF03461 TRCF domain AMK58_16090 PF09557 AMK58_16090 AMK58_16095 PF09557 AMK58_16095 AMK58_16110 PF10604 Polyketide cyclase / dehydrase and lipid transport AMK58_16115 PF09370 TIM-barrel signal transduction protein AMK58_16120 PF06792 Uncharacterised protein family (UPF0261) AMK58_16125 PF00158 Sigma-54 interaction domain AMK58_16125 PF02954 Bacterial regulatory protein, Fis family AMK58_16125 PF09370 TIM-barrel signal transduction protein AMK58_16130 PF09370 TIM-barrel signal transduction protein AMK58_16135 PF13458 Periplasmic binding protein AMK58_16140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMK58_16140 PF13450 NAD(P)-binding Rossmann-like domain AMK58_16145 PF01266 FAD dependent oxidoreductase AMK58_16150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_16150 PF03466 LysR substrate binding domain AMK58_16155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_16155 PF03466 LysR substrate binding domain AMK58_16160 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_16165 PF00005 ABC transporter AMK58_16165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_16170 PF00005 ABC transporter AMK58_16170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_16175 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16175 PF12911 AMK58_16175 AMK58_16180 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_16190 PF03972 MmgE/PrpD family AMK58_16195 PF13683 AMK58_16195 AMK58_16200 PF04542 Sigma-70 region 2 AMK58_16200 PF08281 Sigma-70, region 4 AMK58_16205 PF00027 Cyclic nucleotide-binding domain AMK58_16205 PF13545 Crp-like helix-turn-helix domain AMK58_16220 PF03626 AMK58_16220 AMK58_16225 PF00510 Cytochrome c oxidase subunit III AMK58_16230 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_16235 PF00034 Cytochrome c AMK58_16235 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMK58_16255 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_16260 PF11821 AMK58_16260 AMK58_16265 PF03916 AMK58_16265 AMK58_16270 PF12838 4Fe-4S dicluster domain AMK58_16275 PF14522 Cytochrome c7 AMK58_16285 PF13379 NMT1-like family AMK58_16290 PF00005 ABC transporter AMK58_16295 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16300 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_16305 PF02615 Malate/L-lactate dehydrogenase AMK58_16310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMK58_16310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_16315 PF13454 FAD-NAD(P)-binding AMK58_16320 PF07859 alpha/beta hydrolase fold AMK58_16355 PF00924 Mechanosensitive ion channel AMK58_16355 PF12607 AMK58_16355 AMK58_16365 PF07690 Major Facilitator Superfamily AMK58_16370 PF00255 Glutathione peroxidase AMK58_16375 PF11911 AMK58_16375 AMK58_16380 PF01207 Dihydrouridine synthase (Dus) AMK58_16385 PF01380 SIS domain AMK58_16385 PF01418 Helix-turn-helix domain, rpiR family AMK58_16390 PF04290 AMK58_16390 AMK58_16395 PF06808 AMK58_16395 AMK58_16400 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_16410 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMK58_16425 PF01131 DNA topoisomerase AMK58_16425 PF01396 AMK58_16425 AMK58_16425 PF01751 Toprim domain AMK58_16425 PF13368 AMK58_16425 AMK58_16430 PF02481 DNA recombination-mediator protein A AMK58_16435 PF13384 Homeodomain-like domain AMK58_16440 PF00072 Response regulator receiver domain AMK58_16440 PF13463 Winged helix DNA-binding domain AMK58_16450 PF00672 HAMP domain AMK58_16450 PF07690 Major Facilitator Superfamily AMK58_16455 PF04392 ABC transporter substrate binding protein AMK58_16465 PF13535 ATP-grasp domain AMK58_16480 PF00072 Response regulator receiver domain AMK58_16480 PF00512 His Kinase A (phospho-acceptor) domain AMK58_16480 PF01627 Hpt domain AMK58_16480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_16480 PF07695 AMK58_16480 AMK58_16485 PF00072 Response regulator receiver domain AMK58_16485 PF00486 Transcriptional regulatory protein, C terminal AMK58_16490 PF00072 Response regulator receiver domain AMK58_16490 PF13463 Winged helix DNA-binding domain AMK58_16500 PF00515 Tetratricopeptide repeat AMK58_16500 PF13432 Tetratricopeptide repeat AMK58_16500 PF13844 Glycosyl transferase family 41 AMK58_16505 PF11776 Domain of unknown function (DUF3315) AMK58_16510 PF00583 Acetyltransferase (GNAT) family AMK58_16515 PF01177 Asp/Glu/Hydantoin racemase AMK58_16520 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16525 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16530 PF13416 Bacterial extracellular solute-binding protein AMK58_16535 PF00005 ABC transporter AMK58_16535 PF08402 TOBE domain AMK58_16540 PF00392 Bacterial regulatory proteins, gntR family AMK58_16540 PF07729 FCD domain AMK58_16545 PF00762 Ferrochelatase AMK58_16550 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMK58_16555 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16560 PF00005 ABC transporter AMK58_16560 PF00571 CBS domain AMK58_16565 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16575 PF01476 LysM domain AMK58_16575 PF04972 BON domain AMK58_16580 PF13180 PDZ domain AMK58_16580 PF13365 Trypsin-like peptidase domain AMK58_16585 PF03061 Thioesterase superfamily AMK58_16590 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_16595 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMK58_16595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_16600 PF00356 Bacterial regulatory proteins, lacI family AMK58_16600 PF13377 Periplasmic binding protein-like domain AMK58_16605 PF01202 Shikimate kinase AMK58_16610 PF00920 Dehydratase family AMK58_16615 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMK58_16620 PF00356 Bacterial regulatory proteins, lacI family AMK58_16620 PF13377 Periplasmic binding protein-like domain AMK58_16625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMK58_16625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMK58_16630 PF00005 ABC transporter AMK58_16635 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_16640 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16645 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_16650 PF00994 Probable molybdopterin binding domain AMK58_16650 PF03453 MoeA N-terminal region (domain I and II) AMK58_16650 PF03454 MoeA C-terminal region (domain IV) AMK58_16655 PF06844 Protein of unknown function (DUF1244) AMK58_16660 PF04016 Domain of unknown function (DUF364) AMK58_16660 PF10649 AMK58_16660 AMK58_16660 PF13938 Domain of unknown function (DUF4213) AMK58_16665 PF01206 Sulfurtransferase TusA AMK58_16670 PF00106 short chain dehydrogenase AMK58_16675 PF01925 AMK58_16675 AMK58_16690 PF00692 dUTPase AMK58_16695 PF00392 Bacterial regulatory proteins, gntR family AMK58_16695 PF07702 UTRA domain AMK58_16700 PF13458 Periplasmic binding protein AMK58_16705 PF02653 AMK58_16705 AMK58_16710 PF02653 AMK58_16710 AMK58_16715 PF00005 ABC transporter AMK58_16715 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_16720 PF00005 ABC transporter AMK58_16725 PF13714 Phosphoenolpyruvate phosphomutase AMK58_16730 PF02538 AMK58_16730 AMK58_16735 PF01968 Hydantoinase/oxoprolinase AMK58_16735 PF05378 AMK58_16735 AMK58_16740 PF00857 Isochorismatase family AMK58_16745 PF00890 FAD binding domain AMK58_16750 PF00330 Aconitase family (aconitate hydratase) AMK58_16755 PF00694 Aconitase C-terminal domain AMK58_16760 PF00072 Response regulator receiver domain AMK58_16760 PF00990 GGDEF domain AMK58_16775 PF03372 Endonuclease/Exonuclease/phosphatase family AMK58_16780 PF01521 Iron-sulphur cluster biosynthesis AMK58_16785 PF01966 HD domain AMK58_16785 PF13286 Phosphohydrolase-associated domain AMK58_16790 PF00750 tRNA synthetases class I (R) AMK58_16790 PF03485 Arginyl tRNA synthetase N terminal domain AMK58_16790 PF05746 DALR anticodon binding domain AMK58_16795 PF05036 Sporulation related domain AMK58_16800 PF00933 Glycosyl hydrolase family 3 N terminal domain AMK58_16810 PF02616 ScpA/B protein AMK58_16815 PF04079 Putative transcriptional regulators (Ypuh-like) AMK58_16820 PF00005 ABC transporter AMK58_16820 PF08402 TOBE domain AMK58_16825 PF02416 mttA/Hcf106 family AMK58_16830 PF02416 mttA/Hcf106 family AMK58_16835 PF00902 Sec-independent protein translocase protein (TatC) AMK58_16840 PF00990 GGDEF domain AMK58_16845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMK58_16845 PF02403 Seryl-tRNA synthetase N-terminal domain AMK58_16850 PF01975 Survival protein SurE AMK58_16855 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AMK58_16860 PF01476 LysM domain AMK58_16860 PF01551 Peptidase family M23 AMK58_16865 PF05673 Protein of unknown function (DUF815) AMK58_16875 PF02699 Preprotein translocase subunit AMK58_16880 PF02355 Protein export membrane protein AMK58_16880 PF07549 SecD/SecF GG Motif AMK58_16885 PF02355 Protein export membrane protein AMK58_16885 PF07549 SecD/SecF GG Motif AMK58_16890 PF04430 Protein of unknown function (DUF498/DUF598) AMK58_16895 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMK58_16895 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMK58_16900 PF01593 Flavin containing amine oxidoreductase AMK58_16905 PF00494 Squalene/phytoene synthase AMK58_16910 PF00494 Squalene/phytoene synthase AMK58_16915 PF00494 Squalene/phytoene synthase AMK58_16920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_16920 PF02743 Cache domain AMK58_16925 PF01134 Glucose inhibited division protein A AMK58_16930 PF10604 Polyketide cyclase / dehydrase and lipid transport AMK58_16940 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_16945 PF00436 Single-strand binding protein family AMK58_16965 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_16970 PF08085 AMK58_16970 AMK58_16975 PF01554 MatE AMK58_16980 PF00521 DNA gyrase/topoisomerase IV, subunit A AMK58_16980 PF03989 DNA gyrase C-terminal domain, beta-propeller AMK58_16985 PF01467 Cytidylyltransferase AMK58_16995 PF12277 AMK58_16995 AMK58_17000 PF03631 AMK58_17000 AMK58_17005 PF07786 AMK58_17005 AMK58_17010 PF07568 AMK58_17010 AMK58_17010 PF13493 Domain of unknown function (DUF4118) AMK58_17010 PF13581 Histidine kinase-like ATPase domain AMK58_17020 PF00920 Dehydratase family AMK58_17025 PF11154 AMK58_17025 AMK58_17030 PF01926 50S ribosome-binding GTPase AMK58_17030 PF13167 AMK58_17030 AMK58_17030 PF16360 AMK58_17030 AMK58_17035 PF13231 AMK58_17035 AMK58_17040 PF00440 Bacterial regulatory proteins, tetR family AMK58_17045 PF09361 AMK58_17045 AMK58_17050 PF01588 Putative tRNA binding domain AMK58_17055 PF00919 Uncharacterized protein family UPF0004 AMK58_17055 PF04055 Radical SAM superfamily AMK58_17060 PF12802 MarR family AMK58_17065 PF11390 AMK58_17065 AMK58_17070 PF02634 FdhD/NarQ family AMK58_17075 PF00037 4Fe-4S binding domain AMK58_17075 PF00384 Molybdopterin oxidoreductase AMK58_17075 PF01568 Molydopterin dinucleotide binding domain AMK58_17075 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_17075 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMK58_17075 PF13510 2Fe-2S iron-sulfur cluster binding domain AMK58_17080 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMK58_17080 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMK58_17085 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AMK58_17090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_17090 PF03466 LysR substrate binding domain AMK58_17095 PF07690 Major Facilitator Superfamily AMK58_17100 PF00072 Response regulator receiver domain AMK58_17100 PF00512 His Kinase A (phospho-acceptor) domain AMK58_17100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_17105 PF00892 EamA-like transporter family AMK58_17110 PF07309 AMK58_17110 AMK58_17110 PF11154 AMK58_17110 AMK58_17115 PF09411 Lipid A 3-O-deacylase (PagL) AMK58_17120 PF01636 Phosphotransferase enzyme family AMK58_17120 PF13671 AAA domain AMK58_17125 PF00582 Universal stress protein family AMK58_17140 PF02152 Dihydroneopterin aldolase AMK58_17145 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMK58_17155 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) AMK58_17160 PF00034 Cytochrome c AMK58_17165 PF01433 Peptidase family M1 AMK58_17165 PF11940 Domain of unknown function (DUF3458) AMK58_17165 PF17432 AMK58_17165 AMK58_17170 PF03713 Domain of unknown function (DUF305) AMK58_17175 PF01521 Iron-sulphur cluster biosynthesis AMK58_17180 PF01883 Domain of unknown function DUF59 AMK58_17185 PF01592 NifU-like N terminal domain AMK58_17190 PF00266 Aminotransferase class-V AMK58_17195 PF01458 Uncharacterized protein family (UPF0051) AMK58_17200 PF00005 ABC transporter AMK58_17205 PF01458 Uncharacterized protein family (UPF0051) AMK58_17210 PF02082 Transcriptional regulator AMK58_17220 PF07332 AMK58_17220 AMK58_17240 PF00072 Response regulator receiver domain AMK58_17240 PF00486 Transcriptional regulatory protein, C terminal AMK58_17245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_17255 PF00892 EamA-like transporter family AMK58_17265 PF09423 PhoD-like phosphatase AMK58_17275 PF04542 Sigma-70 region 2 AMK58_17275 PF08281 Sigma-70, region 4 AMK58_17280 PF08443 RimK-like ATP-grasp domain AMK58_17280 PF14401 AMK58_17280 AMK58_17285 PF00583 Acetyltransferase (GNAT) family AMK58_17285 PF11814 AMK58_17285 AMK58_17290 PF00343 Carbohydrate phosphorylase AMK58_17295 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMK58_17295 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMK58_17305 PF00009 Elongation factor Tu GTP binding domain AMK58_17305 PF16658 AMK58_17305 AMK58_17310 PF00512 His Kinase A (phospho-acceptor) domain AMK58_17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_17310 PF08448 PAS fold AMK58_17315 PF00072 Response regulator receiver domain AMK58_17320 PF03746 LamB/YcsF family AMK58_17325 PF02626 Allophanate hydrolase subunit 2 AMK58_17330 PF02682 Allophanate hydrolase subunit 1 AMK58_17335 PF06808 AMK58_17335 AMK58_17340 PF04290 AMK58_17340 AMK58_17345 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_17350 PF07286 Protein of unknown function (DUF1445) AMK58_17355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_17355 PF03466 LysR substrate binding domain AMK58_17365 PF00873 AcrB/AcrD/AcrF family AMK58_17370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_17370 PF03466 LysR substrate binding domain AMK58_17375 PF01925 AMK58_17375 AMK58_17380 PF00873 AcrB/AcrD/AcrF family AMK58_17385 PF16576 AMK58_17385 AMK58_17390 PF00440 Bacterial regulatory proteins, tetR family AMK58_17390 PF16859 AMK58_17390 AMK58_17395 PF01464 Transglycosylase SLT domain AMK58_17400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_17405 PF09243 AMK58_17405 AMK58_17410 PF01028 Eukaryotic DNA topoisomerase I, catalytic core AMK58_17420 PF00128 Alpha amylase, catalytic domain AMK58_17420 PF16657 AMK58_17420 AMK58_17425 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_17430 PF00043 Glutathione S-transferase, C-terminal domain AMK58_17430 PF02798 Glutathione S-transferase, N-terminal domain AMK58_17435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_17440 PF00072 Response regulator receiver domain AMK58_17450 PF00561 alpha/beta hydrolase fold AMK58_17455 PF01906 Putative heavy-metal-binding AMK58_17465 PF09588 YqaJ-like viral recombinase domain AMK58_17485 PF01810 AMK58_17485 AMK58_17490 PF00989 PAS fold AMK58_17490 PF00990 GGDEF domain AMK58_17495 PF00575 S1 RNA binding domain AMK58_17495 PF09371 Tex-like protein N-terminal domain AMK58_17495 PF12836 Helix-hairpin-helix motif AMK58_17495 PF16921 AMK58_17495 AMK58_17500 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMK58_17505 PF00146 NADH dehydrogenase AMK58_17515 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMK58_17520 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMK58_17520 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMK58_17520 PF00374 Nickel-dependent hydrogenase AMK58_17525 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMK58_17530 PF03819 MazG nucleotide pyrophosphohydrolase domain AMK58_17545 PF00459 Inositol monophosphatase family AMK58_17560 PF01926 50S ribosome-binding GTPase AMK58_17560 PF13167 AMK58_17560 AMK58_17560 PF16360 AMK58_17560 AMK58_17565 PF17209 AMK58_17565 AMK58_17570 PF13419 Haloacid dehalogenase-like hydrolase AMK58_17575 PF01063 Aminotransferase class IV AMK58_17580 PF02080 TrkA-C domain AMK58_17580 PF02254 TrkA-N domain AMK58_17590 PF00072 Response regulator receiver domain AMK58_17590 PF00158 Sigma-54 interaction domain AMK58_17590 PF02954 Bacterial regulatory protein, Fis family AMK58_17595 PF00512 His Kinase A (phospho-acceptor) domain AMK58_17595 PF00672 HAMP domain AMK58_17595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_17595 PF08448 PAS fold AMK58_17600 PF00072 Response regulator receiver domain AMK58_17600 PF00158 Sigma-54 interaction domain AMK58_17600 PF02954 Bacterial regulatory protein, Fis family AMK58_17605 PF00512 His Kinase A (phospho-acceptor) domain AMK58_17605 PF00989 PAS fold AMK58_17605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_17610 PF01207 Dihydrouridine synthase (Dus) AMK58_17615 PF01578 AMK58_17615 AMK58_17620 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMK58_17620 PF02542 YgbB family AMK58_17625 PF02464 Competence-damaged protein AMK58_17630 PF03364 Polyketide cyclase / dehydrase and lipid transport AMK58_17635 PF04055 Radical SAM superfamily AMK58_17635 PF16881 AMK58_17635 AMK58_17640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMK58_17640 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_17645 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMK58_17645 PF00364 Biotin-requiring enzyme AMK58_17645 PF02817 e3 binding domain AMK58_17650 PF00364 Biotin-requiring enzyme AMK58_17650 PF02779 Transketolase, pyrimidine binding domain AMK58_17650 PF02780 Transketolase, C-terminal domain AMK58_17655 PF00676 Dehydrogenase E1 component AMK58_17660 PF04977 Septum formation initiator AMK58_17665 PF03061 Thioesterase superfamily AMK58_17670 PF00204 DNA gyrase B AMK58_17670 PF00986 DNA gyrase B subunit, carboxyl terminus AMK58_17670 PF01751 Toprim domain AMK58_17670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_17680 PF12697 Alpha/beta hydrolase family AMK58_17685 PF00857 Isochorismatase family AMK58_17690 PF00270 DEAD/DEAH box helicase AMK58_17690 PF00271 Helicase conserved C-terminal domain AMK58_17695 PF01037 AsnC family AMK58_17700 PF03968 OstA-like protein AMK58_17700 PF04453 Organic solvent tolerance protein AMK58_17710 PF13181 Tetratricopeptide repeat AMK58_17710 PF13432 Tetratricopeptide repeat AMK58_17710 PF13844 Glycosyl transferase family 41 AMK58_17715 PF07027 AMK58_17715 AMK58_17720 PF13617 AMK58_17720 AMK58_17725 PF11739 AMK58_17725 AMK58_17730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMK58_17735 PF00069 Protein kinase domain AMK58_17740 PF01263 Aldose 1-epimerase AMK58_17745 PF07007 Protein of unknown function (DUF1311) AMK58_17755 PF01841 Transglutaminase-like superfamily AMK58_17755 PF08379 AMK58_17755 AMK58_17755 PF09899 AMK58_17755 AMK58_17765 PF04168 AMK58_17765 AMK58_17765 PF14403 AMK58_17765 AMK58_17770 PF01841 Transglutaminase-like superfamily AMK58_17770 PF08379 AMK58_17770 AMK58_17775 PF00873 AcrB/AcrD/AcrF family AMK58_17780 PF16576 AMK58_17780 AMK58_17785 PF00149 Calcineurin-like phosphoesterase AMK58_17790 PF00535 Glycosyl transferase family 2 AMK58_17795 PF00574 Clp protease AMK58_17810 PF13432 Tetratricopeptide repeat AMK58_17815 PF05128 AMK58_17815 AMK58_17820 PF04317 AMK58_17820 AMK58_17825 PF01926 50S ribosome-binding GTPase AMK58_17825 PF07650 KH domain AMK58_17830 PF00035 Double-stranded RNA binding motif AMK58_17830 PF14622 Ribonuclease-III-like AMK58_17835 PF00717 Peptidase S24-like AMK58_17840 PF01648 4'-phosphopantetheinyl transferase superfamily AMK58_17845 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMK58_17850 PF01230 HIT domain AMK58_17855 PF02824 TGS domain AMK58_17855 PF04607 Region found in RelA / SpoT proteins AMK58_17855 PF13291 ACT domain AMK58_17855 PF13328 HD domain AMK58_17860 PF01192 RNA polymerase Rpb6 AMK58_17865 PF01936 NYN domain AMK58_17870 PF13449 Esterase-like activity of phytase AMK58_17875 PF07568 AMK58_17875 AMK58_17880 PF02579 Dinitrogenase iron-molybdenum cofactor AMK58_17885 PF12802 MarR family AMK58_17890 PF09849 AMK58_17890 AMK58_17895 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_17895 PF02190 ATP-dependent protease La (LON) domain AMK58_17895 PF05362 Lon protease (S16) C-terminal proteolytic domain AMK58_17900 PF00011 Hsp20/alpha crystallin family AMK58_17905 PF11154 AMK58_17905 AMK58_17915 PF00582 Universal stress protein family AMK58_17920 PF00657 GDSL-like Lipase/Acylhydrolase AMK58_17920 PF03797 Autotransporter beta-domain AMK58_17925 PF01292 Prokaryotic cytochrome b561 AMK58_17930 PF00672 HAMP domain AMK58_17930 PF07228 Stage II sporulation protein E (SpoIIE) AMK58_17935 PF01435 Peptidase family M48 AMK58_17940 PF00226 DnaJ domain AMK58_17940 PF01556 DnaJ C terminal domain AMK58_17945 PF13591 MerR HTH family regulatory protein AMK58_17955 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_17960 PF01627 Hpt domain AMK58_17965 PF00072 Response regulator receiver domain AMK58_17975 PF13409 Glutathione S-transferase, N-terminal domain AMK58_17975 PF13410 Glutathione S-transferase, C-terminal domain AMK58_17980 PF03358 NADPH-dependent FMN reductase AMK58_17985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_17985 PF03466 LysR substrate binding domain AMK58_17990 PF13429 Tetratricopeptide repeat AMK58_17990 PF13847 Methyltransferase domain AMK58_17995 PF01464 Transglycosylase SLT domain AMK58_18000 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ AMK58_18015 PF04273 Putative phosphatase (DUF442) AMK58_18020 PF14559 Tetratricopeptide repeat AMK58_18025 PF00072 Response regulator receiver domain AMK58_18025 PF00512 His Kinase A (phospho-acceptor) domain AMK58_18025 PF00989 PAS fold AMK58_18025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_18030 PF00005 ABC transporter AMK58_18030 PF00664 ABC transporter transmembrane region AMK58_18035 PF01734 Patatin-like phospholipase AMK58_18045 PF13302 Acetyltransferase (GNAT) domain AMK58_18055 PF13609 Gram-negative porin AMK58_18060 PF00999 Sodium/hydrogen exchanger family AMK58_18060 PF03471 Transporter associated domain AMK58_18065 PF00563 EAL domain AMK58_18065 PF00990 GGDEF domain AMK58_18065 PF08448 PAS fold AMK58_18065 PF13426 PAS domain AMK58_18070 PF04542 Sigma-70 region 2 AMK58_18070 PF04545 Sigma-70, region 4 AMK58_18075 PF00072 Response regulator receiver domain AMK58_18080 PF01551 Peptidase family M23 AMK58_18090 PF04461 Protein of unknown function (DUF520) AMK58_18105 PF01618 AMK58_18105 AMK58_18110 PF01814 Hemerythrin HHE cation binding domain AMK58_18115 PF11272 AMK58_18115 AMK58_18120 PF00005 ABC transporter AMK58_18120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_18125 PF00005 ABC transporter AMK58_18125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_18130 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_18130 PF12911 AMK58_18130 AMK58_18135 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_18140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_18145 PF13508 Acetyltransferase (GNAT) domain AMK58_18150 PF08241 Methyltransferase domain AMK58_18155 PF13560 Helix-turn-helix domain AMK58_18160 PF00892 EamA-like transporter family AMK58_18165 PF01175 Urocanase AMK58_18165 PF17391 AMK58_18165 AMK58_18165 PF17392 AMK58_18165 AMK58_18170 PF01850 PIN domain AMK58_18175 PF03869 Arc-like DNA binding domain AMK58_18180 PF01979 Amidohydrolase family AMK58_18185 PF04794 YdjC-like protein AMK58_18190 PF08241 Methyltransferase domain AMK58_18195 PF04138 AMK58_18195 AMK58_18200 PF00501 AMP-binding enzyme AMK58_18200 PF13193 AMP-binding enzyme C-terminal domain AMK58_18205 PF01047 MarR family AMK58_18215 PF00072 Response regulator receiver domain AMK58_18220 PF00551 Formyl transferase AMK58_18240 PF01618 AMK58_18240 AMK58_18245 PF01520 N-acetylmuramoyl-L-alanine amidase AMK58_18250 PF04972 BON domain AMK58_18260 PF13424 Tetratricopeptide repeat AMK58_18260 PF13432 Tetratricopeptide repeat AMK58_18260 PF13489 Methyltransferase domain AMK58_18265 PF00515 Tetratricopeptide repeat AMK58_18265 PF13181 Tetratricopeptide repeat AMK58_18265 PF13432 Tetratricopeptide repeat AMK58_18270 PF04325 Protein of unknown function (DUF465) AMK58_18275 PF07719 Tetratricopeptide repeat AMK58_18275 PF13181 Tetratricopeptide repeat AMK58_18275 PF13432 Tetratricopeptide repeat AMK58_18275 PF14559 Tetratricopeptide repeat AMK58_18280 PF07378 AMK58_18280 AMK58_18285 PF00669 Bacterial flagellin N-terminal helical region AMK58_18285 PF00700 Bacterial flagellin C-terminal helical region AMK58_18290 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMK58_18290 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMK58_18295 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_18300 PF00501 AMP-binding enzyme AMK58_18300 PF13193 AMP-binding enzyme C-terminal domain AMK58_18305 PF00550 Phosphopantetheine attachment site AMK58_18310 PF12697 Alpha/beta hydrolase family AMK58_18320 PF02348 Cytidylyltransferase AMK58_18325 PF03102 NeuB family AMK58_18325 PF08666 SAF domain AMK58_18330 PF13692 Glycosyl transferases group 1 AMK58_18335 PF13428 Tetratricopeptide repeat AMK58_18335 PF13432 Tetratricopeptide repeat AMK58_18340 PF00483 Nucleotidyl transferase AMK58_18345 PF13302 Acetyltransferase (GNAT) domain AMK58_18350 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_18355 PF00355 Rieske [2Fe-2S] domain AMK58_18355 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMK58_18360 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMK58_18360 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMK58_18365 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_18370 PF04101 Glycosyltransferase family 28 C-terminal domain AMK58_18380 PF02322 AMK58_18380 AMK58_18385 PF01654 AMK58_18385 AMK58_18390 PF00140 Sigma-70 factor, region 1 AMK58_18390 PF04542 Sigma-70 region 2 AMK58_18390 PF04545 Sigma-70, region 4 AMK58_18400 PF03886 Protein of unknown function (DUF330) AMK58_18405 PF02470 AMK58_18405 AMK58_18410 PF00005 ABC transporter AMK58_18415 PF02405 AMK58_18415 AMK58_18415 PF13466 STAS domain AMK58_18420 PF00156 Phosphoribosyl transferase domain AMK58_18425 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMK58_18425 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMK58_18430 PF02661 Fic/DOC family AMK58_18435 PF01814 Hemerythrin HHE cation binding domain AMK58_18440 PF04972 BON domain AMK58_18445 PF01928 CYTH domain AMK58_18455 PF01544 CorA-like Mg2+ transporter protein AMK58_18465 PF00149 Calcineurin-like phosphoesterase AMK58_18470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_18470 PF03466 LysR substrate binding domain AMK58_18475 PF00248 Aldo/keto reductase family AMK58_18480 PF00224 Pyruvate kinase, barrel domain AMK58_18480 PF02887 Pyruvate kinase, alpha/beta domain AMK58_18485 PF01527 Transposase AMK58_18490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_18490 PF03466 LysR substrate binding domain AMK58_18495 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_18495 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AMK58_18495 PF13753 Putative flagellar system-associated repeat AMK58_18495 PF14252 AMK58_18495 AMK58_18500 PF00872 AMK58_18500 AMK58_18505 PF00117 Glutamine amidotransferase class-I AMK58_18505 PF00958 GMP synthase C terminal domain AMK58_18505 PF02540 NAD synthase AMK58_18510 PF08445 FR47-like protein AMK58_18515 PF06516 AMK58_18515 AMK58_18530 PF01189 NOL1/NOP2/sun family AMK58_18535 PF03562 MltA specific insert domain AMK58_18535 PF06725 3D domain AMK58_18540 PF00583 Acetyltransferase (GNAT) family AMK58_18545 PF06906 AMK58_18545 AMK58_18550 PF00588 SpoU rRNA Methylase family AMK58_18555 PF00478 IMP dehydrogenase / GMP reductase domain AMK58_18555 PF00571 CBS domain AMK58_18560 PF01728 FtsJ-like methyltransferase AMK58_18565 PF02541 Ppx/GppA phosphatase family AMK58_18580 PF14706 Transposase DNA-binding AMK58_18585 PF00113 Enolase, C-terminal TIM barrel domain AMK58_18585 PF03952 Enolase, N-terminal domain AMK58_18590 PF01636 Phosphotransferase enzyme family AMK58_18595 PF00392 Bacterial regulatory proteins, gntR family AMK58_18595 PF07729 FCD domain AMK58_18600 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AMK58_18605 PF06808 AMK58_18605 AMK58_18610 PF04290 AMK58_18610 AMK58_18615 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_18620 PF00465 Iron-containing alcohol dehydrogenase AMK58_18625 PF13714 Phosphoenolpyruvate phosphomutase AMK58_18635 PF12697 Alpha/beta hydrolase family AMK58_18640 PF04116 AMK58_18640 AMK58_18660 PF00933 Glycosyl hydrolase family 3 N terminal domain AMK58_18665 PF06123 AMK58_18665 AMK58_18670 PF00512 His Kinase A (phospho-acceptor) domain AMK58_18670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_18675 PF13551 Winged helix-turn helix AMK58_18710 PF07370 AMK58_18710 AMK58_18720 PF00892 EamA-like transporter family AMK58_18725 PF00005 ABC transporter AMK58_18725 PF03459 TOBE domain AMK58_18730 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_18735 PF13531 Bacterial extracellular solute-binding protein AMK58_18740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_18740 PF03459 TOBE domain AMK58_18745 PF04402 Protein of unknown function (DUF541) AMK58_18755 PF03350 AMK58_18755 AMK58_18760 PF05638 Protein of unknown function (DUF796) AMK58_18765 PF06812 AMK58_18765 AMK58_18770 PF14331 AMK58_18770 AMK58_18775 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) AMK58_18780 PF05936 AMK58_18780 AMK58_18790 PF05036 Sporulation related domain AMK58_18795 PF05036 Sporulation related domain AMK58_18800 PF01464 Transglycosylase SLT domain AMK58_18805 PF07228 Stage II sporulation protein E (SpoIIE) AMK58_18830 PF05591 AMK58_18830 AMK58_18835 PF05943 AMK58_18835 AMK58_18840 PF05638 Protein of unknown function (DUF796) AMK58_18845 PF04965 Gene 25-like lysozyme AMK58_18850 PF05947 AMK58_18850 AMK58_18855 PF06996 AMK58_18855 AMK58_18860 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_18860 PF02861 Clp amino terminal domain AMK58_18860 PF07724 AAA domain (Cdc48 subfamily) AMK58_18860 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_18865 PF05954 Phage late control gene D protein (GPD) AMK58_18875 PF14107 AMK58_18875 AMK58_18880 PF00817 impB/mucB/samB family AMK58_18880 PF11799 impB/mucB/samB family C-terminal domain AMK58_18885 PF12973 ChrR Cupin-like domain AMK58_18890 PF04542 Sigma-70 region 2 AMK58_18890 PF04545 Sigma-70, region 4 AMK58_18895 PF00158 Sigma-54 interaction domain AMK58_18895 PF02954 Bacterial regulatory protein, Fis family AMK58_18895 PF08448 PAS fold AMK58_18900 PF01228 Glycine radical AMK58_18900 PF02901 Pyruvate formate lyase AMK58_18905 PF03886 Protein of unknown function (DUF330) AMK58_18910 PF02470 AMK58_18910 AMK58_18915 PF04403 AMK58_18915 AMK58_18925 PF13374 Tetratricopeptide repeat AMK58_18925 PF13432 Tetratricopeptide repeat AMK58_18930 PF00390 Malic enzyme, N-terminal domain AMK58_18930 PF01515 Phosphate acetyl/butaryl transferase AMK58_18930 PF03949 Malic enzyme, NAD binding domain AMK58_18935 PF00375 Sodium:dicarboxylate symporter family AMK58_18940 PF00512 His Kinase A (phospho-acceptor) domain AMK58_18940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_18945 PF00072 Response regulator receiver domain AMK58_18945 PF00158 Sigma-54 interaction domain AMK58_18945 PF02954 Bacterial regulatory protein, Fis family AMK58_18950 PF13374 Tetratricopeptide repeat AMK58_18950 PF13432 Tetratricopeptide repeat AMK58_18950 PF13844 Glycosyl transferase family 41 AMK58_18955 PF09929 AMK58_18955 AMK58_18960 PF01642 Methylmalonyl-CoA mutase AMK58_18960 PF02310 B12 binding domain AMK58_18965 PF02632 BioY family AMK58_18970 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMK58_18970 PF00364 Biotin-requiring enzyme AMK58_18970 PF02785 Biotin carboxylase C-terminal domain AMK58_18970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMK58_18975 PF01039 Carboxyl transferase domain AMK58_18980 PF01381 Helix-turn-helix AMK58_18980 PF06114 Domain of unknown function (DUF955) AMK58_18980 PF09856 AMK58_18980 AMK58_18985 PF01177 Asp/Glu/Hydantoin racemase AMK58_19000 PF00512 His Kinase A (phospho-acceptor) domain AMK58_19000 PF00989 PAS fold AMK58_19000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_19000 PF08447 PAS fold AMK58_19000 PF13188 PAS domain AMK58_19005 PF02637 GatB domain AMK58_19005 PF02934 GatB/GatE catalytic domain AMK58_19010 PF01425 Amidase AMK58_19015 PF02686 Glu-tRNAGln amidotransferase C subunit AMK58_19020 PF13302 Acetyltransferase (GNAT) domain AMK58_19025 PF03652 Uncharacterised protein family (UPF0081) AMK58_19030 PF03547 AMK58_19030 AMK58_19040 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMK58_19045 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMK58_19050 PF06568 AMK58_19050 AMK58_19055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_19055 PF03466 LysR substrate binding domain AMK58_19070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMK58_19070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMK58_19075 PF01979 Amidohydrolase family AMK58_19080 PF02660 AMK58_19080 AMK58_19085 PF00072 Response regulator receiver domain AMK58_19090 PF04851 Type III restriction enzyme, res subunit AMK58_19095 PF07883 Cupin domain AMK58_19105 PF04307 AMK58_19105 AMK58_19115 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_19115 PF01799 [2Fe-2S] binding domain AMK58_19120 PF00941 FAD binding domain in molybdopterin dehydrogenase AMK58_19120 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMK58_19125 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_19125 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_19130 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_19130 PF13192 Thioredoxin domain AMK58_19135 PF00578 AhpC/TSA family AMK58_19135 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMK58_19140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_19140 PF03466 LysR substrate binding domain AMK58_19145 PF01381 Helix-turn-helix AMK58_19145 PF07883 Cupin domain AMK58_19150 PF13531 Bacterial extracellular solute-binding protein AMK58_19155 PF02153 Prephenate dehydrogenase AMK58_19160 PF00155 Aminotransferase class I and II AMK58_19165 PF01817 Chorismate mutase type II AMK58_19170 PF00561 alpha/beta hydrolase fold AMK58_19175 PF07021 Methionine biosynthesis protein MetW AMK58_19180 PF05239 PRC-barrel domain AMK58_19185 PF06821 Serine hydrolase AMK58_19190 PF08241 Methyltransferase domain AMK58_19195 PF00753 Metallo-beta-lactamase superfamily AMK58_19195 PF16123 AMK58_19195 AMK58_19200 PF13417 Glutathione S-transferase, N-terminal domain AMK58_19205 PF06172 Cupin superfamily (DUF985) AMK58_19210 PF00892 EamA-like transporter family AMK58_19215 PF00892 EamA-like transporter family AMK58_19220 PF05050 Methyltransferase FkbM domain AMK58_19230 PF01979 Amidohydrolase family AMK58_19230 PF13382 Adenine deaminase C-terminal domain AMK58_19240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_19240 PF00672 HAMP domain AMK58_19245 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMK58_19245 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AMK58_19250 PF12800 4Fe-4S binding domain AMK58_19250 PF13247 4Fe-4S dicluster domain AMK58_19255 PF03916 AMK58_19255 AMK58_19260 PF00374 Nickel-dependent hydrogenase AMK58_19265 PF01750 Hydrogenase maturation protease AMK58_19270 PF00753 Metallo-beta-lactamase superfamily AMK58_19275 PF00753 Metallo-beta-lactamase superfamily AMK58_19280 PF04955 AMK58_19280 AMK58_19285 PF01455 HupF/HypC family AMK58_19290 PF00301 Rubredoxin AMK58_19290 PF11939 Protein of unknown function (DUF3457) AMK58_19295 PF00374 Nickel-dependent hydrogenase AMK58_19300 PF01155 Hydrogenase expression/synthesis hypA family AMK58_19305 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMK58_19310 PF01810 AMK58_19310 AMK58_19315 PF00708 Acylphosphatase AMK58_19315 PF01300 Telomere recombination AMK58_19315 PF07503 HypF finger AMK58_19320 PF01455 HupF/HypC family AMK58_19325 PF00586 AIR synthase related protein, N-terminal domain AMK58_19325 PF02769 AIR synthase related protein, C-terminal domain AMK58_19330 PF02397 AMK58_19330 AMK58_19335 PF03572 Peptidase family S41 AMK58_19335 PF13180 PDZ domain AMK58_19340 PF00313 'Cold-shock' DNA-binding domain AMK58_19345 PF02810 SEC-C motif AMK58_19350 PF00027 Cyclic nucleotide-binding domain AMK58_19355 PF01351 Ribonuclease HII AMK58_19360 PF01555 DNA methylase AMK58_19365 PF02152 Dihydroneopterin aldolase AMK58_19370 PF00989 PAS fold AMK58_19370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_19375 PF06707 Protein of unknown function (DUF1194) AMK58_19380 PF00730 HhH-GPD superfamily base excision DNA repair protein AMK58_19380 PF10576 Iron-sulfur binding domain of endonuclease III AMK58_19380 PF14815 NUDIX domain AMK58_19385 PF05258 AMK58_19385 AMK58_19390 PF13462 Thioredoxin AMK58_19395 PF02463 RecF/RecN/SMC N terminal domain AMK58_19400 PF01266 FAD dependent oxidoreductase AMK58_19410 PF03922 OmpW family AMK58_19415 PF00571 CBS domain AMK58_19420 PF00072 Response regulator receiver domain AMK58_19420 PF00196 Bacterial regulatory proteins, luxR family AMK58_19425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_19425 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_19425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_19425 PF12418 AMK58_19425 AMK58_19425 PF12806 AMK58_19425 AMK58_19430 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_19430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMK58_19430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMK58_19435 PF00108 Thiolase, N-terminal domain AMK58_19435 PF02803 Thiolase, C-terminal domain AMK58_19440 PF13411 MerR HTH family regulatory protein AMK58_19450 PF00207 Alpha-2-macroglobulin family AMK58_19450 PF01835 MG2 domain AMK58_19450 PF07703 Alpha-2-macroglobulin family N-terminal region AMK58_19450 PF11974 Alpha-2-macroglobulin MG1 domain AMK58_19455 PF00512 His Kinase A (phospho-acceptor) domain AMK58_19455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_19460 PF00155 Aminotransferase class I and II AMK58_19470 PF01514 Secretory protein of YscJ/FliF family AMK58_19470 PF08345 AMK58_19470 AMK58_19475 PF02108 AMK58_19475 AMK58_19480 PF01052 Surface presentation of antigens (SPOA) AMK58_19485 PF01618 AMK58_19485 AMK58_19490 PF00072 Response regulator receiver domain AMK58_19490 PF00158 Sigma-54 interaction domain AMK58_19490 PF02954 Bacterial regulatory protein, Fis family AMK58_19495 PF00771 FHIPEP family AMK58_19500 PF00448 SRP54-type protein, GTPase domain AMK58_19505 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_19525 PF00990 GGDEF domain AMK58_19525 PF02743 Cache domain AMK58_19530 PF02050 Flagellar FliJ protein AMK58_19535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMK58_19535 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMK58_19540 PF00072 Response regulator receiver domain AMK58_19540 PF00486 Transcriptional regulatory protein, C terminal AMK58_19545 PF06568 AMK58_19545 AMK58_19550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_19550 PF03466 LysR substrate binding domain AMK58_19555 PF01739 CheR methyltransferase, SAM binding domain AMK58_19555 PF03705 CheR methyltransferase, all-alpha domain AMK58_19560 PF00072 Response regulator receiver domain AMK58_19560 PF01339 CheB methylesterase AMK58_19565 PF00072 Response regulator receiver domain AMK58_19570 PF01584 CheW-like domain AMK58_19575 PF00072 Response regulator receiver domain AMK58_19575 PF01584 CheW-like domain AMK58_19575 PF01627 Hpt domain AMK58_19575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_19575 PF02895 Signal transducing histidine kinase, homodimeric domain AMK58_19580 PF10090 Uncharacterized protein conserved in bacteria (DUF2328) AMK58_19585 PF12073 AMK58_19585 AMK58_19590 PF00034 Cytochrome c AMK58_19595 PF01804 Penicillin amidase AMK58_19600 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_19605 PF01613 Flavin reductase like domain AMK58_19610 PF00691 OmpA family AMK58_19610 PF13677 AMK58_19610 AMK58_19615 PF14403 AMK58_19615 AMK58_19620 PF04168 AMK58_19620 AMK58_19625 PF04376 AMK58_19625 AMK58_19625 PF04377 AMK58_19625 AMK58_19630 PF04290 AMK58_19630 AMK58_19635 PF06808 AMK58_19635 AMK58_19640 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_19645 PF00521 DNA gyrase/topoisomerase IV, subunit A AMK58_19645 PF03989 DNA gyrase C-terminal domain, beta-propeller AMK58_19650 PF02565 Recombination protein O C terminal AMK58_19650 PF11967 Recombination protein O N terminal AMK58_19655 PF00563 EAL domain AMK58_19655 PF00990 GGDEF domain AMK58_19655 PF08447 PAS fold AMK58_19670 PF07690 Major Facilitator Superfamily AMK58_19675 PF00529 HlyD family secretion protein AMK58_19675 PF16576 AMK58_19675 AMK58_19680 PF00440 Bacterial regulatory proteins, tetR family AMK58_19680 PF14246 AefR-like transcriptional repressor, C-terminal region AMK58_19685 PF11906 AMK58_19685 AMK58_19685 PF13717 AMK58_19685 AMK58_19690 PF00005 ABC transporter AMK58_19700 PF02698 DUF218 domain AMK58_19705 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_19710 PF01553 Acyltransferase AMK58_19720 PF00317 Ribonucleotide reductase, all-alpha domain AMK58_19720 PF02867 Ribonucleotide reductase, barrel domain AMK58_19725 PF09335 AMK58_19725 AMK58_19730 PF00117 Glutamine amidotransferase class-I AMK58_19735 PF00155 Aminotransferase class I and II AMK58_19735 PF00392 Bacterial regulatory proteins, gntR family AMK58_19740 PF03594 AMK58_19740 AMK58_19745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_19745 PF03466 LysR substrate binding domain AMK58_19750 PF02525 Flavodoxin-like fold AMK58_19755 PF04657 AMK58_19755 AMK58_19760 PF07883 Cupin domain AMK58_19760 PF12833 Helix-turn-helix domain AMK58_19765 PF00005 ABC transporter AMK58_19765 PF12848 ABC transporter AMK58_19775 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_19780 PF01924 Hydrogenase formation hypA family AMK58_19785 PF08239 Bacterial SH3 domain AMK58_19790 PF01433 Peptidase family M1 AMK58_19795 PF04752 AMK58_19795 AMK58_19800 PF09898 AMK58_19800 AMK58_19805 PF00675 Insulinase (Peptidase family M16) AMK58_19805 PF05193 Peptidase M16 inactive domain AMK58_19815 PF03994 AMK58_19815 AMK58_19820 PF10679 AMK58_19820 AMK58_19825 PF00330 Aconitase family (aconitate hydratase) AMK58_19825 PF06434 Aconitate hydratase 2 N-terminus AMK58_19825 PF11791 Aconitate B N-terminal domain AMK58_19830 PF02311 AraC-like ligand binding domain AMK58_19830 PF12833 Helix-turn-helix domain AMK58_19835 PF07690 Major Facilitator Superfamily AMK58_19845 PF03737 Demethylmenaquinone methyltransferase AMK58_19855 PF01865 Protein of unknown function DUF47 AMK58_19860 PF01384 AMK58_19860 AMK58_19870 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_19870 PF13191 AAA ATPase domain AMK58_19875 PF13467 Ribbon-helix-helix domain AMK58_19885 PF02624 YcaO-like family AMK58_19890 PF07812 AMK58_19890 AMK58_19895 PF00027 Cyclic nucleotide-binding domain AMK58_19895 PF13545 Crp-like helix-turn-helix domain AMK58_19900 PF13467 Ribbon-helix-helix domain AMK58_19905 PF00512 His Kinase A (phospho-acceptor) domain AMK58_19905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_19905 PF08448 PAS fold AMK58_19905 PF17159 AMK58_19905 AMK58_19910 PF00072 Response regulator receiver domain AMK58_19915 PF01370 NAD dependent epimerase/dehydratase family AMK58_19920 PF01895 PhoU domain AMK58_19920 PF02690 AMK58_19920 AMK58_19925 PF00892 EamA-like transporter family AMK58_19930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_19930 PF03466 LysR substrate binding domain AMK58_19940 PF00672 HAMP domain AMK58_19940 PF00990 GGDEF domain AMK58_19950 PF04102 SlyX AMK58_19960 PF01475 Ferric uptake regulator family AMK58_19965 PF13480 Acetyltransferase (GNAT) domain AMK58_19975 PF12850 Calcineurin-like phosphoesterase superfamily domain AMK58_19980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_19980 PF00672 HAMP domain AMK58_19980 PF12729 AMK58_19980 AMK58_19985 PF13229 Right handed beta helix region AMK58_19985 PF16841 AMK58_19985 AMK58_19990 PF05433 AMK58_19990 AMK58_19990 PF16998 AMK58_19990 AMK58_19995 PF05711 Macrocin-O-methyltransferase (TylF) AMK58_19995 PF13432 Tetratricopeptide repeat AMK58_19995 PF14559 Tetratricopeptide repeat AMK58_20040 PF00027 Cyclic nucleotide-binding domain AMK58_20040 PF13545 Crp-like helix-turn-helix domain AMK58_20055 PF00271 Helicase conserved C-terminal domain AMK58_20055 PF12513 Mitochondrial degradasome RNA helicase subunit C terminal AMK58_20060 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AMK58_20060 PF13450 NAD(P)-binding Rossmann-like domain AMK58_20065 PF03167 Uracil DNA glycosylase superfamily AMK58_20070 PF01464 Transglycosylase SLT domain AMK58_20075 PF00994 Probable molybdopterin binding domain AMK58_20085 PF13414 TPR repeat AMK58_20085 PF13432 Tetratricopeptide repeat AMK58_20090 PF00288 GHMP kinases N terminal domain AMK58_20090 PF08544 GHMP kinases C terminal AMK58_20095 PF05433 AMK58_20095 AMK58_20105 PF00122 E1-E2 ATPase AMK58_20105 PF00403 Heavy-metal-associated domain AMK58_20105 PF00702 haloacid dehalogenase-like hydrolase AMK58_20110 PF00403 Heavy-metal-associated domain AMK58_20115 PF09622 AMK58_20115 AMK58_20130 PF02678 Pirin AMK58_20135 PF03458 AMK58_20135 AMK58_20140 PF14542 GCN5-related N-acetyl-transferase AMK58_20145 PF02627 Carboxymuconolactone decarboxylase family AMK58_20150 PF00376 MerR family regulatory protein AMK58_20150 PF09278 MerR, DNA binding AMK58_20155 PF00005 ABC transporter AMK58_20160 PF01925 AMK58_20160 AMK58_20165 PF00501 AMP-binding enzyme AMK58_20165 PF13193 AMP-binding enzyme C-terminal domain AMK58_20170 PF16998 AMK58_20170 AMK58_20175 PF00515 Tetratricopeptide repeat AMK58_20175 PF13181 Tetratricopeptide repeat AMK58_20175 PF13432 Tetratricopeptide repeat AMK58_20175 PF13844 Glycosyl transferase family 41 AMK58_20175 PF14559 Tetratricopeptide repeat AMK58_20185 PF13432 Tetratricopeptide repeat AMK58_20185 PF14559 Tetratricopeptide repeat AMK58_20190 PF00535 Glycosyl transferase family 2 AMK58_20200 PF07869 AMK58_20200 AMK58_20205 PF04632 AMK58_20205 AMK58_20210 PF13437 HlyD family secretion protein AMK58_20210 PF13533 Biotin-lipoyl like AMK58_20215 PF12802 MarR family AMK58_20220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_20220 PF03466 LysR substrate binding domain AMK58_20225 PF07690 Major Facilitator Superfamily AMK58_20230 PF00248 Aldo/keto reductase family AMK58_20235 PF00939 Sodium:sulfate symporter transmembrane region AMK58_20235 PF02080 TrkA-C domain AMK58_20235 PF03600 Citrate transporter AMK58_20240 PF05170 AMK58_20240 AMK58_20260 PF00892 EamA-like transporter family AMK58_20265 PF02515 CoA-transferase family III AMK58_20270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_20270 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_20270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_20275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_20275 PF03466 LysR substrate binding domain AMK58_20280 PF00005 ABC transporter AMK58_20280 PF08402 TOBE domain AMK58_20285 PF13416 Bacterial extracellular solute-binding protein AMK58_20290 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_20295 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_20300 PF07883 Cupin domain AMK58_20300 PF13560 Helix-turn-helix domain AMK58_20305 PF00171 Aldehyde dehydrogenase family AMK58_20310 PF00202 Aminotransferase class-III AMK58_20320 PF07237 Protein of unknown function (DUF1428) AMK58_20325 PF06983 3-demethylubiquinone-9 3-methyltransferase AMK58_20330 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMK58_20335 PF00440 Bacterial regulatory proteins, tetR family AMK58_20345 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMK58_20350 PF00202 Aminotransferase class-III AMK58_20355 PF00491 Arginase family AMK58_20360 PF01037 AsnC family AMK58_20360 PF13404 AsnC-type helix-turn-helix domain AMK58_20365 PF13614 AAA domain AMK58_20370 PF02709 N-terminal domain of galactosyltransferase AMK58_20370 PF13733 N-terminal region of glycosyl transferase group 7 AMK58_20375 PF13374 Tetratricopeptide repeat AMK58_20375 PF13424 Tetratricopeptide repeat AMK58_20375 PF13432 Tetratricopeptide repeat AMK58_20375 PF13844 Glycosyl transferase family 41 AMK58_20385 PF00852 Glycosyltransferase family 10 (fucosyltransferase) AMK58_20395 PF03884 Domain of unknown function (DUF329) AMK58_20400 PF10150 Ribonuclease E/G family AMK58_20405 PF02545 Maf-like protein AMK58_20410 PF01176 Translation initiation factor 1A / IF-1 AMK58_20420 PF00072 Response regulator receiver domain AMK58_20420 PF00512 His Kinase A (phospho-acceptor) domain AMK58_20420 PF00672 HAMP domain AMK58_20420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_20420 PF02743 Cache domain AMK58_20425 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMK58_20430 PF06793 AMK58_20430 AMK58_20435 PF00815 Histidinol dehydrogenase AMK58_20440 PF01634 ATP phosphoribosyltransferase AMK58_20450 PF03180 NLPA lipoprotein AMK58_20455 PF00501 AMP-binding enzyme AMK58_20455 PF13193 AMP-binding enzyme C-terminal domain AMK58_20460 PF00005 ABC transporter AMK58_20460 PF09383 NIL domain AMK58_20465 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_20470 PF03180 NLPA lipoprotein AMK58_20475 PF00805 Pentapeptide repeats (8 copies) AMK58_20480 PF00072 Response regulator receiver domain AMK58_20480 PF00512 His Kinase A (phospho-acceptor) domain AMK58_20480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_20485 PF00128 Alpha amylase, catalytic domain AMK58_20485 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMK58_20490 PF07862 AMK58_20490 AMK58_20500 PF13545 Crp-like helix-turn-helix domain AMK58_20505 PF00300 Histidine phosphatase superfamily (branch 1) AMK58_20510 PF00271 Helicase conserved C-terminal domain AMK58_20510 PF12513 Mitochondrial degradasome RNA helicase subunit C terminal AMK58_20515 PF03808 AMK58_20515 AMK58_20520 PF02706 Chain length determinant protein AMK58_20525 PF00331 Glycosyl hydrolase family 10 AMK58_20530 PF13489 Methyltransferase domain AMK58_20535 PF00150 Cellulase (glycosyl hydrolase family 5) AMK58_20535 PF03160 Calx-beta domain AMK58_20535 PF16841 AMK58_20535 AMK58_20540 PF13440 AMK58_20540 AMK58_20545 PF02397 AMK58_20545 AMK58_20545 PF13727 CoA-binding domain AMK58_20550 PF04932 AMK58_20550 AMK58_20555 PF00535 Glycosyl transferase family 2 AMK58_20560 PF00534 Glycosyl transferases group 1 AMK58_20560 PF13439 Glycosyltransferase Family 4 AMK58_20565 PF00534 Glycosyl transferases group 1 AMK58_20565 PF13439 Glycosyltransferase Family 4 AMK58_20570 PF01522 Polysaccharide deacetylase AMK58_20575 PF00550 Phosphopantetheine attachment site AMK58_20580 PF00501 AMP-binding enzyme AMK58_20580 PF13193 AMP-binding enzyme C-terminal domain AMK58_20585 PF00733 Asparagine synthase AMK58_20585 PF13537 Glutamine amidotransferase domain AMK58_20590 PF02540 NAD synthase AMK58_20595 PF13527 Acetyltransferase (GNAT) domain AMK58_20610 PF12802 MarR family AMK58_20615 PF00072 Response regulator receiver domain AMK58_20620 PF00999 Sodium/hydrogen exchanger family AMK58_20620 PF02254 TrkA-N domain AMK58_20630 PF00005 ABC transporter AMK58_20630 PF12857 AMK58_20630 AMK58_20635 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_20640 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_20645 PF13531 Bacterial extracellular solute-binding protein AMK58_20655 PF02082 Transcriptional regulator AMK58_20660 PF00753 Metallo-beta-lactamase superfamily AMK58_20665 PF02566 OsmC-like protein AMK58_20670 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_20675 PF00474 Sodium:solute symporter family AMK58_20680 PF04341 AMK58_20680 AMK58_20685 PF05023 Phytochelatin synthase AMK58_20695 PF13229 Right handed beta helix region AMK58_20695 PF16841 AMK58_20695 AMK58_20700 PF00106 short chain dehydrogenase AMK58_20705 PF05974 Domain of unknown function (DUF892) AMK58_20710 PF13714 Phosphoenolpyruvate phosphomutase AMK58_20715 PF10503 Esterase PHB depolymerase AMK58_20740 PF03741 AMK58_20740 AMK58_20755 PF00593 TonB dependent receptor AMK58_20755 PF07715 TonB-dependent Receptor Plug Domain AMK58_20760 PF01497 Periplasmic binding protein AMK58_20765 PF01032 FecCD transport family AMK58_20770 PF00005 ABC transporter AMK58_20780 PF00122 E1-E2 ATPase AMK58_20780 PF00702 haloacid dehalogenase-like hydrolase AMK58_20810 PF00072 Response regulator receiver domain AMK58_20810 PF00512 His Kinase A (phospho-acceptor) domain AMK58_20810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_20815 PF00072 Response regulator receiver domain AMK58_20815 PF00512 His Kinase A (phospho-acceptor) domain AMK58_20815 PF01627 Hpt domain AMK58_20815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_20820 PF02872 5'-nucleotidase, C-terminal domain AMK58_20825 PF09981 Uncharacterized protein conserved in bacteria (DUF2218) AMK58_20830 PF03551 Transcriptional regulator PadR-like family AMK58_20835 PF01497 Periplasmic binding protein AMK58_20840 PF01032 FecCD transport family AMK58_20845 PF01032 FecCD transport family AMK58_20850 PF00005 ABC transporter AMK58_20855 PF01070 FMN-dependent dehydrogenase AMK58_20860 PF08238 Sel1 repeat AMK58_20865 PF13640 2OG-Fe(II) oxygenase superfamily AMK58_20870 PF00593 TonB dependent receptor AMK58_20870 PF07715 TonB-dependent Receptor Plug Domain AMK58_20875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_20875 PF02885 Glycosyl transferase family, helical bundle domain AMK58_20890 PF01569 PAP2 superfamily AMK58_20895 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMK58_20895 PF05221 S-adenosyl-L-homocysteine hydrolase AMK58_20905 PF01430 Hsp33 protein AMK58_20910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMK58_20910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMK58_20915 PF00202 Aminotransferase class-III AMK58_20920 PF01061 AMK58_20920 AMK58_20925 PF02631 RecX family AMK58_20935 PF00830 Ribosomal L28 family AMK58_20940 PF09361 AMK58_20940 AMK58_20945 PF03308 ArgK protein AMK58_20955 PF00005 ABC transporter AMK58_20955 PF00664 ABC transporter transmembrane region AMK58_20965 PF08239 Bacterial SH3 domain AMK58_20970 PF05437 AMK58_20970 AMK58_20975 PF03591 AMK58_20975 AMK58_20980 PF03006 AMK58_20980 AMK58_20985 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_20985 PF02861 Clp amino terminal domain AMK58_20985 PF07724 AAA domain (Cdc48 subfamily) AMK58_20985 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_20990 PF00293 NUDIX domain AMK58_20995 PF03473 MOSC domain AMK58_20995 PF03476 MOSC N-terminal beta barrel domain AMK58_21000 PF13763 AMK58_21000 AMK58_21005 PF13847 Methyltransferase domain AMK58_21010 PF04480 Protein of unknown function (DUF559) AMK58_21015 PF00472 RF-1 domain AMK58_21015 PF03462 PCRF domain AMK58_21020 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMK58_21020 PF01488 Shikimate / quinate 5-dehydrogenase AMK58_21020 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMK58_21025 PF04551 GcpE protein AMK58_21030 PF13413 Helix-turn-helix domain AMK58_21030 PF13464 AMK58_21030 AMK58_21035 PF00391 PEP-utilising enzyme, mobile domain AMK58_21035 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_21035 PF05524 PEP-utilising enzyme, N-terminal AMK58_21035 PF13185 GAF domain AMK58_21040 PF03060 Nitronate monooxygenase AMK58_21045 PF00696 Amino acid kinase family AMK58_21045 PF01842 ACT domain AMK58_21045 PF13840 ACT domain AMK58_21050 PF08241 Methyltransferase domain AMK58_21055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMK58_21060 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMK58_21060 PF16321 AMK58_21060 AMK58_21065 PF00309 AMK58_21065 AMK58_21065 PF04552 Sigma-54, DNA binding domain AMK58_21065 PF04963 Sigma-54 factor, core binding domain AMK58_21070 PF00005 ABC transporter AMK58_21070 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_21075 PF03968 OstA-like protein AMK58_21080 PF06835 Lipopolysaccharide-assembly, LptC-related AMK58_21085 PF00571 CBS domain AMK58_21085 PF01380 SIS domain AMK58_21090 PF01612 3'-5' exonuclease AMK58_21100 PF01370 NAD dependent epimerase/dehydratase family AMK58_21105 PF07690 Major Facilitator Superfamily AMK58_21110 PF02673 AMK58_21110 AMK58_21115 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_21115 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMK58_21120 PF00310 Glutamine amidotransferases class-II AMK58_21120 PF01493 GXGXG motif AMK58_21120 PF01645 Conserved region in glutamate synthase AMK58_21120 PF04898 Glutamate synthase central domain AMK58_21125 PF13508 Acetyltransferase (GNAT) domain AMK58_21130 PF00043 Glutathione S-transferase, C-terminal domain AMK58_21130 PF13417 Glutathione S-transferase, N-terminal domain AMK58_21135 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_21145 PF02417 AMK58_21145 AMK58_21150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_21155 PF00072 Response regulator receiver domain AMK58_21155 PF00486 Transcriptional regulatory protein, C terminal AMK58_21160 PF03413 Peptidase propeptide and YPEB domain AMK58_21170 PF09086 Domain of unknown function (DUF1924) AMK58_21175 PF09626 Dihaem cytochrome c AMK58_21185 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_21190 PF09084 NMT1/THI5 like AMK58_21195 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_21200 PF00005 ABC transporter AMK58_21205 PF05893 Acyl-CoA reductase (LuxC) AMK58_21210 PF04443 AMK58_21210 AMK58_21215 PF04724 AMK58_21215 AMK58_21220 PF01546 Peptidase family M20/M25/M40 AMK58_21220 PF07687 Peptidase dimerisation domain AMK58_21225 PF01292 Prokaryotic cytochrome b561 AMK58_21230 PF13247 4Fe-4S dicluster domain AMK58_21235 PF00384 Molybdopterin oxidoreductase AMK58_21235 PF01568 Molydopterin dinucleotide binding domain AMK58_21235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_21245 PF02613 Nitrate reductase delta subunit AMK58_21250 PF11748 AMK58_21250 AMK58_21255 PF11749 AMK58_21255 AMK58_21260 PF16917 AMK58_21260 AMK58_21270 PF02445 Quinolinate synthetase A protein AMK58_21275 PF00890 FAD binding domain AMK58_21275 PF02910 Fumarate reductase flavoprotein C-term AMK58_21280 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMK58_21280 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMK58_21285 PF03275 UDP-galactopyranose mutase AMK58_21285 PF13450 NAD(P)-binding Rossmann-like domain AMK58_21290 PF00478 IMP dehydrogenase / GMP reductase domain AMK58_21295 PF01546 Peptidase family M20/M25/M40 AMK58_21295 PF07687 Peptidase dimerisation domain AMK58_21300 PF01546 Peptidase family M20/M25/M40 AMK58_21300 PF07687 Peptidase dimerisation domain AMK58_21305 PF09349 OHCU decarboxylase AMK58_21310 PF00576 HIUase/Transthyretin family AMK58_21315 PF06181 AMK58_21315 AMK58_21320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_21320 PF03466 LysR substrate binding domain AMK58_21325 PF00356 Bacterial regulatory proteins, lacI family AMK58_21325 PF13377 Periplasmic binding protein-like domain AMK58_21330 PF01541 GIY-YIG catalytic domain AMK58_21330 PF02151 UvrB/uvrC motif AMK58_21330 PF08459 UvrC Helix-hairpin-helix N-terminal AMK58_21330 PF14520 Helix-hairpin-helix domain AMK58_21350 PF05951 AMK58_21350 AMK58_21365 PF04055 Radical SAM superfamily AMK58_21365 PF08497 AMK58_21365 AMK58_21365 PF11842 AMK58_21365 AMK58_21375 PF00877 NlpC/P60 family AMK58_21380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_21385 PF00384 Molybdopterin oxidoreductase AMK58_21385 PF01568 Molydopterin dinucleotide binding domain AMK58_21385 PF04324 BFD-like [2Fe-2S] binding domain AMK58_21385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_21390 PF00355 Rieske [2Fe-2S] domain AMK58_21395 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMK58_21395 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMK58_21395 PF04324 BFD-like [2Fe-2S] binding domain AMK58_21395 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_21400 PF13379 NMT1-like family AMK58_21405 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_21410 PF00005 ABC transporter AMK58_21415 PF03861 ANTAR domain AMK58_21420 PF03992 Antibiotic biosynthesis monooxygenase AMK58_21430 PF01042 Endoribonuclease L-PSP AMK58_21435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_21435 PF03466 LysR substrate binding domain AMK58_21440 PF06912 AMK58_21440 AMK58_21445 PF03167 Uracil DNA glycosylase superfamily AMK58_21450 PF02195 ParB-like nuclease domain AMK58_21455 PF13614 AAA domain AMK58_21460 PF04796 AMK58_21460 AMK58_21465 PF13365 Trypsin-like peptidase domain AMK58_21470 PF13476 AAA domain AMK58_21470 PF13558 Putative exonuclease SbcCD, C subunit AMK58_21475 PF00149 Calcineurin-like phosphoesterase AMK58_21475 PF12320 Type 5 capsule protein repressor C-terminal domain AMK58_21515 PF01361 Tautomerase enzyme AMK58_21520 PF00596 Class II Aldolase and Adducin N-terminal domain AMK58_21525 PF00072 Response regulator receiver domain AMK58_21525 PF00158 Sigma-54 interaction domain AMK58_21525 PF02954 Bacterial regulatory protein, Fis family AMK58_21530 PF00512 His Kinase A (phospho-acceptor) domain AMK58_21530 PF00672 HAMP domain AMK58_21530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_21530 PF17202 AMK58_21530 AMK58_21535 PF04216 Protein involved in formate dehydrogenase formation AMK58_21540 PF00384 Molybdopterin oxidoreductase AMK58_21540 PF01568 Molydopterin dinucleotide binding domain AMK58_21545 PF09163 Formate dehydrogenase N, transmembrane AMK58_21545 PF13247 4Fe-4S dicluster domain AMK58_21550 PF01292 Prokaryotic cytochrome b561 AMK58_21555 PF02634 FdhD/NarQ family AMK58_21560 PF00072 Response regulator receiver domain AMK58_21560 PF00512 His Kinase A (phospho-acceptor) domain AMK58_21560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_21565 PF00072 Response regulator receiver domain AMK58_21570 PF00072 Response regulator receiver domain AMK58_21570 PF01339 CheB methylesterase AMK58_21575 PF00072 Response regulator receiver domain AMK58_21575 PF01584 CheW-like domain AMK58_21575 PF01627 Hpt domain AMK58_21575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_21580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_21580 PF00672 HAMP domain AMK58_21585 PF01584 CheW-like domain AMK58_21590 PF01739 CheR methyltransferase, SAM binding domain AMK58_21595 PF01584 CheW-like domain AMK58_21600 PF02261 Aspartate decarboxylase AMK58_21615 PF03372 Endonuclease/Exonuclease/phosphatase family AMK58_21620 PF08241 Methyltransferase domain AMK58_21625 PF03975 CheD chemotactic sensory transduction AMK58_21630 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AMK58_21655 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMK58_21685 PF07277 AMK58_21685 AMK58_21700 PF02386 Cation transport protein AMK58_21705 PF03706 AMK58_21705 AMK58_21715 PF02028 BCCT family transporter AMK58_21720 PF00990 GGDEF domain AMK58_21720 PF08448 PAS fold AMK58_21730 PF00300 Histidine phosphatase superfamily (branch 1) AMK58_21735 PF01256 Carbohydrate kinase AMK58_21745 PF07690 Major Facilitator Superfamily AMK58_21750 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMK58_21750 PF06481 COX Aromatic Rich Motif AMK58_21755 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_21760 PF00510 Cytochrome c oxidase subunit III AMK58_21765 PF03626 AMK58_21765 AMK58_21770 PF02104 AMK58_21770 AMK58_21775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_21780 PF00072 Response regulator receiver domain AMK58_21780 PF02954 Bacterial regulatory protein, Fis family AMK58_21790 PF00216 Bacterial DNA-binding protein AMK58_21795 PF03264 NapC/NirT cytochrome c family, N-terminal region AMK58_21800 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AMK58_21805 PF00384 Molybdopterin oxidoreductase AMK58_21805 PF01568 Molydopterin dinucleotide binding domain AMK58_21805 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_21810 PF03927 NapD protein AMK58_21815 PF00037 4Fe-4S binding domain AMK58_21815 PF12838 4Fe-4S dicluster domain AMK58_21820 PF06796 AMK58_21820 AMK58_21830 PF07690 Major Facilitator Superfamily AMK58_21840 PF01027 Inhibitor of apoptosis-promoting Bax1 AMK58_21850 PF04542 Sigma-70 region 2 AMK58_21850 PF08281 Sigma-70, region 4 AMK58_21855 PF00216 Bacterial DNA-binding protein AMK58_21865 PF00072 Response regulator receiver domain AMK58_21870 PF00027 Cyclic nucleotide-binding domain AMK58_21870 PF13545 Crp-like helix-turn-helix domain AMK58_21875 PF07005 Protein of unknown function, DUF1537 AMK58_21875 PF17042 AMK58_21875 AMK58_21880 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AMK58_21880 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AMK58_21885 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMK58_21890 PF04290 AMK58_21890 AMK58_21890 PF06808 AMK58_21890 AMK58_21895 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_21900 PF00356 Bacterial regulatory proteins, lacI family AMK58_21900 PF13407 Periplasmic binding protein domain AMK58_21905 PF00892 EamA-like transporter family AMK58_21910 PF05853 Prokaryotic protein of unknown function (DUF849) AMK58_21915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_21915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_21920 PF00850 Histone deacetylase domain AMK58_21925 PF01546 Peptidase family M20/M25/M40 AMK58_21930 PF02558 Ketopantoate reductase PanE/ApbA AMK58_21930 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMK58_21935 PF00005 ABC transporter AMK58_21935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_21940 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_21940 PF12911 AMK58_21940 AMK58_21945 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_21950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_21955 PF01546 Peptidase family M20/M25/M40 AMK58_21955 PF07687 Peptidase dimerisation domain AMK58_21960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_21960 PF03466 LysR substrate binding domain AMK58_21965 PF13229 Right handed beta helix region AMK58_21965 PF16841 AMK58_21965 AMK58_21975 PF00534 Glycosyl transferases group 1 AMK58_21980 PF04932 AMK58_21980 AMK58_21985 PF00534 Glycosyl transferases group 1 AMK58_21985 PF13579 Glycosyl transferase 4-like domain AMK58_21995 PF01370 NAD dependent epimerase/dehydratase family AMK58_21995 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMK58_21995 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMK58_22000 PF02706 Chain length determinant protein AMK58_22000 PF13614 AAA domain AMK58_22005 PF16363 AMK58_22005 AMK58_22010 PF02397 AMK58_22010 AMK58_22010 PF13727 CoA-binding domain AMK58_22015 PF01370 NAD dependent epimerase/dehydratase family AMK58_22020 PF03808 AMK58_22020 AMK58_22030 PF16363 AMK58_22030 AMK58_22035 PF01370 NAD dependent epimerase/dehydratase family AMK58_22050 PF00196 Bacterial regulatory proteins, luxR family AMK58_22055 PF00196 Bacterial regulatory proteins, luxR family AMK58_22060 PF00196 Bacterial regulatory proteins, luxR family AMK58_22065 PF13229 Right handed beta helix region AMK58_22070 PF00723 Glycosyl hydrolases family 15 AMK58_22075 PF04972 BON domain AMK58_22080 PF07521 RNA-metabolising metallo-beta-lactamase AMK58_22080 PF12706 Beta-lactamase superfamily domain AMK58_22095 PF13649 Methyltransferase domain AMK58_22110 PF00072 Response regulator receiver domain AMK58_22110 PF00512 His Kinase A (phospho-acceptor) domain AMK58_22110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_22115 PF01425 Amidase AMK58_22120 PF07690 Major Facilitator Superfamily AMK58_22125 PF00576 HIUase/Transthyretin family AMK58_22130 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_22135 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_22140 PF13343 Bacterial extracellular solute-binding protein AMK58_22145 PF00005 ABC transporter AMK58_22145 PF08402 TOBE domain AMK58_22155 PF00392 Bacterial regulatory proteins, gntR family AMK58_22155 PF07729 FCD domain AMK58_22160 PF13379 NMT1-like family AMK58_22165 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_22170 PF00005 ABC transporter AMK58_22175 PF01979 Amidohydrolase family AMK58_22180 PF01177 Asp/Glu/Hydantoin racemase AMK58_22185 PF01979 Amidohydrolase family AMK58_22190 PF01425 Amidase AMK58_22200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_22200 PF00672 HAMP domain AMK58_22200 PF12729 AMK58_22200 AMK58_22205 PF00501 AMP-binding enzyme AMK58_22205 PF13193 AMP-binding enzyme C-terminal domain AMK58_22210 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_22215 PF00005 ABC transporter AMK58_22215 PF08402 TOBE domain AMK58_22220 PF13416 Bacterial extracellular solute-binding protein AMK58_22225 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_22230 PF01614 Bacterial transcriptional regulator AMK58_22230 PF09339 IclR helix-turn-helix domain AMK58_22270 PF03160 Calx-beta domain AMK58_22270 PF12245 Bacterial Ig-like domain (group 3) AMK58_22270 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AMK58_22275 PF01872 RibD C-terminal domain AMK58_22280 PF08042 AMK58_22280 AMK58_22290 PF08770 Sulphur oxidation protein SoxZ AMK58_22290 PF13501 Sulfur oxidation protein SoxY AMK58_22295 PF00753 Metallo-beta-lactamase superfamily AMK58_22305 PF02655 ATP-grasp domain AMK58_22310 PF00977 Histidine biosynthesis protein AMK58_22315 PF08714 Formaldehyde-activating enzyme (Fae) AMK58_22320 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AMK58_22325 PF08443 RimK-like ATP-grasp domain AMK58_22330 PF02289 Cyclohydrolase (MCH) AMK58_22340 PF05368 NmrA-like family AMK58_22340 PF09176 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal AMK58_22345 PF00288 GHMP kinases N terminal domain AMK58_22345 PF08544 GHMP kinases C terminal AMK58_22350 PF01329 Pterin 4 alpha carbinolamine dehydratase AMK58_22360 PF07969 Amidohydrolase family AMK58_22365 PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase AMK58_22365 PF02741 FTR, proximal lobe AMK58_22370 PF01493 GXGXG motif AMK58_22375 PF13458 Periplasmic binding protein AMK58_22385 PF00005 ABC transporter AMK58_22390 PF01061 AMK58_22390 AMK58_22405 PF04476 AMK58_22405 AMK58_22410 PF04289 Protein of unknown function (DUF447) AMK58_22420 PF00696 Amino acid kinase family AMK58_22425 PF02152 Dihydroneopterin aldolase AMK58_22430 PF11684 AMK58_22430 AMK58_22440 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_22445 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_22450 PF01011 PQQ enzyme repeat AMK58_22450 PF13360 PQQ-like domain AMK58_22465 PF03167 Uracil DNA glycosylase superfamily AMK58_22465 PF13566 AMK58_22465 AMK58_22475 PF00144 Beta-lactamase AMK58_22485 PF13279 Thioesterase-like superfamily AMK58_22490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_22490 PF03466 LysR substrate binding domain AMK58_22495 PF02515 CoA-transferase family III AMK58_22505 PF01796 AMK58_22505 AMK58_22505 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) AMK58_22510 PF01575 MaoC like domain AMK58_22515 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_22520 PF13531 Bacterial extracellular solute-binding protein AMK58_22525 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_22530 PF00005 ABC transporter AMK58_22530 PF08402 TOBE domain AMK58_22535 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_22540 PF13428 Tetratricopeptide repeat AMK58_22540 PF13432 Tetratricopeptide repeat AMK58_22540 PF13469 Sulfotransferase family AMK58_22545 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMK58_22550 PF06776 Invasion associated locus B (IalB) protein AMK58_22555 PF03797 Autotransporter beta-domain AMK58_22560 PF02566 OsmC-like protein AMK58_22565 PF00550 Phosphopantetheine attachment site AMK58_22570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_22570 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMK58_22580 PF08893 AMK58_22580 AMK58_22590 PF12146 Putative lysophospholipase AMK58_22595 PF07484 Phage Tail Collar Domain AMK58_22605 PF07484 Phage Tail Collar Domain AMK58_22610 PF13673 Acetyltransferase (GNAT) domain AMK58_22615 PF14252 AMK58_22615 AMK58_22620 PF02321 Outer membrane efflux protein AMK58_22625 PF13437 HlyD family secretion protein AMK58_22625 PF13533 Biotin-lipoyl like AMK58_22630 PF13437 HlyD family secretion protein AMK58_22635 PF16576 AMK58_22635 AMK58_22640 PF16998 AMK58_22640 AMK58_22645 PF00924 Mechanosensitive ion channel AMK58_22655 PF12570 AMK58_22655 AMK58_22660 PF03641 Possible lysine decarboxylase AMK58_22665 PF00072 Response regulator receiver domain AMK58_22665 PF00512 His Kinase A (phospho-acceptor) domain AMK58_22665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_22675 PF01152 Bacterial-like globin AMK58_22680 PF02589 Uncharacterised ACR, YkgG family COG1556 AMK58_22685 PF02589 Uncharacterised ACR, YkgG family COG1556 AMK58_22685 PF11870 AMK58_22685 AMK58_22685 PF13183 4Fe-4S dicluster domain AMK58_22690 PF02754 AMK58_22690 AMK58_22695 PF01565 FAD binding domain AMK58_22695 PF02754 AMK58_22695 AMK58_22695 PF02913 FAD linked oxidases, C-terminal domain AMK58_22695 PF13183 4Fe-4S dicluster domain AMK58_22700 PF02652 AMK58_22700 AMK58_22705 PF00392 Bacterial regulatory proteins, gntR family AMK58_22705 PF07729 FCD domain AMK58_22710 PF09678 AMK58_22710 AMK58_22715 PF13489 Methyltransferase domain AMK58_22720 PF00004 ATPase family associated with various cellular activities (AAA) AMK58_22720 PF02861 Clp amino terminal domain AMK58_22720 PF07724 AAA domain (Cdc48 subfamily) AMK58_22720 PF10431 C-terminal, D2-small domain, of ClpB protein AMK58_22725 PF01614 Bacterial transcriptional regulator AMK58_22725 PF09339 IclR helix-turn-helix domain AMK58_22730 PF05035 2-keto-3-deoxy-galactonokinase AMK58_22735 PF01081 KDPG and KHG aldolase AMK58_22740 PF03401 Tripartite tricarboxylate transporter family receptor AMK58_22745 PF07331 AMK58_22745 AMK58_22750 PF01970 AMK58_22750 AMK58_22755 PF08450 SMP-30/Gluconolaconase/LRE-like region AMK58_22760 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_22770 PF00072 Response regulator receiver domain AMK58_22770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_22775 PF00072 Response regulator receiver domain AMK58_22780 PF00072 Response regulator receiver domain AMK58_22780 PF00512 His Kinase A (phospho-acceptor) domain AMK58_22780 PF01627 Hpt domain AMK58_22780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_22785 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_22790 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_22795 PF12802 MarR family AMK58_22800 PF07166 Protein of unknown function (DUF1398) AMK58_22810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_22810 PF00672 HAMP domain AMK58_22815 PF10087 AMK58_22815 AMK58_22820 PF01272 Transcription elongation factor, GreA/GreB, C-term AMK58_22825 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMK58_22825 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMK58_22830 PF00512 His Kinase A (phospho-acceptor) domain AMK58_22830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_22830 PF05231 AMK58_22830 AMK58_22835 PF00072 Response regulator receiver domain AMK58_22835 PF00196 Bacterial regulatory proteins, luxR family AMK58_22840 PF03544 Gram-negative bacterial TonB protein C-terminal AMK58_22845 PF02472 Biopolymer transport protein ExbD/TolR AMK58_22850 PF01618 AMK58_22850 AMK58_22865 PF09585 Conserved hypothetical protein (Lin0512_fam) AMK58_22870 PF13583 Metallo-peptidase family M12B Reprolysin-like AMK58_22875 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AMK58_22885 PF06580 AMK58_22885 AMK58_22885 PF07694 5TMR of 5TMR-LYT AMK58_22890 PF00072 Response regulator receiver domain AMK58_22890 PF04397 LytTr DNA-binding domain AMK58_22895 PF02554 AMK58_22895 AMK58_22895 PF13722 AMK58_22895 AMK58_22900 PF07690 Major Facilitator Superfamily AMK58_22905 PF05343 M42 glutamyl aminopeptidase AMK58_22910 PF00583 Acetyltransferase (GNAT) family AMK58_22910 PF08443 RimK-like ATP-grasp domain AMK58_22915 PF00733 Asparagine synthase AMK58_22915 PF13537 Glutamine amidotransferase domain AMK58_22920 PF00155 Aminotransferase class I and II AMK58_22920 PF00392 Bacterial regulatory proteins, gntR family AMK58_22925 PF12900 Pyridoxamine 5'-phosphate oxidase AMK58_22930 PF13430 AMK58_22930 AMK58_22940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_22940 PF03466 LysR substrate binding domain AMK58_22945 PF00202 Aminotransferase class-III AMK58_22950 PF00171 Aldehyde dehydrogenase family AMK58_22955 PF00392 Bacterial regulatory proteins, gntR family AMK58_22955 PF07729 FCD domain AMK58_22960 PF00571 CBS domain AMK58_22960 PF04972 BON domain AMK58_22970 PF03741 AMK58_22970 AMK58_22975 PF01970 AMK58_22975 AMK58_22980 PF07331 AMK58_22980 AMK58_22985 PF03401 Tripartite tricarboxylate transporter family receptor AMK58_22990 PF13229 Right handed beta helix region AMK58_22990 PF16841 AMK58_22990 AMK58_23005 PF04230 AMK58_23005 AMK58_23015 PF00534 Glycosyl transferases group 1 AMK58_23015 PF13439 Glycosyltransferase Family 4 AMK58_23025 PF00534 Glycosyl transferases group 1 AMK58_23025 PF13439 Glycosyltransferase Family 4 AMK58_23030 PF08241 Methyltransferase domain AMK58_23035 PF13641 Glycosyltransferase like family 2 AMK58_23040 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_23050 PF13437 HlyD family secretion protein AMK58_23050 PF13533 Biotin-lipoyl like AMK58_23055 PF00005 ABC transporter AMK58_23055 PF00664 ABC transporter transmembrane region AMK58_23060 PF01370 NAD dependent epimerase/dehydratase family AMK58_23065 PF13463 Winged helix DNA-binding domain AMK58_23070 PF10098 AMK58_23070 AMK58_23075 PF00440 Bacterial regulatory proteins, tetR family AMK58_23080 PF00501 AMP-binding enzyme AMK58_23080 PF13193 AMP-binding enzyme C-terminal domain AMK58_23085 PF00392 Bacterial regulatory proteins, gntR family AMK58_23085 PF07729 FCD domain AMK58_23090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_23090 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_23090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_23095 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_23095 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMK58_23100 PF00756 Putative esterase AMK58_23100 PF11806 Domain of unknown function (DUF3327) AMK58_23105 PF00501 AMP-binding enzyme AMK58_23105 PF00550 Phosphopantetheine attachment site AMK58_23105 PF00668 Condensation domain AMK58_23105 PF00975 Thioesterase domain AMK58_23105 PF13193 AMP-binding enzyme C-terminal domain AMK58_23110 PF03621 MbtH-like protein AMK58_23115 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_23120 PF00550 Phosphopantetheine attachment site AMK58_23120 PF00857 Isochorismatase family AMK58_23125 PF00501 AMP-binding enzyme AMK58_23125 PF13193 AMP-binding enzyme C-terminal domain AMK58_23130 PF00425 chorismate binding enzyme AMK58_23135 PF00873 AcrB/AcrD/AcrF family AMK58_23140 PF16576 AMK58_23140 AMK58_23145 PF05977 Transmembrane secretion effector AMK58_23150 PF00593 TonB dependent receptor AMK58_23150 PF07715 TonB-dependent Receptor Plug Domain AMK58_23155 PF03929 AMK58_23155 AMK58_23170 PF00072 Response regulator receiver domain AMK58_23175 PF00072 Response regulator receiver domain AMK58_23175 PF00512 His Kinase A (phospho-acceptor) domain AMK58_23175 PF00672 HAMP domain AMK58_23175 PF01627 Hpt domain AMK58_23175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_23185 PF00501 AMP-binding enzyme AMK58_23185 PF09339 IclR helix-turn-helix domain AMK58_23190 PF00005 ABC transporter AMK58_23190 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_23195 PF00501 AMP-binding enzyme AMK58_23200 PF02653 AMK58_23200 AMK58_23205 PF02653 AMK58_23205 AMK58_23210 PF13458 Periplasmic binding protein AMK58_23215 PF00005 ABC transporter AMK58_23220 PF00501 AMP-binding enzyme AMK58_23220 PF14535 AMP-binding enzyme C-terminal domain AMK58_23225 PF00171 Aldehyde dehydrogenase family AMK58_23230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_23230 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_23230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_23235 PF00108 Thiolase, N-terminal domain AMK58_23235 PF02803 Thiolase, C-terminal domain AMK58_23240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_23240 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_23240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_23245 PF01039 Carboxyl transferase domain AMK58_23250 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_23255 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMK58_23255 PF00364 Biotin-requiring enzyme AMK58_23255 PF02785 Biotin carboxylase C-terminal domain AMK58_23255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMK58_23260 PF00682 HMGL-like AMK58_23265 PF00582 Universal stress protein family AMK58_23270 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AMK58_23270 PF13450 NAD(P)-binding Rossmann-like domain AMK58_23275 PF00106 short chain dehydrogenase AMK58_23280 PF05239 PRC-barrel domain AMK58_23285 PF00756 Putative esterase AMK58_23290 PF01596 O-methyltransferase AMK58_23295 PF01522 Polysaccharide deacetylase AMK58_23300 PF05443 ROS/MUCR transcriptional regulator protein AMK58_23305 PF00232 Glycosyl hydrolase family 1 AMK58_23310 PF00232 Glycosyl hydrolase family 1 AMK58_23315 PF13432 Tetratricopeptide repeat AMK58_23320 PF06472 AMK58_23320 AMK58_23330 PF00535 Glycosyl transferase family 2 AMK58_23340 PF07690 Major Facilitator Superfamily AMK58_23345 PF16576 AMK58_23345 AMK58_23350 PF02627 Carboxymuconolactone decarboxylase family AMK58_23355 PF13460 NADH(P)-binding AMK58_23360 PF00486 Transcriptional regulatory protein, C terminal AMK58_23400 PF01551 Peptidase family M23 AMK58_23405 PF13480 Acetyltransferase (GNAT) domain AMK58_23410 PF01618 AMK58_23410 AMK58_23415 PF00821 Phosphoenolpyruvate carboxykinase AMK58_23415 PF17297 AMK58_23415 AMK58_23420 PF01243 Pyridoxamine 5'-phosphate oxidase AMK58_23420 PF10615 Protein of unknown function (DUF2470) AMK58_23425 PF00072 Response regulator receiver domain AMK58_23425 PF00486 Transcriptional regulatory protein, C terminal AMK58_23430 PF00512 His Kinase A (phospho-acceptor) domain AMK58_23430 PF00672 HAMP domain AMK58_23430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23430 PF13755 AMK58_23430 AMK58_23430 PF13756 AMK58_23430 AMK58_23440 PF07475 HPr Serine kinase C-terminal domain AMK58_23445 PF03668 AMK58_23445 AMK58_23450 PF03610 PTS system fructose IIA component AMK58_23455 PF00381 PTS HPr component phosphorylation site AMK58_23460 PF00391 PEP-utilising enzyme, mobile domain AMK58_23460 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_23460 PF05524 PEP-utilising enzyme, N-terminal AMK58_23465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_23465 PF03466 LysR substrate binding domain AMK58_23470 PF03972 MmgE/PrpD family AMK58_23475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_23480 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23485 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23490 PF00005 ABC transporter AMK58_23490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_23495 PF01042 Endoribonuclease L-PSP AMK58_23500 PF00491 Arginase family AMK58_23505 PF01546 Peptidase family M20/M25/M40 AMK58_23505 PF07687 Peptidase dimerisation domain AMK58_23510 PF00300 Histidine phosphatase superfamily (branch 1) AMK58_23515 PF13419 Haloacid dehalogenase-like hydrolase AMK58_23520 PF00005 ABC transporter AMK58_23520 PF08402 TOBE domain AMK58_23525 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23530 PF13343 Bacterial extracellular solute-binding protein AMK58_23535 PF02080 TrkA-C domain AMK58_23535 PF06826 AMK58_23535 AMK58_23540 PF00155 Aminotransferase class I and II AMK58_23545 PF00072 Response regulator receiver domain AMK58_23545 PF00158 Sigma-54 interaction domain AMK58_23545 PF02954 Bacterial regulatory protein, Fis family AMK58_23550 PF00512 His Kinase A (phospho-acceptor) domain AMK58_23550 PF00672 HAMP domain AMK58_23550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23550 PF08448 PAS fold AMK58_23555 PF13343 Bacterial extracellular solute-binding protein AMK58_23565 PF00232 Glycosyl hydrolase family 1 AMK58_23570 PF02056 Family 4 glycosyl hydrolase AMK58_23570 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMK58_23575 PF11154 AMK58_23575 AMK58_23585 PF01546 Peptidase family M20/M25/M40 AMK58_23585 PF07687 Peptidase dimerisation domain AMK58_23590 PF04509 CheC-like family AMK58_23590 PF13690 Chemotaxis phosphatase CheX AMK58_23595 PF00989 PAS fold AMK58_23595 PF07568 AMK58_23595 AMK58_23595 PF08448 PAS fold AMK58_23600 PF00072 Response regulator receiver domain AMK58_23610 PF01584 CheW-like domain AMK58_23610 PF01627 Hpt domain AMK58_23610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23610 PF02895 Signal transducing histidine kinase, homodimeric domain AMK58_23615 PF00072 Response regulator receiver domain AMK58_23620 PF01739 CheR methyltransferase, SAM binding domain AMK58_23620 PF03705 CheR methyltransferase, all-alpha domain AMK58_23625 PF13646 HEAT repeats AMK58_23630 PF00072 Response regulator receiver domain AMK58_23630 PF01339 CheB methylesterase AMK58_23635 PF01584 CheW-like domain AMK58_23640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_23645 PF04509 CheC-like family AMK58_23650 PF00072 Response regulator receiver domain AMK58_23655 PF01914 AMK58_23655 AMK58_23660 PF01263 Aldose 1-epimerase AMK58_23665 PF00285 Citrate synthase AMK58_23675 PF13521 AAA domain AMK58_23680 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_23685 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMK58_23685 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMK58_23695 PF09928 AMK58_23695 AMK58_23700 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23705 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23710 PF00005 ABC transporter AMK58_23715 PF00005 ABC transporter AMK58_23720 PF01266 FAD dependent oxidoreductase AMK58_23720 PF16901 AMK58_23720 AMK58_23725 PF09335 AMK58_23725 AMK58_23730 PF11450 AMK58_23730 AMK58_23735 PF00501 AMP-binding enzyme AMK58_23735 PF00550 Phosphopantetheine attachment site AMK58_23735 PF00668 Condensation domain AMK58_23735 PF07993 Male sterility protein AMK58_23735 PF13193 AMP-binding enzyme C-terminal domain AMK58_23740 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMK58_23745 PF00005 ABC transporter AMK58_23750 PF00005 ABC transporter AMK58_23755 PF00975 Thioesterase domain AMK58_23760 PF05128 AMK58_23760 AMK58_23770 PF01145 SPFH domain / Band 7 family AMK58_23775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_23775 PF07238 PilZ domain AMK58_23775 PF11563 Protoglobin AMK58_23775 PF13682 Chemoreceptor zinc-binding domain AMK58_23780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_23780 PF07238 PilZ domain AMK58_23780 PF17202 AMK58_23780 AMK58_23785 PF00034 Cytochrome c AMK58_23790 PF00805 Pentapeptide repeats (8 copies) AMK58_23790 PF13599 Pentapeptide repeats (9 copies) AMK58_23795 PF00072 Response regulator receiver domain AMK58_23800 PF00072 Response regulator receiver domain AMK58_23800 PF00512 His Kinase A (phospho-acceptor) domain AMK58_23800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23800 PF13185 GAF domain AMK58_23805 PF00072 Response regulator receiver domain AMK58_23805 PF00512 His Kinase A (phospho-acceptor) domain AMK58_23805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_23805 PF08447 PAS fold AMK58_23810 PF05433 AMK58_23810 AMK58_23810 PF16998 AMK58_23810 AMK58_23815 PF11306 Protein of unknown function (DUF3108) AMK58_23820 PF14542 GCN5-related N-acetyl-transferase AMK58_23825 PF00128 Alpha amylase, catalytic domain AMK58_23825 PF11941 Domain of unknown function (DUF3459) AMK58_23830 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_23835 PF00892 EamA-like transporter family AMK58_23845 PF06945 AMK58_23845 AMK58_23855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_23855 PF00672 HAMP domain AMK58_23855 PF17202 AMK58_23855 AMK58_23860 PF02659 AMK58_23860 AMK58_23875 PF12697 Alpha/beta hydrolase family AMK58_23885 PF04391 AMK58_23885 AMK58_23890 PF13578 Methyltransferase domain AMK58_23895 PF00501 AMP-binding enzyme AMK58_23895 PF01553 Acyltransferase AMK58_23895 PF07690 Major Facilitator Superfamily AMK58_23900 PF00440 Bacterial regulatory proteins, tetR family AMK58_23905 PF01546 Peptidase family M20/M25/M40 AMK58_23905 PF07687 Peptidase dimerisation domain AMK58_23910 PF01266 FAD dependent oxidoreductase AMK58_23915 PF14196 AMK58_23915 AMK58_23920 PF13458 Periplasmic binding protein AMK58_23925 PF02653 AMK58_23925 AMK58_23930 PF02653 AMK58_23930 AMK58_23935 PF00005 ABC transporter AMK58_23935 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_23940 PF00005 ABC transporter AMK58_23945 PF14196 AMK58_23945 AMK58_23950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_23950 PF07238 PilZ domain AMK58_23950 PF08447 PAS fold AMK58_23955 PF03358 NADPH-dependent FMN reductase AMK58_23960 PF02652 AMK58_23960 AMK58_23965 PF00455 AMK58_23965 AMK58_23965 PF08220 DeoR-like helix-turn-helix domain AMK58_23970 PF00005 ABC transporter AMK58_23970 PF08402 TOBE domain AMK58_23975 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23980 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_23985 PF13416 Bacterial extracellular solute-binding protein AMK58_23990 PF08241 Methyltransferase domain AMK58_23995 PF13614 AAA domain AMK58_24000 PF02195 ParB-like nuclease domain AMK58_24020 PF00106 short chain dehydrogenase AMK58_24025 PF01757 AMK58_24025 AMK58_24030 PF13480 Acetyltransferase (GNAT) domain AMK58_24035 PF01380 SIS domain AMK58_24040 PF01594 AMK58_24040 AMK58_24045 PF03200 Mannosyl oligosaccharide glucosidase AMK58_24050 PF00873 AcrB/AcrD/AcrF family AMK58_24055 PF16576 AMK58_24055 AMK58_24060 PF16576 AMK58_24060 AMK58_24065 PF00871 Acetokinase family AMK58_24070 PF01515 Phosphate acetyl/butaryl transferase AMK58_24080 PF11339 AMK58_24080 AMK58_24090 PF13436 AMK58_24090 AMK58_24095 PF01909 Nucleotidyltransferase domain AMK58_24095 PF13427 AMK58_24095 AMK58_24105 PF09865 AMK58_24105 AMK58_24125 PF03976 Polyphosphate kinase 2 (PPK2) AMK58_24135 PF13432 Tetratricopeptide repeat AMK58_24140 PF13202 EF hand AMK58_24145 PF01170 Putative RNA methylase family UPF0020 AMK58_24150 PF00384 Molybdopterin oxidoreductase AMK58_24150 PF01568 Molydopterin dinucleotide binding domain AMK58_24150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_24155 PF05050 Methyltransferase FkbM domain AMK58_24160 PF10129 AMK58_24160 AMK58_24170 PF13472 GDSL-like Lipase/Acylhydrolase family AMK58_24175 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AMK58_24175 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AMK58_24180 PF00155 Aminotransferase class I and II AMK58_24185 PF13437 HlyD family secretion protein AMK58_24185 PF13533 Biotin-lipoyl like AMK58_24190 PF00873 AcrB/AcrD/AcrF family AMK58_24195 PF00873 AcrB/AcrD/AcrF family AMK58_24200 PF02321 Outer membrane efflux protein AMK58_24205 PF01266 FAD dependent oxidoreductase AMK58_24205 PF05199 GMC oxidoreductase AMK58_24210 PF00512 His Kinase A (phospho-acceptor) domain AMK58_24210 PF00989 PAS fold AMK58_24210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_24215 PF00072 Response regulator receiver domain AMK58_24215 PF00196 Bacterial regulatory proteins, luxR family AMK58_24220 PF00072 Response regulator receiver domain AMK58_24225 PF00881 Nitroreductase family AMK58_24235 PF04264 YceI-like domain AMK58_24240 PF00027 Cyclic nucleotide-binding domain AMK58_24240 PF13545 Crp-like helix-turn-helix domain AMK58_24245 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_24245 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_24250 PF03741 AMK58_24250 AMK58_24255 PF00072 Response regulator receiver domain AMK58_24255 PF00486 Transcriptional regulatory protein, C terminal AMK58_24260 PF00512 His Kinase A (phospho-acceptor) domain AMK58_24260 PF00582 Universal stress protein family AMK58_24260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_24260 PF02702 Osmosensitive K+ channel His kinase sensor domain AMK58_24260 PF13492 GAF domain AMK58_24260 PF13493 Domain of unknown function (DUF4118) AMK58_24265 PF02669 AMK58_24265 AMK58_24270 PF00122 E1-E2 ATPase AMK58_24270 PF00702 haloacid dehalogenase-like hydrolase AMK58_24275 PF03814 AMK58_24275 AMK58_24280 PF09604 AMK58_24280 AMK58_24285 PF00392 Bacterial regulatory proteins, gntR family AMK58_24285 PF07729 FCD domain AMK58_24290 PF05145 AMK58_24290 AMK58_24295 PF00857 Isochorismatase family AMK58_24300 PF00005 ABC transporter AMK58_24300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_24305 PF00005 ABC transporter AMK58_24305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_24310 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_24310 PF12911 AMK58_24310 AMK58_24315 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_24320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_24325 PF00857 Isochorismatase family AMK58_24330 PF01425 Amidase AMK58_24335 PF01425 Amidase AMK58_24340 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMK58_24345 PF01061 AMK58_24345 AMK58_24350 PF00005 ABC transporter AMK58_24355 PF01966 HD domain AMK58_24360 PF07719 Tetratricopeptide repeat AMK58_24360 PF13432 Tetratricopeptide repeat AMK58_24360 PF13844 Glycosyl transferase family 41 AMK58_24370 PF13560 Helix-turn-helix domain AMK58_24375 PF05661 AMK58_24375 AMK58_24380 PF06808 AMK58_24380 AMK58_24385 PF04290 AMK58_24385 AMK58_24390 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_24395 PF00392 Bacterial regulatory proteins, gntR family AMK58_24395 PF07729 FCD domain AMK58_24400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_24400 PF03466 LysR substrate binding domain AMK58_24410 PF01037 AsnC family AMK58_24410 PF13412 Winged helix-turn-helix DNA-binding AMK58_24415 PF00456 Transketolase, thiamine diphosphate binding domain AMK58_24420 PF02082 Transcriptional regulator AMK58_24430 PF00571 CBS domain AMK58_24430 PF02163 Peptidase family M50 AMK58_24440 PF01063 Aminotransferase class IV AMK58_24445 PF00425 chorismate binding enzyme AMK58_24445 PF04715 Anthranilate synthase component I, N terminal region AMK58_24450 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_24460 PF00085 Thioredoxin AMK58_24465 PF00072 Response regulator receiver domain AMK58_24465 PF00196 Bacterial regulatory proteins, luxR family AMK58_24470 PF00512 His Kinase A (phospho-acceptor) domain AMK58_24470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_24470 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AMK58_24475 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMK58_24480 PF11127 Protein of unknown function (DUF2892) AMK58_24485 PF16576 AMK58_24485 AMK58_24490 PF00873 AcrB/AcrD/AcrF family AMK58_24495 PF00581 Rhodanese-like domain AMK58_24500 PF01022 Bacterial regulatory protein, arsR family AMK58_24510 PF04542 Sigma-70 region 2 AMK58_24510 PF08281 Sigma-70, region 4 AMK58_24535 PF06904 AMK58_24535 AMK58_24540 PF00753 Metallo-beta-lactamase superfamily AMK58_24550 PF00171 Aldehyde dehydrogenase family AMK58_24550 PF01619 Proline dehydrogenase AMK58_24550 PF14850 DNA-binding domain of Proline dehydrogenase AMK58_24555 PF03807 NADP oxidoreductase coenzyme F420-dependent AMK58_24555 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMK58_24560 PF01037 AsnC family AMK58_24560 PF13412 Winged helix-turn-helix DNA-binding AMK58_24565 PF13229 Right handed beta helix region AMK58_24565 PF16841 AMK58_24565 AMK58_24570 PF00535 Glycosyl transferase family 2 AMK58_24575 PF01522 Polysaccharide deacetylase AMK58_24585 PF13229 Right handed beta helix region AMK58_24590 PF13527 Acetyltransferase (GNAT) domain AMK58_24595 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMK58_24595 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMK58_24595 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMK58_24600 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_24600 PF02706 Chain length determinant protein AMK58_24600 PF13807 AMK58_24600 AMK58_24605 PF04932 AMK58_24605 AMK58_24610 PF13440 AMK58_24610 AMK58_24610 PF14667 Polysaccharide biosynthesis C-terminal domain AMK58_24615 PF00535 Glycosyl transferase family 2 AMK58_24620 PF00535 Glycosyl transferase family 2 AMK58_24625 PF03547 AMK58_24625 AMK58_24630 PF01261 Xylose isomerase-like TIM barrel AMK58_24635 PF05145 AMK58_24635 AMK58_24645 PF03358 NADPH-dependent FMN reductase AMK58_24650 PF01435 Peptidase family M48 AMK58_24655 PF13614 AAA domain AMK58_24660 PF02195 ParB-like nuclease domain AMK58_24665 PF00571 CBS domain AMK58_24665 PF04982 AMK58_24665 AMK58_24670 PF06472 AMK58_24670 AMK58_24675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_24675 PF00672 HAMP domain AMK58_24680 PF00248 Aldo/keto reductase family AMK58_24685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_24685 PF03466 LysR substrate binding domain AMK58_24690 PF13354 Beta-lactamase enzyme family AMK58_24695 PF13247 4Fe-4S dicluster domain AMK58_24700 PF03916 AMK58_24700 AMK58_24705 PF00384 Molybdopterin oxidoreductase AMK58_24705 PF01568 Molydopterin dinucleotide binding domain AMK58_24710 PF13538 UvrD-like helicase C-terminal domain AMK58_24710 PF13604 AAA domain AMK58_24715 PF07690 Major Facilitator Superfamily AMK58_24720 PF00005 ABC transporter AMK58_24725 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_24730 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMK58_24735 PF05013 N-formylglutamate amidohydrolase AMK58_24740 PF01979 Amidohydrolase family AMK58_24745 PF01614 Bacterial transcriptional regulator AMK58_24745 PF09339 IclR helix-turn-helix domain AMK58_24750 PF07007 Protein of unknown function (DUF1311) AMK58_24750 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme AMK58_24755 PF05962 HutD AMK58_24760 PF01432 Peptidase family M3 AMK58_24765 PF00005 ABC transporter AMK58_24770 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_24775 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMK58_24780 PF00072 Response regulator receiver domain AMK58_24780 PF00512 His Kinase A (phospho-acceptor) domain AMK58_24780 PF00989 PAS fold AMK58_24780 PF01627 Hpt domain AMK58_24780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_24780 PF08448 PAS fold AMK58_24785 PF00072 Response regulator receiver domain AMK58_24785 PF13487 HD domain AMK58_24790 PF07007 Protein of unknown function (DUF1311) AMK58_24795 PF02566 OsmC-like protein AMK58_24800 PF01047 MarR family AMK58_24810 PF13730 AMK58_24810 AMK58_24820 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_24825 PF00211 Adenylate and Guanylate cyclase catalytic domain AMK58_24825 PF02743 Cache domain AMK58_24830 PF00583 Acetyltransferase (GNAT) family AMK58_24835 PF07690 Major Facilitator Superfamily AMK58_24840 PF04392 ABC transporter substrate binding protein AMK58_24845 PF00842 Alanine racemase, C-terminal domain AMK58_24845 PF01168 Alanine racemase, N-terminal domain AMK58_24850 PF01734 Patatin-like phospholipase AMK58_24855 PF04542 Sigma-70 region 2 AMK58_24865 PF13531 Bacterial extracellular solute-binding protein AMK58_24870 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMK58_24870 PF08479 POTRA domain, ShlB-type AMK58_24875 PF05860 haemagglutination activity domain AMK58_24905 PF01575 MaoC like domain AMK58_24910 PF03328 HpcH/HpaI aldolase/citrate lyase family AMK58_24915 PF07690 Major Facilitator Superfamily AMK58_24920 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_24925 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_24930 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMK58_24935 PF07721 Tetratricopeptide repeat AMK58_24935 PF13432 Tetratricopeptide repeat AMK58_24935 PF13844 Glycosyl transferase family 41 AMK58_24940 PF04542 Sigma-70 region 2 AMK58_24940 PF08281 Sigma-70, region 4 AMK58_24950 PF13801 Heavy-metal resistance AMK58_24955 PF12796 Ankyrin repeats (3 copies) AMK58_24960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_24960 PF03466 LysR substrate binding domain AMK58_24965 PF06568 AMK58_24965 AMK58_24975 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMK58_24985 PF00732 GMC oxidoreductase AMK58_24985 PF05199 GMC oxidoreductase AMK58_24995 PF03275 UDP-galactopyranose mutase AMK58_24995 PF13450 NAD(P)-binding Rossmann-like domain AMK58_24995 PF13692 Glycosyl transferases group 1 AMK58_25000 PF02449 Beta-galactosidase AMK58_25005 PF00005 ABC transporter AMK58_25005 PF00664 ABC transporter transmembrane region AMK58_25010 PF00072 Response regulator receiver domain AMK58_25010 PF01590 GAF domain AMK58_25010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_25010 PF08447 PAS fold AMK58_25010 PF08448 PAS fold AMK58_25015 PF00860 Permease family AMK58_25020 PF00990 GGDEF domain AMK58_25030 PF02615 Malate/L-lactate dehydrogenase AMK58_25035 PF01425 Amidase AMK58_25040 PF01019 Gamma-glutamyltranspeptidase AMK58_25050 PF07433 AMK58_25050 AMK58_25055 PF09375 Imelysin AMK58_25060 PF06537 AMK58_25060 AMK58_25065 PF09375 Imelysin AMK58_25070 PF03150 Di-haem cytochrome c peroxidase AMK58_25075 PF04964 AMK58_25075 AMK58_25080 PF01478 Type IV leader peptidase family AMK58_25085 PF08666 SAF domain AMK58_25085 PF16976 AMK58_25085 AMK58_25090 PF00263 AMK58_25090 AMK58_25090 PF04972 BON domain AMK58_25090 PF13629 AMK58_25090 AMK58_25095 PF09476 AMK58_25095 AMK58_25100 PF13614 AAA domain AMK58_25105 PF00437 Type II/IV secretion system protein AMK58_25110 PF00482 Type II secretion system (T2SS), protein F AMK58_25115 PF00482 Type II secretion system (T2SS), protein F AMK58_25120 PF13429 Tetratricopeptide repeat AMK58_25125 PF07811 AMK58_25125 AMK58_25130 PF07811 AMK58_25130 AMK58_25135 PF13400 AMK58_25135 AMK58_25140 PF00072 Response regulator receiver domain AMK58_25160 PF12833 Helix-turn-helix domain AMK58_25165 PF01243 Pyridoxamine 5'-phosphate oxidase AMK58_25200 PF00535 Glycosyl transferase family 2 AMK58_25205 PF01553 Acyltransferase AMK58_25210 PF01593 Flavin containing amine oxidoreductase AMK58_25215 PF01593 Flavin containing amine oxidoreductase AMK58_25220 PF00171 Aldehyde dehydrogenase family AMK58_25240 PF00924 Mechanosensitive ion channel AMK58_25245 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMK58_25245 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMK58_25255 PF01706 FliG C-terminal domain AMK58_25255 PF14841 FliG middle domain AMK58_25255 PF14842 FliG N-terminal domain AMK58_25265 PF00813 AMK58_25265 AMK58_25270 PF01052 Surface presentation of antigens (SPOA) AMK58_25275 PF02108 AMK58_25275 AMK58_25280 PF01514 Secretory protein of YscJ/FliF family AMK58_25280 PF08345 AMK58_25280 AMK58_25285 PF03748 AMK58_25285 AMK58_25290 PF01052 Surface presentation of antigens (SPOA) AMK58_25290 PF02154 Flagellar motor switch protein FliM AMK58_25305 PF02120 Flagellar hook-length control protein FliK AMK58_25310 PF03963 AMK58_25310 AMK58_25310 PF13860 FlgD Ig-like domain AMK58_25315 PF00094 AMK58_25315 AMK58_25315 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_25315 PF03160 Calx-beta domain AMK58_25315 PF06119 AMK58_25315 AMK58_25320 PF03264 NapC/NirT cytochrome c family, N-terminal region AMK58_25325 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AMK58_25330 PF00384 Molybdopterin oxidoreductase AMK58_25330 PF01568 Molydopterin dinucleotide binding domain AMK58_25330 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_25335 PF03927 NapD protein AMK58_25340 PF06796 AMK58_25340 AMK58_25350 PF02107 AMK58_25350 AMK58_25355 PF13144 SAF-like AMK58_25360 PF00460 Flagella basal body rod protein AMK58_25360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_25365 PF00460 Flagella basal body rod protein AMK58_25365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_25375 PF01618 AMK58_25375 AMK58_25380 PF00691 OmpA family AMK58_25380 PF13677 AMK58_25380 AMK58_25385 PF07690 Major Facilitator Superfamily AMK58_25390 PF09998 AMK58_25390 AMK58_25400 PF02588 AMK58_25400 AMK58_25405 PF11747 AMK58_25405 AMK58_25410 PF11747 AMK58_25410 AMK58_25415 PF11747 AMK58_25415 AMK58_25420 PF11747 AMK58_25420 AMK58_25425 PF11747 AMK58_25425 AMK58_25450 PF12833 Helix-turn-helix domain AMK58_25450 PF14532 Sigma-54 interaction domain AMK58_25455 PF00171 Aldehyde dehydrogenase family AMK58_25455 PF00465 Iron-containing alcohol dehydrogenase AMK58_25480 PF12802 MarR family AMK58_25485 PF10027 AMK58_25485 AMK58_25490 PF12802 MarR family AMK58_25500 PF03364 Polyketide cyclase / dehydrase and lipid transport AMK58_25500 PF10604 Polyketide cyclase / dehydrase and lipid transport AMK58_25505 PF00106 short chain dehydrogenase AMK58_25510 PF00109 Beta-ketoacyl synthase, N-terminal domain AMK58_25510 PF02801 Beta-ketoacyl synthase, C-terminal domain AMK58_25515 PF00109 Beta-ketoacyl synthase, N-terminal domain AMK58_25515 PF02801 Beta-ketoacyl synthase, C-terminal domain AMK58_25520 PF00550 Phosphopantetheine attachment site AMK58_25525 PF03992 Antibiotic biosynthesis monooxygenase AMK58_25530 PF03992 Antibiotic biosynthesis monooxygenase AMK58_25535 PF03992 Antibiotic biosynthesis monooxygenase AMK58_25540 PF03992 Antibiotic biosynthesis monooxygenase AMK58_25545 PF00106 short chain dehydrogenase AMK58_25550 PF01648 4'-phosphopantetheinyl transferase superfamily AMK58_25555 PF16576 AMK58_25555 AMK58_25560 PF00873 AcrB/AcrD/AcrF family AMK58_25565 PF00176 SNF2 family N-terminal domain AMK58_25565 PF00271 Helicase conserved C-terminal domain AMK58_25570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_25570 PF03466 LysR substrate binding domain AMK58_25575 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_25575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_25575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_25580 PF00171 Aldehyde dehydrogenase family AMK58_25590 PF00892 EamA-like transporter family AMK58_25595 PF04314 Protein of unknown function (DUF461) AMK58_25600 PF11162 AMK58_25600 AMK58_25605 PF00072 Response regulator receiver domain AMK58_25605 PF00512 His Kinase A (phospho-acceptor) domain AMK58_25605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_25610 PF06745 KaiC AMK58_25620 PF00072 Response regulator receiver domain AMK58_25620 PF00512 His Kinase A (phospho-acceptor) domain AMK58_25620 PF00989 PAS fold AMK58_25620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_25620 PF02743 Cache domain AMK58_25635 PF10134 AMK58_25635 AMK58_25640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_25640 PF03466 LysR substrate binding domain AMK58_25645 PF03601 AMK58_25645 AMK58_25650 PF02805 Metal binding domain of Ada AMK58_25660 PF13419 Haloacid dehalogenase-like hydrolase AMK58_25670 PF13480 Acetyltransferase (GNAT) domain AMK58_25680 PF13560 Helix-turn-helix domain AMK58_25680 PF13614 AAA domain AMK58_25685 PF02195 ParB-like nuclease domain AMK58_25690 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_25690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_25690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_25700 PF04976 AMK58_25700 AMK58_25705 PF12800 4Fe-4S binding domain AMK58_25705 PF13247 4Fe-4S dicluster domain AMK58_25710 PF00384 Molybdopterin oxidoreductase AMK58_25710 PF01568 Molydopterin dinucleotide binding domain AMK58_25710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_25715 PF02629 CoA binding domain AMK58_25715 PF13607 Succinyl-CoA ligase like flavodoxin domain AMK58_25720 PF00549 CoA-ligase AMK58_25720 PF08442 ATP-grasp domain AMK58_25725 PF00171 Aldehyde dehydrogenase family AMK58_25730 PF01970 AMK58_25730 AMK58_25735 PF07331 AMK58_25735 AMK58_25740 PF03401 Tripartite tricarboxylate transporter family receptor AMK58_25745 PF01515 Phosphate acetyl/butaryl transferase AMK58_25750 PF01614 Bacterial transcriptional regulator AMK58_25750 PF09339 IclR helix-turn-helix domain AMK58_25755 PF01614 Bacterial transcriptional regulator AMK58_25755 PF09339 IclR helix-turn-helix domain AMK58_25760 PF01037 AsnC family AMK58_25760 PF13404 AsnC-type helix-turn-helix domain AMK58_25765 PF01042 Endoribonuclease L-PSP AMK58_25770 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_25775 PF14196 AMK58_25775 AMK58_25780 PF13458 Periplasmic binding protein AMK58_25785 PF02653 AMK58_25785 AMK58_25790 PF02653 AMK58_25790 AMK58_25795 PF00005 ABC transporter AMK58_25795 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_25800 PF00005 ABC transporter AMK58_25800 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_25805 PF14196 AMK58_25805 AMK58_25810 PF01546 Peptidase family M20/M25/M40 AMK58_25810 PF07687 Peptidase dimerisation domain AMK58_25815 PF01266 FAD dependent oxidoreductase AMK58_25820 PF07690 Major Facilitator Superfamily AMK58_25825 PF00144 Beta-lactamase AMK58_25830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_25830 PF03466 LysR substrate binding domain AMK58_25835 PF13432 Tetratricopeptide repeat AMK58_25840 PF05050 Methyltransferase FkbM domain AMK58_25850 PF04892 AMK58_25850 AMK58_25860 PF00072 Response regulator receiver domain AMK58_25860 PF00196 Bacterial regulatory proteins, luxR family AMK58_25865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_25865 PF07568 AMK58_25865 AMK58_25865 PF08448 PAS fold AMK58_25865 PF13185 GAF domain AMK58_25875 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMK58_25875 PF02378 Phosphotransferase system, EIIC AMK58_25880 PF00294 pfkB family carbohydrate kinase AMK58_25885 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMK58_25885 PF00381 PTS HPr component phosphorylation site AMK58_25885 PF00391 PEP-utilising enzyme, mobile domain AMK58_25885 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_25885 PF05524 PEP-utilising enzyme, N-terminal AMK58_25890 PF00356 Bacterial regulatory proteins, lacI family AMK58_25890 PF13377 Periplasmic binding protein-like domain AMK58_25895 PF00440 Bacterial regulatory proteins, tetR family AMK58_25900 PF00857 Isochorismatase family AMK58_25910 PF12697 Alpha/beta hydrolase family AMK58_25920 PF01494 FAD binding domain AMK58_25925 PF00005 ABC transporter AMK58_25930 PF00005 ABC transporter AMK58_25930 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_25935 PF02653 AMK58_25935 AMK58_25940 PF02653 AMK58_25940 AMK58_25945 PF13458 Periplasmic binding protein AMK58_25960 PF01979 Amidohydrolase family AMK58_25965 PF01925 AMK58_25965 AMK58_25970 PF01019 Gamma-glutamyltranspeptidase AMK58_25975 PF13458 Periplasmic binding protein AMK58_25980 PF02653 AMK58_25980 AMK58_25985 PF02653 AMK58_25985 AMK58_25990 PF00005 ABC transporter AMK58_25990 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMK58_25995 PF00005 ABC transporter AMK58_26000 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_26000 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_26005 PF00941 FAD binding domain in molybdopterin dehydrogenase AMK58_26010 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_26010 PF01799 [2Fe-2S] binding domain AMK58_26015 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) AMK58_26020 PF01425 Amidase AMK58_26025 PF11533 Protein of unknown function (DUF3225) AMK58_26030 PF01047 MarR family AMK58_26035 PF06545 Protein of unknown function (DUF1116) AMK58_26040 PF00766 Electron transfer flavoprotein FAD-binding domain AMK58_26040 PF01012 Electron transfer flavoprotein domain AMK58_26045 PF01012 Electron transfer flavoprotein domain AMK58_26050 PF01565 FAD binding domain AMK58_26050 PF02913 FAD linked oxidases, C-terminal domain AMK58_26055 PF00171 Aldehyde dehydrogenase family AMK58_26060 PF02558 Ketopantoate reductase PanE/ApbA AMK58_26060 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMK58_26065 PF06808 AMK58_26065 AMK58_26070 PF04290 AMK58_26070 AMK58_26075 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_26075 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMK58_26080 PF00676 Dehydrogenase E1 component AMK58_26080 PF02779 Transketolase, pyrimidine binding domain AMK58_26080 PF16870 AMK58_26080 AMK58_26085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_26085 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_26085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_26090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_26090 PF03466 LysR substrate binding domain AMK58_26095 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_26100 PF02515 CoA-transferase family III AMK58_26105 PF00510 Cytochrome c oxidase subunit III AMK58_26110 PF03626 AMK58_26110 AMK58_26115 PF02222 ATP-grasp domain AMK58_26125 PF01497 Periplasmic binding protein AMK58_26130 PF01032 FecCD transport family AMK58_26135 PF00005 ABC transporter AMK58_26140 PF01794 AMK58_26140 AMK58_26145 PF00174 Oxidoreductase molybdopterin binding domain AMK58_26150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMK58_26150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMK58_26155 PF01081 KDPG and KHG aldolase AMK58_26160 PF00392 Bacterial regulatory proteins, gntR family AMK58_26160 PF07729 FCD domain AMK58_26165 PF00294 pfkB family carbohydrate kinase AMK58_26170 PF00892 EamA-like transporter family AMK58_26180 PF00486 Transcriptional regulatory protein, C terminal AMK58_26185 PF00669 Bacterial flagellin N-terminal helical region AMK58_26185 PF00700 Bacterial flagellin C-terminal helical region AMK58_26190 PF07309 AMK58_26190 AMK58_26195 PF07378 AMK58_26195 AMK58_26205 PF06748 Protein of unknown function (DUF1217) AMK58_26215 PF07690 Major Facilitator Superfamily AMK58_26220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_26220 PF03466 LysR substrate binding domain AMK58_26230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMK58_26235 PF00460 Flagella basal body rod protein AMK58_26240 PF00460 Flagella basal body rod protein AMK58_26240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_26245 PF02049 AMK58_26245 AMK58_26250 PF01313 AMK58_26250 AMK58_26260 PF00771 FHIPEP family AMK58_26265 PF01311 AMK58_26265 AMK58_26270 PF01312 FlhB HrpN YscU SpaS Family AMK58_26280 PF01037 AsnC family AMK58_26280 PF13404 AsnC-type helix-turn-helix domain AMK58_26285 PF03435 Saccharopine dehydrogenase AMK58_26285 PF16653 AMK58_26285 AMK58_26290 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_26290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_26290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_26295 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_26295 PF00175 Oxidoreductase NAD-binding domain AMK58_26295 PF00970 Oxidoreductase FAD-binding domain AMK58_26300 PF08448 PAS fold AMK58_26310 PF03572 Peptidase family S41 AMK58_26310 PF13180 PDZ domain AMK58_26315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_26315 PF03466 LysR substrate binding domain AMK58_26320 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_26325 PF01865 Protein of unknown function DUF47 AMK58_26330 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMK58_26330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_26335 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_26335 PF01799 [2Fe-2S] binding domain AMK58_26340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_26340 PF03466 LysR substrate binding domain AMK58_26345 PF00563 EAL domain AMK58_26345 PF00990 GGDEF domain AMK58_26345 PF03707 AMK58_26345 AMK58_26345 PF13426 PAS domain AMK58_26350 PF00583 Acetyltransferase (GNAT) family AMK58_26355 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMK58_26365 PF10135 AMK58_26365 AMK58_26370 PF02119 AMK58_26370 AMK58_26375 PF00669 Bacterial flagellin N-terminal helical region AMK58_26375 PF00700 Bacterial flagellin C-terminal helical region AMK58_26380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_26385 PF00460 Flagella basal body rod protein AMK58_26385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMK58_26385 PF07559 Flagellar basal body protein FlaE AMK58_26390 PF00313 'Cold-shock' DNA-binding domain AMK58_26410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_26410 PF00672 HAMP domain AMK58_26415 PF03741 AMK58_26415 AMK58_26420 PF06808 AMK58_26420 AMK58_26425 PF04290 AMK58_26425 AMK58_26430 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_26435 PF00392 Bacterial regulatory proteins, gntR family AMK58_26435 PF07729 FCD domain AMK58_26440 PF00892 EamA-like transporter family AMK58_26445 PF01226 Formate/nitrite transporter AMK58_26450 PF04055 Radical SAM superfamily AMK58_26450 PF13353 4Fe-4S single cluster domain AMK58_26455 PF00224 Pyruvate kinase, barrel domain AMK58_26455 PF02887 Pyruvate kinase, alpha/beta domain AMK58_26460 PF00072 Response regulator receiver domain AMK58_26460 PF00360 Phytochrome region AMK58_26460 PF01590 GAF domain AMK58_26460 PF07536 AMK58_26460 AMK58_26460 PF08446 PAS fold AMK58_26465 PF00072 Response regulator receiver domain AMK58_26465 PF00512 His Kinase A (phospho-acceptor) domain AMK58_26465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_26470 PF00440 Bacterial regulatory proteins, tetR family AMK58_26470 PF14246 AefR-like transcriptional repressor, C-terminal region AMK58_26475 PF00440 Bacterial regulatory proteins, tetR family AMK58_26475 PF14246 AefR-like transcriptional repressor, C-terminal region AMK58_26480 PF00529 HlyD family secretion protein AMK58_26480 PF16576 AMK58_26480 AMK58_26485 PF00873 AcrB/AcrD/AcrF family AMK58_26490 PF01380 SIS domain AMK58_26490 PF01418 Helix-turn-helix domain, rpiR family AMK58_26495 PF01228 Glycine radical AMK58_26495 PF02901 Pyruvate formate lyase AMK58_26500 PF00113 Enolase, C-terminal TIM barrel domain AMK58_26500 PF03952 Enolase, N-terminal domain AMK58_26505 PF01515 Phosphate acetyl/butaryl transferase AMK58_26505 PF01575 MaoC like domain AMK58_26510 PF00871 Acetokinase family AMK58_26515 PF00561 alpha/beta hydrolase fold AMK58_26520 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_26525 PF04962 KduI/IolB family AMK58_26530 PF00392 Bacterial regulatory proteins, gntR family AMK58_26530 PF07729 FCD domain AMK58_26535 PF03812 AMK58_26535 AMK58_26540 PF00486 Transcriptional regulatory protein, C terminal AMK58_26555 PF08241 Methyltransferase domain AMK58_26565 PF01914 AMK58_26565 AMK58_26570 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMK58_26570 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMK58_26575 PF09849 AMK58_26575 AMK58_26580 PF01594 AMK58_26580 AMK58_26585 PF13419 Haloacid dehalogenase-like hydrolase AMK58_26590 PF00781 Diacylglycerol kinase catalytic domain AMK58_26595 PF00392 Bacterial regulatory proteins, gntR family AMK58_26595 PF07729 FCD domain AMK58_26600 PF00205 Thiamine pyrophosphate enzyme, central domain AMK58_26600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMK58_26600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMK58_26605 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AMK58_26605 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMK58_26605 PF10531 SLBB domain AMK58_26605 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMK58_26610 PF00384 Molybdopterin oxidoreductase AMK58_26610 PF01568 Molydopterin dinucleotide binding domain AMK58_26610 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMK58_26610 PF13187 4Fe-4S dicluster domain AMK58_26610 PF13510 2Fe-2S iron-sulfur cluster binding domain AMK58_26615 PF01614 Bacterial transcriptional regulator AMK58_26615 PF09339 IclR helix-turn-helix domain AMK58_26620 PF00376 MerR family regulatory protein AMK58_26620 PF09278 MerR, DNA binding AMK58_26630 PF00583 Acetyltransferase (GNAT) family AMK58_26630 PF12802 MarR family AMK58_26635 PF02515 CoA-transferase family III AMK58_26640 PF00989 PAS fold AMK58_26645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_26645 PF00672 HAMP domain AMK58_26645 PF02743 Cache domain AMK58_26650 PF07969 Amidohydrolase family AMK58_26655 PF02653 AMK58_26655 AMK58_26660 PF02653 AMK58_26660 AMK58_26665 PF00005 ABC transporter AMK58_26670 PF02608 Basic membrane protein AMK58_26675 PF14681 Uracil phosphoribosyltransferase AMK58_26680 PF07958 AMK58_26680 AMK58_26685 PF00925 GTP cyclohydrolase II AMK58_26685 PF12471 AMK58_26685 AMK58_26700 PF00150 Cellulase (glycosyl hydrolase family 5) AMK58_26700 PF16841 AMK58_26700 AMK58_26720 PF01464 Transglycosylase SLT domain AMK58_26720 PF05036 Sporulation related domain AMK58_26760 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMK58_26760 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMK58_26765 PF01891 Cobalt uptake substrate-specific transmembrane region AMK58_26775 PF03738 Glutathionylspermidine synthase preATP-grasp AMK58_26785 PF05233 AMK58_26785 AMK58_26785 PF07879 AMK58_26785 AMK58_26790 PF00561 alpha/beta hydrolase fold AMK58_26795 PF00108 Thiolase, N-terminal domain AMK58_26795 PF02803 Thiolase, C-terminal domain AMK58_26800 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_26810 PF07690 Major Facilitator Superfamily AMK58_26815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_26815 PF03466 LysR substrate binding domain AMK58_26820 PF00293 NUDIX domain AMK58_26825 PF00563 EAL domain AMK58_26830 PF01926 50S ribosome-binding GTPase AMK58_26830 PF06071 Protein of unknown function (DUF933) AMK58_26835 PF13103 TonB C terminal AMK58_26840 PF00593 TonB dependent receptor AMK58_26840 PF07715 TonB-dependent Receptor Plug Domain AMK58_26845 PF11162 AMK58_26845 AMK58_26850 PF00476 DNA polymerase family A AMK58_26850 PF01367 5'-3' exonuclease, C-terminal SAM fold AMK58_26850 PF01612 3'-5' exonuclease AMK58_26850 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMK58_26870 PF12146 Putative lysophospholipase AMK58_26875 PF00005 ABC transporter AMK58_26880 PF10276 Zinc-finger domain AMK58_26885 PF00563 EAL domain AMK58_26885 PF00989 PAS fold AMK58_26885 PF00990 GGDEF domain AMK58_26885 PF13426 PAS domain AMK58_26895 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_26900 PF00034 Cytochrome c AMK58_26900 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMK58_26905 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_26915 PF09955 AMK58_26915 AMK58_26920 PF00708 Acylphosphatase AMK58_26925 PF00860 Permease family AMK58_26930 PF00291 Pyridoxal-phosphate dependent enzyme AMK58_26935 PF00795 Carbon-nitrogen hydrolase AMK58_26940 PF00491 Arginase family AMK58_26945 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_26950 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_26955 PF00005 ABC transporter AMK58_26955 PF08402 TOBE domain AMK58_26960 PF13416 Bacterial extracellular solute-binding protein AMK58_26965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_26965 PF03466 LysR substrate binding domain AMK58_26975 PF01381 Helix-turn-helix AMK58_26980 PF00132 Bacterial transferase hexapeptide (six repeats) AMK58_26980 PF06426 Serine acetyltransferase, N-terminal AMK58_26985 PF00912 Transglycosylase AMK58_26990 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMK58_26990 PF07719 Tetratricopeptide repeat AMK58_26990 PF13432 Tetratricopeptide repeat AMK58_26990 PF14559 Tetratricopeptide repeat AMK58_26995 PF00672 HAMP domain AMK58_26995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_27000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMK58_27000 PF02378 Phosphotransferase system, EIIC AMK58_27005 PF00294 pfkB family carbohydrate kinase AMK58_27010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMK58_27010 PF00381 PTS HPr component phosphorylation site AMK58_27010 PF00391 PEP-utilising enzyme, mobile domain AMK58_27010 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_27010 PF05524 PEP-utilising enzyme, N-terminal AMK58_27015 PF00072 Response regulator receiver domain AMK58_27015 PF00512 His Kinase A (phospho-acceptor) domain AMK58_27015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_27015 PF08447 PAS fold AMK58_27015 PF08448 PAS fold AMK58_27015 PF13426 PAS domain AMK58_27020 PF00072 Response regulator receiver domain AMK58_27025 PF00360 Phytochrome region AMK58_27025 PF00512 His Kinase A (phospho-acceptor) domain AMK58_27025 PF01590 GAF domain AMK58_27025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_27025 PF08446 PAS fold AMK58_27030 PF00027 Cyclic nucleotide-binding domain AMK58_27030 PF13545 Crp-like helix-turn-helix domain AMK58_27035 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMK58_27035 PF12801 AMK58_27035 AMK58_27035 PF13746 4Fe-4S dicluster domain AMK58_27040 PF04488 Glycosyltransferase sugar-binding region containing DXD motif AMK58_27045 PF01670 Glycosyl hydrolase family 12 AMK58_27050 PF01116 Fructose-bisphosphate aldolase class-II AMK58_27055 PF08450 SMP-30/Gluconolaconase/LRE-like region AMK58_27060 PF00311 Phosphoenolpyruvate carboxylase AMK58_27065 PF00155 Aminotransferase class I and II AMK58_27065 PF00392 Bacterial regulatory proteins, gntR family AMK58_27070 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMK58_27070 PF12801 AMK58_27070 AMK58_27070 PF13746 4Fe-4S dicluster domain AMK58_27075 PF07885 Ion channel AMK58_27080 PF01323 DSBA-like thioredoxin domain AMK58_27085 PF00072 Response regulator receiver domain AMK58_27085 PF00486 Transcriptional regulatory protein, C terminal AMK58_27095 PF01042 Endoribonuclease L-PSP AMK58_27105 PF07298 AMK58_27105 AMK58_27115 PF03061 Thioesterase superfamily AMK58_27120 PF05690 Thiazole biosynthesis protein ThiG AMK58_27125 PF02597 ThiS family AMK58_27130 PF01266 FAD dependent oxidoreductase AMK58_27135 PF00571 CBS domain AMK58_27135 PF01769 Divalent cation transporter AMK58_27135 PF03448 MgtE intracellular N domain AMK58_27140 PF13466 STAS domain AMK58_27150 PF03099 Biotin/lipoate A/B protein ligase family AMK58_27160 PF00171 Aldehyde dehydrogenase family AMK58_27165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_27170 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_27175 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_27175 PF12911 AMK58_27175 AMK58_27180 PF00005 ABC transporter AMK58_27180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_27185 PF00005 ABC transporter AMK58_27185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMK58_27190 PF01546 Peptidase family M20/M25/M40 AMK58_27190 PF07687 Peptidase dimerisation domain AMK58_27200 PF00106 short chain dehydrogenase AMK58_27210 PF02608 Basic membrane protein AMK58_27215 PF00805 Pentapeptide repeats (8 copies) AMK58_27220 PF00857 Isochorismatase family AMK58_27235 PF00483 Nucleotidyl transferase AMK58_27240 PF00226 DnaJ domain AMK58_27250 PF00849 RNA pseudouridylate synthase AMK58_27255 PF02608 Basic membrane protein AMK58_27260 PF01986 AMK58_27260 AMK58_27265 PF00155 Aminotransferase class I and II AMK58_27275 PF13489 Methyltransferase domain AMK58_27275 PF13500 AAA domain AMK58_27280 PF00202 Aminotransferase class-III AMK58_27285 PF04055 Radical SAM superfamily AMK58_27285 PF06968 Biotin and Thiamin Synthesis associated domain AMK58_27290 PF10028 AMK58_27290 AMK58_27295 PF00391 PEP-utilising enzyme, mobile domain AMK58_27295 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMK58_27295 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_27300 PF00144 Beta-lactamase AMK58_27305 PF03975 CheD chemotactic sensory transduction AMK58_27310 PF00313 'Cold-shock' DNA-binding domain AMK58_27315 PF00501 AMP-binding enzyme AMK58_27315 PF13193 AMP-binding enzyme C-terminal domain AMK58_27320 PF01370 NAD dependent epimerase/dehydratase family AMK58_27325 PF01790 AMK58_27325 AMK58_27330 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase AMK58_27335 PF02578 Multi-copper polyphenol oxidoreductase laccase AMK58_27340 PF01814 Hemerythrin HHE cation binding domain AMK58_27345 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMK58_27345 PF14572 Phosphoribosyl synthetase-associated domain AMK58_27350 PF01386 Ribosomal L25p family AMK58_27350 PF14693 Ribosomal protein TL5, C-terminal domain AMK58_27355 PF01195 Peptidyl-tRNA hydrolase AMK58_27360 PF02653 AMK58_27360 AMK58_27365 PF02653 AMK58_27365 AMK58_27370 PF00005 ABC transporter AMK58_27375 PF13407 Periplasmic binding protein domain AMK58_27380 PF00171 Aldehyde dehydrogenase family AMK58_27385 PF00701 Dihydrodipicolinate synthetase family AMK58_27390 PF08450 SMP-30/Gluconolaconase/LRE-like region AMK58_27395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_27395 PF03466 LysR substrate binding domain AMK58_27400 PF13407 Periplasmic binding protein domain AMK58_27405 PF00005 ABC transporter AMK58_27410 PF02653 AMK58_27410 AMK58_27415 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMK58_27420 PF00920 Dehydratase family AMK58_27425 PF12697 Alpha/beta hydrolase family AMK58_27430 PF01263 Aldose 1-epimerase AMK58_27435 PF01232 Mannitol dehydrogenase Rossmann domain AMK58_27435 PF08125 Mannitol dehydrogenase C-terminal domain AMK58_27440 PF13531 Bacterial extracellular solute-binding protein AMK58_27445 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_27455 PF04230 AMK58_27455 AMK58_27460 PF00394 Multicopper oxidase AMK58_27460 PF07731 Multicopper oxidase AMK58_27460 PF07732 Multicopper oxidase AMK58_27470 PF00440 Bacterial regulatory proteins, tetR family AMK58_27475 PF16576 AMK58_27475 AMK58_27480 PF00873 AcrB/AcrD/AcrF family AMK58_27485 PF13460 NADH(P)-binding AMK58_27490 PF01638 HxlR-like helix-turn-helix AMK58_27495 PF00199 Catalase AMK58_27495 PF06628 Catalase-related immune-responsive AMK58_27500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_27500 PF03466 LysR substrate binding domain AMK58_27505 PF00588 SpoU rRNA Methylase family AMK58_27510 PF06568 AMK58_27510 AMK58_27515 PF07995 Glucose / Sorbosone dehydrogenase AMK58_27550 PF03786 D-mannonate dehydratase (UxuA) AMK58_27555 PF01232 Mannitol dehydrogenase Rossmann domain AMK58_27555 PF08125 Mannitol dehydrogenase C-terminal domain AMK58_27560 PF00392 Bacterial regulatory proteins, gntR family AMK58_27560 PF07729 FCD domain AMK58_27570 PF00392 Bacterial regulatory proteins, gntR family AMK58_27570 PF07729 FCD domain AMK58_27575 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_27580 PF07883 Cupin domain AMK58_27585 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_27590 PF04290 AMK58_27590 AMK58_27595 PF06808 AMK58_27595 AMK58_27600 PF03929 AMK58_27600 AMK58_27615 PF00593 TonB dependent receptor AMK58_27615 PF07715 TonB-dependent Receptor Plug Domain AMK58_27620 PF00248 Aldo/keto reductase family AMK58_27625 PF00392 Bacterial regulatory proteins, gntR family AMK58_27625 PF07729 FCD domain AMK58_27630 PF02142 MGS-like domain AMK58_27635 PF02614 Glucuronate isomerase AMK58_27640 PF04295 AMK58_27640 AMK58_27640 PF08666 SAF domain AMK58_27645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_27645 PF03466 LysR substrate binding domain AMK58_27650 PF01925 AMK58_27650 AMK58_27655 PF03401 Tripartite tricarboxylate transporter family receptor AMK58_27660 PF03401 Tripartite tricarboxylate transporter family receptor AMK58_27665 PF07331 AMK58_27665 AMK58_27670 PF01970 AMK58_27670 AMK58_27675 PF03741 AMK58_27675 AMK58_27680 PF00582 Universal stress protein family AMK58_27685 PF00072 Response regulator receiver domain AMK58_27685 PF00486 Transcriptional regulatory protein, C terminal AMK58_27690 PF00512 His Kinase A (phospho-acceptor) domain AMK58_27690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_27690 PF08521 AMK58_27690 AMK58_27690 PF13531 Bacterial extracellular solute-binding protein AMK58_27710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_27715 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_27720 PF00528 Binding-protein-dependent transport system inner membrane component AMK58_27725 PF00392 Bacterial regulatory proteins, gntR family AMK58_27725 PF07702 UTRA domain AMK58_27730 PF06808 AMK58_27730 AMK58_27735 PF04290 AMK58_27735 AMK58_27740 PF01425 Amidase AMK58_27750 PF00392 Bacterial regulatory proteins, gntR family AMK58_27750 PF07702 UTRA domain AMK58_27755 PF02515 CoA-transferase family III AMK58_27760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMK58_27760 PF02770 Acyl-CoA dehydrogenase, middle domain AMK58_27760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMK58_27765 PF03972 MmgE/PrpD family AMK58_27770 PF01575 MaoC like domain AMK58_27775 PF03328 HpcH/HpaI aldolase/citrate lyase family AMK58_27780 PF07690 Major Facilitator Superfamily AMK58_27785 PF03480 Bacterial extracellular solute-binding protein, family 7 AMK58_27790 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_27795 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMK58_27800 PF13844 Glycosyl transferase family 41 AMK58_27810 PF13844 Glycosyl transferase family 41 AMK58_27815 PF13428 Tetratricopeptide repeat AMK58_27825 PF07728 AAA domain (dynein-related subfamily) AMK58_27825 PF08406 AMK58_27825 AMK58_27830 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_27835 PF00034 Cytochrome c AMK58_27840 PF07732 Multicopper oxidase AMK58_27845 PF02663 FmdE, Molybdenum formylmethanofuran dehydrogenase operon AMK58_27850 PF01814 Hemerythrin HHE cation binding domain AMK58_27855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_27855 PF03466 LysR substrate binding domain AMK58_27860 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_27865 PF01053 Cys/Met metabolism PLP-dependent enzyme AMK58_27875 PF02514 AMK58_27875 AMK58_27880 PF01618 AMK58_27880 AMK58_27885 PF09919 AMK58_27885 AMK58_27895 PF01497 Periplasmic binding protein AMK58_27900 PF01032 FecCD transport family AMK58_27905 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AMK58_27910 PF00593 TonB dependent receptor AMK58_27910 PF07715 TonB-dependent Receptor Plug Domain AMK58_27915 PF01402 Ribbon-helix-helix protein, copG family AMK58_27915 PF08753 NikR C terminal nickel binding domain AMK58_27920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMK58_27930 PF07929 Plasmid pRiA4b ORF-3-like protein AMK58_27945 PF00665 Integrase core domain AMK58_27945 PF13276 AMK58_27945 AMK58_27950 PF01527 Transposase AMK58_27975 PF00589 Phage integrase family AMK58_27980 PF02899 Phage integrase, N-terminal SAM-like domain AMK58_27985 PF07693 AMK58_27985 AMK58_27990 PF00665 Integrase core domain AMK58_27990 PF09039 Mu DNA binding, I gamma subdomain AMK58_27990 PF09299 Mu transposase, C-terminal AMK58_27995 PF05621 AMK58_27995 AMK58_28000 PF06527 AMK58_28000 AMK58_28010 PF00378 Enoyl-CoA hydratase/isomerase family AMK58_28015 PF13561 Enoyl-(Acyl carrier protein) reductase AMK58_28020 PF00108 Thiolase, N-terminal domain AMK58_28020 PF02803 Thiolase, C-terminal domain AMK58_28025 PF01796 AMK58_28025 AMK58_28030 PF00106 short chain dehydrogenase AMK58_28035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_28035 PF03466 LysR substrate binding domain AMK58_28040 PF00083 Sugar (and other) transporter AMK58_28045 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMK58_28045 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMK58_28050 PF02515 CoA-transferase family III AMK58_28055 PF00171 Aldehyde dehydrogenase family AMK58_28060 PF03061 Thioesterase superfamily AMK58_28065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMK58_28065 PF03466 LysR substrate binding domain AMK58_28075 PF12680 SnoaL-like domain AMK58_28085 PF02525 Flavodoxin-like fold AMK58_28095 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMK58_28100 PF00111 2Fe-2S iron-sulfur cluster binding domain AMK58_28100 PF01799 [2Fe-2S] binding domain AMK58_28105 PF00486 Transcriptional regulatory protein, C terminal AMK58_28110 PF00589 Phage integrase family AMK58_28115 PF00665 Integrase core domain AMK58_28115 PF09299 Mu transposase, C-terminal AMK58_28120 PF05621 AMK58_28120 AMK58_28125 PF06527 AMK58_28125 AMK58_28135 PF12770 AMK58_28135 AMK58_28135 PF13191 AAA ATPase domain AMK58_28140 PF00239 Resolvase, N terminal domain AMK58_28160 PF00107 Zinc-binding dehydrogenase AMK58_28160 PF08240 Alcohol dehydrogenase GroES-like domain AMK58_28165 PF13609 Gram-negative porin AMK58_28170 PF03553 AMK58_28170 AMK58_28175 PF00696 Amino acid kinase family AMK58_28180 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMK58_28180 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMK58_28185 PF02274 Amidinotransferase AMK58_28190 PF13520 Amino acid permease AMK58_28200 PF13432 Tetratricopeptide repeat AMK58_28210 PF00266 Aminotransferase class-V AMK58_28215 PF00367 phosphotransferase system, EIIB AMK58_28215 PF02378 Phosphotransferase system, EIIC AMK58_28220 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMK58_28220 PF00381 PTS HPr component phosphorylation site AMK58_28220 PF00391 PEP-utilising enzyme, mobile domain AMK58_28220 PF02896 PEP-utilising enzyme, TIM barrel domain AMK58_28220 PF05524 PEP-utilising enzyme, N-terminal AMK58_28225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMK58_28225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMK58_28230 PF00294 pfkB family carbohydrate kinase AMK58_28245 PF03572 Peptidase family S41 AMK58_28245 PF13180 PDZ domain AMK58_28275 PF01144 Coenzyme A transferase AMK58_28280 PF01144 Coenzyme A transferase AMK58_28285 PF00691 OmpA family AMK58_28290 PF00571 CBS domain AMK58_28295 PF00239 Resolvase, N terminal domain AMK58_28305 PF05621 AMK58_28305 AMK58_28310 PF00665 Integrase core domain AMK58_28315 PF07183 AMK58_28315 AMK58_28315 PF11972 AMK58_28315 AMK58_28320 PF03781 Sulfatase-modifying factor enzyme 1 AMK58_28340 PF01695 IstB-like ATP binding protein AMK58_28345 PF13610 AMK58_28345 AMK58_28350 PF00665 Integrase core domain AMK58_28355 PF01695 IstB-like ATP binding protein AMK58_28365 PF04365 Protein of unknown function (DUF497) AMK58_28370 PF15731 AMK58_28370 AMK58_28375 PF13586 AMK58_28375 AMK58_28385 PF01051 Initiator Replication protein AMK58_28390 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMK58_28405 PF01527 Transposase AMK58_28410 PF13610 AMK58_28410 AMK58_28415 PF02371 AMK58_28415 AMK58_28425 PF00072 Response regulator receiver domain AMK58_28425 PF00486 Transcriptional regulatory protein, C terminal AMK58_28430 PF00672 HAMP domain AMK58_28430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_28435 PF00005 ABC transporter AMK58_28435 PF00664 ABC transporter transmembrane region AMK58_28440 PF16576 AMK58_28440 AMK58_28450 PF00440 Bacterial regulatory proteins, tetR family AMK58_28465 PF00872 AMK58_28465 AMK58_28475 PF02239 Cytochrome D1 heme domain AMK58_28475 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_28480 PF03264 NapC/NirT cytochrome c family, N-terminal region AMK58_28480 PF09459 Ethylbenzene dehydrogenase AMK58_28485 PF13473 Cupredoxin-like domain AMK58_28490 PF02239 Cytochrome D1 heme domain AMK58_28490 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_28500 PF00890 FAD binding domain AMK58_28510 PF12801 AMK58_28510 AMK58_28515 PF03239 AMK58_28515 AMK58_28520 PF13358 DDE superfamily endonuclease AMK58_28520 PF13384 Homeodomain-like domain AMK58_28530 PF10634 Fe2+ transport protein AMK58_28535 PF13610 AMK58_28535 AMK58_28540 PF02602 Uroporphyrinogen-III synthase HemD AMK58_28545 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMK58_28545 PF03900 Porphobilinogen deaminase, C-terminal domain AMK58_28550 PF01903 CbiX AMK58_28555 PF04055 Radical SAM superfamily AMK58_28555 PF13353 4Fe-4S single cluster domain AMK58_28565 PF13404 AsnC-type helix-turn-helix domain AMK58_28575 PF13404 AsnC-type helix-turn-helix domain AMK58_28580 PF02239 Cytochrome D1 heme domain AMK58_28585 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMK58_28590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMK58_28595 PF00027 Cyclic nucleotide-binding domain AMK58_28595 PF13545 Crp-like helix-turn-helix domain AMK58_28600 PF00027 Cyclic nucleotide-binding domain AMK58_28600 PF13545 Crp-like helix-turn-helix domain AMK58_28605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMK58_28605 PF00672 HAMP domain AMK58_28605 PF07238 PilZ domain AMK58_28610 PF13610 AMK58_28610 AMK58_28615 PF00155 Aminotransferase class I and II AMK58_28620 PF01814 Hemerythrin HHE cation binding domain AMK58_28630 PF10006 AMK58_28630 AMK58_28635 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_28640 PF00034 Cytochrome c AMK58_28645 PF13610 AMK58_28645 AMK58_28650 PF13380 CoA binding domain AMK58_28650 PF13549 ATP-grasp domain AMK58_28650 PF13607 Succinyl-CoA ligase like flavodoxin domain AMK58_28655 PF02515 CoA-transferase family III AMK58_28660 PF13472 GDSL-like Lipase/Acylhydrolase family AMK58_28665 PF00072 Response regulator receiver domain AMK58_28665 PF00512 His Kinase A (phospho-acceptor) domain AMK58_28665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_28670 PF00512 His Kinase A (phospho-acceptor) domain AMK58_28670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMK58_28670 PF13185 GAF domain AMK58_28675 PF00042 Globin AMK58_28675 PF00175 Oxidoreductase NAD-binding domain AMK58_28675 PF00970 Oxidoreductase FAD-binding domain AMK58_28690 PF13628 AMK58_28690 AMK58_28695 PF13519 von Willebrand factor type A domain AMK58_28700 PF07728 AAA domain (dynein-related subfamily) AMK58_28700 PF08406 AMK58_28700 AMK58_28705 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMK58_28710 PF00034 Cytochrome c AMK58_28720 PF02663 FmdE, Molybdenum formylmethanofuran dehydrogenase operon AMK58_28725 PF13489 Methyltransferase domain AMK58_28735 PF13579 Glycosyl transferase 4-like domain AMK58_28735 PF13692 Glycosyl transferases group 1 AMK58_28740 PF05050 Methyltransferase FkbM domain AMK58_28745 PF00534 Glycosyl transferases group 1 AMK58_28745 PF13439 Glycosyltransferase Family 4 AMK58_28750 PF08241 Methyltransferase domain AMK58_28755 PF00535 Glycosyl transferase family 2 AMK58_28765 PF00534 Glycosyl transferases group 1 AMK58_28765 PF13439 Glycosyltransferase Family 4 AMK58_28780 PF13524 Glycosyl transferases group 1 AMK58_28785 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMK58_28785 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMK58_28785 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMK58_28805 PF00535 Glycosyl transferase family 2 AMK58_28805 PF13489 Methyltransferase domain AMK58_28810 PF03706 AMK58_28810 AMK58_28815 PF00535 Glycosyl transferase family 2 AMK58_28820 PF13439 Glycosyltransferase Family 4 AMK58_28820 PF13692 Glycosyl transferases group 1 AMK58_28825 PF01370 NAD dependent epimerase/dehydratase family AMK58_28830 PF00535 Glycosyl transferase family 2 AMK58_28835 PF00535 Glycosyl transferase family 2 AMK58_28840 PF13586 AMK58_28840 AMK58_28855 PF00005 ABC transporter AMK58_28855 PF14524 Wzt C-terminal domain AMK58_28860 PF01757 AMK58_28860 AMK58_28865 PF01061 AMK58_28865 AMK58_28870 PF13692 Glycosyl transferases group 1 AMK58_28875 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_28880 PF00535 Glycosyl transferase family 2 AMK58_28880 PF13439 Glycosyltransferase Family 4 AMK58_28885 PF08241 Methyltransferase domain AMK58_28890 PF00534 Glycosyl transferases group 1 AMK58_28890 PF12000 AMK58_28890 AMK58_28895 PF10119 AMK58_28895 AMK58_28895 PF13847 Methyltransferase domain AMK58_28900 PF13580 SIS domain AMK58_28905 PF01266 FAD dependent oxidoreductase AMK58_28910 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_28910 PF08548 Peptidase M10 serralysin C terminal AMK58_28915 PF00534 Glycosyl transferases group 1 AMK58_28920 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMK58_28925 PF16363 AMK58_28925 AMK58_28930 PF04321 RmlD substrate binding domain AMK58_28935 PF00483 Nucleotidyl transferase AMK58_28940 PF08238 Sel1 repeat AMK58_28945 PF13437 HlyD family secretion protein AMK58_28945 PF13533 Biotin-lipoyl like AMK58_28950 PF00005 ABC transporter AMK58_28950 PF00664 ABC transporter transmembrane region AMK58_28950 PF03412 Peptidase C39 family AMK58_28960 PF01370 NAD dependent epimerase/dehydratase family AMK58_28965 PF00005 ABC transporter AMK58_28970 PF01061 AMK58_28970 AMK58_28975 PF16363 AMK58_28975 AMK58_28980 PF16363 AMK58_28980 AMK58_28990 PF00534 Glycosyl transferases group 1 AMK58_28990 PF00535 Glycosyl transferase family 2 AMK58_28990 PF14307 AMK58_28990 AMK58_29015 PF00534 Glycosyl transferases group 1 AMK58_29015 PF00535 Glycosyl transferase family 2 AMK58_29020 PF04577 AMK58_29020 AMK58_29025 PF00483 Nucleotidyl transferase AMK58_29025 PF01050 Mannose-6-phosphate isomerase AMK58_29030 PF00535 Glycosyl transferase family 2 AMK58_29035 PF00534 Glycosyl transferases group 1 AMK58_29040 PF00534 Glycosyl transferases group 1 AMK58_29040 PF13439 Glycosyltransferase Family 4 AMK58_29045 PF00535 Glycosyl transferase family 2 AMK58_29050 PF05045 AMK58_29050 AMK58_29055 PF13489 Methyltransferase domain AMK58_29065 PF09913 AMK58_29065 AMK58_29070 PF13641 Glycosyltransferase like family 2 AMK58_29075 PF01507 Phosphoadenosine phosphosulfate reductase family AMK58_29080 PF00009 Elongation factor Tu GTP binding domain AMK58_29080 PF01583 Adenylylsulphate kinase AMK58_29085 PF16363 AMK58_29085 AMK58_29090 PF04796 AMK58_29090 AMK58_29095 PF13242 HAD-hyrolase-like AMK58_29100 PF00589 Phage integrase family AMK58_29110 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_29110 PF14252 AMK58_29110 AMK58_29120 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMK58_29120 PF14252 AMK58_29120 AMK58_29125 PF13614 AAA domain AMK58_29130 PF02195 ParB-like nuclease domain AMK58_29135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMK58_29135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMK58_29135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMK58_29135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMK58_29140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMK58_29140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMK58_29140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMK58_29150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMK58_29155 PF02719 Polysaccharide biosynthesis protein AMK58_29165 PF03737 Demethylmenaquinone methyltransferase AMK58_29170 PF01970 AMK58_29170 AMK58_29175 PF07331 AMK58_29175 AMK58_29180 PF00293 NUDIX domain AMK58_29185 PF09335 AMK58_29185 AMK58_29190 PF00534 Glycosyl transferases group 1 AMK58_29190 PF12000 AMK58_29190 AMK58_29200 PF00696 Amino acid kinase family AMK58_29205 PF00696 Amino acid kinase family AMK58_29210 PF05048 Periplasmic copper-binding protein (NosD) AMK58_29210 PF16841 AMK58_29210 AMK58_29215 PF13692 Glycosyl transferases group 1 AMK58_29220 PF04055 Radical SAM superfamily AMK58_29225 PF01370 NAD dependent epimerase/dehydratase family AMK58_29230 PF01370 NAD dependent epimerase/dehydratase family AMK58_29235 PF13692 Glycosyl transferases group 1 AMK58_29250 PF13489 Methyltransferase domain AMK58_29255 PF00733 Asparagine synthase AMK58_29255 PF13537 Glutamine amidotransferase domain AMK58_29260 PF13489 Methyltransferase domain AMK58_29270 PF13579 Glycosyl transferase 4-like domain AMK58_29270 PF13692 Glycosyl transferases group 1 AMK58_29275 PF05050 Methyltransferase FkbM domain AMK58_29280 PF00534 Glycosyl transferases group 1 AMK58_29280 PF13439 Glycosyltransferase Family 4 AMK58_29285 PF08241 Methyltransferase domain AMK58_29290 PF00535 Glycosyl transferase family 2